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Build branch main with version main (7fb67a9)

Browse Source 
Build pipeline: viash-hub.biobox.main-zbkpz

Source commit: 7fb67a9853

Source message: Add bbmap_bbsplit (#138)

* initial commit dedup

* Revert "initial commit dedup"

This reverts commit 38f586bec0ac9e4312b016e29c3aa0bd53f292b2.

* initial commit, complete config file, add test data

* complete config file, adjusted script and tests, not functional

* update changelog, hep.txt, functional test, large test data

* smaller test data

* remove test resource from config

* modify paths in test script

* Arguments closer to original tool's

* Extra arg to allow use of bbmap args
This commit is contained in:
CI
2024-10-18 11:59:11 +00:00
parent 55de3a494d
commit 0cdbd262c7
275 changed files with 8020 additions and 726 deletions
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6
target/executable/bcftools/bcftools_annotate/.config.vsh.yaml
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@@ -469,9 +469,9 @@ build_info:
output: "target/executable/bcftools/bcftools_annotate"
executable: "target/executable/bcftools/bcftools_annotate/bcftools_annotate"
viash_version: "0.9.0"
git_commit: "86333c1a465db45facd936695f1f33b186ccf0fc"
git_remote: "https://x-access-token:ghs_ILHMFrZClEMTdFrL0nibETdAJotVbg0IPeJ7@github.com/viash-hub/biobox"
git_tag: "v0.2.0-10-g86333c1"
git_commit: "7fb67a98539868b9af788338fb5f46d34ab742f7"
git_remote: "https://x-access-token:ghs_lv5GvifOUhTQDSxrDFIWt5FoCBy00e2Tt6iO@github.com/viash-hub/biobox"
git_tag: "v0.2.0-11-g7fb67a9"
package_config:
name: "biobox"
version: "main"

4
target/executable/bcftools/bcftools_annotate/bcftools_annotate
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@@ -650,9 +650,9 @@ RUN echo "bcftools: \"$(bcftools --version | grep 'bcftools' | sed -n 's/^bcftoo
LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo"
LABEL org.opencontainers.image.description="Companion container for running component bcftools bcftools_annotate"
LABEL org.opencontainers.image.created="2024-10-16T08:57:43Z"
LABEL org.opencontainers.image.created="2024-10-18T09:18:48Z"
LABEL org.opencontainers.image.source="https://github.com/samtools/bcftools"
LABEL org.opencontainers.image.revision="86333c1a465db45facd936695f1f33b186ccf0fc"
LABEL org.opencontainers.image.revision="7fb67a98539868b9af788338fb5f46d34ab742f7"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

6
target/executable/bcftools/bcftools_concat/.config.vsh.yaml
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@@ -335,9 +335,9 @@ build_info:
output: "target/executable/bcftools/bcftools_concat"
executable: "target/executable/bcftools/bcftools_concat/bcftools_concat"
viash_version: "0.9.0"
git_commit: "86333c1a465db45facd936695f1f33b186ccf0fc"
git_remote: "https://x-access-token:ghs_ILHMFrZClEMTdFrL0nibETdAJotVbg0IPeJ7@github.com/viash-hub/biobox"
git_tag: "v0.2.0-10-g86333c1"
git_commit: "7fb67a98539868b9af788338fb5f46d34ab742f7"
git_remote: "https://x-access-token:ghs_lv5GvifOUhTQDSxrDFIWt5FoCBy00e2Tt6iO@github.com/viash-hub/biobox"
git_tag: "v0.2.0-11-g7fb67a9"
package_config:
name: "biobox"
version: "main"

4
target/executable/bcftools/bcftools_concat/bcftools_concat
View File

@@ -566,9 +566,9 @@ RUN echo "bcftools: \"$(bcftools --version | grep 'bcftools' | sed -n 's/^bcftoo
LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo"
LABEL org.opencontainers.image.description="Companion container for running component bcftools bcftools_concat"
LABEL org.opencontainers.image.created="2024-10-16T08:57:39Z"
LABEL org.opencontainers.image.created="2024-10-18T09:18:49Z"
LABEL org.opencontainers.image.source="https://github.com/samtools/bcftools"
LABEL org.opencontainers.image.revision="86333c1a465db45facd936695f1f33b186ccf0fc"
LABEL org.opencontainers.image.revision="7fb67a98539868b9af788338fb5f46d34ab742f7"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

