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Build branch main with version main (8fe9d66)

Browse Source 
Build pipeline: viash-hub.biobox.main-vhhxn

Source commit: 8fe9d66b0c

Source message: Bcftools stats (#142)

* Initial Commit

* Adding options to config

* Update on script

* update

* Adding test 2 and 3

* Update on config and test

* adding more tests

* debugging and adding tests

* Adding last tests

* removing test_data dir

* Update CHANGELOG.md

* small changes

* small change in help file

* Requested changes

---------

Co-authored-by: Jakub Majercik <57993790+jakubmajercik@users.noreply.github.com>
This commit is contained in:
CI
2024-09-10 14:10:14 +00:00
parent beb7940138
commit 0075a8df93
227 changed files with 8115 additions and 270 deletions
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2
target/executable/agat/agat_convert_bed2gff/.config.vsh.yaml
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@@ -235,7 +235,7 @@ build_info:
output: "target/executable/agat/agat_convert_bed2gff"
executable: "target/executable/agat/agat_convert_bed2gff/agat_convert_bed2gff"
viash_version: "0.9.0-RC7"
git_commit: "320d044fe45e565fbc9772640ebf6f39c5584b4a"
git_commit: "8fe9d66b0c689776846dcb0ecb01a30f3ef1b66b"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

4
target/executable/agat/agat_convert_bed2gff/agat_convert_bed2gff
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@@ -515,9 +515,9 @@ RUN agat --version | sed 's/AGAT\s\(.*\)/agat: "\1"/' > /var/software_versions.t
LABEL org.opencontainers.image.authors="Leïla Paquay"
LABEL org.opencontainers.image.description="Companion container for running component agat agat_convert_bed2gff"
LABEL org.opencontainers.image.created="2024-09-09T06:53:29Z"
LABEL org.opencontainers.image.created="2024-09-10T13:55:49Z"
LABEL org.opencontainers.image.source="https://github.com/NBISweden/AGAT"
LABEL org.opencontainers.image.revision="320d044fe45e565fbc9772640ebf6f39c5584b4a"
LABEL org.opencontainers.image.revision="8fe9d66b0c689776846dcb0ecb01a30f3ef1b66b"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

2
target/executable/agat/agat_convert_embl2gff/.config.vsh.yaml
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@@ -225,7 +225,7 @@ build_info:
output: "target/executable/agat/agat_convert_embl2gff"
executable: "target/executable/agat/agat_convert_embl2gff/agat_convert_embl2gff"
viash_version: "0.9.0-RC7"
git_commit: "320d044fe45e565fbc9772640ebf6f39c5584b4a"
git_commit: "8fe9d66b0c689776846dcb0ecb01a30f3ef1b66b"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

4
target/executable/agat/agat_convert_embl2gff/agat_convert_embl2gff
View File

@@ -505,9 +505,9 @@ RUN agat --version | sed 's/AGAT\s\(.*\)/agat: "\1"/' > /var/software_versions.t
LABEL org.opencontainers.image.authors="Leïla Paquay"
LABEL org.opencontainers.image.description="Companion container for running component agat agat_convert_embl2gff"
LABEL org.opencontainers.image.created="2024-09-09T06:53:29Z"
LABEL org.opencontainers.image.created="2024-09-10T13:55:49Z"
LABEL org.opencontainers.image.source="https://github.com/NBISweden/AGAT"
LABEL org.opencontainers.image.revision="320d044fe45e565fbc9772640ebf6f39c5584b4a"
LABEL org.opencontainers.image.revision="8fe9d66b0c689776846dcb0ecb01a30f3ef1b66b"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

2
target/executable/agat/agat_convert_sp_gff2gtf/.config.vsh.yaml
View File

@@ -228,7 +228,7 @@ build_info:
output: "target/executable/agat/agat_convert_sp_gff2gtf"
executable: "target/executable/agat/agat_convert_sp_gff2gtf/agat_convert_sp_gff2gtf"
viash_version: "0.9.0-RC7"
git_commit: "320d044fe45e565fbc9772640ebf6f39c5584b4a"
git_commit: "8fe9d66b0c689776846dcb0ecb01a30f3ef1b66b"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

4
target/executable/agat/agat_convert_sp_gff2gtf/agat_convert_sp_gff2gtf
View File

@@ -519,9 +519,9 @@ RUN agat --version | sed 's/AGAT\s\(.*\)/agat: "\1"/' > /var/software_versions.t
LABEL org.opencontainers.image.authors="Leïla Paquay"
LABEL org.opencontainers.image.description="Companion container for running component agat agat_convert_sp_gff2gtf"
LABEL org.opencontainers.image.created="2024-09-09T06:53:30Z"
LABEL org.opencontainers.image.created="2024-09-10T13:55:50Z"
LABEL org.opencontainers.image.source="https://github.com/NBISweden/AGAT"
LABEL org.opencontainers.image.revision="320d044fe45e565fbc9772640ebf6f39c5584b4a"
LABEL org.opencontainers.image.revision="8fe9d66b0c689776846dcb0ecb01a30f3ef1b66b"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

2
target/executable/agat/agat_convert_sp_gff2tsv/.config.vsh.yaml
View File

@@ -188,7 +188,7 @@ build_info:
output: "target/executable/agat/agat_convert_sp_gff2tsv"
executable: "target/executable/agat/agat_convert_sp_gff2tsv/agat_convert_sp_gff2tsv"
viash_version: "0.9.0-RC7"
git_commit: "320d044fe45e565fbc9772640ebf6f39c5584b4a"
git_commit: "8fe9d66b0c689776846dcb0ecb01a30f3ef1b66b"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

4
target/executable/agat/agat_convert_sp_gff2tsv/agat_convert_sp_gff2tsv
View File

@@ -484,9 +484,9 @@ RUN agat --version | sed 's/AGAT\s\(.*\)/agat: "\1"/' > /var/software_versions.t
LABEL org.opencontainers.image.authors="Leïla Paquay"
LABEL org.opencontainers.image.description="Companion container for running component agat agat_convert_sp_gff2tsv"
LABEL org.opencontainers.image.created="2024-09-09T06:53:29Z"
LABEL org.opencontainers.image.created="2024-09-10T13:55:49Z"
LABEL org.opencontainers.image.source="https://github.com/NBISweden/AGAT"
LABEL org.opencontainers.image.revision="320d044fe45e565fbc9772640ebf6f39c5584b4a"
LABEL org.opencontainers.image.revision="8fe9d66b0c689776846dcb0ecb01a30f3ef1b66b"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

2
target/executable/agat/agat_convert_sp_gxf2gxf/.config.vsh.yaml
View File

@@ -195,7 +195,7 @@ build_info:
output: "target/executable/agat/agat_convert_sp_gxf2gxf"
executable: "target/executable/agat/agat_convert_sp_gxf2gxf/agat_convert_sp_gxf2gxf"
viash_version: "0.9.0-RC7"
git_commit: "320d044fe45e565fbc9772640ebf6f39c5584b4a"
git_commit: "8fe9d66b0c689776846dcb0ecb01a30f3ef1b66b"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

4
target/executable/agat/agat_convert_sp_gxf2gxf/agat_convert_sp_gxf2gxf
View File

@@ -493,9 +493,9 @@ RUN agat --version | sed 's/AGAT\s\(.*\)/agat: "\1"/' > /var/software_versions.t
LABEL org.opencontainers.image.authors="Leïla Paquay"
LABEL org.opencontainers.image.description="Companion container for running component agat agat_convert_sp_gxf2gxf"
LABEL org.opencontainers.image.created="2024-09-09T06:53:28Z"
LABEL org.opencontainers.image.created="2024-09-10T13:55:48Z"
LABEL org.opencontainers.image.source="https://github.com/NBISweden/AGAT"
LABEL org.opencontainers.image.revision="320d044fe45e565fbc9772640ebf6f39c5584b4a"
LABEL org.opencontainers.image.revision="8fe9d66b0c689776846dcb0ecb01a30f3ef1b66b"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER