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kallisto index
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kallisto 0.50.1
Builds a kallisto index

Usage: kallisto index [arguments] FASTA-files

Required argument:
-i, --index=STRING          Filename for the kallisto index to be constructed 

Optional argument:
-k, --kmer-size=INT         k-mer (odd) length (default: 31, max value: 31)
-t, --threads=INT           Number of threads to use (default: 1)
-d, --d-list=STRING         Path to a FASTA-file containing sequences to mask from quantification
    --make-unique           Replace repeated target names with unique names
    --aa                    Generate index from a FASTA-file containing amino acid sequences
    --distinguish           Generate index where sequences are distinguished by the sequence name
-T, --tmp=STRING            Temporary directory (default: tmp)
-m, --min-size=INT          Length of minimizers (default: automatically chosen)
-e, --ec-max-size=INT       Maximum number of targets in an equivalence class (default: no maximum)
