Build branch main with version main (da414e7)

Build pipeline: viash-hub.biobox.main-7dwhr

Source commit: da414e72c6

Source message: Add star solo component (#62)

* add star solo component

* change arguments from camelCase to snake_case

* get rid of multiple_sep

* drop star_solo component and just add arguments to star_align_reads

* Update src/star/star_align_reads/script.py

Co-authored-by: Dries Schaumont <5946712+DriesSchaumont@users.noreply.github.com>

---------

Co-authored-by: Dries Schaumont <5946712+DriesSchaumont@users.noreply.github.com>
This commit is contained in:
CI
2024-07-29 08:14:56 +00:00
parent ae3fef8eec
commit 02c1c9ebea
309 changed files with 58822 additions and 4148 deletions

View File

@@ -1,6 +1,24 @@
name: "lofreq_call"
namespace: "lofreq"
version: "main"
authors:
- name: "Kai Waldrant"
roles:
- "author"
- "maintainer"
info:
links:
email: "kai@data-intuitive.com"
github: "KaiWaldrant"
orcid: "0009-0003-8555-1361"
linkedin: "kaiwaldrant"
organizations:
- name: "Data Intuitive"
href: "https://www.data-intuitive.com"
role: "Bioinformatician"
- name: "Open Problems"
href: "https://openproblems.bio"
role: "Contributor"
argument_groups:
- name: "Inputs"
arguments:
@@ -489,7 +507,7 @@ build_info:
output: "target/executable/lofreq/lofreq_call"
executable: "target/executable/lofreq/lofreq_call/lofreq_call"
viash_version: "0.9.0-RC6"
git_commit: "ec69d9af7a59c2618a49bef7d0bf9afc743ca065"
git_commit: "da414e72c60758895b16818309d6c147c288dd84"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

View File

@@ -10,6 +10,9 @@
# authors of this component should specify the license in the header of such
# files, or include a separate license file detailing the licenses of all included
# files.
#
# Component authors:
# * Kai Waldrant (author, maintainer)
set -e
@@ -650,10 +653,11 @@ ENTRYPOINT []
RUN version=$(lofreq version | grep 'version' | sed 's/version: //') && \
echo "lofreq: $version" > /var/software_versions.txt
LABEL org.opencontainers.image.authors="Kai Waldrant"
LABEL org.opencontainers.image.description="Companion container for running component lofreq lofreq_call"
LABEL org.opencontainers.image.created="2024-07-01T20:00:32Z"
LABEL org.opencontainers.image.created="2024-07-29T07:58:07Z"
LABEL org.opencontainers.image.source="https://github.com/viash-hub/biobox"
LABEL org.opencontainers.image.revision="ec69d9af7a59c2618a49bef7d0bf9afc743ca065"
LABEL org.opencontainers.image.revision="da414e72c60758895b16818309d6c147c288dd84"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

View File

@@ -1,6 +1,24 @@
name: "lofreq_indelqual"
namespace: "lofreq"
version: "main"
authors:
- name: "Kai Waldrant"
roles:
- "author"
- "maintainer"
info:
links:
email: "kai@data-intuitive.com"
github: "KaiWaldrant"
orcid: "0009-0003-8555-1361"
linkedin: "kaiwaldrant"
organizations:
- name: "Data Intuitive"
href: "https://www.data-intuitive.com"
role: "Bioinformatician"
- name: "Open Problems"
href: "https://openproblems.bio"
role: "Contributor"
argument_groups:
- name: "Inputs"
arguments:
@@ -197,7 +215,7 @@ build_info:
output: "target/executable/lofreq/lofreq_indelqual"
executable: "target/executable/lofreq/lofreq_indelqual/lofreq_indelqual"
viash_version: "0.9.0-RC6"
git_commit: "ec69d9af7a59c2618a49bef7d0bf9afc743ca065"
git_commit: "da414e72c60758895b16818309d6c147c288dd84"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

View File

@@ -10,6 +10,9 @@
# authors of this component should specify the license in the header of such
# files, or include a separate license file detailing the licenses of all included
# files.
#
# Component authors:
# * Kai Waldrant (author, maintainer)
set -e
@@ -495,10 +498,11 @@ ENTRYPOINT []
RUN version=$(lofreq version | grep 'version' | sed 's/version: //') && \
echo "lofreq: $version" > /var/software_versions.txt
LABEL org.opencontainers.image.authors="Kai Waldrant"
LABEL org.opencontainers.image.description="Companion container for running component lofreq lofreq_indelqual"
LABEL org.opencontainers.image.created="2024-07-01T20:00:31Z"
LABEL org.opencontainers.image.created="2024-07-29T07:58:07Z"
LABEL org.opencontainers.image.source="https://github.com/viash-hub/biobox"
LABEL org.opencontainers.image.revision="ec69d9af7a59c2618a49bef7d0bf9afc743ca065"
LABEL org.opencontainers.image.revision="da414e72c60758895b16818309d6c147c288dd84"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER