```bash
docker run --rm quay.io/biocontainers/ensembl-vep:115.2--pl5321h2a3209d_1 vep_install --help
```

#---------------#
# VEP INSTALLER #
#---------------#

http://www.ensembl.org/info/docs/variation/vep/vep_script.html#installer

Usage:
perl INSTALL.pl [arguments]

Options
=======

-h | --help        Display this message and quit

-d | --DESTDIR     Set destination directory for API install (default = './')
--CACHE_VERSION    Set data (cache, FASTA) version to install (default = 115)
-c | --CACHEDIR    Set destination directory for cache files (default = '/root/.vep/')

-a | --AUTO        Run installer without user prompts. Use "a" (API + Faidx/htslib),
                   "l" (Faidx/htslib only), "c" (cache), "f" (FASTA), "p" (plugins) to specify
                   parts to install e.g. -a ac for API and cache
-n | --NO_UPDATE   Do not check for updates to ensembl-vep or API
-s | --SPECIES     Comma-separated list of species to install when using --AUTO
-y | --ASSEMBLY    Assembly name to use if more than one during --AUTO

--NO_PLUGINS       Skip plugin installation
-g | --PLUGINS     Comma-separated list of plugins to install when using --AUTO; you can also
                   use "list" to list all plugins and "all" to install all available plugins
-r | --PLUGINSDIR  Set destination directory for VEP plugins files (default = '/root/.vep/Plugins/')
-q | --QUIET       Do not write any status output when using --AUTO
-p | --PREFER_BIN  Use this if the installer fails with out of memory errors
-l | --NO_HTSLIB   Do not attempt to install Faidx/htslib
--NO_BIOPERL       Do not install BioPerl

-t | --CONVERT     Convert downloaded caches to use tabix for retrieving
                   co-located variants (requires tabix)


-u | --CACHEURL    Override default cache URL; this may be a local directory or
                   a remote (e.g. FTP) address.
-f | --FASTAURL    Override default FASTA URL; this may be a local directory or
                   a remote (e.g. FTP) address. The FASTA URL/directory must have
                   gzipped FASTA files under the following structure:
                   [species]/[dna]/
--USE_HTTPS_PROTO  Download cache and FASTA file using HTTPs protocol instead of FTP.
                   Useful for networks where FTP port is blocked by firewall.


--GITHUBTOKEN      Set token to use for authentication when querying GitHub API. Authenticated
                   user have increased rate-limit. NOTE: use token with read-only access.