6
target/executable/bcftools/bcftools_norm/.config.vsh.yaml
View File

@@ -416,9 +416,9 @@ build_info:
output: "target/executable/bcftools/bcftools_norm"
executable: "target/executable/bcftools/bcftools_norm/bcftools_norm"
viash_version: "0.9.0"
git_commit: "86333c1a465db45facd936695f1f33b186ccf0fc"
git_remote: "https://x-access-token:ghs_ILHMFrZClEMTdFrL0nibETdAJotVbg0IPeJ7@github.com/viash-hub/biobox"
git_tag: "v0.2.0-10-g86333c1"
git_commit: "7fb67a98539868b9af788338fb5f46d34ab742f7"
git_remote: "https://x-access-token:ghs_lv5GvifOUhTQDSxrDFIWt5FoCBy00e2Tt6iO@github.com/viash-hub/biobox"
git_tag: "v0.2.0-11-g7fb67a9"
package_config:
name: "biobox"
version: "main"

4
target/executable/bcftools/bcftools_norm/bcftools_norm
View File

@@ -589,9 +589,9 @@ RUN echo "bcftools: \"$(bcftools --version | grep 'bcftools' | sed -n 's/^bcftoo
LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo"
LABEL org.opencontainers.image.description="Companion container for running component bcftools bcftools_norm"
LABEL org.opencontainers.image.created="2024-10-16T08:57:40Z"
LABEL org.opencontainers.image.created="2024-10-18T09:18:49Z"
LABEL org.opencontainers.image.source="https://github.com/samtools/bcftools"
LABEL org.opencontainers.image.revision="86333c1a465db45facd936695f1f33b186ccf0fc"
LABEL org.opencontainers.image.revision="7fb67a98539868b9af788338fb5f46d34ab742f7"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

6
target/executable/bcftools/bcftools_sort/.config.vsh.yaml
View File

@@ -185,9 +185,9 @@ build_info:
output: "target/executable/bcftools/bcftools_sort"
executable: "target/executable/bcftools/bcftools_sort/bcftools_sort"
viash_version: "0.9.0"
git_commit: "86333c1a465db45facd936695f1f33b186ccf0fc"
git_remote: "https://x-access-token:ghs_ILHMFrZClEMTdFrL0nibETdAJotVbg0IPeJ7@github.com/viash-hub/biobox"
git_tag: "v0.2.0-10-g86333c1"
git_commit: "7fb67a98539868b9af788338fb5f46d34ab742f7"
git_remote: "https://x-access-token:ghs_lv5GvifOUhTQDSxrDFIWt5FoCBy00e2Tt6iO@github.com/viash-hub/biobox"
git_tag: "v0.2.0-11-g7fb67a9"
package_config:
name: "biobox"
version: "main"

4
target/executable/bcftools/bcftools_sort/bcftools_sort
View File

@@ -483,9 +483,9 @@ RUN echo "bcftools: \"$(bcftools --version | grep 'bcftools' | sed -n 's/^bcftoo
LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo"
LABEL org.opencontainers.image.description="Companion container for running component bcftools bcftools_sort"
LABEL org.opencontainers.image.created="2024-10-16T08:57:40Z"
LABEL org.opencontainers.image.created="2024-10-18T09:18:49Z"
LABEL org.opencontainers.image.source="https://github.com/samtools/bcftools"
LABEL org.opencontainers.image.revision="86333c1a465db45facd936695f1f33b186ccf0fc"
LABEL org.opencontainers.image.revision="7fb67a98539868b9af788338fb5f46d34ab742f7"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

6
target/executable/bcftools/bcftools_stats/.config.vsh.yaml
View File

@@ -458,9 +458,9 @@ build_info:
output: "target/executable/bcftools/bcftools_stats"
executable: "target/executable/bcftools/bcftools_stats/bcftools_stats"
viash_version: "0.9.0"
git_commit: "86333c1a465db45facd936695f1f33b186ccf0fc"
git_remote: "https://x-access-token:ghs_ILHMFrZClEMTdFrL0nibETdAJotVbg0IPeJ7@github.com/viash-hub/biobox"
git_tag: "v0.2.0-10-g86333c1"
git_commit: "7fb67a98539868b9af788338fb5f46d34ab742f7"
git_remote: "https://x-access-token:ghs_lv5GvifOUhTQDSxrDFIWt5FoCBy00e2Tt6iO@github.com/viash-hub/biobox"
git_tag: "v0.2.0-11-g7fb67a9"
package_config:
name: "biobox"
version: "main"

4
target/executable/bcftools/bcftools_stats/bcftools_stats
View File

@@ -626,9 +626,9 @@ RUN echo "bcftools: \"$(bcftools --version | grep 'bcftools' | sed -n 's/^bcftoo
LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo"
LABEL org.opencontainers.image.description="Companion container for running component bcftools bcftools_stats"
LABEL org.opencontainers.image.created="2024-10-16T08:57:43Z"
LABEL org.opencontainers.image.created="2024-10-18T09:18:48Z"
LABEL org.opencontainers.image.source="https://github.com/samtools/bcftools"
LABEL org.opencontainers.image.revision="86333c1a465db45facd936695f1f33b186ccf0fc"
LABEL org.opencontainers.image.revision="7fb67a98539868b9af788338fb5f46d34ab742f7"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER