Build branch main with version main (da414e7)
Build pipeline: viash-hub.biobox.main-7dwhr
Source commit: da414e72c6
Source message: Add star solo component (#62)
* add star solo component
* change arguments from camelCase to snake_case
* get rid of multiple_sep
* drop star_solo component and just add arguments to star_align_reads
* Update src/star/star_align_reads/script.py
Co-authored-by: Dries Schaumont <5946712+DriesSchaumont@users.noreply.github.com>
---------
Co-authored-by: Dries Schaumont <5946712+DriesSchaumont@users.noreply.github.com>
This commit is contained in:
@@ -1,6 +1,24 @@
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name: "lofreq_call"
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namespace: "lofreq"
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version: "main"
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authors:
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- name: "Kai Waldrant"
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roles:
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- "author"
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- "maintainer"
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info:
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links:
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email: "kai@data-intuitive.com"
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github: "KaiWaldrant"
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orcid: "0009-0003-8555-1361"
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linkedin: "kaiwaldrant"
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organizations:
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- name: "Data Intuitive"
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href: "https://www.data-intuitive.com"
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role: "Bioinformatician"
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- name: "Open Problems"
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href: "https://openproblems.bio"
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role: "Contributor"
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argument_groups:
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- name: "Inputs"
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arguments:
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@@ -489,7 +507,7 @@ build_info:
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output: "target/executable/lofreq/lofreq_call"
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executable: "target/executable/lofreq/lofreq_call/lofreq_call"
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viash_version: "0.9.0-RC6"
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git_commit: "ec69d9af7a59c2618a49bef7d0bf9afc743ca065"
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git_commit: "da414e72c60758895b16818309d6c147c288dd84"
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git_remote: "https://github.com/viash-hub/biobox"
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package_config:
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name: "biobox"
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@@ -10,6 +10,9 @@
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# authors of this component should specify the license in the header of such
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# files, or include a separate license file detailing the licenses of all included
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# files.
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#
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# Component authors:
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# * Kai Waldrant (author, maintainer)
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set -e
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@@ -650,10 +653,11 @@ ENTRYPOINT []
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RUN version=$(lofreq version | grep 'version' | sed 's/version: //') && \
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echo "lofreq: $version" > /var/software_versions.txt
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LABEL org.opencontainers.image.authors="Kai Waldrant"
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LABEL org.opencontainers.image.description="Companion container for running component lofreq lofreq_call"
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LABEL org.opencontainers.image.created="2024-07-01T20:00:32Z"
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LABEL org.opencontainers.image.created="2024-07-29T07:58:07Z"
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LABEL org.opencontainers.image.source="https://github.com/viash-hub/biobox"
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LABEL org.opencontainers.image.revision="ec69d9af7a59c2618a49bef7d0bf9afc743ca065"
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LABEL org.opencontainers.image.revision="da414e72c60758895b16818309d6c147c288dd84"
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LABEL org.opencontainers.image.version="main"
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VIASHDOCKER
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@@ -1,6 +1,24 @@
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name: "lofreq_indelqual"
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namespace: "lofreq"
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version: "main"
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authors:
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- name: "Kai Waldrant"
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roles:
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- "author"
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- "maintainer"
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info:
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links:
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email: "kai@data-intuitive.com"
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github: "KaiWaldrant"
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orcid: "0009-0003-8555-1361"
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linkedin: "kaiwaldrant"
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organizations:
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- name: "Data Intuitive"
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href: "https://www.data-intuitive.com"
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role: "Bioinformatician"
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- name: "Open Problems"
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href: "https://openproblems.bio"
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role: "Contributor"
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argument_groups:
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- name: "Inputs"
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arguments:
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@@ -197,7 +215,7 @@ build_info:
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output: "target/executable/lofreq/lofreq_indelqual"
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executable: "target/executable/lofreq/lofreq_indelqual/lofreq_indelqual"
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viash_version: "0.9.0-RC6"
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git_commit: "ec69d9af7a59c2618a49bef7d0bf9afc743ca065"
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git_commit: "da414e72c60758895b16818309d6c147c288dd84"
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git_remote: "https://github.com/viash-hub/biobox"
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package_config:
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name: "biobox"
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@@ -10,6 +10,9 @@
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# authors of this component should specify the license in the header of such
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# files, or include a separate license file detailing the licenses of all included
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# files.
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#
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# Component authors:
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# * Kai Waldrant (author, maintainer)
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set -e
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@@ -495,10 +498,11 @@ ENTRYPOINT []
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RUN version=$(lofreq version | grep 'version' | sed 's/version: //') && \
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echo "lofreq: $version" > /var/software_versions.txt
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LABEL org.opencontainers.image.authors="Kai Waldrant"
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LABEL org.opencontainers.image.description="Companion container for running component lofreq lofreq_indelqual"
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LABEL org.opencontainers.image.created="2024-07-01T20:00:31Z"
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LABEL org.opencontainers.image.created="2024-07-29T07:58:07Z"
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LABEL org.opencontainers.image.source="https://github.com/viash-hub/biobox"
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LABEL org.opencontainers.image.revision="ec69d9af7a59c2618a49bef7d0bf9afc743ca065"
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LABEL org.opencontainers.image.revision="da414e72c60758895b16818309d6c147c288dd84"
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LABEL org.opencontainers.image.version="main"
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VIASHDOCKER
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