diff --git a/CHANGELOG.md b/CHANGELOG.md
index d1654375..47c786c6 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -19,6 +19,10 @@
 
 ## MINOR CHANGES
 
+* `agat_convert_bed2gff`: change type of argument `inflate_off` from `boolean_false` to `boolean_true` (PR #160).
+
+* `cutadapt`: change type of argument `no_indels` and `no_match_adapter_wildcards` from `boolean_false` to `boolean_true` (PR #160).
+
 * Upgrade to Viash 0.9.0.
 
 # biobox 0.2.0
diff --git a/CONTRIBUTING.md b/CONTRIBUTING.md
index a32b680c..1e4ef18c 100644
--- a/CONTRIBUTING.md
+++ b/CONTRIBUTING.md
@@ -231,6 +231,12 @@ Finally, add all other arguments to the config file. There are a few exceptions:
 
 * If the help lists defaults, do not add them as defaults but to the description. Example: `description: <Explanation of parameter>. Default: 10.`
 
+Note:
+  
+* Prefer using `boolean_true` over `boolean_false`. This avoids confusion when specifying values for this argument in a Nextflow workflow.
+  For example, consider the CLI option `--no-indels` for `cutadapt`. If the config for `cutadapt` would specify an argument `no_indels` of type `boolean_false`,
+  the script of the component must pass a `--no-indels` argument to `cutadapt` when `par_no_indels` is set to `false`. This becomes problematic setting a value for this argument using `fromState` in a nextflow workflow: with `fromState: ["no_indels": true]`, the value that gets passed to the script is `true` and the `--no-indels` flag would *not* be added to the options for `cutadapt`. This is inconsitent to what one might expect when interpreting `["no_indels": true]`.
+  When using `boolean_true`, the reasoning becomes simpler because its value no longer represents the effect of the argument, but wether or not the flag is set.
 
 ### Step 10: Add a Docker engine
 
diff --git a/src/agat/agat_convert_bed2gff/config.vsh.yaml b/src/agat/agat_convert_bed2gff/config.vsh.yaml
index a0fafc44..4466b5f1 100644
--- a/src/agat/agat_convert_bed2gff/config.vsh.yaml
+++ b/src/agat/agat_convert_bed2gff/config.vsh.yaml
@@ -49,7 +49,7 @@ argument_groups:
       - name: --inflate_off
         description: |
           By default we inflate the block fields (blockCount, blockSizes, blockStarts) to create subfeatures of the main feature (primary_tag). The type of subfeature created is based on the inflate_type parameter. If you do not want this inflating behaviour you can deactivate it by using the --inflate_off option.
-        type: boolean_false
+        type: boolean_true
       - name: --inflate_type
         description: |
           Feature type (3rd column in gff) created when inflate parameter activated [default: exon].
diff --git a/src/agat/agat_convert_bed2gff/script.sh b/src/agat/agat_convert_bed2gff/script.sh
index fbeb9206..4d4b8209 100644
--- a/src/agat/agat_convert_bed2gff/script.sh
+++ b/src/agat/agat_convert_bed2gff/script.sh
@@ -4,7 +4,7 @@
 ## VIASH END
 
 # unset flags
-[[ "$par_inflate_off" == "true" ]] && unset par_inflate_off
+[[ "$par_inflate_off" == "false" ]] && unset par_inflate_off
 [[ "$par_verbose" == "false" ]] && unset par_verbose
 
 # run agat_convert_sp_bed2gff.pl
diff --git a/src/cutadapt/config.vsh.yaml b/src/cutadapt/config.vsh.yaml
index 7e36a8e0..e20fb7fb 100644
--- a/src/cutadapt/config.vsh.yaml
+++ b/src/cutadapt/config.vsh.yaml
@@ -196,7 +196,7 @@ argument_groups:
           length of matching region. Default: 0.1 (10%).
         example: 0.1
       - name: --no_indels
-        type: boolean_false
+        type: boolean_true
         description: |
           Allow only mismatches in alignments.
 
@@ -218,7 +218,7 @@ argument_groups:
         description: |
           Interpret IUPAC wildcards in reads.
       - name: --no_match_adapter_wildcards
-        type: boolean_false
+        type: boolean_true
         description: |
           Do not interpret IUPAC wildcards in adapters.
       - name: --action
diff --git a/src/cutadapt/script.sh b/src/cutadapt/script.sh
index d181e2b0..1986e162 100644
--- a/src/cutadapt/script.sh
+++ b/src/cutadapt/script.sh
@@ -96,9 +96,9 @@ debug
 # Input arguments 
 ###########################################################
 echo ">> Parsing input arguments"
-[[ "$par_no_indels" == "true" ]] && unset par_no_indels
+[[ "$par_no_indels" == "false" ]] && unset par_no_indels
 [[ "$par_match_read_wildcards" == "false" ]] && unset par_match_read_wildcards
-[[ "$par_no_match_adapter_wildcards" == "true" ]] && unset par_no_match_adapter_wildcards
+[[ "$par_no_match_adapter_wildcards" == "false" ]] && unset par_no_match_adapter_wildcards
 [[ "$par_revcomp" == "false" ]] && unset par_revcomp
 
 input_args=$(echo \
diff --git a/target/executable/agat/agat_convert_bed2gff/.config.vsh.yaml b/target/executable/agat/agat_convert_bed2gff/.config.vsh.yaml
index 02da0231..1f58b4dc 100644
--- a/target/executable/agat/agat_convert_bed2gff/.config.vsh.yaml
+++ b/target/executable/agat/agat_convert_bed2gff/.config.vsh.yaml
@@ -75,7 +75,7 @@ argument_groups:
     direction: "input"
     multiple: false
     multiple_sep: ";"
-  - type: "boolean_false"
+  - type: "boolean_true"
     name: "--inflate_off"
     description: "By default we inflate the block fields (blockCount, blockSizes,\
       \ blockStarts) to create subfeatures of the main feature (primary_tag). The\
@@ -235,9 +235,9 @@ build_info:
   output: "target/executable/agat/agat_convert_bed2gff"
   executable: "target/executable/agat/agat_convert_bed2gff/agat_convert_bed2gff"
   viash_version: "0.9.0"
-  git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5"
-  git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-8-g0a0edca"
+  git_commit: "add125261c6fa0ed7c9906fc85e7368d2072c4a3"
+  git_remote: "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-9-gadd1252"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/executable/agat/agat_convert_bed2gff/agat_convert_bed2gff b/target/executable/agat/agat_convert_bed2gff/agat_convert_bed2gff
index 65deb778..131d6650 100755
--- a/target/executable/agat/agat_convert_bed2gff/agat_convert_bed2gff
+++ b/target/executable/agat/agat_convert_bed2gff/agat_convert_bed2gff
@@ -208,7 +208,7 @@ function ViashHelp {
   echo "        of a gff file. Example: gene, mRNA, CDS, etc. [default: gene]"
   echo ""
   echo "    --inflate_off"
-  echo "        type: boolean_false"
+  echo "        type: boolean_true"
   echo "        By default we inflate the block fields (blockCount, blockSizes,"
   echo "        blockStarts) to create subfeatures of the main feature (primary_tag)."
   echo "        The type of subfeature created is based on the inflate_type parameter."
@@ -515,9 +515,9 @@ RUN agat --version | sed 's/AGAT\s\(.*\)/agat: "\1"/' > /var/software_versions.t
 
 LABEL org.opencontainers.image.authors="Leïla Paquay"
 LABEL org.opencontainers.image.description="Companion container for running component agat agat_convert_bed2gff"
-LABEL org.opencontainers.image.created="2024-10-03T12:50:46Z"
+LABEL org.opencontainers.image.created="2024-10-07T09:07:56Z"
 LABEL org.opencontainers.image.source="https://github.com/NBISweden/AGAT"
-LABEL org.opencontainers.image.revision="0a0edcacb5368517d249210022363bd9265f1bf5"
+LABEL org.opencontainers.image.revision="add125261c6fa0ed7c9906fc85e7368d2072c4a3"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER
@@ -727,7 +727,7 @@ while [[ $# -gt 0 ]]; do
             ;;
         --inflate_off)
             [ -n "$VIASH_PAR_INFLATE_OFF" ] && ViashError Bad arguments for option \'--inflate_off\': \'$VIASH_PAR_INFLATE_OFF\' \& \'$2\' - you should provide exactly one argument for this option. && exit 1
-            VIASH_PAR_INFLATE_OFF=false
+            VIASH_PAR_INFLATE_OFF=true
             shift 1
             ;;
         --inflate_type)
@@ -970,7 +970,7 @@ fi
 
 # filling in defaults
 if [ -z ${VIASH_PAR_INFLATE_OFF+x} ]; then
-  VIASH_PAR_INFLATE_OFF="true"
+  VIASH_PAR_INFLATE_OFF="false"
 fi
 if [ -z ${VIASH_PAR_VERBOSE+x} ]; then
   VIASH_PAR_VERBOSE="false"
@@ -989,7 +989,7 @@ fi
 # check whether parameters values are of the right type
 if [[ -n "$VIASH_PAR_INFLATE_OFF" ]]; then
   if ! [[ "$VIASH_PAR_INFLATE_OFF" =~ ^(true|True|TRUE|false|False|FALSE|yes|Yes|YES|no|No|NO)$ ]]; then
-    ViashError '--inflate_off' has to be a boolean_false. Use "--help" to get more information on the parameters.
+    ViashError '--inflate_off' has to be a boolean_true. Use "--help" to get more information on the parameters.
     exit 1
   fi
 fi
@@ -1203,7 +1203,7 @@ $( if [ ! -z ${VIASH_META_MEMORY_PIB+x} ]; then echo "${VIASH_META_MEMORY_PIB}"
 ## VIASH END
 
 # unset flags
-[[ "\$par_inflate_off" == "true" ]] && unset par_inflate_off
+[[ "\$par_inflate_off" == "false" ]] && unset par_inflate_off
 [[ "\$par_verbose" == "false" ]] && unset par_verbose
 
 # run agat_convert_sp_bed2gff.pl
diff --git a/target/executable/agat/agat_convert_embl2gff/.config.vsh.yaml b/target/executable/agat/agat_convert_embl2gff/.config.vsh.yaml
index 057a0cda..aea6afeb 100644
--- a/target/executable/agat/agat_convert_embl2gff/.config.vsh.yaml
+++ b/target/executable/agat/agat_convert_embl2gff/.config.vsh.yaml
@@ -225,9 +225,9 @@ build_info:
   output: "target/executable/agat/agat_convert_embl2gff"
   executable: "target/executable/agat/agat_convert_embl2gff/agat_convert_embl2gff"
   viash_version: "0.9.0"
-  git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5"
-  git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-8-g0a0edca"
+  git_commit: "add125261c6fa0ed7c9906fc85e7368d2072c4a3"
+  git_remote: "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-9-gadd1252"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/executable/agat/agat_convert_embl2gff/agat_convert_embl2gff b/target/executable/agat/agat_convert_embl2gff/agat_convert_embl2gff
index 588e0451..8ef88126 100755
--- a/target/executable/agat/agat_convert_embl2gff/agat_convert_embl2gff
+++ b/target/executable/agat/agat_convert_embl2gff/agat_convert_embl2gff
@@ -505,9 +505,9 @@ RUN agat --version | sed 's/AGAT\s\(.*\)/agat: "\1"/' > /var/software_versions.t
 
 LABEL org.opencontainers.image.authors="Leïla Paquay"
 LABEL org.opencontainers.image.description="Companion container for running component agat agat_convert_embl2gff"
-LABEL org.opencontainers.image.created="2024-10-03T12:50:46Z"
+LABEL org.opencontainers.image.created="2024-10-07T09:07:56Z"
 LABEL org.opencontainers.image.source="https://github.com/NBISweden/AGAT"
-LABEL org.opencontainers.image.revision="0a0edcacb5368517d249210022363bd9265f1bf5"
+LABEL org.opencontainers.image.revision="add125261c6fa0ed7c9906fc85e7368d2072c4a3"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER
diff --git a/target/executable/agat/agat_convert_genscan2gff/.config.vsh.yaml b/target/executable/agat/agat_convert_genscan2gff/.config.vsh.yaml
index 20ac150f..d1f831a7 100644
--- a/target/executable/agat/agat_convert_genscan2gff/.config.vsh.yaml
+++ b/target/executable/agat/agat_convert_genscan2gff/.config.vsh.yaml
@@ -230,9 +230,9 @@ build_info:
   output: "target/executable/agat/agat_convert_genscan2gff"
   executable: "target/executable/agat/agat_convert_genscan2gff/agat_convert_genscan2gff"
   viash_version: "0.9.0"
-  git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5"
-  git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-8-g0a0edca"
+  git_commit: "add125261c6fa0ed7c9906fc85e7368d2072c4a3"
+  git_remote: "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-9-gadd1252"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/executable/agat/agat_convert_genscan2gff/agat_convert_genscan2gff b/target/executable/agat/agat_convert_genscan2gff/agat_convert_genscan2gff
index 57aa410c..e6887ec6 100755
--- a/target/executable/agat/agat_convert_genscan2gff/agat_convert_genscan2gff
+++ b/target/executable/agat/agat_convert_genscan2gff/agat_convert_genscan2gff
@@ -514,9 +514,9 @@ RUN agat --version | sed 's/AGAT\s\(.*\)/agat: "\1"/' > /var/software_versions.t
 
 LABEL org.opencontainers.image.authors="Leïla Paquay"
 LABEL org.opencontainers.image.description="Companion container for running component agat agat_convert_genscan2gff"
-LABEL org.opencontainers.image.created="2024-10-03T12:50:47Z"
+LABEL org.opencontainers.image.created="2024-10-07T09:07:57Z"
 LABEL org.opencontainers.image.source="https://github.com/NBISweden/AGAT"
-LABEL org.opencontainers.image.revision="0a0edcacb5368517d249210022363bd9265f1bf5"
+LABEL org.opencontainers.image.revision="add125261c6fa0ed7c9906fc85e7368d2072c4a3"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER
diff --git a/target/executable/agat/agat_convert_sp_gff2gtf/.config.vsh.yaml b/target/executable/agat/agat_convert_sp_gff2gtf/.config.vsh.yaml
index f9108f66..5b59f542 100644
--- a/target/executable/agat/agat_convert_sp_gff2gtf/.config.vsh.yaml
+++ b/target/executable/agat/agat_convert_sp_gff2gtf/.config.vsh.yaml
@@ -228,9 +228,9 @@ build_info:
   output: "target/executable/agat/agat_convert_sp_gff2gtf"
   executable: "target/executable/agat/agat_convert_sp_gff2gtf/agat_convert_sp_gff2gtf"
   viash_version: "0.9.0"
-  git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5"
-  git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-8-g0a0edca"
+  git_commit: "add125261c6fa0ed7c9906fc85e7368d2072c4a3"
+  git_remote: "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-9-gadd1252"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/executable/agat/agat_convert_sp_gff2gtf/agat_convert_sp_gff2gtf b/target/executable/agat/agat_convert_sp_gff2gtf/agat_convert_sp_gff2gtf
index 31991de7..aad0cb4e 100755
--- a/target/executable/agat/agat_convert_sp_gff2gtf/agat_convert_sp_gff2gtf
+++ b/target/executable/agat/agat_convert_sp_gff2gtf/agat_convert_sp_gff2gtf
@@ -519,9 +519,9 @@ RUN agat --version | sed 's/AGAT\s\(.*\)/agat: "\1"/' > /var/software_versions.t
 
 LABEL org.opencontainers.image.authors="Leïla Paquay"
 LABEL org.opencontainers.image.description="Companion container for running component agat agat_convert_sp_gff2gtf"
-LABEL org.opencontainers.image.created="2024-10-03T12:50:47Z"
+LABEL org.opencontainers.image.created="2024-10-07T09:07:56Z"
 LABEL org.opencontainers.image.source="https://github.com/NBISweden/AGAT"
-LABEL org.opencontainers.image.revision="0a0edcacb5368517d249210022363bd9265f1bf5"
+LABEL org.opencontainers.image.revision="add125261c6fa0ed7c9906fc85e7368d2072c4a3"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER
diff --git a/target/executable/agat/agat_convert_sp_gff2tsv/.config.vsh.yaml b/target/executable/agat/agat_convert_sp_gff2tsv/.config.vsh.yaml
index f98370e3..5f85535e 100644
--- a/target/executable/agat/agat_convert_sp_gff2tsv/.config.vsh.yaml
+++ b/target/executable/agat/agat_convert_sp_gff2tsv/.config.vsh.yaml
@@ -188,9 +188,9 @@ build_info:
   output: "target/executable/agat/agat_convert_sp_gff2tsv"
   executable: "target/executable/agat/agat_convert_sp_gff2tsv/agat_convert_sp_gff2tsv"
   viash_version: "0.9.0"
-  git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5"
-  git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-8-g0a0edca"
+  git_commit: "add125261c6fa0ed7c9906fc85e7368d2072c4a3"
+  git_remote: "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-9-gadd1252"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/executable/agat/agat_convert_sp_gff2tsv/agat_convert_sp_gff2tsv b/target/executable/agat/agat_convert_sp_gff2tsv/agat_convert_sp_gff2tsv
index e283b3dc..457c7c9a 100755
--- a/target/executable/agat/agat_convert_sp_gff2tsv/agat_convert_sp_gff2tsv
+++ b/target/executable/agat/agat_convert_sp_gff2tsv/agat_convert_sp_gff2tsv
@@ -484,9 +484,9 @@ RUN agat --version | sed 's/AGAT\s\(.*\)/agat: "\1"/' > /var/software_versions.t
 
 LABEL org.opencontainers.image.authors="Leïla Paquay"
 LABEL org.opencontainers.image.description="Companion container for running component agat agat_convert_sp_gff2tsv"
-LABEL org.opencontainers.image.created="2024-10-03T12:50:46Z"
+LABEL org.opencontainers.image.created="2024-10-07T09:07:55Z"
 LABEL org.opencontainers.image.source="https://github.com/NBISweden/AGAT"
-LABEL org.opencontainers.image.revision="0a0edcacb5368517d249210022363bd9265f1bf5"
+LABEL org.opencontainers.image.revision="add125261c6fa0ed7c9906fc85e7368d2072c4a3"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER
diff --git a/target/executable/agat/agat_convert_sp_gxf2gxf/.config.vsh.yaml b/target/executable/agat/agat_convert_sp_gxf2gxf/.config.vsh.yaml
index 98886328..665cdc30 100644
--- a/target/executable/agat/agat_convert_sp_gxf2gxf/.config.vsh.yaml
+++ b/target/executable/agat/agat_convert_sp_gxf2gxf/.config.vsh.yaml
@@ -195,9 +195,9 @@ build_info:
   output: "target/executable/agat/agat_convert_sp_gxf2gxf"
   executable: "target/executable/agat/agat_convert_sp_gxf2gxf/agat_convert_sp_gxf2gxf"
   viash_version: "0.9.0"
-  git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5"
-  git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-8-g0a0edca"
+  git_commit: "add125261c6fa0ed7c9906fc85e7368d2072c4a3"
+  git_remote: "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-9-gadd1252"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/executable/agat/agat_convert_sp_gxf2gxf/agat_convert_sp_gxf2gxf b/target/executable/agat/agat_convert_sp_gxf2gxf/agat_convert_sp_gxf2gxf
index 3958c5be..1205c174 100755
--- a/target/executable/agat/agat_convert_sp_gxf2gxf/agat_convert_sp_gxf2gxf
+++ b/target/executable/agat/agat_convert_sp_gxf2gxf/agat_convert_sp_gxf2gxf
@@ -493,9 +493,9 @@ RUN agat --version | sed 's/AGAT\s\(.*\)/agat: "\1"/' > /var/software_versions.t
 
 LABEL org.opencontainers.image.authors="Leïla Paquay"
 LABEL org.opencontainers.image.description="Companion container for running component agat agat_convert_sp_gxf2gxf"
-LABEL org.opencontainers.image.created="2024-10-03T12:50:45Z"
+LABEL org.opencontainers.image.created="2024-10-07T09:07:55Z"
 LABEL org.opencontainers.image.source="https://github.com/NBISweden/AGAT"
-LABEL org.opencontainers.image.revision="0a0edcacb5368517d249210022363bd9265f1bf5"
+LABEL org.opencontainers.image.revision="add125261c6fa0ed7c9906fc85e7368d2072c4a3"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER
diff --git a/target/executable/arriba/.config.vsh.yaml b/target/executable/arriba/.config.vsh.yaml
index 045fe275..377335b5 100644
--- a/target/executable/arriba/.config.vsh.yaml
+++ b/target/executable/arriba/.config.vsh.yaml
@@ -706,9 +706,9 @@ build_info:
   output: "target/executable/arriba"
   executable: "target/executable/arriba/arriba"
   viash_version: "0.9.0"
-  git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5"
-  git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-8-g0a0edca"
+  git_commit: "add125261c6fa0ed7c9906fc85e7368d2072c4a3"
+  git_remote: "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-9-gadd1252"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/executable/arriba/arriba b/target/executable/arriba/arriba
index 482ff61f..6de980c7 100755
--- a/target/executable/arriba/arriba
+++ b/target/executable/arriba/arriba
@@ -754,9 +754,9 @@ RUN arriba -h | grep 'Version:' 2>&1 |  sed 's/Version:\s\(.*\)/arriba: "\1"/' >
 
 LABEL org.opencontainers.image.authors="Robrecht Cannoodt"
 LABEL org.opencontainers.image.description="Companion container for running component arriba"
-LABEL org.opencontainers.image.created="2024-10-03T12:50:49Z"
+LABEL org.opencontainers.image.created="2024-10-07T09:07:59Z"
 LABEL org.opencontainers.image.source="https://github.com/suhrig/arriba"
-LABEL org.opencontainers.image.revision="0a0edcacb5368517d249210022363bd9265f1bf5"
+LABEL org.opencontainers.image.revision="add125261c6fa0ed7c9906fc85e7368d2072c4a3"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER
diff --git a/target/executable/bcftools/bcftools_annotate/.config.vsh.yaml b/target/executable/bcftools/bcftools_annotate/.config.vsh.yaml
index 6de2e089..fad6420e 100644
--- a/target/executable/bcftools/bcftools_annotate/.config.vsh.yaml
+++ b/target/executable/bcftools/bcftools_annotate/.config.vsh.yaml
@@ -469,9 +469,9 @@ build_info:
   output: "target/executable/bcftools/bcftools_annotate"
   executable: "target/executable/bcftools/bcftools_annotate/bcftools_annotate"
   viash_version: "0.9.0"
-  git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5"
-  git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-8-g0a0edca"
+  git_commit: "add125261c6fa0ed7c9906fc85e7368d2072c4a3"
+  git_remote: "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-9-gadd1252"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/executable/bcftools/bcftools_annotate/bcftools_annotate b/target/executable/bcftools/bcftools_annotate/bcftools_annotate
index 0d17c71a..56272a7c 100755
--- a/target/executable/bcftools/bcftools_annotate/bcftools_annotate
+++ b/target/executable/bcftools/bcftools_annotate/bcftools_annotate
@@ -650,9 +650,9 @@ RUN echo "bcftools: \"$(bcftools --version | grep 'bcftools' | sed -n 's/^bcftoo
 
 LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo"
 LABEL org.opencontainers.image.description="Companion container for running component bcftools bcftools_annotate"
-LABEL org.opencontainers.image.created="2024-10-03T12:50:39Z"
+LABEL org.opencontainers.image.created="2024-10-07T09:07:49Z"
 LABEL org.opencontainers.image.source="https://github.com/samtools/bcftools"
-LABEL org.opencontainers.image.revision="0a0edcacb5368517d249210022363bd9265f1bf5"
+LABEL org.opencontainers.image.revision="add125261c6fa0ed7c9906fc85e7368d2072c4a3"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER
diff --git a/target/executable/bcftools/bcftools_concat/.config.vsh.yaml b/target/executable/bcftools/bcftools_concat/.config.vsh.yaml
index f6625617..8499c979 100644
--- a/target/executable/bcftools/bcftools_concat/.config.vsh.yaml
+++ b/target/executable/bcftools/bcftools_concat/.config.vsh.yaml
@@ -335,9 +335,9 @@ build_info:
   output: "target/executable/bcftools/bcftools_concat"
   executable: "target/executable/bcftools/bcftools_concat/bcftools_concat"
   viash_version: "0.9.0"
-  git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5"
-  git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-8-g0a0edca"
+  git_commit: "add125261c6fa0ed7c9906fc85e7368d2072c4a3"
+  git_remote: "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-9-gadd1252"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/executable/bcftools/bcftools_concat/bcftools_concat b/target/executable/bcftools/bcftools_concat/bcftools_concat
index b1e882ff..1fedda36 100755
--- a/target/executable/bcftools/bcftools_concat/bcftools_concat
+++ b/target/executable/bcftools/bcftools_concat/bcftools_concat
@@ -566,9 +566,9 @@ RUN echo "bcftools: \"$(bcftools --version | grep 'bcftools' | sed -n 's/^bcftoo
 
 LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo"
 LABEL org.opencontainers.image.description="Companion container for running component bcftools bcftools_concat"
-LABEL org.opencontainers.image.created="2024-10-03T12:50:39Z"
+LABEL org.opencontainers.image.created="2024-10-07T09:07:49Z"
 LABEL org.opencontainers.image.source="https://github.com/samtools/bcftools"
-LABEL org.opencontainers.image.revision="0a0edcacb5368517d249210022363bd9265f1bf5"
+LABEL org.opencontainers.image.revision="add125261c6fa0ed7c9906fc85e7368d2072c4a3"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER
diff --git a/target/executable/bcftools/bcftools_norm/.config.vsh.yaml b/target/executable/bcftools/bcftools_norm/.config.vsh.yaml
index 1a741854..83f9708c 100644
--- a/target/executable/bcftools/bcftools_norm/.config.vsh.yaml
+++ b/target/executable/bcftools/bcftools_norm/.config.vsh.yaml
@@ -416,9 +416,9 @@ build_info:
   output: "target/executable/bcftools/bcftools_norm"
   executable: "target/executable/bcftools/bcftools_norm/bcftools_norm"
   viash_version: "0.9.0"
-  git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5"
-  git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-8-g0a0edca"
+  git_commit: "add125261c6fa0ed7c9906fc85e7368d2072c4a3"
+  git_remote: "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-9-gadd1252"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/executable/bcftools/bcftools_norm/bcftools_norm b/target/executable/bcftools/bcftools_norm/bcftools_norm
index c78d7828..d4d19059 100755
--- a/target/executable/bcftools/bcftools_norm/bcftools_norm
+++ b/target/executable/bcftools/bcftools_norm/bcftools_norm
@@ -589,9 +589,9 @@ RUN echo "bcftools: \"$(bcftools --version | grep 'bcftools' | sed -n 's/^bcftoo
 
 LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo"
 LABEL org.opencontainers.image.description="Companion container for running component bcftools bcftools_norm"
-LABEL org.opencontainers.image.created="2024-10-03T12:50:40Z"
+LABEL org.opencontainers.image.created="2024-10-07T09:07:50Z"
 LABEL org.opencontainers.image.source="https://github.com/samtools/bcftools"
-LABEL org.opencontainers.image.revision="0a0edcacb5368517d249210022363bd9265f1bf5"
+LABEL org.opencontainers.image.revision="add125261c6fa0ed7c9906fc85e7368d2072c4a3"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER
diff --git a/target/executable/bcftools/bcftools_sort/.config.vsh.yaml b/target/executable/bcftools/bcftools_sort/.config.vsh.yaml
index 99792526..ea255a4f 100644
--- a/target/executable/bcftools/bcftools_sort/.config.vsh.yaml
+++ b/target/executable/bcftools/bcftools_sort/.config.vsh.yaml
@@ -185,9 +185,9 @@ build_info:
   output: "target/executable/bcftools/bcftools_sort"
   executable: "target/executable/bcftools/bcftools_sort/bcftools_sort"
   viash_version: "0.9.0"
-  git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5"
-  git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-8-g0a0edca"
+  git_commit: "add125261c6fa0ed7c9906fc85e7368d2072c4a3"
+  git_remote: "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-9-gadd1252"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/executable/bcftools/bcftools_sort/bcftools_sort b/target/executable/bcftools/bcftools_sort/bcftools_sort
index d872fadb..c19adee4 100755
--- a/target/executable/bcftools/bcftools_sort/bcftools_sort
+++ b/target/executable/bcftools/bcftools_sort/bcftools_sort
@@ -483,9 +483,9 @@ RUN echo "bcftools: \"$(bcftools --version | grep 'bcftools' | sed -n 's/^bcftoo
 
 LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo"
 LABEL org.opencontainers.image.description="Companion container for running component bcftools bcftools_sort"
-LABEL org.opencontainers.image.created="2024-10-03T12:50:38Z"
+LABEL org.opencontainers.image.created="2024-10-07T09:07:48Z"
 LABEL org.opencontainers.image.source="https://github.com/samtools/bcftools"
-LABEL org.opencontainers.image.revision="0a0edcacb5368517d249210022363bd9265f1bf5"
+LABEL org.opencontainers.image.revision="add125261c6fa0ed7c9906fc85e7368d2072c4a3"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER
diff --git a/target/executable/bcftools/bcftools_stats/.config.vsh.yaml b/target/executable/bcftools/bcftools_stats/.config.vsh.yaml
index ed516eea..9eb2c5b6 100644
--- a/target/executable/bcftools/bcftools_stats/.config.vsh.yaml
+++ b/target/executable/bcftools/bcftools_stats/.config.vsh.yaml
@@ -458,9 +458,9 @@ build_info:
   output: "target/executable/bcftools/bcftools_stats"
   executable: "target/executable/bcftools/bcftools_stats/bcftools_stats"
   viash_version: "0.9.0"
-  git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5"
-  git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-8-g0a0edca"
+  git_commit: "add125261c6fa0ed7c9906fc85e7368d2072c4a3"
+  git_remote: "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-9-gadd1252"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/executable/bcftools/bcftools_stats/bcftools_stats b/target/executable/bcftools/bcftools_stats/bcftools_stats
index 3408cc04..0153322a 100755
--- a/target/executable/bcftools/bcftools_stats/bcftools_stats
+++ b/target/executable/bcftools/bcftools_stats/bcftools_stats
@@ -626,9 +626,9 @@ RUN echo "bcftools: \"$(bcftools --version | grep 'bcftools' | sed -n 's/^bcftoo
 
 LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo"
 LABEL org.opencontainers.image.description="Companion container for running component bcftools bcftools_stats"
-LABEL org.opencontainers.image.created="2024-10-03T12:50:39Z"
+LABEL org.opencontainers.image.created="2024-10-07T09:07:49Z"
 LABEL org.opencontainers.image.source="https://github.com/samtools/bcftools"
-LABEL org.opencontainers.image.revision="0a0edcacb5368517d249210022363bd9265f1bf5"
+LABEL org.opencontainers.image.revision="add125261c6fa0ed7c9906fc85e7368d2072c4a3"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER
diff --git a/target/executable/bcl_convert/.config.vsh.yaml b/target/executable/bcl_convert/.config.vsh.yaml
index 6fa64802..7a9e8280 100644
--- a/target/executable/bcl_convert/.config.vsh.yaml
+++ b/target/executable/bcl_convert/.config.vsh.yaml
@@ -418,9 +418,9 @@ build_info:
   output: "target/executable/bcl_convert"
   executable: "target/executable/bcl_convert/bcl_convert"
   viash_version: "0.9.0"
-  git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5"
-  git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-8-g0a0edca"
+  git_commit: "add125261c6fa0ed7c9906fc85e7368d2072c4a3"
+  git_remote: "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-9-gadd1252"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/executable/bcl_convert/bcl_convert b/target/executable/bcl_convert/bcl_convert
index 9698b473..9939f4c6 100755
--- a/target/executable/bcl_convert/bcl_convert
+++ b/target/executable/bcl_convert/bcl_convert
@@ -599,9 +599,9 @@ RUN echo "bcl-convert: \"$(bcl-convert -V 2>&1 >/dev/null | sed -n '/Version/ s/
 
 LABEL org.opencontainers.image.authors="Toni Verbeiren, Dorien Roosen"
 LABEL org.opencontainers.image.description="Companion container for running component bcl_convert"
-LABEL org.opencontainers.image.created="2024-10-03T12:50:48Z"
+LABEL org.opencontainers.image.created="2024-10-07T09:07:58Z"
 LABEL org.opencontainers.image.source="https://github.com/viash-hub/biobox"
-LABEL org.opencontainers.image.revision="0a0edcacb5368517d249210022363bd9265f1bf5"
+LABEL org.opencontainers.image.revision="add125261c6fa0ed7c9906fc85e7368d2072c4a3"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER
diff --git a/target/executable/bd_rhapsody/bd_rhapsody_make_reference/.config.vsh.yaml b/target/executable/bd_rhapsody/bd_rhapsody_make_reference/.config.vsh.yaml
index ffe7d767..b60d763b 100644
--- a/target/executable/bd_rhapsody/bd_rhapsody_make_reference/.config.vsh.yaml
+++ b/target/executable/bd_rhapsody/bd_rhapsody_make_reference/.config.vsh.yaml
@@ -274,9 +274,9 @@ build_info:
   output: "target/executable/bd_rhapsody/bd_rhapsody_make_reference"
   executable: "target/executable/bd_rhapsody/bd_rhapsody_make_reference/bd_rhapsody_make_reference"
   viash_version: "0.9.0"
-  git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5"
-  git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-8-g0a0edca"
+  git_commit: "add125261c6fa0ed7c9906fc85e7368d2072c4a3"
+  git_remote: "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-9-gadd1252"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/executable/bd_rhapsody/bd_rhapsody_make_reference/bd_rhapsody_make_reference b/target/executable/bd_rhapsody/bd_rhapsody_make_reference/bd_rhapsody_make_reference
index a7e12aa0..0c2c3b2d 100755
--- a/target/executable/bd_rhapsody/bd_rhapsody_make_reference/bd_rhapsody_make_reference
+++ b/target/executable/bd_rhapsody/bd_rhapsody_make_reference/bd_rhapsody_make_reference
@@ -554,9 +554,9 @@ RUN VERSION=$(ls -v /var/bd_rhapsody_cwl | grep '^v' | sed 's#v##' | tail -1)
 RUN echo "bdgenomics/rhapsody: \"$VERSION\"" > /var/software_versions.txt
 LABEL org.opencontainers.image.authors="Robrecht Cannoodt, Weiwei Schultz"
 LABEL org.opencontainers.image.description="Companion container for running component bd_rhapsody bd_rhapsody_make_reference"
-LABEL org.opencontainers.image.created="2024-10-03T12:50:52Z"
+LABEL org.opencontainers.image.created="2024-10-07T09:08:02Z"
 LABEL org.opencontainers.image.source="https://bitbucket.org/CRSwDev/cwl/src/master/v2.2.1/Extra_Utilities/"
-LABEL org.opencontainers.image.revision="0a0edcacb5368517d249210022363bd9265f1bf5"
+LABEL org.opencontainers.image.revision="add125261c6fa0ed7c9906fc85e7368d2072c4a3"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER
diff --git a/target/executable/bd_rhapsody/bd_rhapsody_sequence_analysis/.config.vsh.yaml b/target/executable/bd_rhapsody/bd_rhapsody_sequence_analysis/.config.vsh.yaml
index 68e9bf4f..77b2f4dc 100644
--- a/target/executable/bd_rhapsody/bd_rhapsody_sequence_analysis/.config.vsh.yaml
+++ b/target/executable/bd_rhapsody/bd_rhapsody_sequence_analysis/.config.vsh.yaml
@@ -1115,9 +1115,9 @@ build_info:
   output: "target/executable/bd_rhapsody/bd_rhapsody_sequence_analysis"
   executable: "target/executable/bd_rhapsody/bd_rhapsody_sequence_analysis/bd_rhapsody_sequence_analysis"
   viash_version: "0.9.0"
-  git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5"
-  git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-8-g0a0edca"
+  git_commit: "add125261c6fa0ed7c9906fc85e7368d2072c4a3"
+  git_remote: "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-9-gadd1252"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/executable/bd_rhapsody/bd_rhapsody_sequence_analysis/bd_rhapsody_sequence_analysis b/target/executable/bd_rhapsody/bd_rhapsody_sequence_analysis/bd_rhapsody_sequence_analysis
index 605c9363..fe01cdbc 100755
--- a/target/executable/bd_rhapsody/bd_rhapsody_sequence_analysis/bd_rhapsody_sequence_analysis
+++ b/target/executable/bd_rhapsody/bd_rhapsody_sequence_analysis/bd_rhapsody_sequence_analysis
@@ -954,9 +954,9 @@ RUN VERSION=$(ls -v /var/bd_rhapsody_cwl | grep '^v' | sed 's#v##' | tail -1)
 RUN echo "bdgenomics/rhapsody: \"$VERSION\"" > /var/software_versions.txt
 LABEL org.opencontainers.image.authors="Robrecht Cannoodt, Weiwei Schultz"
 LABEL org.opencontainers.image.description="Companion container for running component bd_rhapsody bd_rhapsody_sequence_analysis"
-LABEL org.opencontainers.image.created="2024-10-03T12:50:52Z"
+LABEL org.opencontainers.image.created="2024-10-07T09:08:01Z"
 LABEL org.opencontainers.image.source="https://bitbucket.org/CRSwDev/cwl/src/master/v2.2.1"
-LABEL org.opencontainers.image.revision="0a0edcacb5368517d249210022363bd9265f1bf5"
+LABEL org.opencontainers.image.revision="add125261c6fa0ed7c9906fc85e7368d2072c4a3"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER
diff --git a/target/executable/bedtools/bedtools_bamtofastq/.config.vsh.yaml b/target/executable/bedtools/bedtools_bamtofastq/.config.vsh.yaml
index 9bd63337..b74a39f9 100644
--- a/target/executable/bedtools/bedtools_bamtofastq/.config.vsh.yaml
+++ b/target/executable/bedtools/bedtools_bamtofastq/.config.vsh.yaml
@@ -187,9 +187,9 @@ build_info:
   output: "target/executable/bedtools/bedtools_bamtofastq"
   executable: "target/executable/bedtools/bedtools_bamtofastq/bedtools_bamtofastq"
   viash_version: "0.9.0"
-  git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5"
-  git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-8-g0a0edca"
+  git_commit: "add125261c6fa0ed7c9906fc85e7368d2072c4a3"
+  git_remote: "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-9-gadd1252"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/executable/bedtools/bedtools_bamtofastq/bedtools_bamtofastq b/target/executable/bedtools/bedtools_bamtofastq/bedtools_bamtofastq
index 264e86a9..8c9673aa 100755
--- a/target/executable/bedtools/bedtools_bamtofastq/bedtools_bamtofastq
+++ b/target/executable/bedtools/bedtools_bamtofastq/bedtools_bamtofastq
@@ -483,9 +483,9 @@ RUN echo "bedtools: \"$(bedtools --version | sed -n 's/^bedtools //p')\"" > /var
 
 LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo"
 LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_bamtofastq"
-LABEL org.opencontainers.image.created="2024-10-03T12:50:31Z"
+LABEL org.opencontainers.image.created="2024-10-07T09:07:41Z"
 LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2"
-LABEL org.opencontainers.image.revision="0a0edcacb5368517d249210022363bd9265f1bf5"
+LABEL org.opencontainers.image.revision="add125261c6fa0ed7c9906fc85e7368d2072c4a3"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER
diff --git a/target/executable/bedtools/bedtools_bed12tobed6/.config.vsh.yaml b/target/executable/bedtools/bedtools_bed12tobed6/.config.vsh.yaml
index 461d6362..8a8ce77e 100644
--- a/target/executable/bedtools/bedtools_bed12tobed6/.config.vsh.yaml
+++ b/target/executable/bedtools/bedtools_bed12tobed6/.config.vsh.yaml
@@ -176,9 +176,9 @@ build_info:
   output: "target/executable/bedtools/bedtools_bed12tobed6"
   executable: "target/executable/bedtools/bedtools_bed12tobed6/bedtools_bed12tobed6"
   viash_version: "0.9.0"
-  git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5"
-  git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-8-g0a0edca"
+  git_commit: "add125261c6fa0ed7c9906fc85e7368d2072c4a3"
+  git_remote: "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-9-gadd1252"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/executable/bedtools/bedtools_bed12tobed6/bedtools_bed12tobed6 b/target/executable/bedtools/bedtools_bed12tobed6/bedtools_bed12tobed6
index cb5dfe81..fd10b66a 100755
--- a/target/executable/bedtools/bedtools_bed12tobed6/bedtools_bed12tobed6
+++ b/target/executable/bedtools/bedtools_bed12tobed6/bedtools_bed12tobed6
@@ -480,9 +480,9 @@ RUN echo "bedtools: \"$(bedtools --version | sed -n 's/^bedtools //p')\"" > /var
 
 LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo"
 LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_bed12tobed6"
-LABEL org.opencontainers.image.created="2024-10-03T12:50:30Z"
+LABEL org.opencontainers.image.created="2024-10-07T09:07:40Z"
 LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2"
-LABEL org.opencontainers.image.revision="0a0edcacb5368517d249210022363bd9265f1bf5"
+LABEL org.opencontainers.image.revision="add125261c6fa0ed7c9906fc85e7368d2072c4a3"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER
diff --git a/target/executable/bedtools/bedtools_bedtobam/.config.vsh.yaml b/target/executable/bedtools/bedtools_bedtobam/.config.vsh.yaml
index 583c6505..c67cb108 100644
--- a/target/executable/bedtools/bedtools_bedtobam/.config.vsh.yaml
+++ b/target/executable/bedtools/bedtools_bedtobam/.config.vsh.yaml
@@ -214,9 +214,9 @@ build_info:
   output: "target/executable/bedtools/bedtools_bedtobam"
   executable: "target/executable/bedtools/bedtools_bedtobam/bedtools_bedtobam"
   viash_version: "0.9.0"
-  git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5"
-  git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-8-g0a0edca"
+  git_commit: "add125261c6fa0ed7c9906fc85e7368d2072c4a3"
+  git_remote: "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-9-gadd1252"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/executable/bedtools/bedtools_bedtobam/bedtools_bedtobam b/target/executable/bedtools/bedtools_bedtobam/bedtools_bedtobam
index e1cccba0..9b849555 100755
--- a/target/executable/bedtools/bedtools_bedtobam/bedtools_bedtobam
+++ b/target/executable/bedtools/bedtools_bedtobam/bedtools_bedtobam
@@ -496,9 +496,9 @@ RUN echo "bedtools: \"$(bedtools --version | sed -n 's/^bedtools //p')\"" > /var
 
 LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo"
 LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_bedtobam"
-LABEL org.opencontainers.image.created="2024-10-03T12:50:32Z"
+LABEL org.opencontainers.image.created="2024-10-07T09:07:42Z"
 LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2"
-LABEL org.opencontainers.image.revision="0a0edcacb5368517d249210022363bd9265f1bf5"
+LABEL org.opencontainers.image.revision="add125261c6fa0ed7c9906fc85e7368d2072c4a3"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER
diff --git a/target/executable/bedtools/bedtools_genomecov/.config.vsh.yaml b/target/executable/bedtools/bedtools_genomecov/.config.vsh.yaml
index 8f29b552..24134700 100644
--- a/target/executable/bedtools/bedtools_genomecov/.config.vsh.yaml
+++ b/target/executable/bedtools/bedtools_genomecov/.config.vsh.yaml
@@ -337,9 +337,9 @@ build_info:
   output: "target/executable/bedtools/bedtools_genomecov"
   executable: "target/executable/bedtools/bedtools_genomecov/bedtools_genomecov"
   viash_version: "0.9.0"
-  git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5"
-  git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-8-g0a0edca"
+  git_commit: "add125261c6fa0ed7c9906fc85e7368d2072c4a3"
+  git_remote: "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-9-gadd1252"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/executable/bedtools/bedtools_genomecov/bedtools_genomecov b/target/executable/bedtools/bedtools_genomecov/bedtools_genomecov
index 3d849878..538b922e 100755
--- a/target/executable/bedtools/bedtools_genomecov/bedtools_genomecov
+++ b/target/executable/bedtools/bedtools_genomecov/bedtools_genomecov
@@ -591,9 +591,9 @@ RUN echo "bedtools: \"$(bedtools --version | sed -n 's/^bedtools //p')\"" > /var
 
 LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo"
 LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_genomecov"
-LABEL org.opencontainers.image.created="2024-10-03T12:50:29Z"
+LABEL org.opencontainers.image.created="2024-10-07T09:07:40Z"
 LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2"
-LABEL org.opencontainers.image.revision="0a0edcacb5368517d249210022363bd9265f1bf5"
+LABEL org.opencontainers.image.revision="add125261c6fa0ed7c9906fc85e7368d2072c4a3"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER
diff --git a/target/executable/bedtools/bedtools_getfasta/.config.vsh.yaml b/target/executable/bedtools/bedtools_getfasta/.config.vsh.yaml
index abdfb0d8..f17fc680 100644
--- a/target/executable/bedtools/bedtools_getfasta/.config.vsh.yaml
+++ b/target/executable/bedtools/bedtools_getfasta/.config.vsh.yaml
@@ -232,9 +232,9 @@ build_info:
   output: "target/executable/bedtools/bedtools_getfasta"
   executable: "target/executable/bedtools/bedtools_getfasta/bedtools_getfasta"
   viash_version: "0.9.0"
-  git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5"
-  git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-8-g0a0edca"
+  git_commit: "add125261c6fa0ed7c9906fc85e7368d2072c4a3"
+  git_remote: "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-9-gadd1252"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/executable/bedtools/bedtools_getfasta/bedtools_getfasta b/target/executable/bedtools/bedtools_getfasta/bedtools_getfasta
index 945a3f40..617af4a2 100755
--- a/target/executable/bedtools/bedtools_getfasta/bedtools_getfasta
+++ b/target/executable/bedtools/bedtools_getfasta/bedtools_getfasta
@@ -526,9 +526,9 @@ RUN echo "bedtools: \"$(bedtools --version | sed -n 's/^bedtools //p')\"" > /var
 
 LABEL org.opencontainers.image.authors="Dries Schaumont"
 LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_getfasta"
-LABEL org.opencontainers.image.created="2024-10-03T12:50:30Z"
+LABEL org.opencontainers.image.created="2024-10-07T09:07:40Z"
 LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2"
-LABEL org.opencontainers.image.revision="0a0edcacb5368517d249210022363bd9265f1bf5"
+LABEL org.opencontainers.image.revision="add125261c6fa0ed7c9906fc85e7368d2072c4a3"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER
diff --git a/target/executable/bedtools/bedtools_groupby/.config.vsh.yaml b/target/executable/bedtools/bedtools_groupby/.config.vsh.yaml
index be1cda1a..8c5c679d 100644
--- a/target/executable/bedtools/bedtools_groupby/.config.vsh.yaml
+++ b/target/executable/bedtools/bedtools_groupby/.config.vsh.yaml
@@ -273,9 +273,9 @@ build_info:
   output: "target/executable/bedtools/bedtools_groupby"
   executable: "target/executable/bedtools/bedtools_groupby/bedtools_groupby"
   viash_version: "0.9.0"
-  git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5"
-  git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-8-g0a0edca"
+  git_commit: "add125261c6fa0ed7c9906fc85e7368d2072c4a3"
+  git_remote: "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-9-gadd1252"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/executable/bedtools/bedtools_groupby/bedtools_groupby b/target/executable/bedtools/bedtools_groupby/bedtools_groupby
index 9a5726c0..8005f950 100755
--- a/target/executable/bedtools/bedtools_groupby/bedtools_groupby
+++ b/target/executable/bedtools/bedtools_groupby/bedtools_groupby
@@ -552,9 +552,9 @@ RUN echo "bedtools: \"$(bedtools --version | sed -n 's/^bedtools //p')\"" > /var
 
 LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo"
 LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_groupby"
-LABEL org.opencontainers.image.created="2024-10-03T12:50:31Z"
+LABEL org.opencontainers.image.created="2024-10-07T09:07:42Z"
 LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2"
-LABEL org.opencontainers.image.revision="0a0edcacb5368517d249210022363bd9265f1bf5"
+LABEL org.opencontainers.image.revision="add125261c6fa0ed7c9906fc85e7368d2072c4a3"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER
diff --git a/target/executable/bedtools/bedtools_intersect/.config.vsh.yaml b/target/executable/bedtools/bedtools_intersect/.config.vsh.yaml
index 3e912a83..1213f995 100644
--- a/target/executable/bedtools/bedtools_intersect/.config.vsh.yaml
+++ b/target/executable/bedtools/bedtools_intersect/.config.vsh.yaml
@@ -410,9 +410,9 @@ build_info:
   output: "target/executable/bedtools/bedtools_intersect"
   executable: "target/executable/bedtools/bedtools_intersect/bedtools_intersect"
   viash_version: "0.9.0"
-  git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5"
-  git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-8-g0a0edca"
+  git_commit: "add125261c6fa0ed7c9906fc85e7368d2072c4a3"
+  git_remote: "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-9-gadd1252"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/executable/bedtools/bedtools_intersect/bedtools_intersect b/target/executable/bedtools/bedtools_intersect/bedtools_intersect
index 0841290a..325c329d 100755
--- a/target/executable/bedtools/bedtools_intersect/bedtools_intersect
+++ b/target/executable/bedtools/bedtools_intersect/bedtools_intersect
@@ -633,9 +633,9 @@ RUN echo "bedtools: \"$(bedtools --version | sed -n 's/^bedtools //p')\"" > /var
 
 LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo"
 LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_intersect"
-LABEL org.opencontainers.image.created="2024-10-03T12:50:30Z"
+LABEL org.opencontainers.image.created="2024-10-07T09:07:40Z"
 LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2"
-LABEL org.opencontainers.image.revision="0a0edcacb5368517d249210022363bd9265f1bf5"
+LABEL org.opencontainers.image.revision="add125261c6fa0ed7c9906fc85e7368d2072c4a3"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER
diff --git a/target/executable/bedtools/bedtools_links/.config.vsh.yaml b/target/executable/bedtools/bedtools_links/.config.vsh.yaml
index 4d954872..83b1372f 100644
--- a/target/executable/bedtools/bedtools_links/.config.vsh.yaml
+++ b/target/executable/bedtools/bedtools_links/.config.vsh.yaml
@@ -210,9 +210,9 @@ build_info:
   output: "target/executable/bedtools/bedtools_links"
   executable: "target/executable/bedtools/bedtools_links/bedtools_links"
   viash_version: "0.9.0"
-  git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5"
-  git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-8-g0a0edca"
+  git_commit: "add125261c6fa0ed7c9906fc85e7368d2072c4a3"
+  git_remote: "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-9-gadd1252"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/executable/bedtools/bedtools_links/bedtools_links b/target/executable/bedtools/bedtools_links/bedtools_links
index b4b1dfb2..85978d2d 100755
--- a/target/executable/bedtools/bedtools_links/bedtools_links
+++ b/target/executable/bedtools/bedtools_links/bedtools_links
@@ -500,9 +500,9 @@ RUN echo "bedtools: \"$(bedtools --version | sed -n 's/^bedtools //p')\"" > /var
 
 LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo"
 LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_links"
-LABEL org.opencontainers.image.created="2024-10-03T12:50:31Z"
+LABEL org.opencontainers.image.created="2024-10-07T09:07:41Z"
 LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2"
-LABEL org.opencontainers.image.revision="0a0edcacb5368517d249210022363bd9265f1bf5"
+LABEL org.opencontainers.image.revision="add125261c6fa0ed7c9906fc85e7368d2072c4a3"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER
diff --git a/target/executable/bedtools/bedtools_merge/.config.vsh.yaml b/target/executable/bedtools/bedtools_merge/.config.vsh.yaml
index d8b6a449..0803bdc6 100644
--- a/target/executable/bedtools/bedtools_merge/.config.vsh.yaml
+++ b/target/executable/bedtools/bedtools_merge/.config.vsh.yaml
@@ -279,9 +279,9 @@ build_info:
   output: "target/executable/bedtools/bedtools_merge"
   executable: "target/executable/bedtools/bedtools_merge/bedtools_merge"
   viash_version: "0.9.0"
-  git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5"
-  git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-8-g0a0edca"
+  git_commit: "add125261c6fa0ed7c9906fc85e7368d2072c4a3"
+  git_remote: "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-9-gadd1252"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/executable/bedtools/bedtools_merge/bedtools_merge b/target/executable/bedtools/bedtools_merge/bedtools_merge
index d43a0e1d..f962808d 100755
--- a/target/executable/bedtools/bedtools_merge/bedtools_merge
+++ b/target/executable/bedtools/bedtools_merge/bedtools_merge
@@ -558,9 +558,9 @@ RUN echo "bedtools: \"$(bedtools --version | sed -n 's/^bedtools //p')\"" > /var
 
 LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo"
 LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_merge"
-LABEL org.opencontainers.image.created="2024-10-03T12:50:29Z"
+LABEL org.opencontainers.image.created="2024-10-07T09:07:39Z"
 LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2"
-LABEL org.opencontainers.image.revision="0a0edcacb5368517d249210022363bd9265f1bf5"
+LABEL org.opencontainers.image.revision="add125261c6fa0ed7c9906fc85e7368d2072c4a3"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER
diff --git a/target/executable/bedtools/bedtools_sort/.config.vsh.yaml b/target/executable/bedtools/bedtools_sort/.config.vsh.yaml
index 129d65cf..75655609 100644
--- a/target/executable/bedtools/bedtools_sort/.config.vsh.yaml
+++ b/target/executable/bedtools/bedtools_sort/.config.vsh.yaml
@@ -222,9 +222,9 @@ build_info:
   output: "target/executable/bedtools/bedtools_sort"
   executable: "target/executable/bedtools/bedtools_sort/bedtools_sort"
   viash_version: "0.9.0"
-  git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5"
-  git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-8-g0a0edca"
+  git_commit: "add125261c6fa0ed7c9906fc85e7368d2072c4a3"
+  git_remote: "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-9-gadd1252"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/executable/bedtools/bedtools_sort/bedtools_sort b/target/executable/bedtools/bedtools_sort/bedtools_sort
index 02eed57f..68a39a47 100755
--- a/target/executable/bedtools/bedtools_sort/bedtools_sort
+++ b/target/executable/bedtools/bedtools_sort/bedtools_sort
@@ -509,9 +509,9 @@ RUN echo "bedtools: \"$(bedtools --version | sed -n 's/^bedtools //p')\"" > /var
 
 LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo"
 LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_sort"
-LABEL org.opencontainers.image.created="2024-10-03T12:50:32Z"
+LABEL org.opencontainers.image.created="2024-10-07T09:07:42Z"
 LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2"
-LABEL org.opencontainers.image.revision="0a0edcacb5368517d249210022363bd9265f1bf5"
+LABEL org.opencontainers.image.revision="add125261c6fa0ed7c9906fc85e7368d2072c4a3"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER
diff --git a/target/executable/busco/busco_download_datasets/.config.vsh.yaml b/target/executable/busco/busco_download_datasets/.config.vsh.yaml
index 85b0f452..4c37cf82 100644
--- a/target/executable/busco/busco_download_datasets/.config.vsh.yaml
+++ b/target/executable/busco/busco_download_datasets/.config.vsh.yaml
@@ -158,9 +158,9 @@ build_info:
   output: "target/executable/busco/busco_download_datasets"
   executable: "target/executable/busco/busco_download_datasets/busco_download_datasets"
   viash_version: "0.9.0"
-  git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5"
-  git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-8-g0a0edca"
+  git_commit: "add125261c6fa0ed7c9906fc85e7368d2072c4a3"
+  git_remote: "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-9-gadd1252"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/executable/busco/busco_download_datasets/busco_download_datasets b/target/executable/busco/busco_download_datasets/busco_download_datasets
index dfc3cc6c..f5b6baf8 100755
--- a/target/executable/busco/busco_download_datasets/busco_download_datasets
+++ b/target/executable/busco/busco_download_datasets/busco_download_datasets
@@ -475,9 +475,9 @@ RUN busco --version | sed 's/BUSCO\s\(.*\)/busco: "\1"/' > /var/software_version
 
 LABEL org.opencontainers.image.authors="Dorien Roosen"
 LABEL org.opencontainers.image.description="Companion container for running component busco busco_download_datasets"
-LABEL org.opencontainers.image.created="2024-10-03T12:50:43Z"
+LABEL org.opencontainers.image.created="2024-10-07T09:07:53Z"
 LABEL org.opencontainers.image.source="https://gitlab.com/ezlab/busco"
-LABEL org.opencontainers.image.revision="0a0edcacb5368517d249210022363bd9265f1bf5"
+LABEL org.opencontainers.image.revision="add125261c6fa0ed7c9906fc85e7368d2072c4a3"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER
diff --git a/target/executable/busco/busco_list_datasets/.config.vsh.yaml b/target/executable/busco/busco_list_datasets/.config.vsh.yaml
index 875b8577..1ce0a8a5 100644
--- a/target/executable/busco/busco_list_datasets/.config.vsh.yaml
+++ b/target/executable/busco/busco_list_datasets/.config.vsh.yaml
@@ -145,9 +145,9 @@ build_info:
   output: "target/executable/busco/busco_list_datasets"
   executable: "target/executable/busco/busco_list_datasets/busco_list_datasets"
   viash_version: "0.9.0"
-  git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5"
-  git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-8-g0a0edca"
+  git_commit: "add125261c6fa0ed7c9906fc85e7368d2072c4a3"
+  git_remote: "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-9-gadd1252"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/executable/busco/busco_list_datasets/busco_list_datasets b/target/executable/busco/busco_list_datasets/busco_list_datasets
index 58eb83ce..74ad299e 100755
--- a/target/executable/busco/busco_list_datasets/busco_list_datasets
+++ b/target/executable/busco/busco_list_datasets/busco_list_datasets
@@ -465,9 +465,9 @@ RUN busco --version | sed 's/BUSCO\s\(.*\)/busco: "\1"/' > /var/software_version
 
 LABEL org.opencontainers.image.authors="Dorien Roosen"
 LABEL org.opencontainers.image.description="Companion container for running component busco busco_list_datasets"
-LABEL org.opencontainers.image.created="2024-10-03T12:50:43Z"
+LABEL org.opencontainers.image.created="2024-10-07T09:07:53Z"
 LABEL org.opencontainers.image.source="https://gitlab.com/ezlab/busco"
-LABEL org.opencontainers.image.revision="0a0edcacb5368517d249210022363bd9265f1bf5"
+LABEL org.opencontainers.image.revision="add125261c6fa0ed7c9906fc85e7368d2072c4a3"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER
diff --git a/target/executable/busco/busco_run/.config.vsh.yaml b/target/executable/busco/busco_run/.config.vsh.yaml
index 0c89b7ab..aedd311f 100644
--- a/target/executable/busco/busco_run/.config.vsh.yaml
+++ b/target/executable/busco/busco_run/.config.vsh.yaml
@@ -423,9 +423,9 @@ build_info:
   output: "target/executable/busco/busco_run"
   executable: "target/executable/busco/busco_run/busco_run"
   viash_version: "0.9.0"
-  git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5"
-  git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-8-g0a0edca"
+  git_commit: "add125261c6fa0ed7c9906fc85e7368d2072c4a3"
+  git_remote: "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-9-gadd1252"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/executable/busco/busco_run/busco_run b/target/executable/busco/busco_run/busco_run
index aee56017..7e97f26d 100755
--- a/target/executable/busco/busco_run/busco_run
+++ b/target/executable/busco/busco_run/busco_run
@@ -632,9 +632,9 @@ RUN busco --version | sed 's/BUSCO\s\(.*\)/busco: "\1"/' > /var/software_version
 
 LABEL org.opencontainers.image.authors="Dorien Roosen"
 LABEL org.opencontainers.image.description="Companion container for running component busco busco_run"
-LABEL org.opencontainers.image.created="2024-10-03T12:50:43Z"
+LABEL org.opencontainers.image.created="2024-10-07T09:07:53Z"
 LABEL org.opencontainers.image.source="https://gitlab.com/ezlab/busco"
-LABEL org.opencontainers.image.revision="0a0edcacb5368517d249210022363bd9265f1bf5"
+LABEL org.opencontainers.image.revision="add125261c6fa0ed7c9906fc85e7368d2072c4a3"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER
diff --git a/target/executable/cutadapt/.config.vsh.yaml b/target/executable/cutadapt/.config.vsh.yaml
index 0c0f76db..4532c8b2 100644
--- a/target/executable/cutadapt/.config.vsh.yaml
+++ b/target/executable/cutadapt/.config.vsh.yaml
@@ -251,7 +251,7 @@ argument_groups:
     direction: "input"
     multiple: false
     multiple_sep: ";"
-  - type: "boolean_false"
+  - type: "boolean_true"
     name: "--no_indels"
     description: "Allow only mismatches in alignments.\n"
     info: null
@@ -286,7 +286,7 @@ argument_groups:
     description: "Interpret IUPAC wildcards in reads.\n"
     info: null
     direction: "input"
-  - type: "boolean_false"
+  - type: "boolean_true"
     name: "--no_match_adapter_wildcards"
     description: "Do not interpret IUPAC wildcards in adapters.\n"
     info: null
@@ -740,9 +740,9 @@ build_info:
   output: "target/executable/cutadapt"
   executable: "target/executable/cutadapt/cutadapt"
   viash_version: "0.9.0"
-  git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5"
-  git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-8-g0a0edca"
+  git_commit: "add125261c6fa0ed7c9906fc85e7368d2072c4a3"
+  git_remote: "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-9-gadd1252"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/executable/cutadapt/cutadapt b/target/executable/cutadapt/cutadapt
index f1ce9ad0..272519fb 100755
--- a/target/executable/cutadapt/cutadapt
+++ b/target/executable/cutadapt/cutadapt
@@ -322,7 +322,7 @@ function ViashHelp {
   echo "        length of matching region. Default: 0.1 (10%)."
   echo ""
   echo "    --no_indels"
-  echo "        type: boolean_false"
+  echo "        type: boolean_true"
   echo "        Allow only mismatches in alignments."
   echo ""
   echo "    -n, --times"
@@ -341,7 +341,7 @@ function ViashHelp {
   echo "        Interpret IUPAC wildcards in reads."
   echo ""
   echo "    --no_match_adapter_wildcards"
-  echo "        type: boolean_false"
+  echo "        type: boolean_true"
   echo "        Do not interpret IUPAC wildcards in adapters."
   echo ""
   echo "    --action"
@@ -831,9 +831,9 @@ RUN cutadapt --version | sed 's/\(.*\)/cutadapt: "\1"/' > /var/software_versions
 
 LABEL org.opencontainers.image.authors="Toni Verbeiren"
 LABEL org.opencontainers.image.description="Companion container for running component cutadapt"
-LABEL org.opencontainers.image.created="2024-10-03T12:50:51Z"
+LABEL org.opencontainers.image.created="2024-10-07T09:08:00Z"
 LABEL org.opencontainers.image.source="https://github.com/marcelm/cutadapt"
-LABEL org.opencontainers.image.revision="0a0edcacb5368517d249210022363bd9265f1bf5"
+LABEL org.opencontainers.image.revision="add125261c6fa0ed7c9906fc85e7368d2072c4a3"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER
@@ -1269,7 +1269,7 @@ while [[ $# -gt 0 ]]; do
             ;;
         --no_indels)
             [ -n "$VIASH_PAR_NO_INDELS" ] && ViashError Bad arguments for option \'--no_indels\': \'$VIASH_PAR_NO_INDELS\' \& \'$2\' - you should provide exactly one argument for this option. && exit 1
-            VIASH_PAR_NO_INDELS=false
+            VIASH_PAR_NO_INDELS=true
             shift 1
             ;;
         --times)
@@ -1313,7 +1313,7 @@ while [[ $# -gt 0 ]]; do
             ;;
         --no_match_adapter_wildcards)
             [ -n "$VIASH_PAR_NO_MATCH_ADAPTER_WILDCARDS" ] && ViashError Bad arguments for option \'--no_match_adapter_wildcards\': \'$VIASH_PAR_NO_MATCH_ADAPTER_WILDCARDS\' \& \'$2\' - you should provide exactly one argument for this option. && exit 1
-            VIASH_PAR_NO_MATCH_ADAPTER_WILDCARDS=false
+            VIASH_PAR_NO_MATCH_ADAPTER_WILDCARDS=true
             shift 1
             ;;
         --action)
@@ -1910,13 +1910,13 @@ if [ -z ${VIASH_PAR_INTERLEAVED+x} ]; then
   VIASH_PAR_INTERLEAVED="false"
 fi
 if [ -z ${VIASH_PAR_NO_INDELS+x} ]; then
-  VIASH_PAR_NO_INDELS="true"
+  VIASH_PAR_NO_INDELS="false"
 fi
 if [ -z ${VIASH_PAR_MATCH_READ_WILDCARDS+x} ]; then
   VIASH_PAR_MATCH_READ_WILDCARDS="false"
 fi
 if [ -z ${VIASH_PAR_NO_MATCH_ADAPTER_WILDCARDS+x} ]; then
-  VIASH_PAR_NO_MATCH_ADAPTER_WILDCARDS="true"
+  VIASH_PAR_NO_MATCH_ADAPTER_WILDCARDS="false"
 fi
 if [ -z ${VIASH_PAR_REVCOMP+x} ]; then
   VIASH_PAR_REVCOMP="false"
@@ -2015,7 +2015,7 @@ if [[ -n "$VIASH_PAR_ERROR_RATE" ]]; then
 fi
 if [[ -n "$VIASH_PAR_NO_INDELS" ]]; then
   if ! [[ "$VIASH_PAR_NO_INDELS" =~ ^(true|True|TRUE|false|False|FALSE|yes|Yes|YES|no|No|NO)$ ]]; then
-    ViashError '--no_indels' has to be a boolean_false. Use "--help" to get more information on the parameters.
+    ViashError '--no_indels' has to be a boolean_true. Use "--help" to get more information on the parameters.
     exit 1
   fi
 fi
@@ -2039,7 +2039,7 @@ if [[ -n "$VIASH_PAR_MATCH_READ_WILDCARDS" ]]; then
 fi
 if [[ -n "$VIASH_PAR_NO_MATCH_ADAPTER_WILDCARDS" ]]; then
   if ! [[ "$VIASH_PAR_NO_MATCH_ADAPTER_WILDCARDS" =~ ^(true|True|TRUE|false|False|FALSE|yes|Yes|YES|no|No|NO)$ ]]; then
-    ViashError '--no_match_adapter_wildcards' has to be a boolean_false. Use "--help" to get more information on the parameters.
+    ViashError '--no_match_adapter_wildcards' has to be a boolean_true. Use "--help" to get more information on the parameters.
     exit 1
   fi
 fi
@@ -2588,9 +2588,9 @@ debug
 # Input arguments 
 ###########################################################
 echo ">> Parsing input arguments"
-[[ "\$par_no_indels" == "true" ]] && unset par_no_indels
+[[ "\$par_no_indels" == "false" ]] && unset par_no_indels
 [[ "\$par_match_read_wildcards" == "false" ]] && unset par_match_read_wildcards
-[[ "\$par_no_match_adapter_wildcards" == "true" ]] && unset par_no_match_adapter_wildcards
+[[ "\$par_no_match_adapter_wildcards" == "false" ]] && unset par_no_match_adapter_wildcards
 [[ "\$par_revcomp" == "false" ]] && unset par_revcomp
 
 input_args=\$(echo \\
diff --git a/target/executable/falco/.config.vsh.yaml b/target/executable/falco/.config.vsh.yaml
index d3bc2c10..409784da 100644
--- a/target/executable/falco/.config.vsh.yaml
+++ b/target/executable/falco/.config.vsh.yaml
@@ -317,9 +317,9 @@ build_info:
   output: "target/executable/falco"
   executable: "target/executable/falco/falco"
   viash_version: "0.9.0"
-  git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5"
-  git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-8-g0a0edca"
+  git_commit: "add125261c6fa0ed7c9906fc85e7368d2072c4a3"
+  git_remote: "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-9-gadd1252"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/executable/falco/falco b/target/executable/falco/falco
index fc5bca04..6d4d7623 100755
--- a/target/executable/falco/falco
+++ b/target/executable/falco/falco
@@ -589,9 +589,9 @@ RUN echo "falco: \"$(falco -v | sed -n 's/^falco //p')\"" > /var/software_versio
 
 LABEL org.opencontainers.image.authors="Toni Verbeiren"
 LABEL org.opencontainers.image.description="Companion container for running component falco"
-LABEL org.opencontainers.image.created="2024-10-03T12:50:51Z"
+LABEL org.opencontainers.image.created="2024-10-07T09:08:01Z"
 LABEL org.opencontainers.image.source="https://github.com/smithlabcode/falco"
-LABEL org.opencontainers.image.revision="0a0edcacb5368517d249210022363bd9265f1bf5"
+LABEL org.opencontainers.image.revision="add125261c6fa0ed7c9906fc85e7368d2072c4a3"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER
diff --git a/target/executable/fastp/.config.vsh.yaml b/target/executable/fastp/.config.vsh.yaml
index eb3ba1ba..2188ea01 100644
--- a/target/executable/fastp/.config.vsh.yaml
+++ b/target/executable/fastp/.config.vsh.yaml
@@ -1083,9 +1083,9 @@ build_info:
   output: "target/executable/fastp"
   executable: "target/executable/fastp/fastp"
   viash_version: "0.9.0"
-  git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5"
-  git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-8-g0a0edca"
+  git_commit: "add125261c6fa0ed7c9906fc85e7368d2072c4a3"
+  git_remote: "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-9-gadd1252"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/executable/fastp/fastp b/target/executable/fastp/fastp
index 542f6fa8..70412881 100755
--- a/target/executable/fastp/fastp
+++ b/target/executable/fastp/fastp
@@ -1028,9 +1028,9 @@ RUN fastp --version 2>&1 | sed 's# #: "#;s#$#"#' > /var/software_versions.txt
 
 LABEL org.opencontainers.image.authors="Robrecht Cannoodt"
 LABEL org.opencontainers.image.description="Companion container for running component fastp"
-LABEL org.opencontainers.image.created="2024-10-03T12:50:48Z"
+LABEL org.opencontainers.image.created="2024-10-07T09:07:57Z"
 LABEL org.opencontainers.image.source="https://github.com/OpenGene/fastp"
-LABEL org.opencontainers.image.revision="0a0edcacb5368517d249210022363bd9265f1bf5"
+LABEL org.opencontainers.image.revision="add125261c6fa0ed7c9906fc85e7368d2072c4a3"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER
diff --git a/target/executable/fastqc/.config.vsh.yaml b/target/executable/fastqc/.config.vsh.yaml
index 86b3342f..b5f70490 100644
--- a/target/executable/fastqc/.config.vsh.yaml
+++ b/target/executable/fastqc/.config.vsh.yaml
@@ -340,9 +340,9 @@ build_info:
   output: "target/executable/fastqc"
   executable: "target/executable/fastqc/fastqc"
   viash_version: "0.9.0"
-  git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5"
-  git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-8-g0a0edca"
+  git_commit: "add125261c6fa0ed7c9906fc85e7368d2072c4a3"
+  git_remote: "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-9-gadd1252"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/executable/fastqc/fastqc b/target/executable/fastqc/fastqc
index af8c4ea8..b034eb4e 100755
--- a/target/executable/fastqc/fastqc
+++ b/target/executable/fastqc/fastqc
@@ -601,9 +601,9 @@ RUN echo "fastqc: $(fastqc --version | sed -n 's/^FastQC //p')" > /var/software_
 
 LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo"
 LABEL org.opencontainers.image.description="Companion container for running component fastqc"
-LABEL org.opencontainers.image.created="2024-10-03T12:50:37Z"
+LABEL org.opencontainers.image.created="2024-10-07T09:07:47Z"
 LABEL org.opencontainers.image.source="https://github.com/s-andrews/FastQC"
-LABEL org.opencontainers.image.revision="0a0edcacb5368517d249210022363bd9265f1bf5"
+LABEL org.opencontainers.image.revision="add125261c6fa0ed7c9906fc85e7368d2072c4a3"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER
diff --git a/target/executable/featurecounts/.config.vsh.yaml b/target/executable/featurecounts/.config.vsh.yaml
index df0dcf46..43c4a1c3 100644
--- a/target/executable/featurecounts/.config.vsh.yaml
+++ b/target/executable/featurecounts/.config.vsh.yaml
@@ -645,9 +645,9 @@ build_info:
   output: "target/executable/featurecounts"
   executable: "target/executable/featurecounts/featurecounts"
   viash_version: "0.9.0"
-  git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5"
-  git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-8-g0a0edca"
+  git_commit: "add125261c6fa0ed7c9906fc85e7368d2072c4a3"
+  git_remote: "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-9-gadd1252"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/executable/featurecounts/featurecounts b/target/executable/featurecounts/featurecounts
index 9b93b90f..401aa969 100755
--- a/target/executable/featurecounts/featurecounts
+++ b/target/executable/featurecounts/featurecounts
@@ -754,9 +754,9 @@ RUN featureCounts -v 2>&1 | sed 's/featureCounts v\([0-9.]*\)/featureCounts: \1/
 
 LABEL org.opencontainers.image.authors="Sai Nirmayi Yasa"
 LABEL org.opencontainers.image.description="Companion container for running component featurecounts"
-LABEL org.opencontainers.image.created="2024-10-03T12:50:41Z"
+LABEL org.opencontainers.image.created="2024-10-07T09:07:51Z"
 LABEL org.opencontainers.image.source="https://github.com/ShiLab-Bioinformatics/subread"
-LABEL org.opencontainers.image.revision="0a0edcacb5368517d249210022363bd9265f1bf5"
+LABEL org.opencontainers.image.revision="add125261c6fa0ed7c9906fc85e7368d2072c4a3"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER
diff --git a/target/executable/fq_subsample/.config.vsh.yaml b/target/executable/fq_subsample/.config.vsh.yaml
index 0fd4d231..82bde9bc 100644
--- a/target/executable/fq_subsample/.config.vsh.yaml
+++ b/target/executable/fq_subsample/.config.vsh.yaml
@@ -190,9 +190,9 @@ build_info:
   output: "target/executable/fq_subsample"
   executable: "target/executable/fq_subsample/fq_subsample"
   viash_version: "0.9.0"
-  git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5"
-  git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-8-g0a0edca"
+  git_commit: "add125261c6fa0ed7c9906fc85e7368d2072c4a3"
+  git_remote: "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-9-gadd1252"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/executable/fq_subsample/fq_subsample b/target/executable/fq_subsample/fq_subsample
index 47b58a80..78781c10 100755
--- a/target/executable/fq_subsample/fq_subsample
+++ b/target/executable/fq_subsample/fq_subsample
@@ -493,9 +493,9 @@ mv target/release/fq /usr/local/bin/ && \
 cd / && rm -rf /fq
 
 LABEL org.opencontainers.image.description="Companion container for running component fq_subsample"
-LABEL org.opencontainers.image.created="2024-10-03T12:50:37Z"
+LABEL org.opencontainers.image.created="2024-10-07T09:07:47Z"
 LABEL org.opencontainers.image.source="https://github.com/stjude-rust-labs/fq"
-LABEL org.opencontainers.image.revision="0a0edcacb5368517d249210022363bd9265f1bf5"
+LABEL org.opencontainers.image.revision="add125261c6fa0ed7c9906fc85e7368d2072c4a3"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER
diff --git a/target/executable/gffread/.config.vsh.yaml b/target/executable/gffread/.config.vsh.yaml
index 59d97201..95ee32c6 100644
--- a/target/executable/gffread/.config.vsh.yaml
+++ b/target/executable/gffread/.config.vsh.yaml
@@ -685,9 +685,9 @@ build_info:
   output: "target/executable/gffread"
   executable: "target/executable/gffread/gffread"
   viash_version: "0.9.0"
-  git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5"
-  git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-8-g0a0edca"
+  git_commit: "add125261c6fa0ed7c9906fc85e7368d2072c4a3"
+  git_remote: "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-9-gadd1252"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/executable/gffread/gffread b/target/executable/gffread/gffread
index a183e5a8..b14b316d 100755
--- a/target/executable/gffread/gffread
+++ b/target/executable/gffread/gffread
@@ -807,9 +807,9 @@ RUN echo "gffread: \"$(gffread --version 2>&1)\"" > /var/software_versions.txt
 
 LABEL org.opencontainers.image.authors="Emma Rousseau"
 LABEL org.opencontainers.image.description="Companion container for running component gffread"
-LABEL org.opencontainers.image.created="2024-10-03T12:50:28Z"
+LABEL org.opencontainers.image.created="2024-10-07T09:07:39Z"
 LABEL org.opencontainers.image.source="https://github.com/gpertea/gffread"
-LABEL org.opencontainers.image.revision="0a0edcacb5368517d249210022363bd9265f1bf5"
+LABEL org.opencontainers.image.revision="add125261c6fa0ed7c9906fc85e7368d2072c4a3"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER
diff --git a/target/executable/kallisto/kallisto_index/.config.vsh.yaml b/target/executable/kallisto/kallisto_index/.config.vsh.yaml
index 62097afc..95533d8f 100644
--- a/target/executable/kallisto/kallisto_index/.config.vsh.yaml
+++ b/target/executable/kallisto/kallisto_index/.config.vsh.yaml
@@ -218,9 +218,9 @@ build_info:
   output: "target/executable/kallisto/kallisto_index"
   executable: "target/executable/kallisto/kallisto_index/kallisto_index"
   viash_version: "0.9.0"
-  git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5"
-  git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-8-g0a0edca"
+  git_commit: "add125261c6fa0ed7c9906fc85e7368d2072c4a3"
+  git_remote: "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-9-gadd1252"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/executable/kallisto/kallisto_index/kallisto_index b/target/executable/kallisto/kallisto_index/kallisto_index
index 1f6ca90b..764e94c8 100755
--- a/target/executable/kallisto/kallisto_index/kallisto_index
+++ b/target/executable/kallisto/kallisto_index/kallisto_index
@@ -506,9 +506,9 @@ tar -xzf kallisto_linux-v0.50.1.tar.gz && \
 mv kallisto/kallisto /usr/local/bin/
 
 LABEL org.opencontainers.image.description="Companion container for running component kallisto kallisto_index"
-LABEL org.opencontainers.image.created="2024-10-03T12:50:45Z"
+LABEL org.opencontainers.image.created="2024-10-07T09:07:55Z"
 LABEL org.opencontainers.image.source="https://github.com/pachterlab/kallisto"
-LABEL org.opencontainers.image.revision="0a0edcacb5368517d249210022363bd9265f1bf5"
+LABEL org.opencontainers.image.revision="add125261c6fa0ed7c9906fc85e7368d2072c4a3"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER
diff --git a/target/executable/kallisto/kallisto_quant/.config.vsh.yaml b/target/executable/kallisto/kallisto_quant/.config.vsh.yaml
index a408705f..295e5c5e 100644
--- a/target/executable/kallisto/kallisto_quant/.config.vsh.yaml
+++ b/target/executable/kallisto/kallisto_quant/.config.vsh.yaml
@@ -234,9 +234,9 @@ build_info:
   output: "target/executable/kallisto/kallisto_quant"
   executable: "target/executable/kallisto/kallisto_quant/kallisto_quant"
   viash_version: "0.9.0"
-  git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5"
-  git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-8-g0a0edca"
+  git_commit: "add125261c6fa0ed7c9906fc85e7368d2072c4a3"
+  git_remote: "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-9-gadd1252"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/executable/kallisto/kallisto_quant/kallisto_quant b/target/executable/kallisto/kallisto_quant/kallisto_quant
index 8cd88eb1..1bd35e09 100755
--- a/target/executable/kallisto/kallisto_quant/kallisto_quant
+++ b/target/executable/kallisto/kallisto_quant/kallisto_quant
@@ -518,9 +518,9 @@ mv kallisto/kallisto /usr/local/bin/
 RUN echo "kallisto: $(kallisto version | sed 's/kallisto, version //')" > /var/software_versions.txt
 
 LABEL org.opencontainers.image.description="Companion container for running component kallisto kallisto_quant"
-LABEL org.opencontainers.image.created="2024-10-03T12:50:45Z"
+LABEL org.opencontainers.image.created="2024-10-07T09:07:55Z"
 LABEL org.opencontainers.image.source="https://github.com/pachterlab/kallisto"
-LABEL org.opencontainers.image.revision="0a0edcacb5368517d249210022363bd9265f1bf5"
+LABEL org.opencontainers.image.revision="add125261c6fa0ed7c9906fc85e7368d2072c4a3"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER
diff --git a/target/executable/lofreq/lofreq_call/.config.vsh.yaml b/target/executable/lofreq/lofreq_call/.config.vsh.yaml
index eda4e92c..c86e5975 100644
--- a/target/executable/lofreq/lofreq_call/.config.vsh.yaml
+++ b/target/executable/lofreq/lofreq_call/.config.vsh.yaml
@@ -507,9 +507,9 @@ build_info:
   output: "target/executable/lofreq/lofreq_call"
   executable: "target/executable/lofreq/lofreq_call/lofreq_call"
   viash_version: "0.9.0"
-  git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5"
-  git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-8-g0a0edca"
+  git_commit: "add125261c6fa0ed7c9906fc85e7368d2072c4a3"
+  git_remote: "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-9-gadd1252"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/executable/lofreq/lofreq_call/lofreq_call b/target/executable/lofreq/lofreq_call/lofreq_call
index fb60a5af..442b46a3 100755
--- a/target/executable/lofreq/lofreq_call/lofreq_call
+++ b/target/executable/lofreq/lofreq_call/lofreq_call
@@ -656,9 +656,9 @@ echo "lofreq: $version" > /var/software_versions.txt
 
 LABEL org.opencontainers.image.authors="Kai Waldrant"
 LABEL org.opencontainers.image.description="Companion container for running component lofreq lofreq_call"
-LABEL org.opencontainers.image.created="2024-10-03T12:50:41Z"
+LABEL org.opencontainers.image.created="2024-10-07T09:07:50Z"
 LABEL org.opencontainers.image.source="https://github.com/viash-hub/biobox"
-LABEL org.opencontainers.image.revision="0a0edcacb5368517d249210022363bd9265f1bf5"
+LABEL org.opencontainers.image.revision="add125261c6fa0ed7c9906fc85e7368d2072c4a3"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER
diff --git a/target/executable/lofreq/lofreq_indelqual/.config.vsh.yaml b/target/executable/lofreq/lofreq_indelqual/.config.vsh.yaml
index a6c12a30..eedab650 100644
--- a/target/executable/lofreq/lofreq_indelqual/.config.vsh.yaml
+++ b/target/executable/lofreq/lofreq_indelqual/.config.vsh.yaml
@@ -215,9 +215,9 @@ build_info:
   output: "target/executable/lofreq/lofreq_indelqual"
   executable: "target/executable/lofreq/lofreq_indelqual/lofreq_indelqual"
   viash_version: "0.9.0"
-  git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5"
-  git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-8-g0a0edca"
+  git_commit: "add125261c6fa0ed7c9906fc85e7368d2072c4a3"
+  git_remote: "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-9-gadd1252"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/executable/lofreq/lofreq_indelqual/lofreq_indelqual b/target/executable/lofreq/lofreq_indelqual/lofreq_indelqual
index f8c1748d..0963d69a 100755
--- a/target/executable/lofreq/lofreq_indelqual/lofreq_indelqual
+++ b/target/executable/lofreq/lofreq_indelqual/lofreq_indelqual
@@ -501,9 +501,9 @@ echo "lofreq: $version" > /var/software_versions.txt
 
 LABEL org.opencontainers.image.authors="Kai Waldrant"
 LABEL org.opencontainers.image.description="Companion container for running component lofreq lofreq_indelqual"
-LABEL org.opencontainers.image.created="2024-10-03T12:50:40Z"
+LABEL org.opencontainers.image.created="2024-10-07T09:07:50Z"
 LABEL org.opencontainers.image.source="https://github.com/viash-hub/biobox"
-LABEL org.opencontainers.image.revision="0a0edcacb5368517d249210022363bd9265f1bf5"
+LABEL org.opencontainers.image.revision="add125261c6fa0ed7c9906fc85e7368d2072c4a3"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER
diff --git a/target/executable/multiqc/.config.vsh.yaml b/target/executable/multiqc/.config.vsh.yaml
index b5c9f3cf..38d0e93f 100644
--- a/target/executable/multiqc/.config.vsh.yaml
+++ b/target/executable/multiqc/.config.vsh.yaml
@@ -456,9 +456,9 @@ build_info:
   output: "target/executable/multiqc"
   executable: "target/executable/multiqc/multiqc"
   viash_version: "0.9.0"
-  git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5"
-  git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-8-g0a0edca"
+  git_commit: "add125261c6fa0ed7c9906fc85e7368d2072c4a3"
+  git_remote: "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-9-gadd1252"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/executable/multiqc/multiqc b/target/executable/multiqc/multiqc
index 37323654..95c49d52 100755
--- a/target/executable/multiqc/multiqc
+++ b/target/executable/multiqc/multiqc
@@ -637,9 +637,9 @@ RUN multiqc --version | sed 's/multiqc, version\s\(.*\)/multiqc: "\1"/' > /var/s
 
 LABEL org.opencontainers.image.authors="Dorien Roosen"
 LABEL org.opencontainers.image.description="Companion container for running component multiqc"
-LABEL org.opencontainers.image.created="2024-10-03T12:50:51Z"
+LABEL org.opencontainers.image.created="2024-10-07T09:08:00Z"
 LABEL org.opencontainers.image.source="https://github.com/viash-hub/biobox"
-LABEL org.opencontainers.image.revision="0a0edcacb5368517d249210022363bd9265f1bf5"
+LABEL org.opencontainers.image.revision="add125261c6fa0ed7c9906fc85e7368d2072c4a3"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER
diff --git a/target/executable/pear/.config.vsh.yaml b/target/executable/pear/.config.vsh.yaml
index b07e980d..b4ee2a80 100644
--- a/target/executable/pear/.config.vsh.yaml
+++ b/target/executable/pear/.config.vsh.yaml
@@ -398,9 +398,9 @@ build_info:
   output: "target/executable/pear"
   executable: "target/executable/pear/pear"
   viash_version: "0.9.0"
-  git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5"
-  git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-8-g0a0edca"
+  git_commit: "add125261c6fa0ed7c9906fc85e7368d2072c4a3"
+  git_remote: "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-9-gadd1252"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/executable/pear/pear b/target/executable/pear/pear
index 416ab513..48060033 100755
--- a/target/executable/pear/pear
+++ b/target/executable/pear/pear
@@ -597,9 +597,9 @@ echo "pear: $version" > /var/software_versions.txt
 
 LABEL org.opencontainers.image.authors="Kai Waldrant"
 LABEL org.opencontainers.image.description="Companion container for running component pear"
-LABEL org.opencontainers.image.created="2024-10-03T12:50:32Z"
+LABEL org.opencontainers.image.created="2024-10-07T09:07:43Z"
 LABEL org.opencontainers.image.source="https://github.com/tseemann/PEAR"
-LABEL org.opencontainers.image.revision="0a0edcacb5368517d249210022363bd9265f1bf5"
+LABEL org.opencontainers.image.revision="add125261c6fa0ed7c9906fc85e7368d2072c4a3"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER
diff --git a/target/executable/qualimap/qualimap_rnaseq/.config.vsh.yaml b/target/executable/qualimap/qualimap_rnaseq/.config.vsh.yaml
index dcfe173d..0f412f0e 100644
--- a/target/executable/qualimap/qualimap_rnaseq/.config.vsh.yaml
+++ b/target/executable/qualimap/qualimap_rnaseq/.config.vsh.yaml
@@ -264,9 +264,9 @@ build_info:
   output: "target/executable/qualimap/qualimap_rnaseq"
   executable: "target/executable/qualimap/qualimap_rnaseq/qualimap_rnaseq"
   viash_version: "0.9.0"
-  git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5"
-  git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-8-g0a0edca"
+  git_commit: "add125261c6fa0ed7c9906fc85e7368d2072c4a3"
+  git_remote: "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-9-gadd1252"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/executable/qualimap/qualimap_rnaseq/qualimap_rnaseq b/target/executable/qualimap/qualimap_rnaseq/qualimap_rnaseq
index 8fa9f9a3..9eb3d53c 100755
--- a/target/executable/qualimap/qualimap_rnaseq/qualimap_rnaseq
+++ b/target/executable/qualimap/qualimap_rnaseq/qualimap_rnaseq
@@ -527,9 +527,9 @@ RUN echo QualiMap: $(qualimap 2>&1 | grep QualiMap | sed 's/^.*QualiMap//') > /v
 
 LABEL org.opencontainers.image.authors="Dorien Roosen"
 LABEL org.opencontainers.image.description="Companion container for running component qualimap qualimap_rnaseq"
-LABEL org.opencontainers.image.created="2024-10-03T12:50:36Z"
+LABEL org.opencontainers.image.created="2024-10-07T09:07:46Z"
 LABEL org.opencontainers.image.source="https://bitbucket.org/kokonech/qualimap/commits/branch/master"
-LABEL org.opencontainers.image.revision="0a0edcacb5368517d249210022363bd9265f1bf5"
+LABEL org.opencontainers.image.revision="add125261c6fa0ed7c9906fc85e7368d2072c4a3"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER
diff --git a/target/executable/rsem/rsem_calculate_expression/.config.vsh.yaml b/target/executable/rsem/rsem_calculate_expression/.config.vsh.yaml
index 482973df..08d4e919 100644
--- a/target/executable/rsem/rsem_calculate_expression/.config.vsh.yaml
+++ b/target/executable/rsem/rsem_calculate_expression/.config.vsh.yaml
@@ -852,9 +852,9 @@ build_info:
   output: "target/executable/rsem/rsem_calculate_expression"
   executable: "target/executable/rsem/rsem_calculate_expression/rsem_calculate_expression"
   viash_version: "0.9.0"
-  git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5"
-  git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-8-g0a0edca"
+  git_commit: "add125261c6fa0ed7c9906fc85e7368d2072c4a3"
+  git_remote: "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-9-gadd1252"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/executable/rsem/rsem_calculate_expression/rsem_calculate_expression b/target/executable/rsem/rsem_calculate_expression/rsem_calculate_expression
index 6c53e620..ce727e23 100755
--- a/target/executable/rsem/rsem_calculate_expression/rsem_calculate_expression
+++ b/target/executable/rsem/rsem_calculate_expression/rsem_calculate_expression
@@ -991,9 +991,9 @@ echo "bowtie: `bowtie --version | grep -oP 'bowtie-align-s version \K\d+\.\d+\.\
 echo "HISAT2: `hisat2 --version | grep -oP 'hisat2-align-s version \K\d+\.\d+\.\d+'`" >> /var/software_versions.txt
 
 LABEL org.opencontainers.image.description="Companion container for running component rsem rsem_calculate_expression"
-LABEL org.opencontainers.image.created="2024-10-03T12:50:44Z"
+LABEL org.opencontainers.image.created="2024-10-07T09:07:54Z"
 LABEL org.opencontainers.image.source="https://github.com/deweylab/RSEM"
-LABEL org.opencontainers.image.revision="0a0edcacb5368517d249210022363bd9265f1bf5"
+LABEL org.opencontainers.image.revision="add125261c6fa0ed7c9906fc85e7368d2072c4a3"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER
diff --git a/target/executable/rsem/rsem_prepare_reference/.config.vsh.yaml b/target/executable/rsem/rsem_prepare_reference/.config.vsh.yaml
index 229961b8..f9b68bcf 100644
--- a/target/executable/rsem/rsem_prepare_reference/.config.vsh.yaml
+++ b/target/executable/rsem/rsem_prepare_reference/.config.vsh.yaml
@@ -416,9 +416,9 @@ build_info:
   output: "target/executable/rsem/rsem_prepare_reference"
   executable: "target/executable/rsem/rsem_prepare_reference/rsem_prepare_reference"
   viash_version: "0.9.0"
-  git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5"
-  git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-8-g0a0edca"
+  git_commit: "add125261c6fa0ed7c9906fc85e7368d2072c4a3"
+  git_remote: "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-9-gadd1252"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/executable/rsem/rsem_prepare_reference/rsem_prepare_reference b/target/executable/rsem/rsem_prepare_reference/rsem_prepare_reference
index 05ad3c67..ca429cdf 100755
--- a/target/executable/rsem/rsem_prepare_reference/rsem_prepare_reference
+++ b/target/executable/rsem/rsem_prepare_reference/rsem_prepare_reference
@@ -656,9 +656,9 @@ echo "HISAT2: `hisat2 --version | grep -oP 'hisat2-align-s version \K\d+\.\d+\.\
 
 LABEL org.opencontainers.image.authors="Sai Nirmayi Yasa"
 LABEL org.opencontainers.image.description="Companion container for running component rsem rsem_prepare_reference"
-LABEL org.opencontainers.image.created="2024-10-03T12:50:44Z"
+LABEL org.opencontainers.image.created="2024-10-07T09:07:54Z"
 LABEL org.opencontainers.image.source="https://github.com/deweylab/RSEM"
-LABEL org.opencontainers.image.revision="0a0edcacb5368517d249210022363bd9265f1bf5"
+LABEL org.opencontainers.image.revision="add125261c6fa0ed7c9906fc85e7368d2072c4a3"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER
diff --git a/target/executable/salmon/salmon_index/.config.vsh.yaml b/target/executable/salmon/salmon_index/.config.vsh.yaml
index 3843ecfc..4f5e78f3 100644
--- a/target/executable/salmon/salmon_index/.config.vsh.yaml
+++ b/target/executable/salmon/salmon_index/.config.vsh.yaml
@@ -277,9 +277,9 @@ build_info:
   output: "target/executable/salmon/salmon_index"
   executable: "target/executable/salmon/salmon_index/salmon_index"
   viash_version: "0.9.0"
-  git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5"
-  git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-8-g0a0edca"
+  git_commit: "add125261c6fa0ed7c9906fc85e7368d2072c4a3"
+  git_remote: "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-9-gadd1252"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/executable/salmon/salmon_index/salmon_index b/target/executable/salmon/salmon_index/salmon_index
index fbb75b36..52f9c4c7 100755
--- a/target/executable/salmon/salmon_index/salmon_index
+++ b/target/executable/salmon/salmon_index/salmon_index
@@ -546,9 +546,9 @@ RUN salmon index -v 2>&1 | sed 's/salmon \([0-9.]*\)/salmon: \1/' > /var/softwar
 
 LABEL org.opencontainers.image.authors="Sai Nirmayi Yasa"
 LABEL org.opencontainers.image.description="Companion container for running component salmon salmon_index"
-LABEL org.opencontainers.image.created="2024-10-03T12:50:50Z"
+LABEL org.opencontainers.image.created="2024-10-07T09:07:59Z"
 LABEL org.opencontainers.image.source="https://github.com/COMBINE-lab/salmon"
-LABEL org.opencontainers.image.revision="0a0edcacb5368517d249210022363bd9265f1bf5"
+LABEL org.opencontainers.image.revision="add125261c6fa0ed7c9906fc85e7368d2072c4a3"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER
diff --git a/target/executable/salmon/salmon_quant/.config.vsh.yaml b/target/executable/salmon/salmon_quant/.config.vsh.yaml
index a63cd0e4..5f6d0f92 100644
--- a/target/executable/salmon/salmon_quant/.config.vsh.yaml
+++ b/target/executable/salmon/salmon_quant/.config.vsh.yaml
@@ -1173,9 +1173,9 @@ build_info:
   output: "target/executable/salmon/salmon_quant"
   executable: "target/executable/salmon/salmon_quant/salmon_quant"
   viash_version: "0.9.0"
-  git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5"
-  git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-8-g0a0edca"
+  git_commit: "add125261c6fa0ed7c9906fc85e7368d2072c4a3"
+  git_remote: "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-9-gadd1252"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/executable/salmon/salmon_quant/salmon_quant b/target/executable/salmon/salmon_quant/salmon_quant
index fdd5f786..04de2580 100755
--- a/target/executable/salmon/salmon_quant/salmon_quant
+++ b/target/executable/salmon/salmon_quant/salmon_quant
@@ -1168,9 +1168,9 @@ RUN salmon index -v 2>&1 | sed 's/salmon \([0-9.]*\)/salmon: \1/' > /var/softwar
 
 LABEL org.opencontainers.image.authors="Sai Nirmayi Yasa"
 LABEL org.opencontainers.image.description="Companion container for running component salmon salmon_quant"
-LABEL org.opencontainers.image.created="2024-10-03T12:50:50Z"
+LABEL org.opencontainers.image.created="2024-10-07T09:07:59Z"
 LABEL org.opencontainers.image.source="https://github.com/COMBINE-lab/salmon"
-LABEL org.opencontainers.image.revision="0a0edcacb5368517d249210022363bd9265f1bf5"
+LABEL org.opencontainers.image.revision="add125261c6fa0ed7c9906fc85e7368d2072c4a3"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER
diff --git a/target/executable/samtools/samtools_collate/.config.vsh.yaml b/target/executable/samtools/samtools_collate/.config.vsh.yaml
index bc7a902d..037cd9a4 100644
--- a/target/executable/samtools/samtools_collate/.config.vsh.yaml
+++ b/target/executable/samtools/samtools_collate/.config.vsh.yaml
@@ -264,9 +264,9 @@ build_info:
   output: "target/executable/samtools/samtools_collate"
   executable: "target/executable/samtools/samtools_collate/samtools_collate"
   viash_version: "0.9.0"
-  git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5"
-  git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-8-g0a0edca"
+  git_commit: "add125261c6fa0ed7c9906fc85e7368d2072c4a3"
+  git_remote: "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-9-gadd1252"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/executable/samtools/samtools_collate/samtools_collate b/target/executable/samtools/samtools_collate/samtools_collate
index 9e09622d..4ea7ff87 100755
--- a/target/executable/samtools/samtools_collate/samtools_collate
+++ b/target/executable/samtools/samtools_collate/samtools_collate
@@ -519,9 +519,9 @@ sed 's#Using ##;s# \([0-9\.]*\)$#: \1#' > /var/software_versions.txt
 
 LABEL org.opencontainers.image.authors="Emma Rousseau"
 LABEL org.opencontainers.image.description="Companion container for running component samtools samtools_collate"
-LABEL org.opencontainers.image.created="2024-10-03T12:50:35Z"
+LABEL org.opencontainers.image.created="2024-10-07T09:07:45Z"
 LABEL org.opencontainers.image.source="https://github.com/samtools/samtools"
-LABEL org.opencontainers.image.revision="0a0edcacb5368517d249210022363bd9265f1bf5"
+LABEL org.opencontainers.image.revision="add125261c6fa0ed7c9906fc85e7368d2072c4a3"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER
diff --git a/target/executable/samtools/samtools_faidx/.config.vsh.yaml b/target/executable/samtools/samtools_faidx/.config.vsh.yaml
index da834893..a1d679e7 100644
--- a/target/executable/samtools/samtools_faidx/.config.vsh.yaml
+++ b/target/executable/samtools/samtools_faidx/.config.vsh.yaml
@@ -243,9 +243,9 @@ build_info:
   output: "target/executable/samtools/samtools_faidx"
   executable: "target/executable/samtools/samtools_faidx/samtools_faidx"
   viash_version: "0.9.0"
-  git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5"
-  git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-8-g0a0edca"
+  git_commit: "add125261c6fa0ed7c9906fc85e7368d2072c4a3"
+  git_remote: "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-9-gadd1252"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/executable/samtools/samtools_faidx/samtools_faidx b/target/executable/samtools/samtools_faidx/samtools_faidx
index 77c9969f..58e6a085 100755
--- a/target/executable/samtools/samtools_faidx/samtools_faidx
+++ b/target/executable/samtools/samtools_faidx/samtools_faidx
@@ -512,9 +512,9 @@ sed 's#Using ##;s# \([0-9\.]*\)$#: \1#' > /var/software_versions.txt
 
 LABEL org.opencontainers.image.authors="Emma Rousseau"
 LABEL org.opencontainers.image.description="Companion container for running component samtools samtools_faidx"
-LABEL org.opencontainers.image.created="2024-10-03T12:50:34Z"
+LABEL org.opencontainers.image.created="2024-10-07T09:07:45Z"
 LABEL org.opencontainers.image.source="https://github.com/samtools/samtools"
-LABEL org.opencontainers.image.revision="0a0edcacb5368517d249210022363bd9265f1bf5"
+LABEL org.opencontainers.image.revision="add125261c6fa0ed7c9906fc85e7368d2072c4a3"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER
diff --git a/target/executable/samtools/samtools_fasta/.config.vsh.yaml b/target/executable/samtools/samtools_fasta/.config.vsh.yaml
index c6bf9fe1..6f0addef 100644
--- a/target/executable/samtools/samtools_fasta/.config.vsh.yaml
+++ b/target/executable/samtools/samtools_fasta/.config.vsh.yaml
@@ -433,9 +433,9 @@ build_info:
   output: "target/executable/samtools/samtools_fasta"
   executable: "target/executable/samtools/samtools_fasta/samtools_fasta"
   viash_version: "0.9.0"
-  git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5"
-  git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-8-g0a0edca"
+  git_commit: "add125261c6fa0ed7c9906fc85e7368d2072c4a3"
+  git_remote: "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-9-gadd1252"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/executable/samtools/samtools_fasta/samtools_fasta b/target/executable/samtools/samtools_fasta/samtools_fasta
index f801ba4e..d8482873 100755
--- a/target/executable/samtools/samtools_fasta/samtools_fasta
+++ b/target/executable/samtools/samtools_fasta/samtools_fasta
@@ -625,9 +625,9 @@ sed 's#Using ##;s# \([0-9\.]*\)$#: \1#' > /var/software_versions.txt
 
 LABEL org.opencontainers.image.authors="Emma Rousseau"
 LABEL org.opencontainers.image.description="Companion container for running component samtools samtools_fasta"
-LABEL org.opencontainers.image.created="2024-10-03T12:50:35Z"
+LABEL org.opencontainers.image.created="2024-10-07T09:07:45Z"
 LABEL org.opencontainers.image.source="https://github.com/samtools/samtools"
-LABEL org.opencontainers.image.revision="0a0edcacb5368517d249210022363bd9265f1bf5"
+LABEL org.opencontainers.image.revision="add125261c6fa0ed7c9906fc85e7368d2072c4a3"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER
diff --git a/target/executable/samtools/samtools_fastq/.config.vsh.yaml b/target/executable/samtools/samtools_fastq/.config.vsh.yaml
index 8bf718de..923cadd7 100644
--- a/target/executable/samtools/samtools_fastq/.config.vsh.yaml
+++ b/target/executable/samtools/samtools_fastq/.config.vsh.yaml
@@ -433,9 +433,9 @@ build_info:
   output: "target/executable/samtools/samtools_fastq"
   executable: "target/executable/samtools/samtools_fastq/samtools_fastq"
   viash_version: "0.9.0"
-  git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5"
-  git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-8-g0a0edca"
+  git_commit: "add125261c6fa0ed7c9906fc85e7368d2072c4a3"
+  git_remote: "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-9-gadd1252"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/executable/samtools/samtools_fastq/samtools_fastq b/target/executable/samtools/samtools_fastq/samtools_fastq
index 5a6857e1..61bba02a 100755
--- a/target/executable/samtools/samtools_fastq/samtools_fastq
+++ b/target/executable/samtools/samtools_fastq/samtools_fastq
@@ -626,9 +626,9 @@ sed 's#Using ##;s# \([0-9\.]*\)$#: \1#' > /var/software_versions.txt
 
 LABEL org.opencontainers.image.authors="Emma Rousseau"
 LABEL org.opencontainers.image.description="Companion container for running component samtools samtools_fastq"
-LABEL org.opencontainers.image.created="2024-10-03T12:50:34Z"
+LABEL org.opencontainers.image.created="2024-10-07T09:07:44Z"
 LABEL org.opencontainers.image.source="https://github.com/samtools/samtools"
-LABEL org.opencontainers.image.revision="0a0edcacb5368517d249210022363bd9265f1bf5"
+LABEL org.opencontainers.image.revision="add125261c6fa0ed7c9906fc85e7368d2072c4a3"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER
diff --git a/target/executable/samtools/samtools_flagstat/.config.vsh.yaml b/target/executable/samtools/samtools_flagstat/.config.vsh.yaml
index d827b560..a13aeed8 100644
--- a/target/executable/samtools/samtools_flagstat/.config.vsh.yaml
+++ b/target/executable/samtools/samtools_flagstat/.config.vsh.yaml
@@ -173,9 +173,9 @@ build_info:
   output: "target/executable/samtools/samtools_flagstat"
   executable: "target/executable/samtools/samtools_flagstat/samtools_flagstat"
   viash_version: "0.9.0"
-  git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5"
-  git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-8-g0a0edca"
+  git_commit: "add125261c6fa0ed7c9906fc85e7368d2072c4a3"
+  git_remote: "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-9-gadd1252"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/executable/samtools/samtools_flagstat/samtools_flagstat b/target/executable/samtools/samtools_flagstat/samtools_flagstat
index 993b835f..4b78c4b4 100755
--- a/target/executable/samtools/samtools_flagstat/samtools_flagstat
+++ b/target/executable/samtools/samtools_flagstat/samtools_flagstat
@@ -474,9 +474,9 @@ sed 's#Using ##;s# \([0-9\.]*\)$#: \1#' > /var/software_versions.txt
 
 LABEL org.opencontainers.image.authors="Emma Rousseau"
 LABEL org.opencontainers.image.description="Companion container for running component samtools samtools_flagstat"
-LABEL org.opencontainers.image.created="2024-10-03T12:50:34Z"
+LABEL org.opencontainers.image.created="2024-10-07T09:07:44Z"
 LABEL org.opencontainers.image.source="https://github.com/samtools/samtools"
-LABEL org.opencontainers.image.revision="0a0edcacb5368517d249210022363bd9265f1bf5"
+LABEL org.opencontainers.image.revision="add125261c6fa0ed7c9906fc85e7368d2072c4a3"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER
diff --git a/target/executable/samtools/samtools_idxstats/.config.vsh.yaml b/target/executable/samtools/samtools_idxstats/.config.vsh.yaml
index 799987aa..b944c2ae 100644
--- a/target/executable/samtools/samtools_idxstats/.config.vsh.yaml
+++ b/target/executable/samtools/samtools_idxstats/.config.vsh.yaml
@@ -183,9 +183,9 @@ build_info:
   output: "target/executable/samtools/samtools_idxstats"
   executable: "target/executable/samtools/samtools_idxstats/samtools_idxstats"
   viash_version: "0.9.0"
-  git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5"
-  git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-8-g0a0edca"
+  git_commit: "add125261c6fa0ed7c9906fc85e7368d2072c4a3"
+  git_remote: "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-9-gadd1252"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/executable/samtools/samtools_idxstats/samtools_idxstats b/target/executable/samtools/samtools_idxstats/samtools_idxstats
index a1eefa05..9916b948 100755
--- a/target/executable/samtools/samtools_idxstats/samtools_idxstats
+++ b/target/executable/samtools/samtools_idxstats/samtools_idxstats
@@ -478,9 +478,9 @@ sed 's#Using ##;s# \([0-9\.]*\)$#: \1#' > /var/software_versions.txt
 
 LABEL org.opencontainers.image.authors="Emma Rousseau"
 LABEL org.opencontainers.image.description="Companion container for running component samtools samtools_idxstats"
-LABEL org.opencontainers.image.created="2024-10-03T12:50:33Z"
+LABEL org.opencontainers.image.created="2024-10-07T09:07:43Z"
 LABEL org.opencontainers.image.source="https://github.com/samtools/samtools"
-LABEL org.opencontainers.image.revision="0a0edcacb5368517d249210022363bd9265f1bf5"
+LABEL org.opencontainers.image.revision="add125261c6fa0ed7c9906fc85e7368d2072c4a3"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER
diff --git a/target/executable/samtools/samtools_index/.config.vsh.yaml b/target/executable/samtools/samtools_index/.config.vsh.yaml
index 5827b1c6..bc9e8f5a 100644
--- a/target/executable/samtools/samtools_index/.config.vsh.yaml
+++ b/target/executable/samtools/samtools_index/.config.vsh.yaml
@@ -189,9 +189,9 @@ build_info:
   output: "target/executable/samtools/samtools_index"
   executable: "target/executable/samtools/samtools_index/samtools_index"
   viash_version: "0.9.0"
-  git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5"
-  git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-8-g0a0edca"
+  git_commit: "add125261c6fa0ed7c9906fc85e7368d2072c4a3"
+  git_remote: "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-9-gadd1252"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/executable/samtools/samtools_index/samtools_index b/target/executable/samtools/samtools_index/samtools_index
index d86196f8..c68a7feb 100755
--- a/target/executable/samtools/samtools_index/samtools_index
+++ b/target/executable/samtools/samtools_index/samtools_index
@@ -485,9 +485,9 @@ sed 's#Using ##;s# \([0-9\.]*\)$#: \1#' > /var/software_versions.txt
 
 LABEL org.opencontainers.image.authors="Emma Rousseau"
 LABEL org.opencontainers.image.description="Companion container for running component samtools samtools_index"
-LABEL org.opencontainers.image.created="2024-10-03T12:50:33Z"
+LABEL org.opencontainers.image.created="2024-10-07T09:07:43Z"
 LABEL org.opencontainers.image.source="https://github.com/samtools/samtools"
-LABEL org.opencontainers.image.revision="0a0edcacb5368517d249210022363bd9265f1bf5"
+LABEL org.opencontainers.image.revision="add125261c6fa0ed7c9906fc85e7368d2072c4a3"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER
diff --git a/target/executable/samtools/samtools_sort/.config.vsh.yaml b/target/executable/samtools/samtools_sort/.config.vsh.yaml
index c223a3ef..9f19b707 100644
--- a/target/executable/samtools/samtools_sort/.config.vsh.yaml
+++ b/target/executable/samtools/samtools_sort/.config.vsh.yaml
@@ -332,9 +332,9 @@ build_info:
   output: "target/executable/samtools/samtools_sort"
   executable: "target/executable/samtools/samtools_sort/samtools_sort"
   viash_version: "0.9.0"
-  git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5"
-  git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-8-g0a0edca"
+  git_commit: "add125261c6fa0ed7c9906fc85e7368d2072c4a3"
+  git_remote: "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-9-gadd1252"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/executable/samtools/samtools_sort/samtools_sort b/target/executable/samtools/samtools_sort/samtools_sort
index 0fb8cf08..20568b56 100755
--- a/target/executable/samtools/samtools_sort/samtools_sort
+++ b/target/executable/samtools/samtools_sort/samtools_sort
@@ -556,9 +556,9 @@ sed 's#Using ##;s# \([0-9\.]*\)$#: \1#' > /var/software_versions.txt
 
 LABEL org.opencontainers.image.authors="Emma Rousseau"
 LABEL org.opencontainers.image.description="Companion container for running component samtools samtools_sort"
-LABEL org.opencontainers.image.created="2024-10-03T12:50:35Z"
+LABEL org.opencontainers.image.created="2024-10-07T09:07:46Z"
 LABEL org.opencontainers.image.source="https://github.com/samtools/samtools"
-LABEL org.opencontainers.image.revision="0a0edcacb5368517d249210022363bd9265f1bf5"
+LABEL org.opencontainers.image.revision="add125261c6fa0ed7c9906fc85e7368d2072c4a3"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER
diff --git a/target/executable/samtools/samtools_stats/.config.vsh.yaml b/target/executable/samtools/samtools_stats/.config.vsh.yaml
index 964f5aaf..bab33a5c 100644
--- a/target/executable/samtools/samtools_stats/.config.vsh.yaml
+++ b/target/executable/samtools/samtools_stats/.config.vsh.yaml
@@ -401,9 +401,9 @@ build_info:
   output: "target/executable/samtools/samtools_stats"
   executable: "target/executable/samtools/samtools_stats/samtools_stats"
   viash_version: "0.9.0"
-  git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5"
-  git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-8-g0a0edca"
+  git_commit: "add125261c6fa0ed7c9906fc85e7368d2072c4a3"
+  git_remote: "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-9-gadd1252"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/executable/samtools/samtools_stats/samtools_stats b/target/executable/samtools/samtools_stats/samtools_stats
index 6be765f3..90ec5221 100755
--- a/target/executable/samtools/samtools_stats/samtools_stats
+++ b/target/executable/samtools/samtools_stats/samtools_stats
@@ -575,9 +575,9 @@ sed 's#Using ##;s# \([0-9\.]*\)$#: \1#' > /var/software_versions.txt
 
 LABEL org.opencontainers.image.authors="Emma Rousseau"
 LABEL org.opencontainers.image.description="Companion container for running component samtools samtools_stats"
-LABEL org.opencontainers.image.created="2024-10-03T12:50:36Z"
+LABEL org.opencontainers.image.created="2024-10-07T09:07:46Z"
 LABEL org.opencontainers.image.source="https://github.com/samtools/samtools"
-LABEL org.opencontainers.image.revision="0a0edcacb5368517d249210022363bd9265f1bf5"
+LABEL org.opencontainers.image.revision="add125261c6fa0ed7c9906fc85e7368d2072c4a3"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER
diff --git a/target/executable/samtools/samtools_view/.config.vsh.yaml b/target/executable/samtools/samtools_view/.config.vsh.yaml
index a4294746..393aba39 100644
--- a/target/executable/samtools/samtools_view/.config.vsh.yaml
+++ b/target/executable/samtools/samtools_view/.config.vsh.yaml
@@ -665,9 +665,9 @@ build_info:
   output: "target/executable/samtools/samtools_view"
   executable: "target/executable/samtools/samtools_view/samtools_view"
   viash_version: "0.9.0"
-  git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5"
-  git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-8-g0a0edca"
+  git_commit: "add125261c6fa0ed7c9906fc85e7368d2072c4a3"
+  git_remote: "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-9-gadd1252"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/executable/samtools/samtools_view/samtools_view b/target/executable/samtools/samtools_view/samtools_view
index db56ed73..244e97ad 100755
--- a/target/executable/samtools/samtools_view/samtools_view
+++ b/target/executable/samtools/samtools_view/samtools_view
@@ -825,9 +825,9 @@ sed 's#Using ##;s# \([0-9\.]*\)$#: \1#' > /var/software_versions.txt
 
 LABEL org.opencontainers.image.authors="Emma Rousseau"
 LABEL org.opencontainers.image.description="Companion container for running component samtools samtools_view"
-LABEL org.opencontainers.image.created="2024-10-03T12:50:33Z"
+LABEL org.opencontainers.image.created="2024-10-07T09:07:44Z"
 LABEL org.opencontainers.image.source="https://github.com/samtools/samtools"
-LABEL org.opencontainers.image.revision="0a0edcacb5368517d249210022363bd9265f1bf5"
+LABEL org.opencontainers.image.revision="add125261c6fa0ed7c9906fc85e7368d2072c4a3"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER
diff --git a/target/executable/seqtk/seqtk_sample/.config.vsh.yaml b/target/executable/seqtk/seqtk_sample/.config.vsh.yaml
index 87642105..23a239ff 100644
--- a/target/executable/seqtk/seqtk_sample/.config.vsh.yaml
+++ b/target/executable/seqtk/seqtk_sample/.config.vsh.yaml
@@ -173,9 +173,9 @@ build_info:
   output: "target/executable/seqtk/seqtk_sample"
   executable: "target/executable/seqtk/seqtk_sample/seqtk_sample"
   viash_version: "0.9.0"
-  git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5"
-  git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-8-g0a0edca"
+  git_commit: "add125261c6fa0ed7c9906fc85e7368d2072c4a3"
+  git_remote: "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-9-gadd1252"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/executable/seqtk/seqtk_sample/seqtk_sample b/target/executable/seqtk/seqtk_sample/seqtk_sample
index c3b8329d..c90db98d 100755
--- a/target/executable/seqtk/seqtk_sample/seqtk_sample
+++ b/target/executable/seqtk/seqtk_sample/seqtk_sample
@@ -481,9 +481,9 @@ FROM quay.io/biocontainers/seqtk:1.4--he4a0461_2
 ENTRYPOINT []
 LABEL org.opencontainers.image.authors="Jakub Majercik"
 LABEL org.opencontainers.image.description="Companion container for running component seqtk seqtk_sample"
-LABEL org.opencontainers.image.created="2024-10-03T12:50:53Z"
+LABEL org.opencontainers.image.created="2024-10-07T09:08:02Z"
 LABEL org.opencontainers.image.source="https://github.com/lh3/seqtk/tree/v1.4"
-LABEL org.opencontainers.image.revision="0a0edcacb5368517d249210022363bd9265f1bf5"
+LABEL org.opencontainers.image.revision="add125261c6fa0ed7c9906fc85e7368d2072c4a3"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER
diff --git a/target/executable/seqtk/seqtk_subseq/.config.vsh.yaml b/target/executable/seqtk/seqtk_subseq/.config.vsh.yaml
index 4d170589..3f55a1d9 100644
--- a/target/executable/seqtk/seqtk_subseq/.config.vsh.yaml
+++ b/target/executable/seqtk/seqtk_subseq/.config.vsh.yaml
@@ -196,9 +196,9 @@ build_info:
   output: "target/executable/seqtk/seqtk_subseq"
   executable: "target/executable/seqtk/seqtk_subseq/seqtk_subseq"
   viash_version: "0.9.0"
-  git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5"
-  git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-8-g0a0edca"
+  git_commit: "add125261c6fa0ed7c9906fc85e7368d2072c4a3"
+  git_remote: "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-9-gadd1252"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/executable/seqtk/seqtk_subseq/seqtk_subseq b/target/executable/seqtk/seqtk_subseq/seqtk_subseq
index 077ce1d2..2441152c 100755
--- a/target/executable/seqtk/seqtk_subseq/seqtk_subseq
+++ b/target/executable/seqtk/seqtk_subseq/seqtk_subseq
@@ -491,9 +491,9 @@ RUN echo $(echo $(seqtk 2>&1) | sed -n 's/.*\(Version: [^ ]*\).*/\1/p') > /var/s
 
 LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo"
 LABEL org.opencontainers.image.description="Companion container for running component seqtk seqtk_subseq"
-LABEL org.opencontainers.image.created="2024-10-03T12:50:53Z"
+LABEL org.opencontainers.image.created="2024-10-07T09:08:02Z"
 LABEL org.opencontainers.image.source="https://github.com/lh3/seqtk/tree/v1.4"
-LABEL org.opencontainers.image.revision="0a0edcacb5368517d249210022363bd9265f1bf5"
+LABEL org.opencontainers.image.revision="add125261c6fa0ed7c9906fc85e7368d2072c4a3"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER
diff --git a/target/executable/sortmerna/.config.vsh.yaml b/target/executable/sortmerna/.config.vsh.yaml
index 0cb8b64d..2273fb6a 100644
--- a/target/executable/sortmerna/.config.vsh.yaml
+++ b/target/executable/sortmerna/.config.vsh.yaml
@@ -591,9 +591,9 @@ build_info:
   output: "target/executable/sortmerna"
   executable: "target/executable/sortmerna/sortmerna"
   viash_version: "0.9.0"
-  git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5"
-  git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-8-g0a0edca"
+  git_commit: "add125261c6fa0ed7c9906fc85e7368d2072c4a3"
+  git_remote: "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-9-gadd1252"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/executable/sortmerna/sortmerna b/target/executable/sortmerna/sortmerna
index 260de9c4..c0ae6e54 100755
--- a/target/executable/sortmerna/sortmerna
+++ b/target/executable/sortmerna/sortmerna
@@ -744,9 +744,9 @@ wget --no-check-certificate https://github.com/sortmerna/sortmerna/releases/down
 bash sortmerna-4.3.6-Linux.sh --skip-license
 
 LABEL org.opencontainers.image.description="Companion container for running component sortmerna"
-LABEL org.opencontainers.image.created="2024-10-03T12:50:49Z"
+LABEL org.opencontainers.image.created="2024-10-07T09:07:58Z"
 LABEL org.opencontainers.image.source="https://github.com/sortmerna/sortmerna"
-LABEL org.opencontainers.image.revision="0a0edcacb5368517d249210022363bd9265f1bf5"
+LABEL org.opencontainers.image.revision="add125261c6fa0ed7c9906fc85e7368d2072c4a3"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER
diff --git a/target/executable/star/star_align_reads/.config.vsh.yaml b/target/executable/star/star_align_reads/.config.vsh.yaml
index 0448b687..7a7323bb 100644
--- a/target/executable/star/star_align_reads/.config.vsh.yaml
+++ b/target/executable/star/star_align_reads/.config.vsh.yaml
@@ -2663,9 +2663,9 @@ build_info:
   output: "target/executable/star/star_align_reads"
   executable: "target/executable/star/star_align_reads/star_align_reads"
   viash_version: "0.9.0"
-  git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5"
-  git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-8-g0a0edca"
+  git_commit: "add125261c6fa0ed7c9906fc85e7368d2072c4a3"
+  git_remote: "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-9-gadd1252"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/executable/star/star_align_reads/star_align_reads b/target/executable/star/star_align_reads/star_align_reads
index fc25134b..4783d5c7 100755
--- a/target/executable/star/star_align_reads/star_align_reads
+++ b/target/executable/star/star_align_reads/star_align_reads
@@ -1920,9 +1920,9 @@ RUN STAR --version | sed 's#\(.*\)#star: "\1"#' > /var/software_versions.txt
 
 LABEL org.opencontainers.image.authors="Angela Oliveira Pisco, Robrecht Cannoodt"
 LABEL org.opencontainers.image.description="Companion container for running component star star_align_reads"
-LABEL org.opencontainers.image.created="2024-10-03T12:50:42Z"
+LABEL org.opencontainers.image.created="2024-10-07T09:07:52Z"
 LABEL org.opencontainers.image.source="https://github.com/alexdobin/STAR"
-LABEL org.opencontainers.image.revision="0a0edcacb5368517d249210022363bd9265f1bf5"
+LABEL org.opencontainers.image.revision="add125261c6fa0ed7c9906fc85e7368d2072c4a3"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER
diff --git a/target/executable/star/star_genome_generate/.config.vsh.yaml b/target/executable/star/star_genome_generate/.config.vsh.yaml
index 644b0c12..868d53b6 100644
--- a/target/executable/star/star_genome_generate/.config.vsh.yaml
+++ b/target/executable/star/star_genome_generate/.config.vsh.yaml
@@ -333,9 +333,9 @@ build_info:
   output: "target/executable/star/star_genome_generate"
   executable: "target/executable/star/star_genome_generate/star_genome_generate"
   viash_version: "0.9.0"
-  git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5"
-  git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-8-g0a0edca"
+  git_commit: "add125261c6fa0ed7c9906fc85e7368d2072c4a3"
+  git_remote: "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-9-gadd1252"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/executable/star/star_genome_generate/star_genome_generate b/target/executable/star/star_genome_generate/star_genome_generate
index 536008d3..91d5f854 100755
--- a/target/executable/star/star_genome_generate/star_genome_generate
+++ b/target/executable/star/star_genome_generate/star_genome_generate
@@ -577,9 +577,9 @@ RUN STAR --version | sed 's#\(.*\)#star: "\1"#' > /var/software_versions.txt
 
 LABEL org.opencontainers.image.authors="Sai Nirmayi Yasa"
 LABEL org.opencontainers.image.description="Companion container for running component star star_genome_generate"
-LABEL org.opencontainers.image.created="2024-10-03T12:50:41Z"
+LABEL org.opencontainers.image.created="2024-10-07T09:07:51Z"
 LABEL org.opencontainers.image.source="https://github.com/alexdobin/STAR"
-LABEL org.opencontainers.image.revision="0a0edcacb5368517d249210022363bd9265f1bf5"
+LABEL org.opencontainers.image.revision="add125261c6fa0ed7c9906fc85e7368d2072c4a3"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER
diff --git a/target/executable/trimgalore/.config.vsh.yaml b/target/executable/trimgalore/.config.vsh.yaml
index 5b17cdea..f281c3b0 100644
--- a/target/executable/trimgalore/.config.vsh.yaml
+++ b/target/executable/trimgalore/.config.vsh.yaml
@@ -770,9 +770,9 @@ build_info:
   output: "target/executable/trimgalore"
   executable: "target/executable/trimgalore/trimgalore"
   viash_version: "0.9.0"
-  git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5"
-  git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-8-g0a0edca"
+  git_commit: "add125261c6fa0ed7c9906fc85e7368d2072c4a3"
+  git_remote: "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-9-gadd1252"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/executable/trimgalore/trimgalore b/target/executable/trimgalore/trimgalore
index e7ce0dfb..a6845d0c 100755
--- a/target/executable/trimgalore/trimgalore
+++ b/target/executable/trimgalore/trimgalore
@@ -881,9 +881,9 @@ RUN echo "TrimGalore: `trim_galore --version | sed -n 's/.*version\s\+\([0-9]\+\
 
 LABEL org.opencontainers.image.authors="Sai Nirmayi Yasa"
 LABEL org.opencontainers.image.description="Companion container for running component trimgalore"
-LABEL org.opencontainers.image.created="2024-10-03T12:50:47Z"
+LABEL org.opencontainers.image.created="2024-10-07T09:07:57Z"
 LABEL org.opencontainers.image.source="https://github.com/FelixKrueger/TrimGalore"
-LABEL org.opencontainers.image.revision="0a0edcacb5368517d249210022363bd9265f1bf5"
+LABEL org.opencontainers.image.revision="add125261c6fa0ed7c9906fc85e7368d2072c4a3"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER
diff --git a/target/executable/umi_tools/umi_tools_dedup/.config.vsh.yaml b/target/executable/umi_tools/umi_tools_dedup/.config.vsh.yaml
index 452956f8..244e5a2b 100644
--- a/target/executable/umi_tools/umi_tools_dedup/.config.vsh.yaml
+++ b/target/executable/umi_tools/umi_tools_dedup/.config.vsh.yaml
@@ -611,9 +611,9 @@ build_info:
   output: "target/executable/umi_tools/umi_tools_dedup"
   executable: "target/executable/umi_tools/umi_tools_dedup/umi_tools_dedup"
   viash_version: "0.9.0"
-  git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5"
-  git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-8-g0a0edca"
+  git_commit: "add125261c6fa0ed7c9906fc85e7368d2072c4a3"
+  git_remote: "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-9-gadd1252"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/executable/umi_tools/umi_tools_dedup/umi_tools_dedup b/target/executable/umi_tools/umi_tools_dedup/umi_tools_dedup
index cd89c57b..71b86cc4 100755
--- a/target/executable/umi_tools/umi_tools_dedup/umi_tools_dedup
+++ b/target/executable/umi_tools/umi_tools_dedup/umi_tools_dedup
@@ -770,9 +770,9 @@ RUN umi_tools -v | sed 's/ version//g' > /var/software_versions.txt
 
 LABEL org.opencontainers.image.authors="Emma Rousseau"
 LABEL org.opencontainers.image.description="Companion container for running component umi_tools umi_tools_dedup"
-LABEL org.opencontainers.image.created="2024-10-03T12:50:38Z"
+LABEL org.opencontainers.image.created="2024-10-07T09:07:48Z"
 LABEL org.opencontainers.image.source="https://github.com/CGATOxford/UMI-tools"
-LABEL org.opencontainers.image.revision="0a0edcacb5368517d249210022363bd9265f1bf5"
+LABEL org.opencontainers.image.revision="add125261c6fa0ed7c9906fc85e7368d2072c4a3"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER
diff --git a/target/executable/umi_tools/umi_tools_extract/.config.vsh.yaml b/target/executable/umi_tools/umi_tools_extract/.config.vsh.yaml
index d76af757..0ca55ead 100644
--- a/target/executable/umi_tools/umi_tools_extract/.config.vsh.yaml
+++ b/target/executable/umi_tools/umi_tools_extract/.config.vsh.yaml
@@ -449,9 +449,9 @@ build_info:
   output: "target/executable/umi_tools/umi_tools_extract"
   executable: "target/executable/umi_tools/umi_tools_extract/umi_tools_extract"
   viash_version: "0.9.0"
-  git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5"
-  git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-8-g0a0edca"
+  git_commit: "add125261c6fa0ed7c9906fc85e7368d2072c4a3"
+  git_remote: "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-9-gadd1252"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/executable/umi_tools/umi_tools_extract/umi_tools_extract b/target/executable/umi_tools/umi_tools_extract/umi_tools_extract
index fae641d4..0bcb7ca3 100755
--- a/target/executable/umi_tools/umi_tools_extract/umi_tools_extract
+++ b/target/executable/umi_tools/umi_tools_extract/umi_tools_extract
@@ -637,9 +637,9 @@ ENTRYPOINT []
 RUN umi_tools -v | sed 's/ version//g' > /var/software_versions.txt
 
 LABEL org.opencontainers.image.description="Companion container for running component umi_tools umi_tools_extract"
-LABEL org.opencontainers.image.created="2024-10-03T12:50:37Z"
+LABEL org.opencontainers.image.created="2024-10-07T09:07:47Z"
 LABEL org.opencontainers.image.source="https://github.com/CGATOxford/UMI-tools"
-LABEL org.opencontainers.image.revision="0a0edcacb5368517d249210022363bd9265f1bf5"
+LABEL org.opencontainers.image.revision="add125261c6fa0ed7c9906fc85e7368d2072c4a3"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER
diff --git a/target/executable/umi_tools/umi_tools_prepareforrsem/.config.vsh.yaml b/target/executable/umi_tools/umi_tools_prepareforrsem/.config.vsh.yaml
index 0e380819..4b4a92e4 100644
--- a/target/executable/umi_tools/umi_tools_prepareforrsem/.config.vsh.yaml
+++ b/target/executable/umi_tools/umi_tools_prepareforrsem/.config.vsh.yaml
@@ -256,9 +256,9 @@ build_info:
   output: "target/executable/umi_tools/umi_tools_prepareforrsem"
   executable: "target/executable/umi_tools/umi_tools_prepareforrsem/umi_tools_prepareforrsem"
   viash_version: "0.9.0"
-  git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5"
-  git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-8-g0a0edca"
+  git_commit: "add125261c6fa0ed7c9906fc85e7368d2072c4a3"
+  git_remote: "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-9-gadd1252"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/executable/umi_tools/umi_tools_prepareforrsem/umi_tools_prepareforrsem b/target/executable/umi_tools/umi_tools_prepareforrsem/umi_tools_prepareforrsem
index 927a7be9..99601c5a 100755
--- a/target/executable/umi_tools/umi_tools_prepareforrsem/umi_tools_prepareforrsem
+++ b/target/executable/umi_tools/umi_tools_prepareforrsem/umi_tools_prepareforrsem
@@ -519,9 +519,9 @@ ENTRYPOINT []
 RUN umi_tools -v | sed 's/ version//g' > /var/software_versions.txt
 
 LABEL org.opencontainers.image.description="Companion container for running component umi_tools umi_tools_prepareforrsem"
-LABEL org.opencontainers.image.created="2024-10-03T12:50:38Z"
+LABEL org.opencontainers.image.created="2024-10-07T09:07:48Z"
 LABEL org.opencontainers.image.source="https://github.com/CGATOxford/UMI-tools"
-LABEL org.opencontainers.image.revision="0a0edcacb5368517d249210022363bd9265f1bf5"
+LABEL org.opencontainers.image.revision="add125261c6fa0ed7c9906fc85e7368d2072c4a3"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER
diff --git a/target/nextflow/agat/agat_convert_bed2gff/.config.vsh.yaml b/target/nextflow/agat/agat_convert_bed2gff/.config.vsh.yaml
index 1dd9a2ca..43570422 100644
--- a/target/nextflow/agat/agat_convert_bed2gff/.config.vsh.yaml
+++ b/target/nextflow/agat/agat_convert_bed2gff/.config.vsh.yaml
@@ -75,7 +75,7 @@ argument_groups:
     direction: "input"
     multiple: false
     multiple_sep: ";"
-  - type: "boolean_false"
+  - type: "boolean_true"
     name: "--inflate_off"
     description: "By default we inflate the block fields (blockCount, blockSizes,\
       \ blockStarts) to create subfeatures of the main feature (primary_tag). The\
@@ -235,9 +235,9 @@ build_info:
   output: "target/nextflow/agat/agat_convert_bed2gff"
   executable: "target/nextflow/agat/agat_convert_bed2gff/main.nf"
   viash_version: "0.9.0"
-  git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5"
-  git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-8-g0a0edca"
+  git_commit: "add125261c6fa0ed7c9906fc85e7368d2072c4a3"
+  git_remote: "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-9-gadd1252"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/nextflow/agat/agat_convert_bed2gff/main.nf b/target/nextflow/agat/agat_convert_bed2gff/main.nf
index 478ceb2c..9e7fcd4a 100644
--- a/target/nextflow/agat/agat_convert_bed2gff/main.nf
+++ b/target/nextflow/agat/agat_convert_bed2gff/main.nf
@@ -2906,7 +2906,7 @@ meta = [
           "multiple_sep" : ";"
         },
         {
-          "type" : "boolean_false",
+          "type" : "boolean_true",
           "name" : "--inflate_off",
           "description" : "By default we inflate the block fields (blockCount, blockSizes, blockStarts) to create subfeatures of the main feature (primary_tag). The type of subfeature created is based on the inflate_type parameter. If you do not want this inflating behaviour you can deactivate it by using the --inflate_off option.\n",
           "direction" : "input"
@@ -3092,9 +3092,9 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/agat/agat_convert_bed2gff",
     "viash_version" : "0.9.0",
-    "git_commit" : "0a0edcacb5368517d249210022363bd9265f1bf5",
-    "git_remote" : "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox",
-    "git_tag" : "v0.2.0-8-g0a0edca"
+    "git_commit" : "add125261c6fa0ed7c9906fc85e7368d2072c4a3",
+    "git_remote" : "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox",
+    "git_tag" : "v0.2.0-9-gadd1252"
   },
   "package_config" : {
     "name" : "biobox",
@@ -3167,7 +3167,7 @@ $( if [ ! -z ${VIASH_META_MEMORY_PIB+x} ]; then echo "${VIASH_META_MEMORY_PIB}"
 ## VIASH END
 
 # unset flags
-[[ "\\$par_inflate_off" == "true" ]] && unset par_inflate_off
+[[ "\\$par_inflate_off" == "false" ]] && unset par_inflate_off
 [[ "\\$par_verbose" == "false" ]] && unset par_verbose
 
 # run agat_convert_sp_bed2gff.pl
diff --git a/target/nextflow/agat/agat_convert_bed2gff/nextflow_schema.json b/target/nextflow/agat/agat_convert_bed2gff/nextflow_schema.json
index adbab28f..fda7e7f6 100644
--- a/target/nextflow/agat/agat_convert_bed2gff/nextflow_schema.json
+++ b/target/nextflow/agat/agat_convert_bed2gff/nextflow_schema.json
@@ -78,10 +78,10 @@
                 "inflate_off": {
                 "type":
                 "boolean",
-                "description": "Type: `boolean_false`, default: `true`. By default we inflate the block fields (blockCount, blockSizes, blockStarts) to create subfeatures of the main feature (primary_tag)",
-                "help_text": "Type: `boolean_false`, default: `true`. By default we inflate the block fields (blockCount, blockSizes, blockStarts) to create subfeatures of the main feature (primary_tag). The type of subfeature created is based on the inflate_type parameter. If you do not want this inflating behaviour you can deactivate it by using the --inflate_off option.\n"
+                "description": "Type: `boolean_true`, default: `false`. By default we inflate the block fields (blockCount, blockSizes, blockStarts) to create subfeatures of the main feature (primary_tag)",
+                "help_text": "Type: `boolean_true`, default: `false`. By default we inflate the block fields (blockCount, blockSizes, blockStarts) to create subfeatures of the main feature (primary_tag). The type of subfeature created is based on the inflate_type parameter. If you do not want this inflating behaviour you can deactivate it by using the --inflate_off option.\n"
             ,
-                "default": "True"
+                "default": "False"
             }
     
 
diff --git a/target/nextflow/agat/agat_convert_embl2gff/.config.vsh.yaml b/target/nextflow/agat/agat_convert_embl2gff/.config.vsh.yaml
index d86f9123..f37cabe9 100644
--- a/target/nextflow/agat/agat_convert_embl2gff/.config.vsh.yaml
+++ b/target/nextflow/agat/agat_convert_embl2gff/.config.vsh.yaml
@@ -225,9 +225,9 @@ build_info:
   output: "target/nextflow/agat/agat_convert_embl2gff"
   executable: "target/nextflow/agat/agat_convert_embl2gff/main.nf"
   viash_version: "0.9.0"
-  git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5"
-  git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-8-g0a0edca"
+  git_commit: "add125261c6fa0ed7c9906fc85e7368d2072c4a3"
+  git_remote: "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-9-gadd1252"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/nextflow/agat/agat_convert_embl2gff/main.nf b/target/nextflow/agat/agat_convert_embl2gff/main.nf
index d52fc4d4..36407741 100644
--- a/target/nextflow/agat/agat_convert_embl2gff/main.nf
+++ b/target/nextflow/agat/agat_convert_embl2gff/main.nf
@@ -3085,9 +3085,9 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/agat/agat_convert_embl2gff",
     "viash_version" : "0.9.0",
-    "git_commit" : "0a0edcacb5368517d249210022363bd9265f1bf5",
-    "git_remote" : "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox",
-    "git_tag" : "v0.2.0-8-g0a0edca"
+    "git_commit" : "add125261c6fa0ed7c9906fc85e7368d2072c4a3",
+    "git_remote" : "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox",
+    "git_tag" : "v0.2.0-9-gadd1252"
   },
   "package_config" : {
     "name" : "biobox",
diff --git a/target/nextflow/agat/agat_convert_genscan2gff/.config.vsh.yaml b/target/nextflow/agat/agat_convert_genscan2gff/.config.vsh.yaml
index a9dea8a5..9911e8f6 100644
--- a/target/nextflow/agat/agat_convert_genscan2gff/.config.vsh.yaml
+++ b/target/nextflow/agat/agat_convert_genscan2gff/.config.vsh.yaml
@@ -230,9 +230,9 @@ build_info:
   output: "target/nextflow/agat/agat_convert_genscan2gff"
   executable: "target/nextflow/agat/agat_convert_genscan2gff/main.nf"
   viash_version: "0.9.0"
-  git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5"
-  git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-8-g0a0edca"
+  git_commit: "add125261c6fa0ed7c9906fc85e7368d2072c4a3"
+  git_remote: "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-9-gadd1252"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/nextflow/agat/agat_convert_genscan2gff/main.nf b/target/nextflow/agat/agat_convert_genscan2gff/main.nf
index 1eb4f320..585a4cf9 100644
--- a/target/nextflow/agat/agat_convert_genscan2gff/main.nf
+++ b/target/nextflow/agat/agat_convert_genscan2gff/main.nf
@@ -3087,9 +3087,9 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/agat/agat_convert_genscan2gff",
     "viash_version" : "0.9.0",
-    "git_commit" : "0a0edcacb5368517d249210022363bd9265f1bf5",
-    "git_remote" : "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox",
-    "git_tag" : "v0.2.0-8-g0a0edca"
+    "git_commit" : "add125261c6fa0ed7c9906fc85e7368d2072c4a3",
+    "git_remote" : "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox",
+    "git_tag" : "v0.2.0-9-gadd1252"
   },
   "package_config" : {
     "name" : "biobox",
diff --git a/target/nextflow/agat/agat_convert_sp_gff2gtf/.config.vsh.yaml b/target/nextflow/agat/agat_convert_sp_gff2gtf/.config.vsh.yaml
index 054fdb05..ff1b8cc7 100644
--- a/target/nextflow/agat/agat_convert_sp_gff2gtf/.config.vsh.yaml
+++ b/target/nextflow/agat/agat_convert_sp_gff2gtf/.config.vsh.yaml
@@ -228,9 +228,9 @@ build_info:
   output: "target/nextflow/agat/agat_convert_sp_gff2gtf"
   executable: "target/nextflow/agat/agat_convert_sp_gff2gtf/main.nf"
   viash_version: "0.9.0"
-  git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5"
-  git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-8-g0a0edca"
+  git_commit: "add125261c6fa0ed7c9906fc85e7368d2072c4a3"
+  git_remote: "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-9-gadd1252"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/nextflow/agat/agat_convert_sp_gff2gtf/main.nf b/target/nextflow/agat/agat_convert_sp_gff2gtf/main.nf
index 885b236d..57e2c2a6 100644
--- a/target/nextflow/agat/agat_convert_sp_gff2gtf/main.nf
+++ b/target/nextflow/agat/agat_convert_sp_gff2gtf/main.nf
@@ -3068,9 +3068,9 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/agat/agat_convert_sp_gff2gtf",
     "viash_version" : "0.9.0",
-    "git_commit" : "0a0edcacb5368517d249210022363bd9265f1bf5",
-    "git_remote" : "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox",
-    "git_tag" : "v0.2.0-8-g0a0edca"
+    "git_commit" : "add125261c6fa0ed7c9906fc85e7368d2072c4a3",
+    "git_remote" : "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox",
+    "git_tag" : "v0.2.0-9-gadd1252"
   },
   "package_config" : {
     "name" : "biobox",
diff --git a/target/nextflow/agat/agat_convert_sp_gff2tsv/.config.vsh.yaml b/target/nextflow/agat/agat_convert_sp_gff2tsv/.config.vsh.yaml
index 9982bc66..3721b4d9 100644
--- a/target/nextflow/agat/agat_convert_sp_gff2tsv/.config.vsh.yaml
+++ b/target/nextflow/agat/agat_convert_sp_gff2tsv/.config.vsh.yaml
@@ -188,9 +188,9 @@ build_info:
   output: "target/nextflow/agat/agat_convert_sp_gff2tsv"
   executable: "target/nextflow/agat/agat_convert_sp_gff2tsv/main.nf"
   viash_version: "0.9.0"
-  git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5"
-  git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-8-g0a0edca"
+  git_commit: "add125261c6fa0ed7c9906fc85e7368d2072c4a3"
+  git_remote: "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-9-gadd1252"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/nextflow/agat/agat_convert_sp_gff2tsv/main.nf b/target/nextflow/agat/agat_convert_sp_gff2tsv/main.nf
index 056f651e..cc828778 100644
--- a/target/nextflow/agat/agat_convert_sp_gff2tsv/main.nf
+++ b/target/nextflow/agat/agat_convert_sp_gff2tsv/main.nf
@@ -3046,9 +3046,9 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/agat/agat_convert_sp_gff2tsv",
     "viash_version" : "0.9.0",
-    "git_commit" : "0a0edcacb5368517d249210022363bd9265f1bf5",
-    "git_remote" : "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox",
-    "git_tag" : "v0.2.0-8-g0a0edca"
+    "git_commit" : "add125261c6fa0ed7c9906fc85e7368d2072c4a3",
+    "git_remote" : "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox",
+    "git_tag" : "v0.2.0-9-gadd1252"
   },
   "package_config" : {
     "name" : "biobox",
diff --git a/target/nextflow/agat/agat_convert_sp_gxf2gxf/.config.vsh.yaml b/target/nextflow/agat/agat_convert_sp_gxf2gxf/.config.vsh.yaml
index 32df2554..19e44d9d 100644
--- a/target/nextflow/agat/agat_convert_sp_gxf2gxf/.config.vsh.yaml
+++ b/target/nextflow/agat/agat_convert_sp_gxf2gxf/.config.vsh.yaml
@@ -195,9 +195,9 @@ build_info:
   output: "target/nextflow/agat/agat_convert_sp_gxf2gxf"
   executable: "target/nextflow/agat/agat_convert_sp_gxf2gxf/main.nf"
   viash_version: "0.9.0"
-  git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5"
-  git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-8-g0a0edca"
+  git_commit: "add125261c6fa0ed7c9906fc85e7368d2072c4a3"
+  git_remote: "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-9-gadd1252"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/nextflow/agat/agat_convert_sp_gxf2gxf/main.nf b/target/nextflow/agat/agat_convert_sp_gxf2gxf/main.nf
index d2bcb010..75232487 100644
--- a/target/nextflow/agat/agat_convert_sp_gxf2gxf/main.nf
+++ b/target/nextflow/agat/agat_convert_sp_gxf2gxf/main.nf
@@ -3046,9 +3046,9 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/agat/agat_convert_sp_gxf2gxf",
     "viash_version" : "0.9.0",
-    "git_commit" : "0a0edcacb5368517d249210022363bd9265f1bf5",
-    "git_remote" : "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox",
-    "git_tag" : "v0.2.0-8-g0a0edca"
+    "git_commit" : "add125261c6fa0ed7c9906fc85e7368d2072c4a3",
+    "git_remote" : "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox",
+    "git_tag" : "v0.2.0-9-gadd1252"
   },
   "package_config" : {
     "name" : "biobox",
diff --git a/target/nextflow/arriba/.config.vsh.yaml b/target/nextflow/arriba/.config.vsh.yaml
index b39c212d..e3a08b94 100644
--- a/target/nextflow/arriba/.config.vsh.yaml
+++ b/target/nextflow/arriba/.config.vsh.yaml
@@ -706,9 +706,9 @@ build_info:
   output: "target/nextflow/arriba"
   executable: "target/nextflow/arriba/main.nf"
   viash_version: "0.9.0"
-  git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5"
-  git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-8-g0a0edca"
+  git_commit: "add125261c6fa0ed7c9906fc85e7368d2072c4a3"
+  git_remote: "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-9-gadd1252"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/nextflow/arriba/main.nf b/target/nextflow/arriba/main.nf
index d2933bde..c7538fd1 100644
--- a/target/nextflow/arriba/main.nf
+++ b/target/nextflow/arriba/main.nf
@@ -3592,9 +3592,9 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/arriba",
     "viash_version" : "0.9.0",
-    "git_commit" : "0a0edcacb5368517d249210022363bd9265f1bf5",
-    "git_remote" : "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox",
-    "git_tag" : "v0.2.0-8-g0a0edca"
+    "git_commit" : "add125261c6fa0ed7c9906fc85e7368d2072c4a3",
+    "git_remote" : "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox",
+    "git_tag" : "v0.2.0-9-gadd1252"
   },
   "package_config" : {
     "name" : "biobox",
diff --git a/target/nextflow/bcftools/bcftools_annotate/.config.vsh.yaml b/target/nextflow/bcftools/bcftools_annotate/.config.vsh.yaml
index 9747fef4..749afaa8 100644
--- a/target/nextflow/bcftools/bcftools_annotate/.config.vsh.yaml
+++ b/target/nextflow/bcftools/bcftools_annotate/.config.vsh.yaml
@@ -469,9 +469,9 @@ build_info:
   output: "target/nextflow/bcftools/bcftools_annotate"
   executable: "target/nextflow/bcftools/bcftools_annotate/main.nf"
   viash_version: "0.9.0"
-  git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5"
-  git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-8-g0a0edca"
+  git_commit: "add125261c6fa0ed7c9906fc85e7368d2072c4a3"
+  git_remote: "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-9-gadd1252"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/nextflow/bcftools/bcftools_annotate/main.nf b/target/nextflow/bcftools/bcftools_annotate/main.nf
index ef0e0a47..2fe18432 100644
--- a/target/nextflow/bcftools/bcftools_annotate/main.nf
+++ b/target/nextflow/bcftools/bcftools_annotate/main.nf
@@ -3335,9 +3335,9 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/bcftools/bcftools_annotate",
     "viash_version" : "0.9.0",
-    "git_commit" : "0a0edcacb5368517d249210022363bd9265f1bf5",
-    "git_remote" : "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox",
-    "git_tag" : "v0.2.0-8-g0a0edca"
+    "git_commit" : "add125261c6fa0ed7c9906fc85e7368d2072c4a3",
+    "git_remote" : "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox",
+    "git_tag" : "v0.2.0-9-gadd1252"
   },
   "package_config" : {
     "name" : "biobox",
diff --git a/target/nextflow/bcftools/bcftools_concat/.config.vsh.yaml b/target/nextflow/bcftools/bcftools_concat/.config.vsh.yaml
index 02b1393e..43d6f870 100644
--- a/target/nextflow/bcftools/bcftools_concat/.config.vsh.yaml
+++ b/target/nextflow/bcftools/bcftools_concat/.config.vsh.yaml
@@ -335,9 +335,9 @@ build_info:
   output: "target/nextflow/bcftools/bcftools_concat"
   executable: "target/nextflow/bcftools/bcftools_concat/main.nf"
   viash_version: "0.9.0"
-  git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5"
-  git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-8-g0a0edca"
+  git_commit: "add125261c6fa0ed7c9906fc85e7368d2072c4a3"
+  git_remote: "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-9-gadd1252"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/nextflow/bcftools/bcftools_concat/main.nf b/target/nextflow/bcftools/bcftools_concat/main.nf
index de45f07c..2c59142b 100644
--- a/target/nextflow/bcftools/bcftools_concat/main.nf
+++ b/target/nextflow/bcftools/bcftools_concat/main.nf
@@ -3207,9 +3207,9 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/bcftools/bcftools_concat",
     "viash_version" : "0.9.0",
-    "git_commit" : "0a0edcacb5368517d249210022363bd9265f1bf5",
-    "git_remote" : "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox",
-    "git_tag" : "v0.2.0-8-g0a0edca"
+    "git_commit" : "add125261c6fa0ed7c9906fc85e7368d2072c4a3",
+    "git_remote" : "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox",
+    "git_tag" : "v0.2.0-9-gadd1252"
   },
   "package_config" : {
     "name" : "biobox",
diff --git a/target/nextflow/bcftools/bcftools_norm/.config.vsh.yaml b/target/nextflow/bcftools/bcftools_norm/.config.vsh.yaml
index a21a4ce5..718817b0 100644
--- a/target/nextflow/bcftools/bcftools_norm/.config.vsh.yaml
+++ b/target/nextflow/bcftools/bcftools_norm/.config.vsh.yaml
@@ -416,9 +416,9 @@ build_info:
   output: "target/nextflow/bcftools/bcftools_norm"
   executable: "target/nextflow/bcftools/bcftools_norm/main.nf"
   viash_version: "0.9.0"
-  git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5"
-  git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-8-g0a0edca"
+  git_commit: "add125261c6fa0ed7c9906fc85e7368d2072c4a3"
+  git_remote: "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-9-gadd1252"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/nextflow/bcftools/bcftools_norm/main.nf b/target/nextflow/bcftools/bcftools_norm/main.nf
index d2920bb7..3e89c7f9 100644
--- a/target/nextflow/bcftools/bcftools_norm/main.nf
+++ b/target/nextflow/bcftools/bcftools_norm/main.nf
@@ -3300,9 +3300,9 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/bcftools/bcftools_norm",
     "viash_version" : "0.9.0",
-    "git_commit" : "0a0edcacb5368517d249210022363bd9265f1bf5",
-    "git_remote" : "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox",
-    "git_tag" : "v0.2.0-8-g0a0edca"
+    "git_commit" : "add125261c6fa0ed7c9906fc85e7368d2072c4a3",
+    "git_remote" : "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox",
+    "git_tag" : "v0.2.0-9-gadd1252"
   },
   "package_config" : {
     "name" : "biobox",
diff --git a/target/nextflow/bcftools/bcftools_sort/.config.vsh.yaml b/target/nextflow/bcftools/bcftools_sort/.config.vsh.yaml
index c5587329..c8301102 100644
--- a/target/nextflow/bcftools/bcftools_sort/.config.vsh.yaml
+++ b/target/nextflow/bcftools/bcftools_sort/.config.vsh.yaml
@@ -185,9 +185,9 @@ build_info:
   output: "target/nextflow/bcftools/bcftools_sort"
   executable: "target/nextflow/bcftools/bcftools_sort/main.nf"
   viash_version: "0.9.0"
-  git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5"
-  git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-8-g0a0edca"
+  git_commit: "add125261c6fa0ed7c9906fc85e7368d2072c4a3"
+  git_remote: "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-9-gadd1252"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/nextflow/bcftools/bcftools_sort/main.nf b/target/nextflow/bcftools/bcftools_sort/main.nf
index d0160b9b..2e0bb7c0 100644
--- a/target/nextflow/bcftools/bcftools_sort/main.nf
+++ b/target/nextflow/bcftools/bcftools_sort/main.nf
@@ -3048,9 +3048,9 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/bcftools/bcftools_sort",
     "viash_version" : "0.9.0",
-    "git_commit" : "0a0edcacb5368517d249210022363bd9265f1bf5",
-    "git_remote" : "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox",
-    "git_tag" : "v0.2.0-8-g0a0edca"
+    "git_commit" : "add125261c6fa0ed7c9906fc85e7368d2072c4a3",
+    "git_remote" : "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox",
+    "git_tag" : "v0.2.0-9-gadd1252"
   },
   "package_config" : {
     "name" : "biobox",
diff --git a/target/nextflow/bcftools/bcftools_stats/.config.vsh.yaml b/target/nextflow/bcftools/bcftools_stats/.config.vsh.yaml
index 3f120caf..51369ee7 100644
--- a/target/nextflow/bcftools/bcftools_stats/.config.vsh.yaml
+++ b/target/nextflow/bcftools/bcftools_stats/.config.vsh.yaml
@@ -458,9 +458,9 @@ build_info:
   output: "target/nextflow/bcftools/bcftools_stats"
   executable: "target/nextflow/bcftools/bcftools_stats/main.nf"
   viash_version: "0.9.0"
-  git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5"
-  git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-8-g0a0edca"
+  git_commit: "add125261c6fa0ed7c9906fc85e7368d2072c4a3"
+  git_remote: "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-9-gadd1252"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/nextflow/bcftools/bcftools_stats/main.nf b/target/nextflow/bcftools/bcftools_stats/main.nf
index 3e9b1ceb..159d4739 100644
--- a/target/nextflow/bcftools/bcftools_stats/main.nf
+++ b/target/nextflow/bcftools/bcftools_stats/main.nf
@@ -3337,9 +3337,9 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/bcftools/bcftools_stats",
     "viash_version" : "0.9.0",
-    "git_commit" : "0a0edcacb5368517d249210022363bd9265f1bf5",
-    "git_remote" : "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox",
-    "git_tag" : "v0.2.0-8-g0a0edca"
+    "git_commit" : "add125261c6fa0ed7c9906fc85e7368d2072c4a3",
+    "git_remote" : "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox",
+    "git_tag" : "v0.2.0-9-gadd1252"
   },
   "package_config" : {
     "name" : "biobox",
diff --git a/target/nextflow/bcl_convert/.config.vsh.yaml b/target/nextflow/bcl_convert/.config.vsh.yaml
index 94a85113..236bc69f 100644
--- a/target/nextflow/bcl_convert/.config.vsh.yaml
+++ b/target/nextflow/bcl_convert/.config.vsh.yaml
@@ -418,9 +418,9 @@ build_info:
   output: "target/nextflow/bcl_convert"
   executable: "target/nextflow/bcl_convert/main.nf"
   viash_version: "0.9.0"
-  git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5"
-  git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-8-g0a0edca"
+  git_commit: "add125261c6fa0ed7c9906fc85e7368d2072c4a3"
+  git_remote: "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-9-gadd1252"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/nextflow/bcl_convert/main.nf b/target/nextflow/bcl_convert/main.nf
index 1a88488b..2f52fa88 100644
--- a/target/nextflow/bcl_convert/main.nf
+++ b/target/nextflow/bcl_convert/main.nf
@@ -3329,9 +3329,9 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/bcl_convert",
     "viash_version" : "0.9.0",
-    "git_commit" : "0a0edcacb5368517d249210022363bd9265f1bf5",
-    "git_remote" : "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox",
-    "git_tag" : "v0.2.0-8-g0a0edca"
+    "git_commit" : "add125261c6fa0ed7c9906fc85e7368d2072c4a3",
+    "git_remote" : "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox",
+    "git_tag" : "v0.2.0-9-gadd1252"
   },
   "package_config" : {
     "name" : "biobox",
diff --git a/target/nextflow/bd_rhapsody/bd_rhapsody_make_reference/.config.vsh.yaml b/target/nextflow/bd_rhapsody/bd_rhapsody_make_reference/.config.vsh.yaml
index 1770255a..ce8677f3 100644
--- a/target/nextflow/bd_rhapsody/bd_rhapsody_make_reference/.config.vsh.yaml
+++ b/target/nextflow/bd_rhapsody/bd_rhapsody_make_reference/.config.vsh.yaml
@@ -274,9 +274,9 @@ build_info:
   output: "target/nextflow/bd_rhapsody/bd_rhapsody_make_reference"
   executable: "target/nextflow/bd_rhapsody/bd_rhapsody_make_reference/main.nf"
   viash_version: "0.9.0"
-  git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5"
-  git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-8-g0a0edca"
+  git_commit: "add125261c6fa0ed7c9906fc85e7368d2072c4a3"
+  git_remote: "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-9-gadd1252"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/nextflow/bd_rhapsody/bd_rhapsody_make_reference/main.nf b/target/nextflow/bd_rhapsody/bd_rhapsody_make_reference/main.nf
index 2b816239..8c3e098e 100644
--- a/target/nextflow/bd_rhapsody/bd_rhapsody_make_reference/main.nf
+++ b/target/nextflow/bd_rhapsody/bd_rhapsody_make_reference/main.nf
@@ -3146,9 +3146,9 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/bd_rhapsody/bd_rhapsody_make_reference",
     "viash_version" : "0.9.0",
-    "git_commit" : "0a0edcacb5368517d249210022363bd9265f1bf5",
-    "git_remote" : "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox",
-    "git_tag" : "v0.2.0-8-g0a0edca"
+    "git_commit" : "add125261c6fa0ed7c9906fc85e7368d2072c4a3",
+    "git_remote" : "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox",
+    "git_tag" : "v0.2.0-9-gadd1252"
   },
   "package_config" : {
     "name" : "biobox",
diff --git a/target/nextflow/bd_rhapsody/bd_rhapsody_sequence_analysis/.config.vsh.yaml b/target/nextflow/bd_rhapsody/bd_rhapsody_sequence_analysis/.config.vsh.yaml
index 08578d00..4dc87c55 100644
--- a/target/nextflow/bd_rhapsody/bd_rhapsody_sequence_analysis/.config.vsh.yaml
+++ b/target/nextflow/bd_rhapsody/bd_rhapsody_sequence_analysis/.config.vsh.yaml
@@ -1115,9 +1115,9 @@ build_info:
   output: "target/nextflow/bd_rhapsody/bd_rhapsody_sequence_analysis"
   executable: "target/nextflow/bd_rhapsody/bd_rhapsody_sequence_analysis/main.nf"
   viash_version: "0.9.0"
-  git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5"
-  git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-8-g0a0edca"
+  git_commit: "add125261c6fa0ed7c9906fc85e7368d2072c4a3"
+  git_remote: "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-9-gadd1252"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/nextflow/bd_rhapsody/bd_rhapsody_sequence_analysis/main.nf b/target/nextflow/bd_rhapsody/bd_rhapsody_sequence_analysis/main.nf
index 5d3d8216..ab79f895 100644
--- a/target/nextflow/bd_rhapsody/bd_rhapsody_sequence_analysis/main.nf
+++ b/target/nextflow/bd_rhapsody/bd_rhapsody_sequence_analysis/main.nf
@@ -4193,9 +4193,9 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/bd_rhapsody/bd_rhapsody_sequence_analysis",
     "viash_version" : "0.9.0",
-    "git_commit" : "0a0edcacb5368517d249210022363bd9265f1bf5",
-    "git_remote" : "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox",
-    "git_tag" : "v0.2.0-8-g0a0edca"
+    "git_commit" : "add125261c6fa0ed7c9906fc85e7368d2072c4a3",
+    "git_remote" : "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox",
+    "git_tag" : "v0.2.0-9-gadd1252"
   },
   "package_config" : {
     "name" : "biobox",
diff --git a/target/nextflow/bedtools/bedtools_bamtofastq/.config.vsh.yaml b/target/nextflow/bedtools/bedtools_bamtofastq/.config.vsh.yaml
index bdf91f97..2cf1c33e 100644
--- a/target/nextflow/bedtools/bedtools_bamtofastq/.config.vsh.yaml
+++ b/target/nextflow/bedtools/bedtools_bamtofastq/.config.vsh.yaml
@@ -187,9 +187,9 @@ build_info:
   output: "target/nextflow/bedtools/bedtools_bamtofastq"
   executable: "target/nextflow/bedtools/bedtools_bamtofastq/main.nf"
   viash_version: "0.9.0"
-  git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5"
-  git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-8-g0a0edca"
+  git_commit: "add125261c6fa0ed7c9906fc85e7368d2072c4a3"
+  git_remote: "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-9-gadd1252"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/nextflow/bedtools/bedtools_bamtofastq/main.nf b/target/nextflow/bedtools/bedtools_bamtofastq/main.nf
index cfa64852..3f523463 100644
--- a/target/nextflow/bedtools/bedtools_bamtofastq/main.nf
+++ b/target/nextflow/bedtools/bedtools_bamtofastq/main.nf
@@ -3050,9 +3050,9 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/bedtools/bedtools_bamtofastq",
     "viash_version" : "0.9.0",
-    "git_commit" : "0a0edcacb5368517d249210022363bd9265f1bf5",
-    "git_remote" : "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox",
-    "git_tag" : "v0.2.0-8-g0a0edca"
+    "git_commit" : "add125261c6fa0ed7c9906fc85e7368d2072c4a3",
+    "git_remote" : "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox",
+    "git_tag" : "v0.2.0-9-gadd1252"
   },
   "package_config" : {
     "name" : "biobox",
diff --git a/target/nextflow/bedtools/bedtools_bed12tobed6/.config.vsh.yaml b/target/nextflow/bedtools/bedtools_bed12tobed6/.config.vsh.yaml
index 4c891f1a..b70262e7 100644
--- a/target/nextflow/bedtools/bedtools_bed12tobed6/.config.vsh.yaml
+++ b/target/nextflow/bedtools/bedtools_bed12tobed6/.config.vsh.yaml
@@ -176,9 +176,9 @@ build_info:
   output: "target/nextflow/bedtools/bedtools_bed12tobed6"
   executable: "target/nextflow/bedtools/bedtools_bed12tobed6/main.nf"
   viash_version: "0.9.0"
-  git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5"
-  git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-8-g0a0edca"
+  git_commit: "add125261c6fa0ed7c9906fc85e7368d2072c4a3"
+  git_remote: "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-9-gadd1252"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/nextflow/bedtools/bedtools_bed12tobed6/main.nf b/target/nextflow/bedtools/bedtools_bed12tobed6/main.nf
index ca22a762..58b2c59d 100644
--- a/target/nextflow/bedtools/bedtools_bed12tobed6/main.nf
+++ b/target/nextflow/bedtools/bedtools_bed12tobed6/main.nf
@@ -3035,9 +3035,9 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/bedtools/bedtools_bed12tobed6",
     "viash_version" : "0.9.0",
-    "git_commit" : "0a0edcacb5368517d249210022363bd9265f1bf5",
-    "git_remote" : "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox",
-    "git_tag" : "v0.2.0-8-g0a0edca"
+    "git_commit" : "add125261c6fa0ed7c9906fc85e7368d2072c4a3",
+    "git_remote" : "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox",
+    "git_tag" : "v0.2.0-9-gadd1252"
   },
   "package_config" : {
     "name" : "biobox",
diff --git a/target/nextflow/bedtools/bedtools_bedtobam/.config.vsh.yaml b/target/nextflow/bedtools/bedtools_bedtobam/.config.vsh.yaml
index 9e3c82e0..95715359 100644
--- a/target/nextflow/bedtools/bedtools_bedtobam/.config.vsh.yaml
+++ b/target/nextflow/bedtools/bedtools_bedtobam/.config.vsh.yaml
@@ -214,9 +214,9 @@ build_info:
   output: "target/nextflow/bedtools/bedtools_bedtobam"
   executable: "target/nextflow/bedtools/bedtools_bedtobam/main.nf"
   viash_version: "0.9.0"
-  git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5"
-  git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-8-g0a0edca"
+  git_commit: "add125261c6fa0ed7c9906fc85e7368d2072c4a3"
+  git_remote: "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-9-gadd1252"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/nextflow/bedtools/bedtools_bedtobam/main.nf b/target/nextflow/bedtools/bedtools_bedtobam/main.nf
index 99eadac7..99793649 100644
--- a/target/nextflow/bedtools/bedtools_bedtobam/main.nf
+++ b/target/nextflow/bedtools/bedtools_bedtobam/main.nf
@@ -3083,9 +3083,9 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/bedtools/bedtools_bedtobam",
     "viash_version" : "0.9.0",
-    "git_commit" : "0a0edcacb5368517d249210022363bd9265f1bf5",
-    "git_remote" : "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox",
-    "git_tag" : "v0.2.0-8-g0a0edca"
+    "git_commit" : "add125261c6fa0ed7c9906fc85e7368d2072c4a3",
+    "git_remote" : "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox",
+    "git_tag" : "v0.2.0-9-gadd1252"
   },
   "package_config" : {
     "name" : "biobox",
diff --git a/target/nextflow/bedtools/bedtools_genomecov/.config.vsh.yaml b/target/nextflow/bedtools/bedtools_genomecov/.config.vsh.yaml
index 1dfc54ad..9ac9bd32 100644
--- a/target/nextflow/bedtools/bedtools_genomecov/.config.vsh.yaml
+++ b/target/nextflow/bedtools/bedtools_genomecov/.config.vsh.yaml
@@ -337,9 +337,9 @@ build_info:
   output: "target/nextflow/bedtools/bedtools_genomecov"
   executable: "target/nextflow/bedtools/bedtools_genomecov/main.nf"
   viash_version: "0.9.0"
-  git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5"
-  git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-8-g0a0edca"
+  git_commit: "add125261c6fa0ed7c9906fc85e7368d2072c4a3"
+  git_remote: "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-9-gadd1252"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/nextflow/bedtools/bedtools_genomecov/main.nf b/target/nextflow/bedtools/bedtools_genomecov/main.nf
index cca2ac6e..2793607d 100644
--- a/target/nextflow/bedtools/bedtools_genomecov/main.nf
+++ b/target/nextflow/bedtools/bedtools_genomecov/main.nf
@@ -3207,9 +3207,9 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/bedtools/bedtools_genomecov",
     "viash_version" : "0.9.0",
-    "git_commit" : "0a0edcacb5368517d249210022363bd9265f1bf5",
-    "git_remote" : "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox",
-    "git_tag" : "v0.2.0-8-g0a0edca"
+    "git_commit" : "add125261c6fa0ed7c9906fc85e7368d2072c4a3",
+    "git_remote" : "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox",
+    "git_tag" : "v0.2.0-9-gadd1252"
   },
   "package_config" : {
     "name" : "biobox",
diff --git a/target/nextflow/bedtools/bedtools_getfasta/.config.vsh.yaml b/target/nextflow/bedtools/bedtools_getfasta/.config.vsh.yaml
index 59c52d96..c88ec67b 100644
--- a/target/nextflow/bedtools/bedtools_getfasta/.config.vsh.yaml
+++ b/target/nextflow/bedtools/bedtools_getfasta/.config.vsh.yaml
@@ -232,9 +232,9 @@ build_info:
   output: "target/nextflow/bedtools/bedtools_getfasta"
   executable: "target/nextflow/bedtools/bedtools_getfasta/main.nf"
   viash_version: "0.9.0"
-  git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5"
-  git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-8-g0a0edca"
+  git_commit: "add125261c6fa0ed7c9906fc85e7368d2072c4a3"
+  git_remote: "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-9-gadd1252"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/nextflow/bedtools/bedtools_getfasta/main.nf b/target/nextflow/bedtools/bedtools_getfasta/main.nf
index 3ccf04db..fee09e76 100644
--- a/target/nextflow/bedtools/bedtools_getfasta/main.nf
+++ b/target/nextflow/bedtools/bedtools_getfasta/main.nf
@@ -3086,9 +3086,9 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/bedtools/bedtools_getfasta",
     "viash_version" : "0.9.0",
-    "git_commit" : "0a0edcacb5368517d249210022363bd9265f1bf5",
-    "git_remote" : "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox",
-    "git_tag" : "v0.2.0-8-g0a0edca"
+    "git_commit" : "add125261c6fa0ed7c9906fc85e7368d2072c4a3",
+    "git_remote" : "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox",
+    "git_tag" : "v0.2.0-9-gadd1252"
   },
   "package_config" : {
     "name" : "biobox",
diff --git a/target/nextflow/bedtools/bedtools_groupby/.config.vsh.yaml b/target/nextflow/bedtools/bedtools_groupby/.config.vsh.yaml
index dbe2d26e..bf426f45 100644
--- a/target/nextflow/bedtools/bedtools_groupby/.config.vsh.yaml
+++ b/target/nextflow/bedtools/bedtools_groupby/.config.vsh.yaml
@@ -273,9 +273,9 @@ build_info:
   output: "target/nextflow/bedtools/bedtools_groupby"
   executable: "target/nextflow/bedtools/bedtools_groupby/main.nf"
   viash_version: "0.9.0"
-  git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5"
-  git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-8-g0a0edca"
+  git_commit: "add125261c6fa0ed7c9906fc85e7368d2072c4a3"
+  git_remote: "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-9-gadd1252"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/nextflow/bedtools/bedtools_groupby/main.nf b/target/nextflow/bedtools/bedtools_groupby/main.nf
index 2f56e8e8..392facbd 100644
--- a/target/nextflow/bedtools/bedtools_groupby/main.nf
+++ b/target/nextflow/bedtools/bedtools_groupby/main.nf
@@ -3130,9 +3130,9 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/bedtools/bedtools_groupby",
     "viash_version" : "0.9.0",
-    "git_commit" : "0a0edcacb5368517d249210022363bd9265f1bf5",
-    "git_remote" : "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox",
-    "git_tag" : "v0.2.0-8-g0a0edca"
+    "git_commit" : "add125261c6fa0ed7c9906fc85e7368d2072c4a3",
+    "git_remote" : "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox",
+    "git_tag" : "v0.2.0-9-gadd1252"
   },
   "package_config" : {
     "name" : "biobox",
diff --git a/target/nextflow/bedtools/bedtools_intersect/.config.vsh.yaml b/target/nextflow/bedtools/bedtools_intersect/.config.vsh.yaml
index 5fd74558..fc062f82 100644
--- a/target/nextflow/bedtools/bedtools_intersect/.config.vsh.yaml
+++ b/target/nextflow/bedtools/bedtools_intersect/.config.vsh.yaml
@@ -410,9 +410,9 @@ build_info:
   output: "target/nextflow/bedtools/bedtools_intersect"
   executable: "target/nextflow/bedtools/bedtools_intersect/main.nf"
   viash_version: "0.9.0"
-  git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5"
-  git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-8-g0a0edca"
+  git_commit: "add125261c6fa0ed7c9906fc85e7368d2072c4a3"
+  git_remote: "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-9-gadd1252"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/nextflow/bedtools/bedtools_intersect/main.nf b/target/nextflow/bedtools/bedtools_intersect/main.nf
index bc0b4f57..4b971b25 100644
--- a/target/nextflow/bedtools/bedtools_intersect/main.nf
+++ b/target/nextflow/bedtools/bedtools_intersect/main.nf
@@ -3282,9 +3282,9 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/bedtools/bedtools_intersect",
     "viash_version" : "0.9.0",
-    "git_commit" : "0a0edcacb5368517d249210022363bd9265f1bf5",
-    "git_remote" : "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox",
-    "git_tag" : "v0.2.0-8-g0a0edca"
+    "git_commit" : "add125261c6fa0ed7c9906fc85e7368d2072c4a3",
+    "git_remote" : "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox",
+    "git_tag" : "v0.2.0-9-gadd1252"
   },
   "package_config" : {
     "name" : "biobox",
diff --git a/target/nextflow/bedtools/bedtools_links/.config.vsh.yaml b/target/nextflow/bedtools/bedtools_links/.config.vsh.yaml
index 57b4bfa9..5ee6591d 100644
--- a/target/nextflow/bedtools/bedtools_links/.config.vsh.yaml
+++ b/target/nextflow/bedtools/bedtools_links/.config.vsh.yaml
@@ -210,9 +210,9 @@ build_info:
   output: "target/nextflow/bedtools/bedtools_links"
   executable: "target/nextflow/bedtools/bedtools_links/main.nf"
   viash_version: "0.9.0"
-  git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5"
-  git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-8-g0a0edca"
+  git_commit: "add125261c6fa0ed7c9906fc85e7368d2072c4a3"
+  git_remote: "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-9-gadd1252"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/nextflow/bedtools/bedtools_links/main.nf b/target/nextflow/bedtools/bedtools_links/main.nf
index 4ebf69db..cad9b43b 100644
--- a/target/nextflow/bedtools/bedtools_links/main.nf
+++ b/target/nextflow/bedtools/bedtools_links/main.nf
@@ -3073,9 +3073,9 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/bedtools/bedtools_links",
     "viash_version" : "0.9.0",
-    "git_commit" : "0a0edcacb5368517d249210022363bd9265f1bf5",
-    "git_remote" : "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox",
-    "git_tag" : "v0.2.0-8-g0a0edca"
+    "git_commit" : "add125261c6fa0ed7c9906fc85e7368d2072c4a3",
+    "git_remote" : "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox",
+    "git_tag" : "v0.2.0-9-gadd1252"
   },
   "package_config" : {
     "name" : "biobox",
diff --git a/target/nextflow/bedtools/bedtools_merge/.config.vsh.yaml b/target/nextflow/bedtools/bedtools_merge/.config.vsh.yaml
index e11b2a99..8d0842a2 100644
--- a/target/nextflow/bedtools/bedtools_merge/.config.vsh.yaml
+++ b/target/nextflow/bedtools/bedtools_merge/.config.vsh.yaml
@@ -279,9 +279,9 @@ build_info:
   output: "target/nextflow/bedtools/bedtools_merge"
   executable: "target/nextflow/bedtools/bedtools_merge/main.nf"
   viash_version: "0.9.0"
-  git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5"
-  git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-8-g0a0edca"
+  git_commit: "add125261c6fa0ed7c9906fc85e7368d2072c4a3"
+  git_remote: "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-9-gadd1252"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/nextflow/bedtools/bedtools_merge/main.nf b/target/nextflow/bedtools/bedtools_merge/main.nf
index a109378a..dbb62914 100644
--- a/target/nextflow/bedtools/bedtools_merge/main.nf
+++ b/target/nextflow/bedtools/bedtools_merge/main.nf
@@ -3134,9 +3134,9 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/bedtools/bedtools_merge",
     "viash_version" : "0.9.0",
-    "git_commit" : "0a0edcacb5368517d249210022363bd9265f1bf5",
-    "git_remote" : "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox",
-    "git_tag" : "v0.2.0-8-g0a0edca"
+    "git_commit" : "add125261c6fa0ed7c9906fc85e7368d2072c4a3",
+    "git_remote" : "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox",
+    "git_tag" : "v0.2.0-9-gadd1252"
   },
   "package_config" : {
     "name" : "biobox",
diff --git a/target/nextflow/bedtools/bedtools_sort/.config.vsh.yaml b/target/nextflow/bedtools/bedtools_sort/.config.vsh.yaml
index b0d4457a..9bef6637 100644
--- a/target/nextflow/bedtools/bedtools_sort/.config.vsh.yaml
+++ b/target/nextflow/bedtools/bedtools_sort/.config.vsh.yaml
@@ -222,9 +222,9 @@ build_info:
   output: "target/nextflow/bedtools/bedtools_sort"
   executable: "target/nextflow/bedtools/bedtools_sort/main.nf"
   viash_version: "0.9.0"
-  git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5"
-  git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-8-g0a0edca"
+  git_commit: "add125261c6fa0ed7c9906fc85e7368d2072c4a3"
+  git_remote: "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-9-gadd1252"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/nextflow/bedtools/bedtools_sort/main.nf b/target/nextflow/bedtools/bedtools_sort/main.nf
index 4ccaaa33..26dd26b5 100644
--- a/target/nextflow/bedtools/bedtools_sort/main.nf
+++ b/target/nextflow/bedtools/bedtools_sort/main.nf
@@ -3092,9 +3092,9 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/bedtools/bedtools_sort",
     "viash_version" : "0.9.0",
-    "git_commit" : "0a0edcacb5368517d249210022363bd9265f1bf5",
-    "git_remote" : "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox",
-    "git_tag" : "v0.2.0-8-g0a0edca"
+    "git_commit" : "add125261c6fa0ed7c9906fc85e7368d2072c4a3",
+    "git_remote" : "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox",
+    "git_tag" : "v0.2.0-9-gadd1252"
   },
   "package_config" : {
     "name" : "biobox",
diff --git a/target/nextflow/busco/busco_download_datasets/.config.vsh.yaml b/target/nextflow/busco/busco_download_datasets/.config.vsh.yaml
index 7cae6789..e2f291eb 100644
--- a/target/nextflow/busco/busco_download_datasets/.config.vsh.yaml
+++ b/target/nextflow/busco/busco_download_datasets/.config.vsh.yaml
@@ -158,9 +158,9 @@ build_info:
   output: "target/nextflow/busco/busco_download_datasets"
   executable: "target/nextflow/busco/busco_download_datasets/main.nf"
   viash_version: "0.9.0"
-  git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5"
-  git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-8-g0a0edca"
+  git_commit: "add125261c6fa0ed7c9906fc85e7368d2072c4a3"
+  git_remote: "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-9-gadd1252"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/nextflow/busco/busco_download_datasets/main.nf b/target/nextflow/busco/busco_download_datasets/main.nf
index 61a26ecf..0802def3 100644
--- a/target/nextflow/busco/busco_download_datasets/main.nf
+++ b/target/nextflow/busco/busco_download_datasets/main.nf
@@ -3011,9 +3011,9 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/busco/busco_download_datasets",
     "viash_version" : "0.9.0",
-    "git_commit" : "0a0edcacb5368517d249210022363bd9265f1bf5",
-    "git_remote" : "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox",
-    "git_tag" : "v0.2.0-8-g0a0edca"
+    "git_commit" : "add125261c6fa0ed7c9906fc85e7368d2072c4a3",
+    "git_remote" : "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox",
+    "git_tag" : "v0.2.0-9-gadd1252"
   },
   "package_config" : {
     "name" : "biobox",
diff --git a/target/nextflow/busco/busco_list_datasets/.config.vsh.yaml b/target/nextflow/busco/busco_list_datasets/.config.vsh.yaml
index 641c25d4..ef5e1762 100644
--- a/target/nextflow/busco/busco_list_datasets/.config.vsh.yaml
+++ b/target/nextflow/busco/busco_list_datasets/.config.vsh.yaml
@@ -145,9 +145,9 @@ build_info:
   output: "target/nextflow/busco/busco_list_datasets"
   executable: "target/nextflow/busco/busco_list_datasets/main.nf"
   viash_version: "0.9.0"
-  git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5"
-  git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-8-g0a0edca"
+  git_commit: "add125261c6fa0ed7c9906fc85e7368d2072c4a3"
+  git_remote: "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-9-gadd1252"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/nextflow/busco/busco_list_datasets/main.nf b/target/nextflow/busco/busco_list_datasets/main.nf
index 85ed832a..da587152 100644
--- a/target/nextflow/busco/busco_list_datasets/main.nf
+++ b/target/nextflow/busco/busco_list_datasets/main.nf
@@ -2997,9 +2997,9 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/busco/busco_list_datasets",
     "viash_version" : "0.9.0",
-    "git_commit" : "0a0edcacb5368517d249210022363bd9265f1bf5",
-    "git_remote" : "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox",
-    "git_tag" : "v0.2.0-8-g0a0edca"
+    "git_commit" : "add125261c6fa0ed7c9906fc85e7368d2072c4a3",
+    "git_remote" : "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox",
+    "git_tag" : "v0.2.0-9-gadd1252"
   },
   "package_config" : {
     "name" : "biobox",
diff --git a/target/nextflow/busco/busco_run/.config.vsh.yaml b/target/nextflow/busco/busco_run/.config.vsh.yaml
index f38dbc8c..a403970b 100644
--- a/target/nextflow/busco/busco_run/.config.vsh.yaml
+++ b/target/nextflow/busco/busco_run/.config.vsh.yaml
@@ -423,9 +423,9 @@ build_info:
   output: "target/nextflow/busco/busco_run"
   executable: "target/nextflow/busco/busco_run/main.nf"
   viash_version: "0.9.0"
-  git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5"
-  git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-8-g0a0edca"
+  git_commit: "add125261c6fa0ed7c9906fc85e7368d2072c4a3"
+  git_remote: "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-9-gadd1252"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/nextflow/busco/busco_run/main.nf b/target/nextflow/busco/busco_run/main.nf
index 4848c102..de5910f7 100644
--- a/target/nextflow/busco/busco_run/main.nf
+++ b/target/nextflow/busco/busco_run/main.nf
@@ -3309,9 +3309,9 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/busco/busco_run",
     "viash_version" : "0.9.0",
-    "git_commit" : "0a0edcacb5368517d249210022363bd9265f1bf5",
-    "git_remote" : "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox",
-    "git_tag" : "v0.2.0-8-g0a0edca"
+    "git_commit" : "add125261c6fa0ed7c9906fc85e7368d2072c4a3",
+    "git_remote" : "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox",
+    "git_tag" : "v0.2.0-9-gadd1252"
   },
   "package_config" : {
     "name" : "biobox",
diff --git a/target/nextflow/cutadapt/.config.vsh.yaml b/target/nextflow/cutadapt/.config.vsh.yaml
index d2d9899e..73a1715b 100644
--- a/target/nextflow/cutadapt/.config.vsh.yaml
+++ b/target/nextflow/cutadapt/.config.vsh.yaml
@@ -251,7 +251,7 @@ argument_groups:
     direction: "input"
     multiple: false
     multiple_sep: ";"
-  - type: "boolean_false"
+  - type: "boolean_true"
     name: "--no_indels"
     description: "Allow only mismatches in alignments.\n"
     info: null
@@ -286,7 +286,7 @@ argument_groups:
     description: "Interpret IUPAC wildcards in reads.\n"
     info: null
     direction: "input"
-  - type: "boolean_false"
+  - type: "boolean_true"
     name: "--no_match_adapter_wildcards"
     description: "Do not interpret IUPAC wildcards in adapters.\n"
     info: null
@@ -740,9 +740,9 @@ build_info:
   output: "target/nextflow/cutadapt"
   executable: "target/nextflow/cutadapt/main.nf"
   viash_version: "0.9.0"
-  git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5"
-  git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-8-g0a0edca"
+  git_commit: "add125261c6fa0ed7c9906fc85e7368d2072c4a3"
+  git_remote: "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-9-gadd1252"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/nextflow/cutadapt/main.nf b/target/nextflow/cutadapt/main.nf
index c191b7a6..3ede1273 100644
--- a/target/nextflow/cutadapt/main.nf
+++ b/target/nextflow/cutadapt/main.nf
@@ -3063,7 +3063,7 @@ meta = [
           "multiple_sep" : ";"
         },
         {
-          "type" : "boolean_false",
+          "type" : "boolean_true",
           "name" : "--no_indels",
           "description" : "Allow only mismatches in alignments.\n",
           "direction" : "input"
@@ -3105,7 +3105,7 @@ meta = [
           "direction" : "input"
         },
         {
-          "type" : "boolean_false",
+          "type" : "boolean_true",
           "name" : "--no_match_adapter_wildcards",
           "description" : "Do not interpret IUPAC wildcards in adapters.\n",
           "direction" : "input"
@@ -3619,9 +3619,9 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/cutadapt",
     "viash_version" : "0.9.0",
-    "git_commit" : "0a0edcacb5368517d249210022363bd9265f1bf5",
-    "git_remote" : "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox",
-    "git_tag" : "v0.2.0-8-g0a0edca"
+    "git_commit" : "add125261c6fa0ed7c9906fc85e7368d2072c4a3",
+    "git_remote" : "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox",
+    "git_tag" : "v0.2.0-9-gadd1252"
   },
   "package_config" : {
     "name" : "biobox",
@@ -3826,9 +3826,9 @@ debug
 # Input arguments 
 ###########################################################
 echo ">> Parsing input arguments"
-[[ "\\$par_no_indels" == "true" ]] && unset par_no_indels
+[[ "\\$par_no_indels" == "false" ]] && unset par_no_indels
 [[ "\\$par_match_read_wildcards" == "false" ]] && unset par_match_read_wildcards
-[[ "\\$par_no_match_adapter_wildcards" == "true" ]] && unset par_no_match_adapter_wildcards
+[[ "\\$par_no_match_adapter_wildcards" == "false" ]] && unset par_no_match_adapter_wildcards
 [[ "\\$par_revcomp" == "false" ]] && unset par_revcomp
 
 input_args=\\$(echo \\\\
diff --git a/target/nextflow/cutadapt/nextflow_schema.json b/target/nextflow/cutadapt/nextflow_schema.json
index 20301884..09c66f90 100644
--- a/target/nextflow/cutadapt/nextflow_schema.json
+++ b/target/nextflow/cutadapt/nextflow_schema.json
@@ -251,10 +251,10 @@
                 "no_indels": {
                 "type":
                 "boolean",
-                "description": "Type: `boolean_false`, default: `true`. Allow only mismatches in alignments",
-                "help_text": "Type: `boolean_false`, default: `true`. Allow only mismatches in alignments.\n"
+                "description": "Type: `boolean_true`, default: `false`. Allow only mismatches in alignments",
+                "help_text": "Type: `boolean_true`, default: `false`. Allow only mismatches in alignments.\n"
             ,
-                "default": "True"
+                "default": "False"
             }
     
 
@@ -293,10 +293,10 @@
                 "no_match_adapter_wildcards": {
                 "type":
                 "boolean",
-                "description": "Type: `boolean_false`, default: `true`. Do not interpret IUPAC wildcards in adapters",
-                "help_text": "Type: `boolean_false`, default: `true`. Do not interpret IUPAC wildcards in adapters.\n"
+                "description": "Type: `boolean_true`, default: `false`. Do not interpret IUPAC wildcards in adapters",
+                "help_text": "Type: `boolean_true`, default: `false`. Do not interpret IUPAC wildcards in adapters.\n"
             ,
-                "default": "True"
+                "default": "False"
             }
     
 
diff --git a/target/nextflow/falco/.config.vsh.yaml b/target/nextflow/falco/.config.vsh.yaml
index f393113f..96cf3b06 100644
--- a/target/nextflow/falco/.config.vsh.yaml
+++ b/target/nextflow/falco/.config.vsh.yaml
@@ -317,9 +317,9 @@ build_info:
   output: "target/nextflow/falco"
   executable: "target/nextflow/falco/main.nf"
   viash_version: "0.9.0"
-  git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5"
-  git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-8-g0a0edca"
+  git_commit: "add125261c6fa0ed7c9906fc85e7368d2072c4a3"
+  git_remote: "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-9-gadd1252"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/nextflow/falco/main.nf b/target/nextflow/falco/main.nf
index c062a76e..0c870987 100644
--- a/target/nextflow/falco/main.nf
+++ b/target/nextflow/falco/main.nf
@@ -3170,9 +3170,9 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/falco",
     "viash_version" : "0.9.0",
-    "git_commit" : "0a0edcacb5368517d249210022363bd9265f1bf5",
-    "git_remote" : "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox",
-    "git_tag" : "v0.2.0-8-g0a0edca"
+    "git_commit" : "add125261c6fa0ed7c9906fc85e7368d2072c4a3",
+    "git_remote" : "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox",
+    "git_tag" : "v0.2.0-9-gadd1252"
   },
   "package_config" : {
     "name" : "biobox",
diff --git a/target/nextflow/fastp/.config.vsh.yaml b/target/nextflow/fastp/.config.vsh.yaml
index 9002b702..e2dd4bed 100644
--- a/target/nextflow/fastp/.config.vsh.yaml
+++ b/target/nextflow/fastp/.config.vsh.yaml
@@ -1083,9 +1083,9 @@ build_info:
   output: "target/nextflow/fastp"
   executable: "target/nextflow/fastp/main.nf"
   viash_version: "0.9.0"
-  git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5"
-  git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-8-g0a0edca"
+  git_commit: "add125261c6fa0ed7c9906fc85e7368d2072c4a3"
+  git_remote: "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-9-gadd1252"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/nextflow/fastp/main.nf b/target/nextflow/fastp/main.nf
index 59f557a8..bec74ffc 100644
--- a/target/nextflow/fastp/main.nf
+++ b/target/nextflow/fastp/main.nf
@@ -4023,9 +4023,9 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/fastp",
     "viash_version" : "0.9.0",
-    "git_commit" : "0a0edcacb5368517d249210022363bd9265f1bf5",
-    "git_remote" : "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox",
-    "git_tag" : "v0.2.0-8-g0a0edca"
+    "git_commit" : "add125261c6fa0ed7c9906fc85e7368d2072c4a3",
+    "git_remote" : "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox",
+    "git_tag" : "v0.2.0-9-gadd1252"
   },
   "package_config" : {
     "name" : "biobox",
diff --git a/target/nextflow/fastqc/.config.vsh.yaml b/target/nextflow/fastqc/.config.vsh.yaml
index 6f2fef37..0a79d383 100644
--- a/target/nextflow/fastqc/.config.vsh.yaml
+++ b/target/nextflow/fastqc/.config.vsh.yaml
@@ -340,9 +340,9 @@ build_info:
   output: "target/nextflow/fastqc"
   executable: "target/nextflow/fastqc/main.nf"
   viash_version: "0.9.0"
-  git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5"
-  git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-8-g0a0edca"
+  git_commit: "add125261c6fa0ed7c9906fc85e7368d2072c4a3"
+  git_remote: "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-9-gadd1252"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/nextflow/fastqc/main.nf b/target/nextflow/fastqc/main.nf
index 3a545c7e..ae53d965 100644
--- a/target/nextflow/fastqc/main.nf
+++ b/target/nextflow/fastqc/main.nf
@@ -3182,9 +3182,9 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/fastqc",
     "viash_version" : "0.9.0",
-    "git_commit" : "0a0edcacb5368517d249210022363bd9265f1bf5",
-    "git_remote" : "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox",
-    "git_tag" : "v0.2.0-8-g0a0edca"
+    "git_commit" : "add125261c6fa0ed7c9906fc85e7368d2072c4a3",
+    "git_remote" : "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox",
+    "git_tag" : "v0.2.0-9-gadd1252"
   },
   "package_config" : {
     "name" : "biobox",
diff --git a/target/nextflow/featurecounts/.config.vsh.yaml b/target/nextflow/featurecounts/.config.vsh.yaml
index fc0eabb5..371544e3 100644
--- a/target/nextflow/featurecounts/.config.vsh.yaml
+++ b/target/nextflow/featurecounts/.config.vsh.yaml
@@ -645,9 +645,9 @@ build_info:
   output: "target/nextflow/featurecounts"
   executable: "target/nextflow/featurecounts/main.nf"
   viash_version: "0.9.0"
-  git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5"
-  git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-8-g0a0edca"
+  git_commit: "add125261c6fa0ed7c9906fc85e7368d2072c4a3"
+  git_remote: "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-9-gadd1252"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/nextflow/featurecounts/main.nf b/target/nextflow/featurecounts/main.nf
index 25c95dec..45b3bd2c 100644
--- a/target/nextflow/featurecounts/main.nf
+++ b/target/nextflow/featurecounts/main.nf
@@ -3549,9 +3549,9 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/featurecounts",
     "viash_version" : "0.9.0",
-    "git_commit" : "0a0edcacb5368517d249210022363bd9265f1bf5",
-    "git_remote" : "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox",
-    "git_tag" : "v0.2.0-8-g0a0edca"
+    "git_commit" : "add125261c6fa0ed7c9906fc85e7368d2072c4a3",
+    "git_remote" : "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox",
+    "git_tag" : "v0.2.0-9-gadd1252"
   },
   "package_config" : {
     "name" : "biobox",
diff --git a/target/nextflow/fq_subsample/.config.vsh.yaml b/target/nextflow/fq_subsample/.config.vsh.yaml
index b96632a0..24a39ac1 100644
--- a/target/nextflow/fq_subsample/.config.vsh.yaml
+++ b/target/nextflow/fq_subsample/.config.vsh.yaml
@@ -190,9 +190,9 @@ build_info:
   output: "target/nextflow/fq_subsample"
   executable: "target/nextflow/fq_subsample/main.nf"
   viash_version: "0.9.0"
-  git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5"
-  git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-8-g0a0edca"
+  git_commit: "add125261c6fa0ed7c9906fc85e7368d2072c4a3"
+  git_remote: "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-9-gadd1252"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/nextflow/fq_subsample/main.nf b/target/nextflow/fq_subsample/main.nf
index a55ce1c1..4ffb71b8 100644
--- a/target/nextflow/fq_subsample/main.nf
+++ b/target/nextflow/fq_subsample/main.nf
@@ -3032,9 +3032,9 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/fq_subsample",
     "viash_version" : "0.9.0",
-    "git_commit" : "0a0edcacb5368517d249210022363bd9265f1bf5",
-    "git_remote" : "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox",
-    "git_tag" : "v0.2.0-8-g0a0edca"
+    "git_commit" : "add125261c6fa0ed7c9906fc85e7368d2072c4a3",
+    "git_remote" : "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox",
+    "git_tag" : "v0.2.0-9-gadd1252"
   },
   "package_config" : {
     "name" : "biobox",
diff --git a/target/nextflow/gffread/.config.vsh.yaml b/target/nextflow/gffread/.config.vsh.yaml
index c3b8ddf8..f7a99b73 100644
--- a/target/nextflow/gffread/.config.vsh.yaml
+++ b/target/nextflow/gffread/.config.vsh.yaml
@@ -685,9 +685,9 @@ build_info:
   output: "target/nextflow/gffread"
   executable: "target/nextflow/gffread/main.nf"
   viash_version: "0.9.0"
-  git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5"
-  git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-8-g0a0edca"
+  git_commit: "add125261c6fa0ed7c9906fc85e7368d2072c4a3"
+  git_remote: "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-9-gadd1252"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/nextflow/gffread/main.nf b/target/nextflow/gffread/main.nf
index 787ac45d..f8c89193 100644
--- a/target/nextflow/gffread/main.nf
+++ b/target/nextflow/gffread/main.nf
@@ -3606,9 +3606,9 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/gffread",
     "viash_version" : "0.9.0",
-    "git_commit" : "0a0edcacb5368517d249210022363bd9265f1bf5",
-    "git_remote" : "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox",
-    "git_tag" : "v0.2.0-8-g0a0edca"
+    "git_commit" : "add125261c6fa0ed7c9906fc85e7368d2072c4a3",
+    "git_remote" : "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox",
+    "git_tag" : "v0.2.0-9-gadd1252"
   },
   "package_config" : {
     "name" : "biobox",
diff --git a/target/nextflow/kallisto/kallisto_index/.config.vsh.yaml b/target/nextflow/kallisto/kallisto_index/.config.vsh.yaml
index 2d7d0d69..0eca68c0 100644
--- a/target/nextflow/kallisto/kallisto_index/.config.vsh.yaml
+++ b/target/nextflow/kallisto/kallisto_index/.config.vsh.yaml
@@ -218,9 +218,9 @@ build_info:
   output: "target/nextflow/kallisto/kallisto_index"
   executable: "target/nextflow/kallisto/kallisto_index/main.nf"
   viash_version: "0.9.0"
-  git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5"
-  git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-8-g0a0edca"
+  git_commit: "add125261c6fa0ed7c9906fc85e7368d2072c4a3"
+  git_remote: "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-9-gadd1252"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/nextflow/kallisto/kallisto_index/main.nf b/target/nextflow/kallisto/kallisto_index/main.nf
index 59736c14..0f74c331 100644
--- a/target/nextflow/kallisto/kallisto_index/main.nf
+++ b/target/nextflow/kallisto/kallisto_index/main.nf
@@ -3071,9 +3071,9 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/kallisto/kallisto_index",
     "viash_version" : "0.9.0",
-    "git_commit" : "0a0edcacb5368517d249210022363bd9265f1bf5",
-    "git_remote" : "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox",
-    "git_tag" : "v0.2.0-8-g0a0edca"
+    "git_commit" : "add125261c6fa0ed7c9906fc85e7368d2072c4a3",
+    "git_remote" : "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox",
+    "git_tag" : "v0.2.0-9-gadd1252"
   },
   "package_config" : {
     "name" : "biobox",
diff --git a/target/nextflow/kallisto/kallisto_quant/.config.vsh.yaml b/target/nextflow/kallisto/kallisto_quant/.config.vsh.yaml
index e4da8047..1c54bba2 100644
--- a/target/nextflow/kallisto/kallisto_quant/.config.vsh.yaml
+++ b/target/nextflow/kallisto/kallisto_quant/.config.vsh.yaml
@@ -234,9 +234,9 @@ build_info:
   output: "target/nextflow/kallisto/kallisto_quant"
   executable: "target/nextflow/kallisto/kallisto_quant/main.nf"
   viash_version: "0.9.0"
-  git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5"
-  git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-8-g0a0edca"
+  git_commit: "add125261c6fa0ed7c9906fc85e7368d2072c4a3"
+  git_remote: "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-9-gadd1252"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/nextflow/kallisto/kallisto_quant/main.nf b/target/nextflow/kallisto/kallisto_quant/main.nf
index ee16a5ed..177e1cdb 100644
--- a/target/nextflow/kallisto/kallisto_quant/main.nf
+++ b/target/nextflow/kallisto/kallisto_quant/main.nf
@@ -3092,9 +3092,9 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/kallisto/kallisto_quant",
     "viash_version" : "0.9.0",
-    "git_commit" : "0a0edcacb5368517d249210022363bd9265f1bf5",
-    "git_remote" : "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox",
-    "git_tag" : "v0.2.0-8-g0a0edca"
+    "git_commit" : "add125261c6fa0ed7c9906fc85e7368d2072c4a3",
+    "git_remote" : "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox",
+    "git_tag" : "v0.2.0-9-gadd1252"
   },
   "package_config" : {
     "name" : "biobox",
diff --git a/target/nextflow/lofreq/lofreq_call/.config.vsh.yaml b/target/nextflow/lofreq/lofreq_call/.config.vsh.yaml
index 4ba17d53..90878229 100644
--- a/target/nextflow/lofreq/lofreq_call/.config.vsh.yaml
+++ b/target/nextflow/lofreq/lofreq_call/.config.vsh.yaml
@@ -507,9 +507,9 @@ build_info:
   output: "target/nextflow/lofreq/lofreq_call"
   executable: "target/nextflow/lofreq/lofreq_call/main.nf"
   viash_version: "0.9.0"
-  git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5"
-  git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-8-g0a0edca"
+  git_commit: "add125261c6fa0ed7c9906fc85e7368d2072c4a3"
+  git_remote: "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-9-gadd1252"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/nextflow/lofreq/lofreq_call/main.nf b/target/nextflow/lofreq/lofreq_call/main.nf
index f67cfb3f..335ab6e1 100644
--- a/target/nextflow/lofreq/lofreq_call/main.nf
+++ b/target/nextflow/lofreq/lofreq_call/main.nf
@@ -3414,9 +3414,9 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/lofreq/lofreq_call",
     "viash_version" : "0.9.0",
-    "git_commit" : "0a0edcacb5368517d249210022363bd9265f1bf5",
-    "git_remote" : "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox",
-    "git_tag" : "v0.2.0-8-g0a0edca"
+    "git_commit" : "add125261c6fa0ed7c9906fc85e7368d2072c4a3",
+    "git_remote" : "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox",
+    "git_tag" : "v0.2.0-9-gadd1252"
   },
   "package_config" : {
     "name" : "biobox",
diff --git a/target/nextflow/lofreq/lofreq_indelqual/.config.vsh.yaml b/target/nextflow/lofreq/lofreq_indelqual/.config.vsh.yaml
index f1bb8566..8e3affc7 100644
--- a/target/nextflow/lofreq/lofreq_indelqual/.config.vsh.yaml
+++ b/target/nextflow/lofreq/lofreq_indelqual/.config.vsh.yaml
@@ -215,9 +215,9 @@ build_info:
   output: "target/nextflow/lofreq/lofreq_indelqual"
   executable: "target/nextflow/lofreq/lofreq_indelqual/main.nf"
   viash_version: "0.9.0"
-  git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5"
-  git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-8-g0a0edca"
+  git_commit: "add125261c6fa0ed7c9906fc85e7368d2072c4a3"
+  git_remote: "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-9-gadd1252"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/nextflow/lofreq/lofreq_indelqual/main.nf b/target/nextflow/lofreq/lofreq_indelqual/main.nf
index a16bf811..7ec2089f 100644
--- a/target/nextflow/lofreq/lofreq_indelqual/main.nf
+++ b/target/nextflow/lofreq/lofreq_indelqual/main.nf
@@ -3077,9 +3077,9 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/lofreq/lofreq_indelqual",
     "viash_version" : "0.9.0",
-    "git_commit" : "0a0edcacb5368517d249210022363bd9265f1bf5",
-    "git_remote" : "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox",
-    "git_tag" : "v0.2.0-8-g0a0edca"
+    "git_commit" : "add125261c6fa0ed7c9906fc85e7368d2072c4a3",
+    "git_remote" : "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox",
+    "git_tag" : "v0.2.0-9-gadd1252"
   },
   "package_config" : {
     "name" : "biobox",
diff --git a/target/nextflow/multiqc/.config.vsh.yaml b/target/nextflow/multiqc/.config.vsh.yaml
index 0f3753c7..41e3b198 100644
--- a/target/nextflow/multiqc/.config.vsh.yaml
+++ b/target/nextflow/multiqc/.config.vsh.yaml
@@ -456,9 +456,9 @@ build_info:
   output: "target/nextflow/multiqc"
   executable: "target/nextflow/multiqc/main.nf"
   viash_version: "0.9.0"
-  git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5"
-  git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-8-g0a0edca"
+  git_commit: "add125261c6fa0ed7c9906fc85e7368d2072c4a3"
+  git_remote: "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-9-gadd1252"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/nextflow/multiqc/main.nf b/target/nextflow/multiqc/main.nf
index 4be7cb56..afc91c43 100644
--- a/target/nextflow/multiqc/main.nf
+++ b/target/nextflow/multiqc/main.nf
@@ -3366,9 +3366,9 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/multiqc",
     "viash_version" : "0.9.0",
-    "git_commit" : "0a0edcacb5368517d249210022363bd9265f1bf5",
-    "git_remote" : "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox",
-    "git_tag" : "v0.2.0-8-g0a0edca"
+    "git_commit" : "add125261c6fa0ed7c9906fc85e7368d2072c4a3",
+    "git_remote" : "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox",
+    "git_tag" : "v0.2.0-9-gadd1252"
   },
   "package_config" : {
     "name" : "biobox",
diff --git a/target/nextflow/pear/.config.vsh.yaml b/target/nextflow/pear/.config.vsh.yaml
index 1ead019e..cd83f5cf 100644
--- a/target/nextflow/pear/.config.vsh.yaml
+++ b/target/nextflow/pear/.config.vsh.yaml
@@ -398,9 +398,9 @@ build_info:
   output: "target/nextflow/pear"
   executable: "target/nextflow/pear/main.nf"
   viash_version: "0.9.0"
-  git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5"
-  git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-8-g0a0edca"
+  git_commit: "add125261c6fa0ed7c9906fc85e7368d2072c4a3"
+  git_remote: "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-9-gadd1252"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/nextflow/pear/main.nf b/target/nextflow/pear/main.nf
index 9f1a62b3..059b29da 100644
--- a/target/nextflow/pear/main.nf
+++ b/target/nextflow/pear/main.nf
@@ -3259,9 +3259,9 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/pear",
     "viash_version" : "0.9.0",
-    "git_commit" : "0a0edcacb5368517d249210022363bd9265f1bf5",
-    "git_remote" : "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox",
-    "git_tag" : "v0.2.0-8-g0a0edca"
+    "git_commit" : "add125261c6fa0ed7c9906fc85e7368d2072c4a3",
+    "git_remote" : "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox",
+    "git_tag" : "v0.2.0-9-gadd1252"
   },
   "package_config" : {
     "name" : "biobox",
diff --git a/target/nextflow/qualimap/qualimap_rnaseq/.config.vsh.yaml b/target/nextflow/qualimap/qualimap_rnaseq/.config.vsh.yaml
index c4fcacb9..e523b6e5 100644
--- a/target/nextflow/qualimap/qualimap_rnaseq/.config.vsh.yaml
+++ b/target/nextflow/qualimap/qualimap_rnaseq/.config.vsh.yaml
@@ -264,9 +264,9 @@ build_info:
   output: "target/nextflow/qualimap/qualimap_rnaseq"
   executable: "target/nextflow/qualimap/qualimap_rnaseq/main.nf"
   viash_version: "0.9.0"
-  git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5"
-  git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-8-g0a0edca"
+  git_commit: "add125261c6fa0ed7c9906fc85e7368d2072c4a3"
+  git_remote: "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-9-gadd1252"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/nextflow/qualimap/qualimap_rnaseq/main.nf b/target/nextflow/qualimap/qualimap_rnaseq/main.nf
index 2c7360c6..2c3f9308 100644
--- a/target/nextflow/qualimap/qualimap_rnaseq/main.nf
+++ b/target/nextflow/qualimap/qualimap_rnaseq/main.nf
@@ -3129,9 +3129,9 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/qualimap/qualimap_rnaseq",
     "viash_version" : "0.9.0",
-    "git_commit" : "0a0edcacb5368517d249210022363bd9265f1bf5",
-    "git_remote" : "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox",
-    "git_tag" : "v0.2.0-8-g0a0edca"
+    "git_commit" : "add125261c6fa0ed7c9906fc85e7368d2072c4a3",
+    "git_remote" : "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox",
+    "git_tag" : "v0.2.0-9-gadd1252"
   },
   "package_config" : {
     "name" : "biobox",
diff --git a/target/nextflow/rsem/rsem_calculate_expression/.config.vsh.yaml b/target/nextflow/rsem/rsem_calculate_expression/.config.vsh.yaml
index 923c27f6..bc840c80 100644
--- a/target/nextflow/rsem/rsem_calculate_expression/.config.vsh.yaml
+++ b/target/nextflow/rsem/rsem_calculate_expression/.config.vsh.yaml
@@ -852,9 +852,9 @@ build_info:
   output: "target/nextflow/rsem/rsem_calculate_expression"
   executable: "target/nextflow/rsem/rsem_calculate_expression/main.nf"
   viash_version: "0.9.0"
-  git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5"
-  git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-8-g0a0edca"
+  git_commit: "add125261c6fa0ed7c9906fc85e7368d2072c4a3"
+  git_remote: "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-9-gadd1252"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/nextflow/rsem/rsem_calculate_expression/main.nf b/target/nextflow/rsem/rsem_calculate_expression/main.nf
index 8261addf..67dce4c4 100644
--- a/target/nextflow/rsem/rsem_calculate_expression/main.nf
+++ b/target/nextflow/rsem/rsem_calculate_expression/main.nf
@@ -3661,9 +3661,9 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/rsem/rsem_calculate_expression",
     "viash_version" : "0.9.0",
-    "git_commit" : "0a0edcacb5368517d249210022363bd9265f1bf5",
-    "git_remote" : "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox",
-    "git_tag" : "v0.2.0-8-g0a0edca"
+    "git_commit" : "add125261c6fa0ed7c9906fc85e7368d2072c4a3",
+    "git_remote" : "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox",
+    "git_tag" : "v0.2.0-9-gadd1252"
   },
   "package_config" : {
     "name" : "biobox",
diff --git a/target/nextflow/rsem/rsem_prepare_reference/.config.vsh.yaml b/target/nextflow/rsem/rsem_prepare_reference/.config.vsh.yaml
index 997945a0..89785127 100644
--- a/target/nextflow/rsem/rsem_prepare_reference/.config.vsh.yaml
+++ b/target/nextflow/rsem/rsem_prepare_reference/.config.vsh.yaml
@@ -416,9 +416,9 @@ build_info:
   output: "target/nextflow/rsem/rsem_prepare_reference"
   executable: "target/nextflow/rsem/rsem_prepare_reference/main.nf"
   viash_version: "0.9.0"
-  git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5"
-  git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-8-g0a0edca"
+  git_commit: "add125261c6fa0ed7c9906fc85e7368d2072c4a3"
+  git_remote: "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-9-gadd1252"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/nextflow/rsem/rsem_prepare_reference/main.nf b/target/nextflow/rsem/rsem_prepare_reference/main.nf
index 65b5b312..99d768ee 100644
--- a/target/nextflow/rsem/rsem_prepare_reference/main.nf
+++ b/target/nextflow/rsem/rsem_prepare_reference/main.nf
@@ -3245,9 +3245,9 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/rsem/rsem_prepare_reference",
     "viash_version" : "0.9.0",
-    "git_commit" : "0a0edcacb5368517d249210022363bd9265f1bf5",
-    "git_remote" : "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox",
-    "git_tag" : "v0.2.0-8-g0a0edca"
+    "git_commit" : "add125261c6fa0ed7c9906fc85e7368d2072c4a3",
+    "git_remote" : "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox",
+    "git_tag" : "v0.2.0-9-gadd1252"
   },
   "package_config" : {
     "name" : "biobox",
diff --git a/target/nextflow/salmon/salmon_index/.config.vsh.yaml b/target/nextflow/salmon/salmon_index/.config.vsh.yaml
index 1c787282..094f8156 100644
--- a/target/nextflow/salmon/salmon_index/.config.vsh.yaml
+++ b/target/nextflow/salmon/salmon_index/.config.vsh.yaml
@@ -277,9 +277,9 @@ build_info:
   output: "target/nextflow/salmon/salmon_index"
   executable: "target/nextflow/salmon/salmon_index/main.nf"
   viash_version: "0.9.0"
-  git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5"
-  git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-8-g0a0edca"
+  git_commit: "add125261c6fa0ed7c9906fc85e7368d2072c4a3"
+  git_remote: "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-9-gadd1252"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/nextflow/salmon/salmon_index/main.nf b/target/nextflow/salmon/salmon_index/main.nf
index 2f232df3..4de67be5 100644
--- a/target/nextflow/salmon/salmon_index/main.nf
+++ b/target/nextflow/salmon/salmon_index/main.nf
@@ -3129,9 +3129,9 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/salmon/salmon_index",
     "viash_version" : "0.9.0",
-    "git_commit" : "0a0edcacb5368517d249210022363bd9265f1bf5",
-    "git_remote" : "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox",
-    "git_tag" : "v0.2.0-8-g0a0edca"
+    "git_commit" : "add125261c6fa0ed7c9906fc85e7368d2072c4a3",
+    "git_remote" : "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox",
+    "git_tag" : "v0.2.0-9-gadd1252"
   },
   "package_config" : {
     "name" : "biobox",
diff --git a/target/nextflow/salmon/salmon_quant/.config.vsh.yaml b/target/nextflow/salmon/salmon_quant/.config.vsh.yaml
index 89e4163a..70a0ffed 100644
--- a/target/nextflow/salmon/salmon_quant/.config.vsh.yaml
+++ b/target/nextflow/salmon/salmon_quant/.config.vsh.yaml
@@ -1173,9 +1173,9 @@ build_info:
   output: "target/nextflow/salmon/salmon_quant"
   executable: "target/nextflow/salmon/salmon_quant/main.nf"
   viash_version: "0.9.0"
-  git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5"
-  git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-8-g0a0edca"
+  git_commit: "add125261c6fa0ed7c9906fc85e7368d2072c4a3"
+  git_remote: "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-9-gadd1252"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/nextflow/salmon/salmon_quant/main.nf b/target/nextflow/salmon/salmon_quant/main.nf
index 75d72cc1..60f30b07 100644
--- a/target/nextflow/salmon/salmon_quant/main.nf
+++ b/target/nextflow/salmon/salmon_quant/main.nf
@@ -3964,9 +3964,9 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/salmon/salmon_quant",
     "viash_version" : "0.9.0",
-    "git_commit" : "0a0edcacb5368517d249210022363bd9265f1bf5",
-    "git_remote" : "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox",
-    "git_tag" : "v0.2.0-8-g0a0edca"
+    "git_commit" : "add125261c6fa0ed7c9906fc85e7368d2072c4a3",
+    "git_remote" : "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox",
+    "git_tag" : "v0.2.0-9-gadd1252"
   },
   "package_config" : {
     "name" : "biobox",
diff --git a/target/nextflow/samtools/samtools_collate/.config.vsh.yaml b/target/nextflow/samtools/samtools_collate/.config.vsh.yaml
index a2915919..a2d2681a 100644
--- a/target/nextflow/samtools/samtools_collate/.config.vsh.yaml
+++ b/target/nextflow/samtools/samtools_collate/.config.vsh.yaml
@@ -264,9 +264,9 @@ build_info:
   output: "target/nextflow/samtools/samtools_collate"
   executable: "target/nextflow/samtools/samtools_collate/main.nf"
   viash_version: "0.9.0"
-  git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5"
-  git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-8-g0a0edca"
+  git_commit: "add125261c6fa0ed7c9906fc85e7368d2072c4a3"
+  git_remote: "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-9-gadd1252"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/nextflow/samtools/samtools_collate/main.nf b/target/nextflow/samtools/samtools_collate/main.nf
index 8b301629..d5b178eb 100644
--- a/target/nextflow/samtools/samtools_collate/main.nf
+++ b/target/nextflow/samtools/samtools_collate/main.nf
@@ -3140,9 +3140,9 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/samtools/samtools_collate",
     "viash_version" : "0.9.0",
-    "git_commit" : "0a0edcacb5368517d249210022363bd9265f1bf5",
-    "git_remote" : "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox",
-    "git_tag" : "v0.2.0-8-g0a0edca"
+    "git_commit" : "add125261c6fa0ed7c9906fc85e7368d2072c4a3",
+    "git_remote" : "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox",
+    "git_tag" : "v0.2.0-9-gadd1252"
   },
   "package_config" : {
     "name" : "biobox",
diff --git a/target/nextflow/samtools/samtools_faidx/.config.vsh.yaml b/target/nextflow/samtools/samtools_faidx/.config.vsh.yaml
index 0b8d31e9..cc67dc00 100644
--- a/target/nextflow/samtools/samtools_faidx/.config.vsh.yaml
+++ b/target/nextflow/samtools/samtools_faidx/.config.vsh.yaml
@@ -243,9 +243,9 @@ build_info:
   output: "target/nextflow/samtools/samtools_faidx"
   executable: "target/nextflow/samtools/samtools_faidx/main.nf"
   viash_version: "0.9.0"
-  git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5"
-  git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-8-g0a0edca"
+  git_commit: "add125261c6fa0ed7c9906fc85e7368d2072c4a3"
+  git_remote: "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-9-gadd1252"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/nextflow/samtools/samtools_faidx/main.nf b/target/nextflow/samtools/samtools_faidx/main.nf
index 0e90904b..352f17f8 100644
--- a/target/nextflow/samtools/samtools_faidx/main.nf
+++ b/target/nextflow/samtools/samtools_faidx/main.nf
@@ -3112,9 +3112,9 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/samtools/samtools_faidx",
     "viash_version" : "0.9.0",
-    "git_commit" : "0a0edcacb5368517d249210022363bd9265f1bf5",
-    "git_remote" : "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox",
-    "git_tag" : "v0.2.0-8-g0a0edca"
+    "git_commit" : "add125261c6fa0ed7c9906fc85e7368d2072c4a3",
+    "git_remote" : "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox",
+    "git_tag" : "v0.2.0-9-gadd1252"
   },
   "package_config" : {
     "name" : "biobox",
diff --git a/target/nextflow/samtools/samtools_fasta/.config.vsh.yaml b/target/nextflow/samtools/samtools_fasta/.config.vsh.yaml
index c0117426..c00734e6 100644
--- a/target/nextflow/samtools/samtools_fasta/.config.vsh.yaml
+++ b/target/nextflow/samtools/samtools_fasta/.config.vsh.yaml
@@ -433,9 +433,9 @@ build_info:
   output: "target/nextflow/samtools/samtools_fasta"
   executable: "target/nextflow/samtools/samtools_fasta/main.nf"
   viash_version: "0.9.0"
-  git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5"
-  git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-8-g0a0edca"
+  git_commit: "add125261c6fa0ed7c9906fc85e7368d2072c4a3"
+  git_remote: "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-9-gadd1252"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/nextflow/samtools/samtools_fasta/main.nf b/target/nextflow/samtools/samtools_fasta/main.nf
index 78b2bfeb..ae7d1b25 100644
--- a/target/nextflow/samtools/samtools_fasta/main.nf
+++ b/target/nextflow/samtools/samtools_fasta/main.nf
@@ -3304,9 +3304,9 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/samtools/samtools_fasta",
     "viash_version" : "0.9.0",
-    "git_commit" : "0a0edcacb5368517d249210022363bd9265f1bf5",
-    "git_remote" : "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox",
-    "git_tag" : "v0.2.0-8-g0a0edca"
+    "git_commit" : "add125261c6fa0ed7c9906fc85e7368d2072c4a3",
+    "git_remote" : "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox",
+    "git_tag" : "v0.2.0-9-gadd1252"
   },
   "package_config" : {
     "name" : "biobox",
diff --git a/target/nextflow/samtools/samtools_fastq/.config.vsh.yaml b/target/nextflow/samtools/samtools_fastq/.config.vsh.yaml
index 3a3fa9c7..845bdc27 100644
--- a/target/nextflow/samtools/samtools_fastq/.config.vsh.yaml
+++ b/target/nextflow/samtools/samtools_fastq/.config.vsh.yaml
@@ -433,9 +433,9 @@ build_info:
   output: "target/nextflow/samtools/samtools_fastq"
   executable: "target/nextflow/samtools/samtools_fastq/main.nf"
   viash_version: "0.9.0"
-  git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5"
-  git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-8-g0a0edca"
+  git_commit: "add125261c6fa0ed7c9906fc85e7368d2072c4a3"
+  git_remote: "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-9-gadd1252"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/nextflow/samtools/samtools_fastq/main.nf b/target/nextflow/samtools/samtools_fastq/main.nf
index 8f49a573..17aecc9a 100644
--- a/target/nextflow/samtools/samtools_fastq/main.nf
+++ b/target/nextflow/samtools/samtools_fastq/main.nf
@@ -3304,9 +3304,9 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/samtools/samtools_fastq",
     "viash_version" : "0.9.0",
-    "git_commit" : "0a0edcacb5368517d249210022363bd9265f1bf5",
-    "git_remote" : "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox",
-    "git_tag" : "v0.2.0-8-g0a0edca"
+    "git_commit" : "add125261c6fa0ed7c9906fc85e7368d2072c4a3",
+    "git_remote" : "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox",
+    "git_tag" : "v0.2.0-9-gadd1252"
   },
   "package_config" : {
     "name" : "biobox",
diff --git a/target/nextflow/samtools/samtools_flagstat/.config.vsh.yaml b/target/nextflow/samtools/samtools_flagstat/.config.vsh.yaml
index 9661f20d..02e0e914 100644
--- a/target/nextflow/samtools/samtools_flagstat/.config.vsh.yaml
+++ b/target/nextflow/samtools/samtools_flagstat/.config.vsh.yaml
@@ -173,9 +173,9 @@ build_info:
   output: "target/nextflow/samtools/samtools_flagstat"
   executable: "target/nextflow/samtools/samtools_flagstat/main.nf"
   viash_version: "0.9.0"
-  git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5"
-  git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-8-g0a0edca"
+  git_commit: "add125261c6fa0ed7c9906fc85e7368d2072c4a3"
+  git_remote: "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-9-gadd1252"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/nextflow/samtools/samtools_flagstat/main.nf b/target/nextflow/samtools/samtools_flagstat/main.nf
index dda727f6..5b3de654 100644
--- a/target/nextflow/samtools/samtools_flagstat/main.nf
+++ b/target/nextflow/samtools/samtools_flagstat/main.nf
@@ -3028,9 +3028,9 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/samtools/samtools_flagstat",
     "viash_version" : "0.9.0",
-    "git_commit" : "0a0edcacb5368517d249210022363bd9265f1bf5",
-    "git_remote" : "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox",
-    "git_tag" : "v0.2.0-8-g0a0edca"
+    "git_commit" : "add125261c6fa0ed7c9906fc85e7368d2072c4a3",
+    "git_remote" : "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox",
+    "git_tag" : "v0.2.0-9-gadd1252"
   },
   "package_config" : {
     "name" : "biobox",
diff --git a/target/nextflow/samtools/samtools_idxstats/.config.vsh.yaml b/target/nextflow/samtools/samtools_idxstats/.config.vsh.yaml
index 9ffa7411..ec6145a0 100644
--- a/target/nextflow/samtools/samtools_idxstats/.config.vsh.yaml
+++ b/target/nextflow/samtools/samtools_idxstats/.config.vsh.yaml
@@ -183,9 +183,9 @@ build_info:
   output: "target/nextflow/samtools/samtools_idxstats"
   executable: "target/nextflow/samtools/samtools_idxstats/main.nf"
   viash_version: "0.9.0"
-  git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5"
-  git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-8-g0a0edca"
+  git_commit: "add125261c6fa0ed7c9906fc85e7368d2072c4a3"
+  git_remote: "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-9-gadd1252"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/nextflow/samtools/samtools_idxstats/main.nf b/target/nextflow/samtools/samtools_idxstats/main.nf
index 1e4c453d..a463f520 100644
--- a/target/nextflow/samtools/samtools_idxstats/main.nf
+++ b/target/nextflow/samtools/samtools_idxstats/main.nf
@@ -3040,9 +3040,9 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/samtools/samtools_idxstats",
     "viash_version" : "0.9.0",
-    "git_commit" : "0a0edcacb5368517d249210022363bd9265f1bf5",
-    "git_remote" : "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox",
-    "git_tag" : "v0.2.0-8-g0a0edca"
+    "git_commit" : "add125261c6fa0ed7c9906fc85e7368d2072c4a3",
+    "git_remote" : "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox",
+    "git_tag" : "v0.2.0-9-gadd1252"
   },
   "package_config" : {
     "name" : "biobox",
diff --git a/target/nextflow/samtools/samtools_index/.config.vsh.yaml b/target/nextflow/samtools/samtools_index/.config.vsh.yaml
index f4b2af03..a2a1d11c 100644
--- a/target/nextflow/samtools/samtools_index/.config.vsh.yaml
+++ b/target/nextflow/samtools/samtools_index/.config.vsh.yaml
@@ -189,9 +189,9 @@ build_info:
   output: "target/nextflow/samtools/samtools_index"
   executable: "target/nextflow/samtools/samtools_index/main.nf"
   viash_version: "0.9.0"
-  git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5"
-  git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-8-g0a0edca"
+  git_commit: "add125261c6fa0ed7c9906fc85e7368d2072c4a3"
+  git_remote: "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-9-gadd1252"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/nextflow/samtools/samtools_index/main.nf b/target/nextflow/samtools/samtools_index/main.nf
index 1a1400df..1c1f9c44 100644
--- a/target/nextflow/samtools/samtools_index/main.nf
+++ b/target/nextflow/samtools/samtools_index/main.nf
@@ -3053,9 +3053,9 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/samtools/samtools_index",
     "viash_version" : "0.9.0",
-    "git_commit" : "0a0edcacb5368517d249210022363bd9265f1bf5",
-    "git_remote" : "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox",
-    "git_tag" : "v0.2.0-8-g0a0edca"
+    "git_commit" : "add125261c6fa0ed7c9906fc85e7368d2072c4a3",
+    "git_remote" : "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox",
+    "git_tag" : "v0.2.0-9-gadd1252"
   },
   "package_config" : {
     "name" : "biobox",
diff --git a/target/nextflow/samtools/samtools_sort/.config.vsh.yaml b/target/nextflow/samtools/samtools_sort/.config.vsh.yaml
index 8ecb3940..fd0a6c7a 100644
--- a/target/nextflow/samtools/samtools_sort/.config.vsh.yaml
+++ b/target/nextflow/samtools/samtools_sort/.config.vsh.yaml
@@ -332,9 +332,9 @@ build_info:
   output: "target/nextflow/samtools/samtools_sort"
   executable: "target/nextflow/samtools/samtools_sort/main.nf"
   viash_version: "0.9.0"
-  git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5"
-  git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-8-g0a0edca"
+  git_commit: "add125261c6fa0ed7c9906fc85e7368d2072c4a3"
+  git_remote: "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-9-gadd1252"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/nextflow/samtools/samtools_sort/main.nf b/target/nextflow/samtools/samtools_sort/main.nf
index 099a113b..e56ae685 100644
--- a/target/nextflow/samtools/samtools_sort/main.nf
+++ b/target/nextflow/samtools/samtools_sort/main.nf
@@ -3225,9 +3225,9 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/samtools/samtools_sort",
     "viash_version" : "0.9.0",
-    "git_commit" : "0a0edcacb5368517d249210022363bd9265f1bf5",
-    "git_remote" : "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox",
-    "git_tag" : "v0.2.0-8-g0a0edca"
+    "git_commit" : "add125261c6fa0ed7c9906fc85e7368d2072c4a3",
+    "git_remote" : "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox",
+    "git_tag" : "v0.2.0-9-gadd1252"
   },
   "package_config" : {
     "name" : "biobox",
diff --git a/target/nextflow/samtools/samtools_stats/.config.vsh.yaml b/target/nextflow/samtools/samtools_stats/.config.vsh.yaml
index 60a892ca..3f94667d 100644
--- a/target/nextflow/samtools/samtools_stats/.config.vsh.yaml
+++ b/target/nextflow/samtools/samtools_stats/.config.vsh.yaml
@@ -401,9 +401,9 @@ build_info:
   output: "target/nextflow/samtools/samtools_stats"
   executable: "target/nextflow/samtools/samtools_stats/main.nf"
   viash_version: "0.9.0"
-  git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5"
-  git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-8-g0a0edca"
+  git_commit: "add125261c6fa0ed7c9906fc85e7368d2072c4a3"
+  git_remote: "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-9-gadd1252"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/nextflow/samtools/samtools_stats/main.nf b/target/nextflow/samtools/samtools_stats/main.nf
index 9c85893b..df7de859 100644
--- a/target/nextflow/samtools/samtools_stats/main.nf
+++ b/target/nextflow/samtools/samtools_stats/main.nf
@@ -3295,9 +3295,9 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/samtools/samtools_stats",
     "viash_version" : "0.9.0",
-    "git_commit" : "0a0edcacb5368517d249210022363bd9265f1bf5",
-    "git_remote" : "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox",
-    "git_tag" : "v0.2.0-8-g0a0edca"
+    "git_commit" : "add125261c6fa0ed7c9906fc85e7368d2072c4a3",
+    "git_remote" : "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox",
+    "git_tag" : "v0.2.0-9-gadd1252"
   },
   "package_config" : {
     "name" : "biobox",
diff --git a/target/nextflow/samtools/samtools_view/.config.vsh.yaml b/target/nextflow/samtools/samtools_view/.config.vsh.yaml
index 91c2f8cb..829b2ed3 100644
--- a/target/nextflow/samtools/samtools_view/.config.vsh.yaml
+++ b/target/nextflow/samtools/samtools_view/.config.vsh.yaml
@@ -665,9 +665,9 @@ build_info:
   output: "target/nextflow/samtools/samtools_view"
   executable: "target/nextflow/samtools/samtools_view/main.nf"
   viash_version: "0.9.0"
-  git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5"
-  git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-8-g0a0edca"
+  git_commit: "add125261c6fa0ed7c9906fc85e7368d2072c4a3"
+  git_remote: "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-9-gadd1252"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/nextflow/samtools/samtools_view/main.nf b/target/nextflow/samtools/samtools_view/main.nf
index d3d78323..6ea26375 100644
--- a/target/nextflow/samtools/samtools_view/main.nf
+++ b/target/nextflow/samtools/samtools_view/main.nf
@@ -3476,9 +3476,9 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/samtools/samtools_view",
     "viash_version" : "0.9.0",
-    "git_commit" : "0a0edcacb5368517d249210022363bd9265f1bf5",
-    "git_remote" : "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox",
-    "git_tag" : "v0.2.0-8-g0a0edca"
+    "git_commit" : "add125261c6fa0ed7c9906fc85e7368d2072c4a3",
+    "git_remote" : "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox",
+    "git_tag" : "v0.2.0-9-gadd1252"
   },
   "package_config" : {
     "name" : "biobox",
diff --git a/target/nextflow/seqtk/seqtk_sample/.config.vsh.yaml b/target/nextflow/seqtk/seqtk_sample/.config.vsh.yaml
index 70988287..333a06b9 100644
--- a/target/nextflow/seqtk/seqtk_sample/.config.vsh.yaml
+++ b/target/nextflow/seqtk/seqtk_sample/.config.vsh.yaml
@@ -173,9 +173,9 @@ build_info:
   output: "target/nextflow/seqtk/seqtk_sample"
   executable: "target/nextflow/seqtk/seqtk_sample/main.nf"
   viash_version: "0.9.0"
-  git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5"
-  git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-8-g0a0edca"
+  git_commit: "add125261c6fa0ed7c9906fc85e7368d2072c4a3"
+  git_remote: "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-9-gadd1252"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/nextflow/seqtk/seqtk_sample/main.nf b/target/nextflow/seqtk/seqtk_sample/main.nf
index d2ca1afa..37a181d7 100644
--- a/target/nextflow/seqtk/seqtk_sample/main.nf
+++ b/target/nextflow/seqtk/seqtk_sample/main.nf
@@ -3030,9 +3030,9 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/seqtk/seqtk_sample",
     "viash_version" : "0.9.0",
-    "git_commit" : "0a0edcacb5368517d249210022363bd9265f1bf5",
-    "git_remote" : "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox",
-    "git_tag" : "v0.2.0-8-g0a0edca"
+    "git_commit" : "add125261c6fa0ed7c9906fc85e7368d2072c4a3",
+    "git_remote" : "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox",
+    "git_tag" : "v0.2.0-9-gadd1252"
   },
   "package_config" : {
     "name" : "biobox",
diff --git a/target/nextflow/seqtk/seqtk_subseq/.config.vsh.yaml b/target/nextflow/seqtk/seqtk_subseq/.config.vsh.yaml
index bd076ee2..fcadef42 100644
--- a/target/nextflow/seqtk/seqtk_subseq/.config.vsh.yaml
+++ b/target/nextflow/seqtk/seqtk_subseq/.config.vsh.yaml
@@ -196,9 +196,9 @@ build_info:
   output: "target/nextflow/seqtk/seqtk_subseq"
   executable: "target/nextflow/seqtk/seqtk_subseq/main.nf"
   viash_version: "0.9.0"
-  git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5"
-  git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-8-g0a0edca"
+  git_commit: "add125261c6fa0ed7c9906fc85e7368d2072c4a3"
+  git_remote: "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-9-gadd1252"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/nextflow/seqtk/seqtk_subseq/main.nf b/target/nextflow/seqtk/seqtk_subseq/main.nf
index 2e48148d..0a6bb83e 100644
--- a/target/nextflow/seqtk/seqtk_subseq/main.nf
+++ b/target/nextflow/seqtk/seqtk_subseq/main.nf
@@ -3060,9 +3060,9 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/seqtk/seqtk_subseq",
     "viash_version" : "0.9.0",
-    "git_commit" : "0a0edcacb5368517d249210022363bd9265f1bf5",
-    "git_remote" : "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox",
-    "git_tag" : "v0.2.0-8-g0a0edca"
+    "git_commit" : "add125261c6fa0ed7c9906fc85e7368d2072c4a3",
+    "git_remote" : "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox",
+    "git_tag" : "v0.2.0-9-gadd1252"
   },
   "package_config" : {
     "name" : "biobox",
diff --git a/target/nextflow/sortmerna/.config.vsh.yaml b/target/nextflow/sortmerna/.config.vsh.yaml
index e45f7ebf..06e9635f 100644
--- a/target/nextflow/sortmerna/.config.vsh.yaml
+++ b/target/nextflow/sortmerna/.config.vsh.yaml
@@ -591,9 +591,9 @@ build_info:
   output: "target/nextflow/sortmerna"
   executable: "target/nextflow/sortmerna/main.nf"
   viash_version: "0.9.0"
-  git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5"
-  git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-8-g0a0edca"
+  git_commit: "add125261c6fa0ed7c9906fc85e7368d2072c4a3"
+  git_remote: "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-9-gadd1252"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/nextflow/sortmerna/main.nf b/target/nextflow/sortmerna/main.nf
index 7306f778..a0a2642a 100644
--- a/target/nextflow/sortmerna/main.nf
+++ b/target/nextflow/sortmerna/main.nf
@@ -3456,9 +3456,9 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/sortmerna",
     "viash_version" : "0.9.0",
-    "git_commit" : "0a0edcacb5368517d249210022363bd9265f1bf5",
-    "git_remote" : "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox",
-    "git_tag" : "v0.2.0-8-g0a0edca"
+    "git_commit" : "add125261c6fa0ed7c9906fc85e7368d2072c4a3",
+    "git_remote" : "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox",
+    "git_tag" : "v0.2.0-9-gadd1252"
   },
   "package_config" : {
     "name" : "biobox",
diff --git a/target/nextflow/star/star_align_reads/.config.vsh.yaml b/target/nextflow/star/star_align_reads/.config.vsh.yaml
index 15ad8b1c..1b672bba 100644
--- a/target/nextflow/star/star_align_reads/.config.vsh.yaml
+++ b/target/nextflow/star/star_align_reads/.config.vsh.yaml
@@ -2663,9 +2663,9 @@ build_info:
   output: "target/nextflow/star/star_align_reads"
   executable: "target/nextflow/star/star_align_reads/main.nf"
   viash_version: "0.9.0"
-  git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5"
-  git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-8-g0a0edca"
+  git_commit: "add125261c6fa0ed7c9906fc85e7368d2072c4a3"
+  git_remote: "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-9-gadd1252"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/nextflow/star/star_align_reads/main.nf b/target/nextflow/star/star_align_reads/main.nf
index fb7cc097..62ec1abd 100644
--- a/target/nextflow/star/star_align_reads/main.nf
+++ b/target/nextflow/star/star_align_reads/main.nf
@@ -5943,9 +5943,9 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/star/star_align_reads",
     "viash_version" : "0.9.0",
-    "git_commit" : "0a0edcacb5368517d249210022363bd9265f1bf5",
-    "git_remote" : "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox",
-    "git_tag" : "v0.2.0-8-g0a0edca"
+    "git_commit" : "add125261c6fa0ed7c9906fc85e7368d2072c4a3",
+    "git_remote" : "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox",
+    "git_tag" : "v0.2.0-9-gadd1252"
   },
   "package_config" : {
     "name" : "biobox",
diff --git a/target/nextflow/star/star_genome_generate/.config.vsh.yaml b/target/nextflow/star/star_genome_generate/.config.vsh.yaml
index 06e8670e..89e955a2 100644
--- a/target/nextflow/star/star_genome_generate/.config.vsh.yaml
+++ b/target/nextflow/star/star_genome_generate/.config.vsh.yaml
@@ -333,9 +333,9 @@ build_info:
   output: "target/nextflow/star/star_genome_generate"
   executable: "target/nextflow/star/star_genome_generate/main.nf"
   viash_version: "0.9.0"
-  git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5"
-  git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-8-g0a0edca"
+  git_commit: "add125261c6fa0ed7c9906fc85e7368d2072c4a3"
+  git_remote: "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-9-gadd1252"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/nextflow/star/star_genome_generate/main.nf b/target/nextflow/star/star_genome_generate/main.nf
index 0da0c22f..9026a955 100644
--- a/target/nextflow/star/star_genome_generate/main.nf
+++ b/target/nextflow/star/star_genome_generate/main.nf
@@ -3195,9 +3195,9 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/star/star_genome_generate",
     "viash_version" : "0.9.0",
-    "git_commit" : "0a0edcacb5368517d249210022363bd9265f1bf5",
-    "git_remote" : "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox",
-    "git_tag" : "v0.2.0-8-g0a0edca"
+    "git_commit" : "add125261c6fa0ed7c9906fc85e7368d2072c4a3",
+    "git_remote" : "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox",
+    "git_tag" : "v0.2.0-9-gadd1252"
   },
   "package_config" : {
     "name" : "biobox",
diff --git a/target/nextflow/trimgalore/.config.vsh.yaml b/target/nextflow/trimgalore/.config.vsh.yaml
index 8c1d23ee..bad1ade5 100644
--- a/target/nextflow/trimgalore/.config.vsh.yaml
+++ b/target/nextflow/trimgalore/.config.vsh.yaml
@@ -770,9 +770,9 @@ build_info:
   output: "target/nextflow/trimgalore"
   executable: "target/nextflow/trimgalore/main.nf"
   viash_version: "0.9.0"
-  git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5"
-  git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-8-g0a0edca"
+  git_commit: "add125261c6fa0ed7c9906fc85e7368d2072c4a3"
+  git_remote: "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-9-gadd1252"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/nextflow/trimgalore/main.nf b/target/nextflow/trimgalore/main.nf
index 00c8ec07..4c5894de 100644
--- a/target/nextflow/trimgalore/main.nf
+++ b/target/nextflow/trimgalore/main.nf
@@ -3560,9 +3560,9 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/trimgalore",
     "viash_version" : "0.9.0",
-    "git_commit" : "0a0edcacb5368517d249210022363bd9265f1bf5",
-    "git_remote" : "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox",
-    "git_tag" : "v0.2.0-8-g0a0edca"
+    "git_commit" : "add125261c6fa0ed7c9906fc85e7368d2072c4a3",
+    "git_remote" : "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox",
+    "git_tag" : "v0.2.0-9-gadd1252"
   },
   "package_config" : {
     "name" : "biobox",
diff --git a/target/nextflow/umi_tools/umi_tools_dedup/.config.vsh.yaml b/target/nextflow/umi_tools/umi_tools_dedup/.config.vsh.yaml
index b132922b..61e17f1d 100644
--- a/target/nextflow/umi_tools/umi_tools_dedup/.config.vsh.yaml
+++ b/target/nextflow/umi_tools/umi_tools_dedup/.config.vsh.yaml
@@ -611,9 +611,9 @@ build_info:
   output: "target/nextflow/umi_tools/umi_tools_dedup"
   executable: "target/nextflow/umi_tools/umi_tools_dedup/main.nf"
   viash_version: "0.9.0"
-  git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5"
-  git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-8-g0a0edca"
+  git_commit: "add125261c6fa0ed7c9906fc85e7368d2072c4a3"
+  git_remote: "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-9-gadd1252"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/nextflow/umi_tools/umi_tools_dedup/main.nf b/target/nextflow/umi_tools/umi_tools_dedup/main.nf
index 824f9588..af804da3 100644
--- a/target/nextflow/umi_tools/umi_tools_dedup/main.nf
+++ b/target/nextflow/umi_tools/umi_tools_dedup/main.nf
@@ -3487,9 +3487,9 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/umi_tools/umi_tools_dedup",
     "viash_version" : "0.9.0",
-    "git_commit" : "0a0edcacb5368517d249210022363bd9265f1bf5",
-    "git_remote" : "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox",
-    "git_tag" : "v0.2.0-8-g0a0edca"
+    "git_commit" : "add125261c6fa0ed7c9906fc85e7368d2072c4a3",
+    "git_remote" : "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox",
+    "git_tag" : "v0.2.0-9-gadd1252"
   },
   "package_config" : {
     "name" : "biobox",
diff --git a/target/nextflow/umi_tools/umi_tools_extract/.config.vsh.yaml b/target/nextflow/umi_tools/umi_tools_extract/.config.vsh.yaml
index 61814f17..6e9775fc 100644
--- a/target/nextflow/umi_tools/umi_tools_extract/.config.vsh.yaml
+++ b/target/nextflow/umi_tools/umi_tools_extract/.config.vsh.yaml
@@ -449,9 +449,9 @@ build_info:
   output: "target/nextflow/umi_tools/umi_tools_extract"
   executable: "target/nextflow/umi_tools/umi_tools_extract/main.nf"
   viash_version: "0.9.0"
-  git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5"
-  git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-8-g0a0edca"
+  git_commit: "add125261c6fa0ed7c9906fc85e7368d2072c4a3"
+  git_remote: "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-9-gadd1252"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/nextflow/umi_tools/umi_tools_extract/main.nf b/target/nextflow/umi_tools/umi_tools_extract/main.nf
index 8631b4b1..09daa36e 100644
--- a/target/nextflow/umi_tools/umi_tools_extract/main.nf
+++ b/target/nextflow/umi_tools/umi_tools_extract/main.nf
@@ -3316,9 +3316,9 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/umi_tools/umi_tools_extract",
     "viash_version" : "0.9.0",
-    "git_commit" : "0a0edcacb5368517d249210022363bd9265f1bf5",
-    "git_remote" : "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox",
-    "git_tag" : "v0.2.0-8-g0a0edca"
+    "git_commit" : "add125261c6fa0ed7c9906fc85e7368d2072c4a3",
+    "git_remote" : "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox",
+    "git_tag" : "v0.2.0-9-gadd1252"
   },
   "package_config" : {
     "name" : "biobox",
diff --git a/target/nextflow/umi_tools/umi_tools_prepareforrsem/.config.vsh.yaml b/target/nextflow/umi_tools/umi_tools_prepareforrsem/.config.vsh.yaml
index 91b6a95e..a2961fc7 100644
--- a/target/nextflow/umi_tools/umi_tools_prepareforrsem/.config.vsh.yaml
+++ b/target/nextflow/umi_tools/umi_tools_prepareforrsem/.config.vsh.yaml
@@ -256,9 +256,9 @@ build_info:
   output: "target/nextflow/umi_tools/umi_tools_prepareforrsem"
   executable: "target/nextflow/umi_tools/umi_tools_prepareforrsem/main.nf"
   viash_version: "0.9.0"
-  git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5"
-  git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-8-g0a0edca"
+  git_commit: "add125261c6fa0ed7c9906fc85e7368d2072c4a3"
+  git_remote: "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-9-gadd1252"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/nextflow/umi_tools/umi_tools_prepareforrsem/main.nf b/target/nextflow/umi_tools/umi_tools_prepareforrsem/main.nf
index 6a10adf4..0035b6ae 100644
--- a/target/nextflow/umi_tools/umi_tools_prepareforrsem/main.nf
+++ b/target/nextflow/umi_tools/umi_tools_prepareforrsem/main.nf
@@ -3121,9 +3121,9 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/umi_tools/umi_tools_prepareforrsem",
     "viash_version" : "0.9.0",
-    "git_commit" : "0a0edcacb5368517d249210022363bd9265f1bf5",
-    "git_remote" : "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox",
-    "git_tag" : "v0.2.0-8-g0a0edca"
+    "git_commit" : "add125261c6fa0ed7c9906fc85e7368d2072c4a3",
+    "git_remote" : "https://x-access-token:ghs_bKg5UFS6ueiPm6KFjDzlVauquRQ8Fx1iMgnZ@github.com/viash-hub/biobox",
+    "git_tag" : "v0.2.0-9-gadd1252"
   },
   "package_config" : {
     "name" : "biobox",