GENSCAN 1.0	Date run:  7-Mar-120	Time: 14:46:49



Sequence /tmp/03_07_20-14:46:49.fasta : 12217 bp : 42.83% C+G : Isochore 1 ( 0 - 43 C+G%)



Parameter matrix: HumanIso.smat



Predicted genes/exons:



Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..

----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------



 1.01 Init +   2223   3020  798  2  0   55    2   924 0.940  75.25

 1.02 Term +   4249   4605  357  0  0   26   38   307 0.976  13.03

 1.03 PlyA +   4711   4716    6                              -0.45



 2.06 PlyA -   4852   4847    6                              -0.45

 2.05 Term -   7297   6829  469  0  1   13   42   387 0.281  20.06

 2.04 Intr -   7888   7730  159  0  0   85   93   144 0.998  12.78

 2.03 Intr -   8185   8029  157  2  1   65   60   144 0.787   7.45

 2.02 Intr -   8546   8278  269  1  2   36   65   287 0.946  17.45

 2.01 Init -   8789   8647  143  2  2   94   96   176 0.550  18.65

 2.00 Prom -   9720   9681   40                              -6.55



 3.00 Prom +  10160  10199   40                             -11.84

 3.01 Init +  10209  11313 1105  2  1   66   57   269 0.512  16.18

 3.02 Intr +  11850  11924   75  1  0   80   86    57 0.507   3.27



Suboptimal exons with probability > 1.000



Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..

----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------



NO EXONS FOUND AT GIVEN PROBABILITY CUTOFF





Predicted peptide sequence(s):





>/tmp/03_03_20-07:33:11.fasta|GENSCAN_predicted_peptide_1|384_aa

MSSKNKVSKQDIDSIVESLMKKQKSYFEPRLAQIQQVGMENVQKLSAIHAELALLTASIS

TVKSDVDKLKCKVENNFSAIDGHDQAFGELELKMADMEDRSRRCNIRVIGLKERLEGFNA

IQYLTHSLPKWFPALADVPVEVMSAHRIYSDAKRGDNRTLIFNVLRYTTRQAILRAAKKD

PLSVDDRKVRFSPDYSNFTVKRCQAFHQAKDAARNKCLDFFLLYPATLKIKEGAQYRSFT

SPKEAEDYVNSAASNHAATPASPRQHGTILTIYRRIHSLYDGERARKIQLLEQAASVALT

GDNWTSVRNDNYLGVTAHFIDNVWKLRCFALEVKKKKKHSRHTAEDCAEEFIDVSNRWEI

NGKLTTLGTDSALIMLAAARLLPF



>/tmp/03_03_20-07:33:11.fasta|GENSCAN_predicted_peptide_2|398_aa

MASTMPSSSSTEDEENTPECLNKDHYHFHHYTMEYIQDKPTNVARVGGFTDKKSIAKVER

CLARERQEATEDHEAIPSTSGATSLTKKLRSRSGLPIAGSGLVLPALCIICQKKEKFINR

AGKRQRDPLSKAETLTVGQLQKAAELKDDQSILLHIKDKDCVALEVQYHKGCYNQYTRFM

TRPEKPEKEQNEPTFDVGYKILCERIIRQRLLVNQEVLRMGQLRMAFIELVKANEGLDAS

NYSIKNLERSRRADAGSQRIQIFDPDQRTPTQWKKFLSEGTKKEALAEFLYVAWKNADLT

IVGKNLCLYIAHTNQCHCVTVKEGVQSVRVVEDLLLFLHAQHAAREHKAVIIKSSDTDVA

VIAVSVQTDLPCSLYVFTGTGNRTRIIDITKVSSANKI



>/tmp/03_03_20-07:33:11.fasta|GENSCAN_predicted_peptide_3|394_aa

MQRGRAAGINGIPPEFYVAFWEQLSPFFLHMINFSIEKGGFLRDVNTALISLLMKKDKNP

TDCSSYRPLSLLNSDVKIFAKLLPLRLEPHMPELVSSDQTGFIKSRTAADNIRRLLHIIA

AAPGCETPMSVLSLDAMKAFDRLEWSFLWSVLEAMGFISTFIGMVKVLYSNPSARVLTGQ

TFSSLFPVSRSSRQGCPLSPALFVLSLEPLAQAVRLSNLVLPICICDTQHKLSLFADDVI

VFLEHPTQSLPHFLSICEEFRKLSGFKMNWSKSALMHLNDNARKSVTPVNIPLVGQLKYL

GIEVFPSLNQIVKHNYSLAFTNVLKDMDRWISLPMSIQARISIIKMNGLPRIHFVSSMVP

LPPPSDYWIKISAQGVRCPLAKPFTHSPYSKTKX
