```
docker run --rm -it quay.io/biocontainers/fq:0.12.0--h9ee0642_0 fq filter -h >> src/fq/fq_filter/help.txt
```

Filters a FASTQ file

Usage: fq filter [OPTIONS] --dsts <DSTS> [SRCS]...

Arguments:
  [SRCS]...  FASTQ sources

Options:
      --names <NAMES>
          Allowlist of record names
      --sequence-pattern <SEQUENCE_PATTERN>
          Keep records that have sequences that match the given regular expression
      --dsts <DSTS>
          Filtered FASTQ destinations
  -h, --help
          Print help
  -V, --version
          Print version
