vsh/biobox
1
0
Fork 0
Code Issues Pull Requests Actions Packages Projects Releases Wiki Activity

Build branch main with version main (7fb67a9)

Browse Source 
Build pipeline: viash-hub.biobox.main-zbkpz

Source commit: 7fb67a9853

Source message: Add bbmap_bbsplit (#138)

* initial commit dedup

* Revert "initial commit dedup"

This reverts commit 38f586bec0ac9e4312b016e29c3aa0bd53f292b2.

* initial commit, complete config file, add test data

* complete config file, adjusted script and tests, not functional

* update changelog, hep.txt, functional test, large test data

* smaller test data

* remove test resource from config

* modify paths in test script

* Arguments closer to original tool's

* Extra arg to allow use of bbmap args
This commit is contained in:
CI
2024-10-18 11:59:11 +00:00
parent 55de3a494d
commit 0cdbd262c7
275 changed files with 8020 additions and 726 deletions
Download Patch File Download Diff File Expand all files Collapse all files

6
target/executable/seqtk/seqtk_sample/.config.vsh.yaml
View File

@@ -173,9 +173,9 @@ build_info:
output: "target/executable/seqtk/seqtk_sample"
executable: "target/executable/seqtk/seqtk_sample/seqtk_sample"
viash_version: "0.9.0"
git_commit: "86333c1a465db45facd936695f1f33b186ccf0fc"
git_remote: "https://x-access-token:ghs_ILHMFrZClEMTdFrL0nibETdAJotVbg0IPeJ7@github.com/viash-hub/biobox"
git_tag: "v0.2.0-10-g86333c1"
git_commit: "7fb67a98539868b9af788338fb5f46d34ab742f7"
git_remote: "https://x-access-token:ghs_lv5GvifOUhTQDSxrDFIWt5FoCBy00e2Tt6iO@github.com/viash-hub/biobox"
git_tag: "v0.2.0-11-g7fb67a9"
package_config:
name: "biobox"
version: "main"

4
target/executable/seqtk/seqtk_sample/seqtk_sample
View File

@@ -481,9 +481,9 @@ FROM quay.io/biocontainers/seqtk:1.4--he4a0461_2
ENTRYPOINT []
LABEL org.opencontainers.image.authors="Jakub Majercik"
LABEL org.opencontainers.image.description="Companion container for running component seqtk seqtk_sample"
LABEL org.opencontainers.image.created="2024-10-16T08:57:46Z"
LABEL org.opencontainers.image.created="2024-10-18T09:18:58Z"
LABEL org.opencontainers.image.source="https://github.com/lh3/seqtk/tree/v1.4"
LABEL org.opencontainers.image.revision="86333c1a465db45facd936695f1f33b186ccf0fc"
LABEL org.opencontainers.image.revision="7fb67a98539868b9af788338fb5f46d34ab742f7"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER