Build branch main with version main (a13b57d)

Build pipeline: viash-hub.biobox.main-t7scl

Source commit: a13b57d04a

Source message: Add bases2fastq (#167)

target/executable/agat/agat_convert_bed2gff/.config.vsh.yaml

@@ -235,9 +235,9 @@ build_info:
   output: "target/executable/agat/agat_convert_bed2gff"
   executable: "target/executable/agat/agat_convert_bed2gff/agat_convert_bed2gff"
   viash_version: "0.9.0"
-  git_commit: "065297be5fb2d88020fc50e042bb3f49c9254ae9"
-  git_remote: "https://x-access-token:ghs_bGw8YykA469ibXe1g5GsidZ6N0n23m22jhvl@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-25-g065297b"
+  git_commit: "a13b57d04a3f3741eedd1af10fd96a9bee126f55"
+  git_remote: "https://x-access-token:ghs_xpDMoQpz4lF1RaGsMH4IlMbO48cLeW1cIYSF@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-26-ga13b57d"
 package_config:
   name: "biobox"
   version: "main"

target/executable/agat/agat_convert_bed2gff/agat_convert_bed2gff

@@ -515,9 +515,9 @@ RUN agat --version | sed 's/AGAT\s\(.*\)/agat: "\1"/' > /var/software_versions.t
 
 LABEL org.opencontainers.image.authors="Leïla Paquay"
 LABEL org.opencontainers.image.description="Companion container for running component agat agat_convert_bed2gff"
-LABEL org.opencontainers.image.created="2024-11-14T13:16:47Z"
+LABEL org.opencontainers.image.created="2024-11-26T14:03:12Z"
 LABEL org.opencontainers.image.source="https://github.com/NBISweden/AGAT"
-LABEL org.opencontainers.image.revision="065297be5fb2d88020fc50e042bb3f49c9254ae9"
+LABEL org.opencontainers.image.revision="a13b57d04a3f3741eedd1af10fd96a9bee126f55"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER

target/executable/agat/agat_convert_embl2gff/.config.vsh.yaml

@@ -225,9 +225,9 @@ build_info:
   output: "target/executable/agat/agat_convert_embl2gff"
   executable: "target/executable/agat/agat_convert_embl2gff/agat_convert_embl2gff"
   viash_version: "0.9.0"
-  git_commit: "065297be5fb2d88020fc50e042bb3f49c9254ae9"
-  git_remote: "https://x-access-token:ghs_bGw8YykA469ibXe1g5GsidZ6N0n23m22jhvl@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-25-g065297b"
+  git_commit: "a13b57d04a3f3741eedd1af10fd96a9bee126f55"
+  git_remote: "https://x-access-token:ghs_xpDMoQpz4lF1RaGsMH4IlMbO48cLeW1cIYSF@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-26-ga13b57d"
 package_config:
   name: "biobox"
   version: "main"

target/executable/agat/agat_convert_embl2gff/agat_convert_embl2gff

@@ -505,9 +505,9 @@ RUN agat --version | sed 's/AGAT\s\(.*\)/agat: "\1"/' > /var/software_versions.t
 
 LABEL org.opencontainers.image.authors="Leïla Paquay"
 LABEL org.opencontainers.image.description="Companion container for running component agat agat_convert_embl2gff"
-LABEL org.opencontainers.image.created="2024-11-14T13:16:49Z"
+LABEL org.opencontainers.image.created="2024-11-26T14:03:14Z"
 LABEL org.opencontainers.image.source="https://github.com/NBISweden/AGAT"
-LABEL org.opencontainers.image.revision="065297be5fb2d88020fc50e042bb3f49c9254ae9"
+LABEL org.opencontainers.image.revision="a13b57d04a3f3741eedd1af10fd96a9bee126f55"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER

target/executable/agat/agat_convert_genscan2gff/.config.vsh.yaml

@@ -230,9 +230,9 @@ build_info:
   output: "target/executable/agat/agat_convert_genscan2gff"
   executable: "target/executable/agat/agat_convert_genscan2gff/agat_convert_genscan2gff"
   viash_version: "0.9.0"
-  git_commit: "065297be5fb2d88020fc50e042bb3f49c9254ae9"
-  git_remote: "https://x-access-token:ghs_bGw8YykA469ibXe1g5GsidZ6N0n23m22jhvl@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-25-g065297b"
+  git_commit: "a13b57d04a3f3741eedd1af10fd96a9bee126f55"
+  git_remote: "https://x-access-token:ghs_xpDMoQpz4lF1RaGsMH4IlMbO48cLeW1cIYSF@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-26-ga13b57d"
 package_config:
   name: "biobox"
   version: "main"

target/executable/agat/agat_convert_genscan2gff/agat_convert_genscan2gff

@@ -514,9 +514,9 @@ RUN agat --version | sed 's/AGAT\s\(.*\)/agat: "\1"/' > /var/software_versions.t
 
 LABEL org.opencontainers.image.authors="Leïla Paquay"
 LABEL org.opencontainers.image.description="Companion container for running component agat agat_convert_genscan2gff"
-LABEL org.opencontainers.image.created="2024-11-14T13:16:50Z"
+LABEL org.opencontainers.image.created="2024-11-26T14:03:14Z"
 LABEL org.opencontainers.image.source="https://github.com/NBISweden/AGAT"
-LABEL org.opencontainers.image.revision="065297be5fb2d88020fc50e042bb3f49c9254ae9"
+LABEL org.opencontainers.image.revision="a13b57d04a3f3741eedd1af10fd96a9bee126f55"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER

target/executable/agat/agat_convert_mfannot2gff/.config.vsh.yaml

@@ -186,9 +186,9 @@ build_info:
   output: "target/executable/agat/agat_convert_mfannot2gff"
   executable: "target/executable/agat/agat_convert_mfannot2gff/agat_convert_mfannot2gff"
   viash_version: "0.9.0"
-  git_commit: "065297be5fb2d88020fc50e042bb3f49c9254ae9"
-  git_remote: "https://x-access-token:ghs_bGw8YykA469ibXe1g5GsidZ6N0n23m22jhvl@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-25-g065297b"
+  git_commit: "a13b57d04a3f3741eedd1af10fd96a9bee126f55"
+  git_remote: "https://x-access-token:ghs_xpDMoQpz4lF1RaGsMH4IlMbO48cLeW1cIYSF@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-26-ga13b57d"
 package_config:
   name: "biobox"
   version: "main"

target/executable/agat/agat_convert_mfannot2gff/agat_convert_mfannot2gff

@@ -480,9 +480,9 @@ RUN agat --version | sed 's/AGAT\s\(.*\)/agat: "\1"/' > /var/software_versions.t
 
 LABEL org.opencontainers.image.authors="Leïla Paquay"
 LABEL org.opencontainers.image.description="Companion container for running component agat agat_convert_mfannot2gff"
-LABEL org.opencontainers.image.created="2024-11-14T13:17:02Z"
+LABEL org.opencontainers.image.created="2024-11-26T14:03:25Z"
 LABEL org.opencontainers.image.source="https://github.com/NBISweden/AGAT"
-LABEL org.opencontainers.image.revision="065297be5fb2d88020fc50e042bb3f49c9254ae9"
+LABEL org.opencontainers.image.revision="a13b57d04a3f3741eedd1af10fd96a9bee126f55"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER

target/executable/agat/agat_convert_sp_gff2gtf/.config.vsh.yaml

@@ -228,9 +228,9 @@ build_info:
   output: "target/executable/agat/agat_convert_sp_gff2gtf"
   executable: "target/executable/agat/agat_convert_sp_gff2gtf/agat_convert_sp_gff2gtf"
   viash_version: "0.9.0"
-  git_commit: "065297be5fb2d88020fc50e042bb3f49c9254ae9"
-  git_remote: "https://x-access-token:ghs_bGw8YykA469ibXe1g5GsidZ6N0n23m22jhvl@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-25-g065297b"
+  git_commit: "a13b57d04a3f3741eedd1af10fd96a9bee126f55"
+  git_remote: "https://x-access-token:ghs_xpDMoQpz4lF1RaGsMH4IlMbO48cLeW1cIYSF@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-26-ga13b57d"
 package_config:
   name: "biobox"
   version: "main"

target/executable/agat/agat_convert_sp_gff2gtf/agat_convert_sp_gff2gtf

@@ -519,9 +519,9 @@ RUN agat --version | sed 's/AGAT\s\(.*\)/agat: "\1"/' > /var/software_versions.t
 
 LABEL org.opencontainers.image.authors="Leïla Paquay"
 LABEL org.opencontainers.image.description="Companion container for running component agat agat_convert_sp_gff2gtf"
-LABEL org.opencontainers.image.created="2024-11-14T13:16:47Z"
+LABEL org.opencontainers.image.created="2024-11-26T14:03:12Z"
 LABEL org.opencontainers.image.source="https://github.com/NBISweden/AGAT"
-LABEL org.opencontainers.image.revision="065297be5fb2d88020fc50e042bb3f49c9254ae9"
+LABEL org.opencontainers.image.revision="a13b57d04a3f3741eedd1af10fd96a9bee126f55"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER

target/executable/agat/agat_convert_sp_gff2tsv/.config.vsh.yaml

@@ -188,9 +188,9 @@ build_info:
   output: "target/executable/agat/agat_convert_sp_gff2tsv"
   executable: "target/executable/agat/agat_convert_sp_gff2tsv/agat_convert_sp_gff2tsv"
   viash_version: "0.9.0"
-  git_commit: "065297be5fb2d88020fc50e042bb3f49c9254ae9"
-  git_remote: "https://x-access-token:ghs_bGw8YykA469ibXe1g5GsidZ6N0n23m22jhvl@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-25-g065297b"
+  git_commit: "a13b57d04a3f3741eedd1af10fd96a9bee126f55"
+  git_remote: "https://x-access-token:ghs_xpDMoQpz4lF1RaGsMH4IlMbO48cLeW1cIYSF@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-26-ga13b57d"
 package_config:
   name: "biobox"
   version: "main"

target/executable/agat/agat_convert_sp_gff2tsv/agat_convert_sp_gff2tsv

@@ -484,9 +484,9 @@ RUN agat --version | sed 's/AGAT\s\(.*\)/agat: "\1"/' > /var/software_versions.t
 
 LABEL org.opencontainers.image.authors="Leïla Paquay"
 LABEL org.opencontainers.image.description="Companion container for running component agat agat_convert_sp_gff2tsv"
-LABEL org.opencontainers.image.created="2024-11-14T13:16:48Z"
+LABEL org.opencontainers.image.created="2024-11-26T14:03:13Z"
 LABEL org.opencontainers.image.source="https://github.com/NBISweden/AGAT"
-LABEL org.opencontainers.image.revision="065297be5fb2d88020fc50e042bb3f49c9254ae9"
+LABEL org.opencontainers.image.revision="a13b57d04a3f3741eedd1af10fd96a9bee126f55"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER

target/executable/agat/agat_convert_sp_gxf2gxf/.config.vsh.yaml

@@ -195,9 +195,9 @@ build_info:
   output: "target/executable/agat/agat_convert_sp_gxf2gxf"
   executable: "target/executable/agat/agat_convert_sp_gxf2gxf/agat_convert_sp_gxf2gxf"
   viash_version: "0.9.0"
-  git_commit: "065297be5fb2d88020fc50e042bb3f49c9254ae9"
-  git_remote: "https://x-access-token:ghs_bGw8YykA469ibXe1g5GsidZ6N0n23m22jhvl@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-25-g065297b"
+  git_commit: "a13b57d04a3f3741eedd1af10fd96a9bee126f55"
+  git_remote: "https://x-access-token:ghs_xpDMoQpz4lF1RaGsMH4IlMbO48cLeW1cIYSF@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-26-ga13b57d"
 package_config:
   name: "biobox"
   version: "main"

target/executable/agat/agat_convert_sp_gxf2gxf/agat_convert_sp_gxf2gxf

@@ -493,9 +493,9 @@ RUN agat --version | sed 's/AGAT\s\(.*\)/agat: "\1"/' > /var/software_versions.t
 
 LABEL org.opencontainers.image.authors="Leïla Paquay"
 LABEL org.opencontainers.image.description="Companion container for running component agat agat_convert_sp_gxf2gxf"
-LABEL org.opencontainers.image.created="2024-11-14T13:16:46Z"
+LABEL org.opencontainers.image.created="2024-11-26T14:03:25Z"
 LABEL org.opencontainers.image.source="https://github.com/NBISweden/AGAT"
-LABEL org.opencontainers.image.revision="065297be5fb2d88020fc50e042bb3f49c9254ae9"
+LABEL org.opencontainers.image.revision="a13b57d04a3f3741eedd1af10fd96a9bee126f55"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER

target/executable/agat/agat_sp_add_introns/.config.vsh.yaml

@@ -186,9 +186,9 @@ build_info:
   output: "target/executable/agat/agat_sp_add_introns"
   executable: "target/executable/agat/agat_sp_add_introns/agat_sp_add_introns"
   viash_version: "0.9.0"
-  git_commit: "065297be5fb2d88020fc50e042bb3f49c9254ae9"
-  git_remote: "https://x-access-token:ghs_bGw8YykA469ibXe1g5GsidZ6N0n23m22jhvl@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-25-g065297b"
+  git_commit: "a13b57d04a3f3741eedd1af10fd96a9bee126f55"
+  git_remote: "https://x-access-token:ghs_xpDMoQpz4lF1RaGsMH4IlMbO48cLeW1cIYSF@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-26-ga13b57d"
 package_config:
   name: "biobox"
   version: "main"

target/executable/agat/agat_sp_add_introns/agat_sp_add_introns

@@ -479,9 +479,9 @@ RUN agat --version | sed 's/AGAT\s\(.*\)/agat: "\1"/' > /var/software_versions.t
 
 LABEL org.opencontainers.image.authors="Leïla Paquay"
 LABEL org.opencontainers.image.description="Companion container for running component agat agat_sp_add_introns"
-LABEL org.opencontainers.image.created="2024-11-14T13:16:48Z"
+LABEL org.opencontainers.image.created="2024-11-26T14:03:12Z"
 LABEL org.opencontainers.image.source="https://github.com/NBISweden/AGAT"
-LABEL org.opencontainers.image.revision="065297be5fb2d88020fc50e042bb3f49c9254ae9"
+LABEL org.opencontainers.image.revision="a13b57d04a3f3741eedd1af10fd96a9bee126f55"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER

target/executable/agat/agat_sp_filter_feature_from_kill_list/.config.vsh.yaml

@@ -236,9 +236,9 @@ build_info:
   output: "target/executable/agat/agat_sp_filter_feature_from_kill_list"
   executable: "target/executable/agat/agat_sp_filter_feature_from_kill_list/agat_sp_filter_feature_from_kill_list"
   viash_version: "0.9.0"
-  git_commit: "065297be5fb2d88020fc50e042bb3f49c9254ae9"
-  git_remote: "https://x-access-token:ghs_bGw8YykA469ibXe1g5GsidZ6N0n23m22jhvl@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-25-g065297b"
+  git_commit: "a13b57d04a3f3741eedd1af10fd96a9bee126f55"
+  git_remote: "https://x-access-token:ghs_xpDMoQpz4lF1RaGsMH4IlMbO48cLeW1cIYSF@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-26-ga13b57d"
 package_config:
   name: "biobox"
   version: "main"

target/executable/agat/agat_sp_filter_feature_from_kill_list/agat_sp_filter_feature_from_kill_list

@@ -517,9 +517,9 @@ RUN agat --version | sed 's/AGAT\s\(.*\)/agat: "\1"/' > /var/software_versions.t
 
 LABEL org.opencontainers.image.authors="Leïla Paquay"
 LABEL org.opencontainers.image.description="Companion container for running component agat agat_sp_filter_feature_from_kill_list"
-LABEL org.opencontainers.image.created="2024-11-14T13:16:49Z"
+LABEL org.opencontainers.image.created="2024-11-26T14:03:14Z"
 LABEL org.opencontainers.image.source="https://github.com/NBISweden/AGAT"
-LABEL org.opencontainers.image.revision="065297be5fb2d88020fc50e042bb3f49c9254ae9"
+LABEL org.opencontainers.image.revision="a13b57d04a3f3741eedd1af10fd96a9bee126f55"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER

target/executable/agat/agat_sp_merge_annotations/.config.vsh.yaml

@@ -184,9 +184,9 @@ build_info:
   output: "target/executable/agat/agat_sp_merge_annotations"
   executable: "target/executable/agat/agat_sp_merge_annotations/agat_sp_merge_annotations"
   viash_version: "0.9.0"
-  git_commit: "065297be5fb2d88020fc50e042bb3f49c9254ae9"
-  git_remote: "https://x-access-token:ghs_bGw8YykA469ibXe1g5GsidZ6N0n23m22jhvl@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-25-g065297b"
+  git_commit: "a13b57d04a3f3741eedd1af10fd96a9bee126f55"
+  git_remote: "https://x-access-token:ghs_xpDMoQpz4lF1RaGsMH4IlMbO48cLeW1cIYSF@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-26-ga13b57d"
 package_config:
   name: "biobox"
   version: "main"

target/executable/agat/agat_sp_merge_annotations/agat_sp_merge_annotations

@@ -482,9 +482,9 @@ RUN agat --version | sed 's/AGAT\s\(.*\)/agat: "\1"/' > /var/software_versions.t
 
 LABEL org.opencontainers.image.authors="Leïla Paquay"
 LABEL org.opencontainers.image.description="Companion container for running component agat agat_sp_merge_annotations"
-LABEL org.opencontainers.image.created="2024-11-14T13:16:49Z"
+LABEL org.opencontainers.image.created="2024-11-26T14:03:13Z"
 LABEL org.opencontainers.image.source="https://github.com/NBISweden/AGAT"
-LABEL org.opencontainers.image.revision="065297be5fb2d88020fc50e042bb3f49c9254ae9"
+LABEL org.opencontainers.image.revision="a13b57d04a3f3741eedd1af10fd96a9bee126f55"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER

target/executable/agat/agat_sp_statistics/.config.vsh.yaml

@@ -231,9 +231,9 @@ build_info:
   output: "target/executable/agat/agat_sp_statistics"
   executable: "target/executable/agat/agat_sp_statistics/agat_sp_statistics"
   viash_version: "0.9.0"
-  git_commit: "065297be5fb2d88020fc50e042bb3f49c9254ae9"
-  git_remote: "https://x-access-token:ghs_bGw8YykA469ibXe1g5GsidZ6N0n23m22jhvl@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-25-g065297b"
+  git_commit: "a13b57d04a3f3741eedd1af10fd96a9bee126f55"
+  git_remote: "https://x-access-token:ghs_xpDMoQpz4lF1RaGsMH4IlMbO48cLeW1cIYSF@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-26-ga13b57d"
 package_config:
   name: "biobox"
   version: "main"

target/executable/agat/agat_sp_statistics/agat_sp_statistics

@@ -507,9 +507,9 @@ RUN agat --version | sed 's/.*v\.//; s/\s.*//' | sed 's/^/AGAT: /' > /var/softwa
 
 LABEL org.opencontainers.image.authors="Leïla Paquay"
 LABEL org.opencontainers.image.description="Companion container for running component agat agat_sp_statistics"
-LABEL org.opencontainers.image.created="2024-11-14T13:16:48Z"
+LABEL org.opencontainers.image.created="2024-11-26T14:03:13Z"
 LABEL org.opencontainers.image.source="https://github.com/NBISweden/AGAT"
-LABEL org.opencontainers.image.revision="065297be5fb2d88020fc50e042bb3f49c9254ae9"
+LABEL org.opencontainers.image.revision="a13b57d04a3f3741eedd1af10fd96a9bee126f55"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER

target/executable/agat/agat_sq_stat_basic/.config.vsh.yaml

@@ -227,9 +227,9 @@ build_info:
   output: "target/executable/agat/agat_sq_stat_basic"
   executable: "target/executable/agat/agat_sq_stat_basic/agat_sq_stat_basic"
   viash_version: "0.9.0"
-  git_commit: "065297be5fb2d88020fc50e042bb3f49c9254ae9"
-  git_remote: "https://x-access-token:ghs_bGw8YykA469ibXe1g5GsidZ6N0n23m22jhvl@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-25-g065297b"
+  git_commit: "a13b57d04a3f3741eedd1af10fd96a9bee126f55"
+  git_remote: "https://x-access-token:ghs_xpDMoQpz4lF1RaGsMH4IlMbO48cLeW1cIYSF@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-26-ga13b57d"
 package_config:
   name: "biobox"
   version: "main"

target/executable/agat/agat_sq_stat_basic/agat_sq_stat_basic

@@ -507,9 +507,9 @@ RUN agat --version | sed 's/AGAT\s\(.*\)/agat: "\1"/' > /var/software_versions.t
 
 LABEL org.opencontainers.image.authors="Leïla Paquay"
 LABEL org.opencontainers.image.description="Companion container for running component agat agat_sq_stat_basic"
-LABEL org.opencontainers.image.created="2024-11-14T13:17:02Z"
+LABEL org.opencontainers.image.created="2024-11-26T14:03:25Z"
 LABEL org.opencontainers.image.source="https://github.com/NBISweden/AGAT"
-LABEL org.opencontainers.image.revision="065297be5fb2d88020fc50e042bb3f49c9254ae9"
+LABEL org.opencontainers.image.revision="a13b57d04a3f3741eedd1af10fd96a9bee126f55"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER

target/executable/arriba/.config.vsh.yaml

@@ -706,9 +706,9 @@ build_info:
   output: "target/executable/arriba"
   executable: "target/executable/arriba/arriba"
   viash_version: "0.9.0"
-  git_commit: "065297be5fb2d88020fc50e042bb3f49c9254ae9"
-  git_remote: "https://x-access-token:ghs_bGw8YykA469ibXe1g5GsidZ6N0n23m22jhvl@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-25-g065297b"
+  git_commit: "a13b57d04a3f3741eedd1af10fd96a9bee126f55"
+  git_remote: "https://x-access-token:ghs_xpDMoQpz4lF1RaGsMH4IlMbO48cLeW1cIYSF@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-26-ga13b57d"
 package_config:
   name: "biobox"
   version: "main"

target/executable/arriba/arriba

@@ -754,9 +754,9 @@ RUN arriba -h | grep 'Version:' 2>&1 |  sed 's/Version:\s\(.*\)/arriba: "\1"/' >
 
 LABEL org.opencontainers.image.authors="Robrecht Cannoodt"
 LABEL org.opencontainers.image.description="Companion container for running component arriba"
-LABEL org.opencontainers.image.created="2024-11-14T13:16:51Z"
+LABEL org.opencontainers.image.created="2024-11-26T14:03:15Z"
 LABEL org.opencontainers.image.source="https://github.com/suhrig/arriba"
-LABEL org.opencontainers.image.revision="065297be5fb2d88020fc50e042bb3f49c9254ae9"
+LABEL org.opencontainers.image.revision="a13b57d04a3f3741eedd1af10fd96a9bee126f55"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER

target/executable/bases2fastq/.config.vsh.yaml

@@ -0,0 +1,421 @@
+name: "bases2fastq"
+version: "main"
+authors:
+- name: "Dries Schaumont"
+  roles:
+  - "author"
+  - "maintainer"
+  info:
+    links:
+      email: "dries@data-intuitive.com"
+      github: "DriesSchaumont"
+      orcid: "0000-0002-4389-0440"
+      linkedin: "dries-schaumont"
+    organizations:
+    - name: "Data Intuitive"
+      href: "https://www.data-intuitive.com"
+      role: "Data Scientist"
+argument_groups:
+- name: "Input"
+  arguments:
+  - type: "file"
+    name: "--analysis_directory"
+    description: "Location of analysis directory"
+    info: null
+    example:
+    - "input"
+    must_exist: true
+    create_parent: true
+    required: true
+    direction: "input"
+    multiple: false
+    multiple_sep: ";"
+  - type: "file"
+    name: "--run_manifest"
+    alternatives:
+    - "-r"
+    description: "Location of run manifest to use instead of default RunManifest.csv\
+      \ found in analysis directory"
+    info: null
+    must_exist: true
+    create_parent: true
+    required: false
+    direction: "input"
+    multiple: false
+    multiple_sep: ";"
+- name: "Output"
+  arguments:
+  - type: "file"
+    name: "--output_directory"
+    alternatives:
+    - "-o"
+    description: "Location to save output fastqs"
+    info: null
+    example:
+    - "fastq_dir"
+    must_exist: true
+    create_parent: true
+    required: true
+    direction: "output"
+    multiple: false
+    multiple_sep: ";"
+  - type: "file"
+    name: "--report"
+    description: "Output location for the HTML report"
+    info: null
+    must_exist: true
+    create_parent: true
+    required: false
+    direction: "output"
+    multiple: false
+    multiple_sep: ";"
+  - type: "file"
+    name: "--logs"
+    description: "Directory containing log files"
+    info: null
+    example:
+    - "logs_dir"
+    must_exist: true
+    create_parent: true
+    required: false
+    direction: "output"
+    multiple: false
+    multiple_sep: ";"
+- name: "Arguments"
+  arguments:
+  - type: "string"
+    name: "--chemistry_version"
+    description: "Run parameters override, chemistry version."
+    info: null
+    required: false
+    direction: "input"
+    multiple: false
+    multiple_sep: ";"
+  - type: "boolean_true"
+    name: "--demux_only"
+    alternatives:
+    - "-d"
+    description: "Generate demux files and indexing stats without generating FASTQ\n"
+    info: null
+    direction: "input"
+  - type: "boolean_true"
+    name: "--detect_adapters"
+    description: "Detect adapters sequences, overriding any sequences present in run\
+      \ manifest.\n"
+    info: null
+    direction: "input"
+  - type: "boolean_true"
+    name: "--error_on_missing"
+    description: "Terminate execution for a missing file (by default, missing files\
+      \ are\nskipped and execution continues). Also set by --strict.\n"
+    info: null
+    direction: "input"
+  - type: "string"
+    name: "--exclude_tile"
+    alternatives:
+    - "-e"
+    description: "Regex matching tile names to exclude. This flag can be specified\
+      \ multiple times. (e.g. L1.*C0[23]S.)\n"
+    info: null
+    required: false
+    direction: "input"
+    multiple: true
+    multiple_sep: ";"
+  - type: "string"
+    name: "--filter_mask"
+    description: "Run parameters override, custom pass filter mask.\n"
+    info: null
+    required: false
+    direction: "input"
+    multiple: false
+    multiple_sep: ";"
+  - type: "string"
+    name: "--flowcell_id"
+    description: "Run parameters override, flowcell ID.\n"
+    info: null
+    required: false
+    direction: "input"
+    multiple: false
+    multiple_sep: ";"
+  - type: "boolean_true"
+    name: "--force_index_orientation"
+    description: "Do not attempt to find orientation for I1/I2 reads (reverse complement).\n\
+      Use orientation given in run manifest.\n"
+    info: null
+    direction: "input"
+  - type: "boolean_true"
+    name: "--group_fastq"
+    description: "Group all FASTQ/stats/metrics for a project are in the project folder.\n"
+    info: null
+    direction: "input"
+  - type: "integer"
+    name: "--i1_cycles"
+    description: "Run parameters override, I1 cycles.\n"
+    info: null
+    required: false
+    min: 1
+    direction: "input"
+    multiple: false
+    multiple_sep: ";"
+  - type: "integer"
+    name: "--i2_cycles"
+    description: "Run parameters override, I2 cycles\n"
+    info: null
+    required: false
+    min: 1
+    direction: "input"
+    multiple: false
+    multiple_sep: ";"
+  - type: "string"
+    name: "--include_tile"
+    alternatives:
+    - "-i"
+    description: "Regex matching tile names to include. This flag\ncan be specified\
+      \ multiple times. (e.g. L1.*C0[23]S.)\n"
+    info: null
+    required: false
+    direction: "input"
+    multiple: true
+    multiple_sep: ";"
+  - type: "string"
+    name: "--kit_configuration"
+    description: "Run parameters override, kit configuration.\n"
+    info: null
+    required: false
+    direction: "input"
+    multiple: false
+    multiple_sep: ";"
+  - type: "boolean_true"
+    name: "--legacy_fastq"
+    description: "Legacy naming for FASTQ files (e.g. SampleName_S1_L001_R1_001.fastq.gz)\n"
+    info: null
+    direction: "input"
+  - type: "string"
+    name: "--log_level"
+    alternatives:
+    - "-l"
+    description: "Severity level for logging.\n"
+    info: null
+    example:
+    - "INFO"
+    required: false
+    choices:
+    - "DEBUG"
+    - "INFO"
+    - "WARNING"
+    - "ERROR"
+    direction: "input"
+    multiple: false
+    multiple_sep: ";"
+  - type: "boolean_true"
+    name: "--no_error_on_invalid"
+    description: "Skip invalid files and continue execution. Overridden by --strict\
+      \ options\n"
+    info: null
+    direction: "input"
+  - type: "boolean_true"
+    name: "--no_projects"
+    description: "Disable project directories\n"
+    info: null
+    direction: "input"
+  - type: "integer"
+    name: "--num_unassigned"
+    description: "Max Number of unassigned sequences to report.\n"
+    info: null
+    example:
+    - 30
+    required: false
+    min: 0
+    max: 1000
+    direction: "input"
+    multiple: false
+    multiple_sep: ";"
+  - type: "string"
+    name: "--preparation_workflow"
+    description: "Run parameters override, preparation workflow. \n"
+    info: null
+    required: false
+    direction: "input"
+    multiple: false
+    multiple_sep: ";"
+  - type: "boolean_true"
+    name: "--qc_only"
+    description: "Quickly generate run stats for single tile without generating FASTQ.\n\
+      Use --include_tile/--exclude_tile to define custom tile set.\n"
+    info: null
+    direction: "input"
+  - type: "integer"
+    name: "--r1_cycles"
+    description: "Run parameters override, R1 cycles.\n"
+    info: null
+    required: false
+    min: 1
+    direction: "input"
+    multiple: false
+    multiple_sep: ";"
+  - type: "integer"
+    name: "--r2_cycles"
+    description: "Run parameters override, R2 cycles.\n"
+    info: null
+    required: false
+    min: 1
+    direction: "input"
+    multiple: false
+    multiple_sep: ";"
+  - type: "boolean_true"
+    name: "--split_lanes"
+    description: "Split FASTQ files by lane.\n"
+    info: null
+    direction: "input"
+  - type: "boolean_true"
+    name: "--strict"
+    description: "In strict mode any invalid or missing input file will terminate\
+      \ execution \n(overrides no_error_on_invalid and sets --error_on_missing)\n"
+    info: null
+    direction: "input"
+resources:
+- type: "bash_script"
+  path: "script.sh"
+  is_executable: true
+description: "Bases2Fastq demultiplexes sequencing data generated by Element Biosciences\
+  \ instruments and converts base calls into FASTQ files.\n"
+test_resources:
+- type: "bash_script"
+  path: "test.sh"
+  is_executable: true
+info: null
+status: "enabled"
+requirements:
+  commands:
+  - "ps"
+keywords:
+- "demultiplex"
+- "fastq"
+- "demux"
+- "Element Biosciences"
+license: "Proprietairy"
+links:
+  repository: "https://github.com/viash-hub/biobox"
+  documentation: "https://docs.elembio.io/docs/bases2fastq/introduction/"
+runners:
+- type: "executable"
+  id: "executable"
+  docker_setup_strategy: "ifneedbepullelsecachedbuild"
+- type: "nextflow"
+  id: "nextflow"
+  directives:
+    tag: "$id"
+  auto:
+    simplifyInput: true
+    simplifyOutput: false
+    transcript: false
+    publish: false
+  config:
+    labels:
+      mem1gb: "memory = 1000000000.B"
+      mem2gb: "memory = 2000000000.B"
+      mem5gb: "memory = 5000000000.B"
+      mem10gb: "memory = 10000000000.B"
+      mem20gb: "memory = 20000000000.B"
+      mem50gb: "memory = 50000000000.B"
+      mem100gb: "memory = 100000000000.B"
+      mem200gb: "memory = 200000000000.B"
+      mem500gb: "memory = 500000000000.B"
+      mem1tb: "memory = 1000000000000.B"
+      mem2tb: "memory = 2000000000000.B"
+      mem5tb: "memory = 5000000000000.B"
+      mem10tb: "memory = 10000000000000.B"
+      mem20tb: "memory = 20000000000000.B"
+      mem50tb: "memory = 50000000000000.B"
+      mem100tb: "memory = 100000000000000.B"
+      mem200tb: "memory = 200000000000000.B"
+      mem500tb: "memory = 500000000000000.B"
+      mem1gib: "memory = 1073741824.B"
+      mem2gib: "memory = 2147483648.B"
+      mem4gib: "memory = 4294967296.B"
+      mem8gib: "memory = 8589934592.B"
+      mem16gib: "memory = 17179869184.B"
+      mem32gib: "memory = 34359738368.B"
+      mem64gib: "memory = 68719476736.B"
+      mem128gib: "memory = 137438953472.B"
+      mem256gib: "memory = 274877906944.B"
+      mem512gib: "memory = 549755813888.B"
+      mem1tib: "memory = 1099511627776.B"
+      mem2tib: "memory = 2199023255552.B"
+      mem4tib: "memory = 4398046511104.B"
+      mem8tib: "memory = 8796093022208.B"
+      mem16tib: "memory = 17592186044416.B"
+      mem32tib: "memory = 35184372088832.B"
+      mem64tib: "memory = 70368744177664.B"
+      mem128tib: "memory = 140737488355328.B"
+      mem256tib: "memory = 281474976710656.B"
+      mem512tib: "memory = 562949953421312.B"
+      cpu1: "cpus = 1"
+      cpu2: "cpus = 2"
+      cpu5: "cpus = 5"
+      cpu10: "cpus = 10"
+      cpu20: "cpus = 20"
+      cpu50: "cpus = 50"
+      cpu100: "cpus = 100"
+      cpu200: "cpus = 200"
+      cpu500: "cpus = 500"
+      cpu1000: "cpus = 1000"
+  debug: false
+  container: "docker"
+engines:
+- type: "docker"
+  id: "docker"
+  image: "elembio/bases2fastq:2.1.0"
+  target_registry: "images.viash-hub.com"
+  target_tag: "main"
+  namespace_separator: "/"
+  setup:
+  - type: "apt"
+    packages:
+    - "procps"
+    - "tree"
+    interactive: false
+  - type: "docker"
+    run:
+    - "echo \"bases2fastq: $(bases2fastq --version | cut -d' ' -f3)\" > /var/software_versions.txt\n"
+  test_setup:
+  - type: "apt"
+    packages:
+    - "curl"
+    interactive: false
+  entrypoint: []
+  cmd: null
+- type: "native"
+  id: "native"
+build_info:
+  config: "src/bases2fastq/config.vsh.yaml"
+  runner: "executable"
+  engine: "docker|native"
+  output: "target/executable/bases2fastq"
+  executable: "target/executable/bases2fastq/bases2fastq"
+  viash_version: "0.9.0"
+  git_commit: "a13b57d04a3f3741eedd1af10fd96a9bee126f55"
+  git_remote: "https://x-access-token:ghs_xpDMoQpz4lF1RaGsMH4IlMbO48cLeW1cIYSF@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-26-ga13b57d"
+package_config:
+  name: "biobox"
+  version: "main"
+  description: "A collection of bioinformatics tools for working with sequence data.\n"
+  info: null
+  viash_version: "0.9.0"
+  source: "src"
+  target: "target"
+  config_mods:
+  - ".requirements.commands := ['ps']\n"
+  - ".engines += { type: \"native\" }"
+  - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
+  - ".engines[.type == 'docker'].target_tag := 'main'"
+  keywords:
+  - "bioinformatics"
+  - "modules"
+  - "sequencing"
+  license: "MIT"
+  organization: "vsh"
+  links:
+    repository: "https://github.com/viash-hub/biobox"
+    issue_tracker: "https://github.com/viash-hub/biobox/issues"

target/executable/bbmap/bbmap_bbsplit/.config.vsh.yaml

@@ -368,9 +368,9 @@ build_info:
   output: "target/executable/bbmap/bbmap_bbsplit"
   executable: "target/executable/bbmap/bbmap_bbsplit/bbmap_bbsplit"
   viash_version: "0.9.0"
-  git_commit: "065297be5fb2d88020fc50e042bb3f49c9254ae9"
-  git_remote: "https://x-access-token:ghs_bGw8YykA469ibXe1g5GsidZ6N0n23m22jhvl@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-25-g065297b"
+  git_commit: "a13b57d04a3f3741eedd1af10fd96a9bee126f55"
+  git_remote: "https://x-access-token:ghs_xpDMoQpz4lF1RaGsMH4IlMbO48cLeW1cIYSF@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-26-ga13b57d"
 package_config:
   name: "biobox"
   version: "main"

target/executable/bbmap/bbmap_bbsplit/bbmap_bbsplit

@@ -600,9 +600,9 @@ cp -r bbmap/* /usr/local/bin
 RUN bbsplit.sh --version 2>&1 | awk '/BBMap version/{print "BBMAP:", $NF}' > /var/software_versions.txt
 
 LABEL org.opencontainers.image.description="Companion container for running component bbmap bbmap_bbsplit"
-LABEL org.opencontainers.image.created="2024-11-14T13:16:51Z"
+LABEL org.opencontainers.image.created="2024-11-26T14:03:15Z"
 LABEL org.opencontainers.image.source="https://github.com/BioInfoTools/BBMap/blob/master/sh/bbsplit.sh"
-LABEL org.opencontainers.image.revision="065297be5fb2d88020fc50e042bb3f49c9254ae9"
+LABEL org.opencontainers.image.revision="a13b57d04a3f3741eedd1af10fd96a9bee126f55"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER

target/executable/bcftools/bcftools_annotate/.config.vsh.yaml

@@ -469,9 +469,9 @@ build_info:
   output: "target/executable/bcftools/bcftools_annotate"
   executable: "target/executable/bcftools/bcftools_annotate/bcftools_annotate"
   viash_version: "0.9.0"
-  git_commit: "065297be5fb2d88020fc50e042bb3f49c9254ae9"
-  git_remote: "https://x-access-token:ghs_bGw8YykA469ibXe1g5GsidZ6N0n23m22jhvl@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-25-g065297b"
+  git_commit: "a13b57d04a3f3741eedd1af10fd96a9bee126f55"
+  git_remote: "https://x-access-token:ghs_xpDMoQpz4lF1RaGsMH4IlMbO48cLeW1cIYSF@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-26-ga13b57d"
 package_config:
   name: "biobox"
   version: "main"

target/executable/bcftools/bcftools_annotate/bcftools_annotate

@@ -650,9 +650,9 @@ RUN echo "bcftools: \"$(bcftools --version | grep 'bcftools' | sed -n 's/^bcftoo
 
 LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo"
 LABEL org.opencontainers.image.description="Companion container for running component bcftools bcftools_annotate"
-LABEL org.opencontainers.image.created="2024-11-14T13:17:00Z"
+LABEL org.opencontainers.image.created="2024-11-26T14:03:23Z"
 LABEL org.opencontainers.image.source="https://github.com/samtools/bcftools"
-LABEL org.opencontainers.image.revision="065297be5fb2d88020fc50e042bb3f49c9254ae9"
+LABEL org.opencontainers.image.revision="a13b57d04a3f3741eedd1af10fd96a9bee126f55"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER

target/executable/bcftools/bcftools_concat/.config.vsh.yaml

@@ -335,9 +335,9 @@ build_info:
   output: "target/executable/bcftools/bcftools_concat"
   executable: "target/executable/bcftools/bcftools_concat/bcftools_concat"
   viash_version: "0.9.0"
-  git_commit: "065297be5fb2d88020fc50e042bb3f49c9254ae9"
-  git_remote: "https://x-access-token:ghs_bGw8YykA469ibXe1g5GsidZ6N0n23m22jhvl@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-25-g065297b"
+  git_commit: "a13b57d04a3f3741eedd1af10fd96a9bee126f55"
+  git_remote: "https://x-access-token:ghs_xpDMoQpz4lF1RaGsMH4IlMbO48cLeW1cIYSF@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-26-ga13b57d"
 package_config:
   name: "biobox"
   version: "main"

target/executable/bcftools/bcftools_concat/bcftools_concat

@@ -566,9 +566,9 @@ RUN echo "bcftools: \"$(bcftools --version | grep 'bcftools' | sed -n 's/^bcftoo
 
 LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo"
 LABEL org.opencontainers.image.description="Companion container for running component bcftools bcftools_concat"
-LABEL org.opencontainers.image.created="2024-11-14T13:16:59Z"
+LABEL org.opencontainers.image.created="2024-11-26T14:03:22Z"
 LABEL org.opencontainers.image.source="https://github.com/samtools/bcftools"
-LABEL org.opencontainers.image.revision="065297be5fb2d88020fc50e042bb3f49c9254ae9"
+LABEL org.opencontainers.image.revision="a13b57d04a3f3741eedd1af10fd96a9bee126f55"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER

target/executable/bcftools/bcftools_norm/.config.vsh.yaml

@@ -416,9 +416,9 @@ build_info:
   output: "target/executable/bcftools/bcftools_norm"
   executable: "target/executable/bcftools/bcftools_norm/bcftools_norm"
   viash_version: "0.9.0"
-  git_commit: "065297be5fb2d88020fc50e042bb3f49c9254ae9"
-  git_remote: "https://x-access-token:ghs_bGw8YykA469ibXe1g5GsidZ6N0n23m22jhvl@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-25-g065297b"
+  git_commit: "a13b57d04a3f3741eedd1af10fd96a9bee126f55"
+  git_remote: "https://x-access-token:ghs_xpDMoQpz4lF1RaGsMH4IlMbO48cLeW1cIYSF@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-26-ga13b57d"
 package_config:
   name: "biobox"
   version: "main"

target/executable/bcftools/bcftools_norm/bcftools_norm

@@ -589,9 +589,9 @@ RUN echo "bcftools: \"$(bcftools --version | grep 'bcftools' | sed -n 's/^bcftoo
 
 LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo"
 LABEL org.opencontainers.image.description="Companion container for running component bcftools bcftools_norm"
-LABEL org.opencontainers.image.created="2024-11-14T13:17:00Z"
+LABEL org.opencontainers.image.created="2024-11-26T14:03:23Z"
 LABEL org.opencontainers.image.source="https://github.com/samtools/bcftools"
-LABEL org.opencontainers.image.revision="065297be5fb2d88020fc50e042bb3f49c9254ae9"
+LABEL org.opencontainers.image.revision="a13b57d04a3f3741eedd1af10fd96a9bee126f55"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER

target/executable/bcftools/bcftools_sort/.config.vsh.yaml

@@ -185,9 +185,9 @@ build_info:
   output: "target/executable/bcftools/bcftools_sort"
   executable: "target/executable/bcftools/bcftools_sort/bcftools_sort"
   viash_version: "0.9.0"
-  git_commit: "065297be5fb2d88020fc50e042bb3f49c9254ae9"
-  git_remote: "https://x-access-token:ghs_bGw8YykA469ibXe1g5GsidZ6N0n23m22jhvl@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-25-g065297b"
+  git_commit: "a13b57d04a3f3741eedd1af10fd96a9bee126f55"
+  git_remote: "https://x-access-token:ghs_xpDMoQpz4lF1RaGsMH4IlMbO48cLeW1cIYSF@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-26-ga13b57d"
 package_config:
   name: "biobox"
   version: "main"

target/executable/bcftools/bcftools_sort/bcftools_sort

@@ -483,9 +483,9 @@ RUN echo "bcftools: \"$(bcftools --version | grep 'bcftools' | sed -n 's/^bcftoo
 
 LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo"
 LABEL org.opencontainers.image.description="Companion container for running component bcftools bcftools_sort"
-LABEL org.opencontainers.image.created="2024-11-14T13:16:59Z"
+LABEL org.opencontainers.image.created="2024-11-26T14:03:22Z"
 LABEL org.opencontainers.image.source="https://github.com/samtools/bcftools"
-LABEL org.opencontainers.image.revision="065297be5fb2d88020fc50e042bb3f49c9254ae9"
+LABEL org.opencontainers.image.revision="a13b57d04a3f3741eedd1af10fd96a9bee126f55"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER

target/executable/bcftools/bcftools_stats/.config.vsh.yaml

@@ -458,9 +458,9 @@ build_info:
   output: "target/executable/bcftools/bcftools_stats"
   executable: "target/executable/bcftools/bcftools_stats/bcftools_stats"
   viash_version: "0.9.0"
-  git_commit: "065297be5fb2d88020fc50e042bb3f49c9254ae9"
-  git_remote: "https://x-access-token:ghs_bGw8YykA469ibXe1g5GsidZ6N0n23m22jhvl@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-25-g065297b"
+  git_commit: "a13b57d04a3f3741eedd1af10fd96a9bee126f55"
+  git_remote: "https://x-access-token:ghs_xpDMoQpz4lF1RaGsMH4IlMbO48cLeW1cIYSF@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-26-ga13b57d"
 package_config:
   name: "biobox"
   version: "main"

target/executable/bcftools/bcftools_stats/bcftools_stats

@@ -626,9 +626,9 @@ RUN echo "bcftools: \"$(bcftools --version | grep 'bcftools' | sed -n 's/^bcftoo
 
 LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo"
 LABEL org.opencontainers.image.description="Companion container for running component bcftools bcftools_stats"
-LABEL org.opencontainers.image.created="2024-11-14T13:16:59Z"
+LABEL org.opencontainers.image.created="2024-11-26T14:03:23Z"
 LABEL org.opencontainers.image.source="https://github.com/samtools/bcftools"
-LABEL org.opencontainers.image.revision="065297be5fb2d88020fc50e042bb3f49c9254ae9"
+LABEL org.opencontainers.image.revision="a13b57d04a3f3741eedd1af10fd96a9bee126f55"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER

target/executable/bcl_convert/.config.vsh.yaml

@@ -418,9 +418,9 @@ build_info:
   output: "target/executable/bcl_convert"
   executable: "target/executable/bcl_convert/bcl_convert"
   viash_version: "0.9.0"
-  git_commit: "065297be5fb2d88020fc50e042bb3f49c9254ae9"
-  git_remote: "https://x-access-token:ghs_bGw8YykA469ibXe1g5GsidZ6N0n23m22jhvl@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-25-g065297b"
+  git_commit: "a13b57d04a3f3741eedd1af10fd96a9bee126f55"
+  git_remote: "https://x-access-token:ghs_xpDMoQpz4lF1RaGsMH4IlMbO48cLeW1cIYSF@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-26-ga13b57d"
 package_config:
   name: "biobox"
   version: "main"

target/executable/bcl_convert/bcl_convert

@@ -599,9 +599,9 @@ RUN echo "bcl-convert: \"$(bcl-convert -V 2>&1 >/dev/null | sed -n '/Version/ s/
 
 LABEL org.opencontainers.image.authors="Toni Verbeiren, Dorien Roosen"
 LABEL org.opencontainers.image.description="Companion container for running component bcl_convert"
-LABEL org.opencontainers.image.created="2024-11-14T13:16:57Z"
+LABEL org.opencontainers.image.created="2024-11-26T14:03:21Z"
 LABEL org.opencontainers.image.source="https://github.com/viash-hub/biobox"
-LABEL org.opencontainers.image.revision="065297be5fb2d88020fc50e042bb3f49c9254ae9"
+LABEL org.opencontainers.image.revision="a13b57d04a3f3741eedd1af10fd96a9bee126f55"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER

target/executable/bd_rhapsody/bd_rhapsody_make_reference/.config.vsh.yaml

@@ -274,9 +274,9 @@ build_info:
   output: "target/executable/bd_rhapsody/bd_rhapsody_make_reference"
   executable: "target/executable/bd_rhapsody/bd_rhapsody_make_reference/bd_rhapsody_make_reference"
   viash_version: "0.9.0"
-  git_commit: "065297be5fb2d88020fc50e042bb3f49c9254ae9"
-  git_remote: "https://x-access-token:ghs_bGw8YykA469ibXe1g5GsidZ6N0n23m22jhvl@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-25-g065297b"
+  git_commit: "a13b57d04a3f3741eedd1af10fd96a9bee126f55"
+  git_remote: "https://x-access-token:ghs_xpDMoQpz4lF1RaGsMH4IlMbO48cLeW1cIYSF@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-26-ga13b57d"
 package_config:
   name: "biobox"
   version: "main"

target/executable/bd_rhapsody/bd_rhapsody_make_reference/bd_rhapsody_make_reference

@@ -554,9 +554,9 @@ RUN VERSION=$(ls -v /var/bd_rhapsody_cwl | grep '^v' | sed 's#v##' | tail -1)
 RUN echo "bdgenomics/rhapsody: \"$VERSION\"" > /var/software_versions.txt
 LABEL org.opencontainers.image.authors="Robrecht Cannoodt, Weiwei Schultz"
 LABEL org.opencontainers.image.description="Companion container for running component bd_rhapsody bd_rhapsody_make_reference"
-LABEL org.opencontainers.image.created="2024-11-14T13:17:01Z"
+LABEL org.opencontainers.image.created="2024-11-26T14:03:24Z"
 LABEL org.opencontainers.image.source="https://bitbucket.org/CRSwDev/cwl/src/master/v2.2.1/Extra_Utilities/"
-LABEL org.opencontainers.image.revision="065297be5fb2d88020fc50e042bb3f49c9254ae9"
+LABEL org.opencontainers.image.revision="a13b57d04a3f3741eedd1af10fd96a9bee126f55"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER

target/executable/bd_rhapsody/bd_rhapsody_sequence_analysis/.config.vsh.yaml

@@ -1115,9 +1115,9 @@ build_info:
   output: "target/executable/bd_rhapsody/bd_rhapsody_sequence_analysis"
   executable: "target/executable/bd_rhapsody/bd_rhapsody_sequence_analysis/bd_rhapsody_sequence_analysis"
   viash_version: "0.9.0"
-  git_commit: "065297be5fb2d88020fc50e042bb3f49c9254ae9"
-  git_remote: "https://x-access-token:ghs_bGw8YykA469ibXe1g5GsidZ6N0n23m22jhvl@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-25-g065297b"
+  git_commit: "a13b57d04a3f3741eedd1af10fd96a9bee126f55"
+  git_remote: "https://x-access-token:ghs_xpDMoQpz4lF1RaGsMH4IlMbO48cLeW1cIYSF@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-26-ga13b57d"
 package_config:
   name: "biobox"
   version: "main"

target/executable/bd_rhapsody/bd_rhapsody_sequence_analysis/bd_rhapsody_sequence_analysis

@@ -954,9 +954,9 @@ RUN VERSION=$(ls -v /var/bd_rhapsody_cwl | grep '^v' | sed 's#v##' | tail -1)
 RUN echo "bdgenomics/rhapsody: \"$VERSION\"" > /var/software_versions.txt
 LABEL org.opencontainers.image.authors="Robrecht Cannoodt, Weiwei Schultz"
 LABEL org.opencontainers.image.description="Companion container for running component bd_rhapsody bd_rhapsody_sequence_analysis"
-LABEL org.opencontainers.image.created="2024-11-14T13:17:01Z"
+LABEL org.opencontainers.image.created="2024-11-26T14:03:24Z"
 LABEL org.opencontainers.image.source="https://bitbucket.org/CRSwDev/cwl/src/master/v2.2.1"
-LABEL org.opencontainers.image.revision="065297be5fb2d88020fc50e042bb3f49c9254ae9"
+LABEL org.opencontainers.image.revision="a13b57d04a3f3741eedd1af10fd96a9bee126f55"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER

target/executable/bedtools/bedtools_bamtobed/.config.vsh.yaml

@@ -235,9 +235,9 @@ build_info:
   output: "target/executable/bedtools/bedtools_bamtobed"
   executable: "target/executable/bedtools/bedtools_bamtobed/bedtools_bamtobed"
   viash_version: "0.9.0"
-  git_commit: "065297be5fb2d88020fc50e042bb3f49c9254ae9"
-  git_remote: "https://x-access-token:ghs_bGw8YykA469ibXe1g5GsidZ6N0n23m22jhvl@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-25-g065297b"
+  git_commit: "a13b57d04a3f3741eedd1af10fd96a9bee126f55"
+  git_remote: "https://x-access-token:ghs_xpDMoQpz4lF1RaGsMH4IlMbO48cLeW1cIYSF@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-26-ga13b57d"
 package_config:
   name: "biobox"
   version: "main"

target/executable/bedtools/bedtools_bamtobed/bedtools_bamtobed

@@ -522,9 +522,9 @@ RUN echo "bedtools: \"$(bedtools --version | sed -n 's/^bedtools //p')\"" > /var
 
 LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo"
 LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_bamtobed"
-LABEL org.opencontainers.image.created="2024-11-14T13:16:58Z"
+LABEL org.opencontainers.image.created="2024-11-26T14:03:21Z"
 LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2"
-LABEL org.opencontainers.image.revision="065297be5fb2d88020fc50e042bb3f49c9254ae9"
+LABEL org.opencontainers.image.revision="a13b57d04a3f3741eedd1af10fd96a9bee126f55"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER

target/executable/bedtools/bedtools_bamtofastq/.config.vsh.yaml

@@ -187,9 +187,9 @@ build_info:
   output: "target/executable/bedtools/bedtools_bamtofastq"
   executable: "target/executable/bedtools/bedtools_bamtofastq/bedtools_bamtofastq"
   viash_version: "0.9.0"
-  git_commit: "065297be5fb2d88020fc50e042bb3f49c9254ae9"
-  git_remote: "https://x-access-token:ghs_bGw8YykA469ibXe1g5GsidZ6N0n23m22jhvl@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-25-g065297b"
+  git_commit: "a13b57d04a3f3741eedd1af10fd96a9bee126f55"
+  git_remote: "https://x-access-token:ghs_xpDMoQpz4lF1RaGsMH4IlMbO48cLeW1cIYSF@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-26-ga13b57d"
 package_config:
   name: "biobox"
   version: "main"

target/executable/bedtools/bedtools_bamtofastq/bedtools_bamtofastq

@@ -483,9 +483,9 @@ RUN echo "bedtools: \"$(bedtools --version | sed -n 's/^bedtools //p')\"" > /var
 
 LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo"
 LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_bamtofastq"
-LABEL org.opencontainers.image.created="2024-11-14T13:16:59Z"
+LABEL org.opencontainers.image.created="2024-11-26T14:03:22Z"
 LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2"
-LABEL org.opencontainers.image.revision="065297be5fb2d88020fc50e042bb3f49c9254ae9"
+LABEL org.opencontainers.image.revision="a13b57d04a3f3741eedd1af10fd96a9bee126f55"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER

target/executable/bedtools/bedtools_bed12tobed6/.config.vsh.yaml

@@ -176,9 +176,9 @@ build_info:
   output: "target/executable/bedtools/bedtools_bed12tobed6"
   executable: "target/executable/bedtools/bedtools_bed12tobed6/bedtools_bed12tobed6"
   viash_version: "0.9.0"
-  git_commit: "065297be5fb2d88020fc50e042bb3f49c9254ae9"
-  git_remote: "https://x-access-token:ghs_bGw8YykA469ibXe1g5GsidZ6N0n23m22jhvl@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-25-g065297b"
+  git_commit: "a13b57d04a3f3741eedd1af10fd96a9bee126f55"
+  git_remote: "https://x-access-token:ghs_xpDMoQpz4lF1RaGsMH4IlMbO48cLeW1cIYSF@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-26-ga13b57d"
 package_config:
   name: "biobox"
   version: "main"

target/executable/bedtools/bedtools_bed12tobed6/bedtools_bed12tobed6

@@ -480,9 +480,9 @@ RUN echo "bedtools: \"$(bedtools --version | sed -n 's/^bedtools //p')\"" > /var
 
 LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo"
 LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_bed12tobed6"
-LABEL org.opencontainers.image.created="2024-11-14T13:17:00Z"
+LABEL org.opencontainers.image.created="2024-11-26T14:03:23Z"
 LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2"
-LABEL org.opencontainers.image.revision="065297be5fb2d88020fc50e042bb3f49c9254ae9"
+LABEL org.opencontainers.image.revision="a13b57d04a3f3741eedd1af10fd96a9bee126f55"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER

target/executable/bedtools/bedtools_bedtobam/.config.vsh.yaml

@@ -214,9 +214,9 @@ build_info:
   output: "target/executable/bedtools/bedtools_bedtobam"
   executable: "target/executable/bedtools/bedtools_bedtobam/bedtools_bedtobam"
   viash_version: "0.9.0"
-  git_commit: "065297be5fb2d88020fc50e042bb3f49c9254ae9"
-  git_remote: "https://x-access-token:ghs_bGw8YykA469ibXe1g5GsidZ6N0n23m22jhvl@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-25-g065297b"
+  git_commit: "a13b57d04a3f3741eedd1af10fd96a9bee126f55"
+  git_remote: "https://x-access-token:ghs_xpDMoQpz4lF1RaGsMH4IlMbO48cLeW1cIYSF@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-26-ga13b57d"
 package_config:
   name: "biobox"
   version: "main"

target/executable/bedtools/bedtools_bedtobam/bedtools_bedtobam

@@ -496,9 +496,9 @@ RUN echo "bedtools: \"$(bedtools --version | sed -n 's/^bedtools //p')\"" > /var
 
 LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo"
 LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_bedtobam"
-LABEL org.opencontainers.image.created="2024-11-14T13:17:01Z"
+LABEL org.opencontainers.image.created="2024-11-26T14:03:24Z"
 LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2"
-LABEL org.opencontainers.image.revision="065297be5fb2d88020fc50e042bb3f49c9254ae9"
+LABEL org.opencontainers.image.revision="a13b57d04a3f3741eedd1af10fd96a9bee126f55"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER

target/executable/bedtools/bedtools_genomecov/.config.vsh.yaml

@@ -337,9 +337,9 @@ build_info:
   output: "target/executable/bedtools/bedtools_genomecov"
   executable: "target/executable/bedtools/bedtools_genomecov/bedtools_genomecov"
   viash_version: "0.9.0"
-  git_commit: "065297be5fb2d88020fc50e042bb3f49c9254ae9"
-  git_remote: "https://x-access-token:ghs_bGw8YykA469ibXe1g5GsidZ6N0n23m22jhvl@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-25-g065297b"
+  git_commit: "a13b57d04a3f3741eedd1af10fd96a9bee126f55"
+  git_remote: "https://x-access-token:ghs_xpDMoQpz4lF1RaGsMH4IlMbO48cLeW1cIYSF@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-26-ga13b57d"
 package_config:
   name: "biobox"
   version: "main"

target/executable/bedtools/bedtools_genomecov/bedtools_genomecov

@@ -591,9 +591,9 @@ RUN echo "bedtools: \"$(bedtools --version | sed -n 's/^bedtools //p')\"" > /var
 
 LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo"
 LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_genomecov"
-LABEL org.opencontainers.image.created="2024-11-14T13:17:01Z"
+LABEL org.opencontainers.image.created="2024-11-26T14:03:24Z"
 LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2"
-LABEL org.opencontainers.image.revision="065297be5fb2d88020fc50e042bb3f49c9254ae9"
+LABEL org.opencontainers.image.revision="a13b57d04a3f3741eedd1af10fd96a9bee126f55"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER

target/executable/bedtools/bedtools_getfasta/.config.vsh.yaml

@@ -232,9 +232,9 @@ build_info:
   output: "target/executable/bedtools/bedtools_getfasta"
   executable: "target/executable/bedtools/bedtools_getfasta/bedtools_getfasta"
   viash_version: "0.9.0"
-  git_commit: "065297be5fb2d88020fc50e042bb3f49c9254ae9"
-  git_remote: "https://x-access-token:ghs_bGw8YykA469ibXe1g5GsidZ6N0n23m22jhvl@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-25-g065297b"
+  git_commit: "a13b57d04a3f3741eedd1af10fd96a9bee126f55"
+  git_remote: "https://x-access-token:ghs_xpDMoQpz4lF1RaGsMH4IlMbO48cLeW1cIYSF@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-26-ga13b57d"
 package_config:
   name: "biobox"
   version: "main"

target/executable/bedtools/bedtools_getfasta/bedtools_getfasta

@@ -526,9 +526,9 @@ RUN echo "bedtools: \"$(bedtools --version | sed -n 's/^bedtools //p')\"" > /var
 
 LABEL org.opencontainers.image.authors="Dries Schaumont"
 LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_getfasta"
-LABEL org.opencontainers.image.created="2024-11-14T13:16:59Z"
+LABEL org.opencontainers.image.created="2024-11-26T14:03:22Z"
 LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2"
-LABEL org.opencontainers.image.revision="065297be5fb2d88020fc50e042bb3f49c9254ae9"
+LABEL org.opencontainers.image.revision="a13b57d04a3f3741eedd1af10fd96a9bee126f55"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER

target/executable/bedtools/bedtools_groupby/.config.vsh.yaml

@@ -273,9 +273,9 @@ build_info:
   output: "target/executable/bedtools/bedtools_groupby"
   executable: "target/executable/bedtools/bedtools_groupby/bedtools_groupby"
   viash_version: "0.9.0"
-  git_commit: "065297be5fb2d88020fc50e042bb3f49c9254ae9"
-  git_remote: "https://x-access-token:ghs_bGw8YykA469ibXe1g5GsidZ6N0n23m22jhvl@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-25-g065297b"
+  git_commit: "a13b57d04a3f3741eedd1af10fd96a9bee126f55"
+  git_remote: "https://x-access-token:ghs_xpDMoQpz4lF1RaGsMH4IlMbO48cLeW1cIYSF@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-26-ga13b57d"
 package_config:
   name: "biobox"
   version: "main"

target/executable/bedtools/bedtools_groupby/bedtools_groupby

@@ -552,9 +552,9 @@ RUN echo "bedtools: \"$(bedtools --version | sed -n 's/^bedtools //p')\"" > /var
 
 LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo"
 LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_groupby"
-LABEL org.opencontainers.image.created="2024-11-14T13:16:58Z"
+LABEL org.opencontainers.image.created="2024-11-26T14:03:22Z"
 LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2"
-LABEL org.opencontainers.image.revision="065297be5fb2d88020fc50e042bb3f49c9254ae9"
+LABEL org.opencontainers.image.revision="a13b57d04a3f3741eedd1af10fd96a9bee126f55"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER

target/executable/bedtools/bedtools_intersect/.config.vsh.yaml

@@ -410,9 +410,9 @@ build_info:
   output: "target/executable/bedtools/bedtools_intersect"
   executable: "target/executable/bedtools/bedtools_intersect/bedtools_intersect"
   viash_version: "0.9.0"
-  git_commit: "065297be5fb2d88020fc50e042bb3f49c9254ae9"
-  git_remote: "https://x-access-token:ghs_bGw8YykA469ibXe1g5GsidZ6N0n23m22jhvl@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-25-g065297b"
+  git_commit: "a13b57d04a3f3741eedd1af10fd96a9bee126f55"
+  git_remote: "https://x-access-token:ghs_xpDMoQpz4lF1RaGsMH4IlMbO48cLeW1cIYSF@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-26-ga13b57d"
 package_config:
   name: "biobox"
   version: "main"

target/executable/bedtools/bedtools_intersect/bedtools_intersect

@@ -633,9 +633,9 @@ RUN echo "bedtools: \"$(bedtools --version | sed -n 's/^bedtools //p')\"" > /var
 
 LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo"
 LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_intersect"
-LABEL org.opencontainers.image.created="2024-11-14T13:16:59Z"
+LABEL org.opencontainers.image.created="2024-11-26T14:03:23Z"
 LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2"
-LABEL org.opencontainers.image.revision="065297be5fb2d88020fc50e042bb3f49c9254ae9"
+LABEL org.opencontainers.image.revision="a13b57d04a3f3741eedd1af10fd96a9bee126f55"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER

target/executable/bedtools/bedtools_links/.config.vsh.yaml

@@ -210,9 +210,9 @@ build_info:
   output: "target/executable/bedtools/bedtools_links"
   executable: "target/executable/bedtools/bedtools_links/bedtools_links"
   viash_version: "0.9.0"
-  git_commit: "065297be5fb2d88020fc50e042bb3f49c9254ae9"
-  git_remote: "https://x-access-token:ghs_bGw8YykA469ibXe1g5GsidZ6N0n23m22jhvl@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-25-g065297b"
+  git_commit: "a13b57d04a3f3741eedd1af10fd96a9bee126f55"
+  git_remote: "https://x-access-token:ghs_xpDMoQpz4lF1RaGsMH4IlMbO48cLeW1cIYSF@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-26-ga13b57d"
 package_config:
   name: "biobox"
   version: "main"

target/executable/bedtools/bedtools_links/bedtools_links

@@ -500,9 +500,9 @@ RUN echo "bedtools: \"$(bedtools --version | sed -n 's/^bedtools //p')\"" > /var
 
 LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo"
 LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_links"
-LABEL org.opencontainers.image.created="2024-11-14T13:17:00Z"
+LABEL org.opencontainers.image.created="2024-11-26T14:03:24Z"
 LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2"
-LABEL org.opencontainers.image.revision="065297be5fb2d88020fc50e042bb3f49c9254ae9"
+LABEL org.opencontainers.image.revision="a13b57d04a3f3741eedd1af10fd96a9bee126f55"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER

target/executable/bedtools/bedtools_merge/.config.vsh.yaml

@@ -279,9 +279,9 @@ build_info:
   output: "target/executable/bedtools/bedtools_merge"
   executable: "target/executable/bedtools/bedtools_merge/bedtools_merge"
   viash_version: "0.9.0"
-  git_commit: "065297be5fb2d88020fc50e042bb3f49c9254ae9"
-  git_remote: "https://x-access-token:ghs_bGw8YykA469ibXe1g5GsidZ6N0n23m22jhvl@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-25-g065297b"
+  git_commit: "a13b57d04a3f3741eedd1af10fd96a9bee126f55"
+  git_remote: "https://x-access-token:ghs_xpDMoQpz4lF1RaGsMH4IlMbO48cLeW1cIYSF@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-26-ga13b57d"
 package_config:
   name: "biobox"
   version: "main"

target/executable/bedtools/bedtools_merge/bedtools_merge

@@ -558,9 +558,9 @@ RUN echo "bedtools: \"$(bedtools --version | sed -n 's/^bedtools //p')\"" > /var
 
 LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo"
 LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_merge"
-LABEL org.opencontainers.image.created="2024-11-14T13:17:01Z"
+LABEL org.opencontainers.image.created="2024-11-26T14:03:24Z"
 LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2"
-LABEL org.opencontainers.image.revision="065297be5fb2d88020fc50e042bb3f49c9254ae9"
+LABEL org.opencontainers.image.revision="a13b57d04a3f3741eedd1af10fd96a9bee126f55"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER

target/executable/bedtools/bedtools_sort/.config.vsh.yaml

@@ -222,9 +222,9 @@ build_info:
   output: "target/executable/bedtools/bedtools_sort"
   executable: "target/executable/bedtools/bedtools_sort/bedtools_sort"
   viash_version: "0.9.0"
-  git_commit: "065297be5fb2d88020fc50e042bb3f49c9254ae9"
-  git_remote: "https://x-access-token:ghs_bGw8YykA469ibXe1g5GsidZ6N0n23m22jhvl@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-25-g065297b"
+  git_commit: "a13b57d04a3f3741eedd1af10fd96a9bee126f55"
+  git_remote: "https://x-access-token:ghs_xpDMoQpz4lF1RaGsMH4IlMbO48cLeW1cIYSF@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-26-ga13b57d"
 package_config:
   name: "biobox"
   version: "main"

target/executable/bedtools/bedtools_sort/bedtools_sort

@@ -509,9 +509,9 @@ RUN echo "bedtools: \"$(bedtools --version | sed -n 's/^bedtools //p')\"" > /var
 
 LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo"
 LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_sort"
-LABEL org.opencontainers.image.created="2024-11-14T13:16:59Z"
+LABEL org.opencontainers.image.created="2024-11-26T14:03:23Z"
 LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2"
-LABEL org.opencontainers.image.revision="065297be5fb2d88020fc50e042bb3f49c9254ae9"
+LABEL org.opencontainers.image.revision="a13b57d04a3f3741eedd1af10fd96a9bee126f55"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER

target/executable/busco/busco_download_datasets/.config.vsh.yaml

@@ -158,9 +158,9 @@ build_info:
   output: "target/executable/busco/busco_download_datasets"
   executable: "target/executable/busco/busco_download_datasets/busco_download_datasets"
   viash_version: "0.9.0"
-  git_commit: "065297be5fb2d88020fc50e042bb3f49c9254ae9"
-  git_remote: "https://x-access-token:ghs_bGw8YykA469ibXe1g5GsidZ6N0n23m22jhvl@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-25-g065297b"
+  git_commit: "a13b57d04a3f3741eedd1af10fd96a9bee126f55"
+  git_remote: "https://x-access-token:ghs_xpDMoQpz4lF1RaGsMH4IlMbO48cLeW1cIYSF@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-26-ga13b57d"
 package_config:
   name: "biobox"
   version: "main"

target/executable/busco/busco_download_datasets/busco_download_datasets

@@ -475,9 +475,9 @@ RUN busco --version | sed 's/BUSCO\s\(.*\)/busco: "\1"/' > /var/software_version
 
 LABEL org.opencontainers.image.authors="Dorien Roosen"
 LABEL org.opencontainers.image.description="Companion container for running component busco busco_download_datasets"
-LABEL org.opencontainers.image.created="2024-11-14T13:16:57Z"
+LABEL org.opencontainers.image.created="2024-11-26T14:03:21Z"
 LABEL org.opencontainers.image.source="https://gitlab.com/ezlab/busco"
-LABEL org.opencontainers.image.revision="065297be5fb2d88020fc50e042bb3f49c9254ae9"
+LABEL org.opencontainers.image.revision="a13b57d04a3f3741eedd1af10fd96a9bee126f55"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER

target/executable/busco/busco_list_datasets/.config.vsh.yaml

@@ -145,9 +145,9 @@ build_info:
   output: "target/executable/busco/busco_list_datasets"
   executable: "target/executable/busco/busco_list_datasets/busco_list_datasets"
   viash_version: "0.9.0"
-  git_commit: "065297be5fb2d88020fc50e042bb3f49c9254ae9"
-  git_remote: "https://x-access-token:ghs_bGw8YykA469ibXe1g5GsidZ6N0n23m22jhvl@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-25-g065297b"
+  git_commit: "a13b57d04a3f3741eedd1af10fd96a9bee126f55"
+  git_remote: "https://x-access-token:ghs_xpDMoQpz4lF1RaGsMH4IlMbO48cLeW1cIYSF@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-26-ga13b57d"
 package_config:
   name: "biobox"
   version: "main"

target/executable/busco/busco_list_datasets/busco_list_datasets

@@ -465,9 +465,9 @@ RUN busco --version | sed 's/BUSCO\s\(.*\)/busco: "\1"/' > /var/software_version
 
 LABEL org.opencontainers.image.authors="Dorien Roosen"
 LABEL org.opencontainers.image.description="Companion container for running component busco busco_list_datasets"
-LABEL org.opencontainers.image.created="2024-11-14T13:16:57Z"
+LABEL org.opencontainers.image.created="2024-11-26T14:03:20Z"
 LABEL org.opencontainers.image.source="https://gitlab.com/ezlab/busco"
-LABEL org.opencontainers.image.revision="065297be5fb2d88020fc50e042bb3f49c9254ae9"
+LABEL org.opencontainers.image.revision="a13b57d04a3f3741eedd1af10fd96a9bee126f55"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER

target/executable/busco/busco_run/.config.vsh.yaml

@@ -423,9 +423,9 @@ build_info:
   output: "target/executable/busco/busco_run"
   executable: "target/executable/busco/busco_run/busco_run"
   viash_version: "0.9.0"
-  git_commit: "065297be5fb2d88020fc50e042bb3f49c9254ae9"
-  git_remote: "https://x-access-token:ghs_bGw8YykA469ibXe1g5GsidZ6N0n23m22jhvl@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-25-g065297b"
+  git_commit: "a13b57d04a3f3741eedd1af10fd96a9bee126f55"
+  git_remote: "https://x-access-token:ghs_xpDMoQpz4lF1RaGsMH4IlMbO48cLeW1cIYSF@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-26-ga13b57d"
 package_config:
   name: "biobox"
   version: "main"

target/executable/busco/busco_run/busco_run

@@ -632,9 +632,9 @@ RUN busco --version | sed 's/BUSCO\s\(.*\)/busco: "\1"/' > /var/software_version
 
 LABEL org.opencontainers.image.authors="Dorien Roosen"
 LABEL org.opencontainers.image.description="Companion container for running component busco busco_run"
-LABEL org.opencontainers.image.created="2024-11-14T13:16:57Z"
+LABEL org.opencontainers.image.created="2024-11-26T14:03:20Z"
 LABEL org.opencontainers.image.source="https://gitlab.com/ezlab/busco"
-LABEL org.opencontainers.image.revision="065297be5fb2d88020fc50e042bb3f49c9254ae9"
+LABEL org.opencontainers.image.revision="a13b57d04a3f3741eedd1af10fd96a9bee126f55"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER

target/executable/cellranger/cellranger_mkref/.config.vsh.yaml

@@ -195,9 +195,9 @@ build_info:
   output: "target/executable/cellranger/cellranger_mkref"
   executable: "target/executable/cellranger/cellranger_mkref/cellranger_mkref"
   viash_version: "0.9.0"
-  git_commit: "065297be5fb2d88020fc50e042bb3f49c9254ae9"
-  git_remote: "https://x-access-token:ghs_bGw8YykA469ibXe1g5GsidZ6N0n23m22jhvl@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-25-g065297b"
+  git_commit: "a13b57d04a3f3741eedd1af10fd96a9bee126f55"
+  git_remote: "https://x-access-token:ghs_xpDMoQpz4lF1RaGsMH4IlMbO48cLeW1cIYSF@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-26-ga13b57d"
 package_config:
   name: "biobox"
   version: "main"

target/executable/cellranger/cellranger_mkref/cellranger_mkref

@@ -481,9 +481,9 @@ RUN apt-get update && \
 
 LABEL org.opencontainers.image.authors="Emma Rousseau"
 LABEL org.opencontainers.image.description="Companion container for running component cellranger cellranger_mkref"
-LABEL org.opencontainers.image.created="2024-11-14T13:16:57Z"
+LABEL org.opencontainers.image.created="2024-11-26T14:03:21Z"
 LABEL org.opencontainers.image.source="https://github.com/10XGenomics/cellranger/blob/main/lib/python/cellranger/reference_builder.py"
-LABEL org.opencontainers.image.revision="065297be5fb2d88020fc50e042bb3f49c9254ae9"
+LABEL org.opencontainers.image.revision="a13b57d04a3f3741eedd1af10fd96a9bee126f55"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER

target/executable/cutadapt/.config.vsh.yaml

@@ -740,9 +740,9 @@ build_info:
   output: "target/executable/cutadapt"
   executable: "target/executable/cutadapt/cutadapt"
   viash_version: "0.9.0"
-  git_commit: "065297be5fb2d88020fc50e042bb3f49c9254ae9"
-  git_remote: "https://x-access-token:ghs_bGw8YykA469ibXe1g5GsidZ6N0n23m22jhvl@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-25-g065297b"
+  git_commit: "a13b57d04a3f3741eedd1af10fd96a9bee126f55"
+  git_remote: "https://x-access-token:ghs_xpDMoQpz4lF1RaGsMH4IlMbO48cLeW1cIYSF@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-26-ga13b57d"
 package_config:
   name: "biobox"
   version: "main"

target/executable/cutadapt/cutadapt

@@ -831,9 +831,9 @@ RUN cutadapt --version | sed 's/\(.*\)/cutadapt: "\1"/' > /var/software_versions
 
 LABEL org.opencontainers.image.authors="Toni Verbeiren"
 LABEL org.opencontainers.image.description="Companion container for running component cutadapt"
-LABEL org.opencontainers.image.created="2024-11-14T13:16:52Z"
+LABEL org.opencontainers.image.created="2024-11-26T14:03:16Z"
 LABEL org.opencontainers.image.source="https://github.com/marcelm/cutadapt"
-LABEL org.opencontainers.image.revision="065297be5fb2d88020fc50e042bb3f49c9254ae9"
+LABEL org.opencontainers.image.revision="a13b57d04a3f3741eedd1af10fd96a9bee126f55"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER

target/executable/falco/.config.vsh.yaml

@@ -317,9 +317,9 @@ build_info:
   output: "target/executable/falco"
   executable: "target/executable/falco/falco"
   viash_version: "0.9.0"
-  git_commit: "065297be5fb2d88020fc50e042bb3f49c9254ae9"
-  git_remote: "https://x-access-token:ghs_bGw8YykA469ibXe1g5GsidZ6N0n23m22jhvl@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-25-g065297b"
+  git_commit: "a13b57d04a3f3741eedd1af10fd96a9bee126f55"
+  git_remote: "https://x-access-token:ghs_xpDMoQpz4lF1RaGsMH4IlMbO48cLeW1cIYSF@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-26-ga13b57d"
 package_config:
   name: "biobox"
   version: "main"

target/executable/falco/falco

@@ -589,9 +589,9 @@ RUN echo "falco: \"$(falco -v | sed -n 's/^falco //p')\"" > /var/software_versio
 
 LABEL org.opencontainers.image.authors="Toni Verbeiren"
 LABEL org.opencontainers.image.description="Companion container for running component falco"
-LABEL org.opencontainers.image.created="2024-11-14T13:16:48Z"
+LABEL org.opencontainers.image.created="2024-11-26T14:03:13Z"
 LABEL org.opencontainers.image.source="https://github.com/smithlabcode/falco"
-LABEL org.opencontainers.image.revision="065297be5fb2d88020fc50e042bb3f49c9254ae9"
+LABEL org.opencontainers.image.revision="a13b57d04a3f3741eedd1af10fd96a9bee126f55"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER

target/executable/fastp/.config.vsh.yaml

@@ -1083,9 +1083,9 @@ build_info:
   output: "target/executable/fastp"
   executable: "target/executable/fastp/fastp"
   viash_version: "0.9.0"
-  git_commit: "065297be5fb2d88020fc50e042bb3f49c9254ae9"
-  git_remote: "https://x-access-token:ghs_bGw8YykA469ibXe1g5GsidZ6N0n23m22jhvl@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-25-g065297b"
+  git_commit: "a13b57d04a3f3741eedd1af10fd96a9bee126f55"
+  git_remote: "https://x-access-token:ghs_xpDMoQpz4lF1RaGsMH4IlMbO48cLeW1cIYSF@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-26-ga13b57d"
 package_config:
   name: "biobox"
   version: "main"

target/executable/fastp/fastp

@@ -1028,9 +1028,9 @@ RUN fastp --version 2>&1 | sed 's# #: "#;s#$#"#' > /var/software_versions.txt
 
 LABEL org.opencontainers.image.authors="Robrecht Cannoodt"
 LABEL org.opencontainers.image.description="Companion container for running component fastp"
-LABEL org.opencontainers.image.created="2024-11-14T13:17:02Z"
+LABEL org.opencontainers.image.created="2024-11-26T14:03:24Z"
 LABEL org.opencontainers.image.source="https://github.com/OpenGene/fastp"
-LABEL org.opencontainers.image.revision="065297be5fb2d88020fc50e042bb3f49c9254ae9"
+LABEL org.opencontainers.image.revision="a13b57d04a3f3741eedd1af10fd96a9bee126f55"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER

target/executable/fastqc/.config.vsh.yaml

@@ -340,9 +340,9 @@ build_info:
   output: "target/executable/fastqc"
   executable: "target/executable/fastqc/fastqc"
   viash_version: "0.9.0"
-  git_commit: "065297be5fb2d88020fc50e042bb3f49c9254ae9"
-  git_remote: "https://x-access-token:ghs_bGw8YykA469ibXe1g5GsidZ6N0n23m22jhvl@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-25-g065297b"
+  git_commit: "a13b57d04a3f3741eedd1af10fd96a9bee126f55"
+  git_remote: "https://x-access-token:ghs_xpDMoQpz4lF1RaGsMH4IlMbO48cLeW1cIYSF@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-26-ga13b57d"
 package_config:
   name: "biobox"
   version: "main"

target/executable/fastqc/fastqc

@@ -601,9 +601,9 @@ RUN echo "fastqc: $(fastqc --version | sed -n 's/^FastQC //p')" > /var/software_
 
 LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo"
 LABEL org.opencontainers.image.description="Companion container for running component fastqc"
-LABEL org.opencontainers.image.created="2024-11-14T13:17:03Z"
+LABEL org.opencontainers.image.created="2024-11-26T14:03:26Z"
 LABEL org.opencontainers.image.source="https://github.com/s-andrews/FastQC"
-LABEL org.opencontainers.image.revision="065297be5fb2d88020fc50e042bb3f49c9254ae9"
+LABEL org.opencontainers.image.revision="a13b57d04a3f3741eedd1af10fd96a9bee126f55"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER

target/executable/featurecounts/.config.vsh.yaml

@@ -645,9 +645,9 @@ build_info:
   output: "target/executable/featurecounts"
   executable: "target/executable/featurecounts/featurecounts"
   viash_version: "0.9.0"
-  git_commit: "065297be5fb2d88020fc50e042bb3f49c9254ae9"
-  git_remote: "https://x-access-token:ghs_bGw8YykA469ibXe1g5GsidZ6N0n23m22jhvl@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-25-g065297b"
+  git_commit: "a13b57d04a3f3741eedd1af10fd96a9bee126f55"
+  git_remote: "https://x-access-token:ghs_xpDMoQpz4lF1RaGsMH4IlMbO48cLeW1cIYSF@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-26-ga13b57d"
 package_config:
   name: "biobox"
   version: "main"

target/executable/featurecounts/featurecounts

@@ -754,9 +754,9 @@ RUN featureCounts -v 2>&1 | sed 's/featureCounts v\([0-9.]*\)/featureCounts: \1/
 
 LABEL org.opencontainers.image.authors="Sai Nirmayi Yasa"
 LABEL org.opencontainers.image.description="Companion container for running component featurecounts"
-LABEL org.opencontainers.image.created="2024-11-14T13:16:46Z"
+LABEL org.opencontainers.image.created="2024-11-26T14:03:11Z"
 LABEL org.opencontainers.image.source="https://github.com/ShiLab-Bioinformatics/subread"
-LABEL org.opencontainers.image.revision="065297be5fb2d88020fc50e042bb3f49c9254ae9"
+LABEL org.opencontainers.image.revision="a13b57d04a3f3741eedd1af10fd96a9bee126f55"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER

target/executable/fq_subsample/.config.vsh.yaml

@@ -190,9 +190,9 @@ build_info:
   output: "target/executable/fq_subsample"
   executable: "target/executable/fq_subsample/fq_subsample"
   viash_version: "0.9.0"
-  git_commit: "065297be5fb2d88020fc50e042bb3f49c9254ae9"
-  git_remote: "https://x-access-token:ghs_bGw8YykA469ibXe1g5GsidZ6N0n23m22jhvl@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-25-g065297b"
+  git_commit: "a13b57d04a3f3741eedd1af10fd96a9bee126f55"
+  git_remote: "https://x-access-token:ghs_xpDMoQpz4lF1RaGsMH4IlMbO48cLeW1cIYSF@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-26-ga13b57d"
 package_config:
   name: "biobox"
   version: "main"

target/executable/fq_subsample/fq_subsample

@@ -493,9 +493,9 @@ mv target/release/fq /usr/local/bin/ && \
 cd / && rm -rf /fq
 
 LABEL org.opencontainers.image.description="Companion container for running component fq_subsample"
-LABEL org.opencontainers.image.created="2024-11-14T13:16:55Z"
+LABEL org.opencontainers.image.created="2024-11-26T14:03:19Z"
 LABEL org.opencontainers.image.source="https://github.com/stjude-rust-labs/fq"
-LABEL org.opencontainers.image.revision="065297be5fb2d88020fc50e042bb3f49c9254ae9"
+LABEL org.opencontainers.image.revision="a13b57d04a3f3741eedd1af10fd96a9bee126f55"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER

target/executable/gffread/.config.vsh.yaml

@@ -685,9 +685,9 @@ build_info:
   output: "target/executable/gffread"
   executable: "target/executable/gffread/gffread"
   viash_version: "0.9.0"
-  git_commit: "065297be5fb2d88020fc50e042bb3f49c9254ae9"
-  git_remote: "https://x-access-token:ghs_bGw8YykA469ibXe1g5GsidZ6N0n23m22jhvl@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-25-g065297b"
+  git_commit: "a13b57d04a3f3741eedd1af10fd96a9bee126f55"
+  git_remote: "https://x-access-token:ghs_xpDMoQpz4lF1RaGsMH4IlMbO48cLeW1cIYSF@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-26-ga13b57d"
 package_config:
   name: "biobox"
   version: "main"

target/executable/gffread/gffread

@@ -807,9 +807,9 @@ RUN echo "gffread: \"$(gffread --version 2>&1)\"" > /var/software_versions.txt
 
 LABEL org.opencontainers.image.authors="Emma Rousseau"
 LABEL org.opencontainers.image.description="Companion container for running component gffread"
-LABEL org.opencontainers.image.created="2024-11-14T13:16:50Z"
+LABEL org.opencontainers.image.created="2024-11-26T14:03:14Z"
 LABEL org.opencontainers.image.source="https://github.com/gpertea/gffread"
-LABEL org.opencontainers.image.revision="065297be5fb2d88020fc50e042bb3f49c9254ae9"
+LABEL org.opencontainers.image.revision="a13b57d04a3f3741eedd1af10fd96a9bee126f55"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER

target/executable/kallisto/kallisto_index/.config.vsh.yaml

@@ -218,9 +218,9 @@ build_info:
   output: "target/executable/kallisto/kallisto_index"
   executable: "target/executable/kallisto/kallisto_index/kallisto_index"
   viash_version: "0.9.0"
-  git_commit: "065297be5fb2d88020fc50e042bb3f49c9254ae9"
-  git_remote: "https://x-access-token:ghs_bGw8YykA469ibXe1g5GsidZ6N0n23m22jhvl@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-25-g065297b"
+  git_commit: "a13b57d04a3f3741eedd1af10fd96a9bee126f55"
+  git_remote: "https://x-access-token:ghs_xpDMoQpz4lF1RaGsMH4IlMbO48cLeW1cIYSF@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-26-ga13b57d"
 package_config:
   name: "biobox"
   version: "main"

target/executable/kallisto/kallisto_index/kallisto_index

@@ -506,9 +506,9 @@ tar -xzf kallisto_linux-v0.50.1.tar.gz && \
 mv kallisto/kallisto /usr/local/bin/
 
 LABEL org.opencontainers.image.description="Companion container for running component kallisto kallisto_index"
-LABEL org.opencontainers.image.created="2024-11-14T13:16:49Z"
+LABEL org.opencontainers.image.created="2024-11-26T14:03:14Z"
 LABEL org.opencontainers.image.source="https://github.com/pachterlab/kallisto"
-LABEL org.opencontainers.image.revision="065297be5fb2d88020fc50e042bb3f49c9254ae9"
+LABEL org.opencontainers.image.revision="a13b57d04a3f3741eedd1af10fd96a9bee126f55"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER

target/executable/kallisto/kallisto_quant/.config.vsh.yaml

@@ -246,9 +246,9 @@ build_info:
   output: "target/executable/kallisto/kallisto_quant"
   executable: "target/executable/kallisto/kallisto_quant/kallisto_quant"
   viash_version: "0.9.0"
-  git_commit: "065297be5fb2d88020fc50e042bb3f49c9254ae9"
-  git_remote: "https://x-access-token:ghs_bGw8YykA469ibXe1g5GsidZ6N0n23m22jhvl@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-25-g065297b"
+  git_commit: "a13b57d04a3f3741eedd1af10fd96a9bee126f55"
+  git_remote: "https://x-access-token:ghs_xpDMoQpz4lF1RaGsMH4IlMbO48cLeW1cIYSF@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-26-ga13b57d"
 package_config:
   name: "biobox"
   version: "main"

target/executable/kallisto/kallisto_quant/kallisto_quant

@@ -522,9 +522,9 @@ mv kallisto/kallisto /usr/local/bin/
 RUN echo "kallisto: $(kallisto version | sed 's/kallisto, version //')" > /var/software_versions.txt
 
 LABEL org.opencontainers.image.description="Companion container for running component kallisto kallisto_quant"
-LABEL org.opencontainers.image.created="2024-11-14T13:16:49Z"
+LABEL org.opencontainers.image.created="2024-11-26T14:03:14Z"
 LABEL org.opencontainers.image.source="https://github.com/pachterlab/kallisto"
-LABEL org.opencontainers.image.revision="065297be5fb2d88020fc50e042bb3f49c9254ae9"
+LABEL org.opencontainers.image.revision="a13b57d04a3f3741eedd1af10fd96a9bee126f55"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER

target/executable/lofreq/lofreq_call/.config.vsh.yaml

@@ -507,9 +507,9 @@ build_info:
   output: "target/executable/lofreq/lofreq_call"
   executable: "target/executable/lofreq/lofreq_call/lofreq_call"
   viash_version: "0.9.0"
-  git_commit: "065297be5fb2d88020fc50e042bb3f49c9254ae9"
-  git_remote: "https://x-access-token:ghs_bGw8YykA469ibXe1g5GsidZ6N0n23m22jhvl@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-25-g065297b"
+  git_commit: "a13b57d04a3f3741eedd1af10fd96a9bee126f55"
+  git_remote: "https://x-access-token:ghs_xpDMoQpz4lF1RaGsMH4IlMbO48cLeW1cIYSF@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-26-ga13b57d"
 package_config:
   name: "biobox"
   version: "main"

target/executable/lofreq/lofreq_call/lofreq_call

@@ -656,9 +656,9 @@ echo "lofreq: $version" > /var/software_versions.txt
 
 LABEL org.opencontainers.image.authors="Kai Waldrant"
 LABEL org.opencontainers.image.description="Companion container for running component lofreq lofreq_call"
-LABEL org.opencontainers.image.created="2024-11-14T13:17:02Z"
+LABEL org.opencontainers.image.created="2024-11-26T14:03:25Z"
 LABEL org.opencontainers.image.source="https://github.com/viash-hub/biobox"
-LABEL org.opencontainers.image.revision="065297be5fb2d88020fc50e042bb3f49c9254ae9"
+LABEL org.opencontainers.image.revision="a13b57d04a3f3741eedd1af10fd96a9bee126f55"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER

target/executable/lofreq/lofreq_indelqual/.config.vsh.yaml

@@ -215,9 +215,9 @@ build_info:
   output: "target/executable/lofreq/lofreq_indelqual"
   executable: "target/executable/lofreq/lofreq_indelqual/lofreq_indelqual"
   viash_version: "0.9.0"
-  git_commit: "065297be5fb2d88020fc50e042bb3f49c9254ae9"
-  git_remote: "https://x-access-token:ghs_bGw8YykA469ibXe1g5GsidZ6N0n23m22jhvl@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-25-g065297b"
+  git_commit: "a13b57d04a3f3741eedd1af10fd96a9bee126f55"
+  git_remote: "https://x-access-token:ghs_xpDMoQpz4lF1RaGsMH4IlMbO48cLeW1cIYSF@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-26-ga13b57d"
 package_config:
   name: "biobox"
   version: "main"

target/executable/lofreq/lofreq_indelqual/lofreq_indelqual

@@ -501,9 +501,9 @@ echo "lofreq: $version" > /var/software_versions.txt
 
 LABEL org.opencontainers.image.authors="Kai Waldrant"
 LABEL org.opencontainers.image.description="Companion container for running component lofreq lofreq_indelqual"
-LABEL org.opencontainers.image.created="2024-11-14T13:17:03Z"
+LABEL org.opencontainers.image.created="2024-11-26T14:03:25Z"
 LABEL org.opencontainers.image.source="https://github.com/viash-hub/biobox"
-LABEL org.opencontainers.image.revision="065297be5fb2d88020fc50e042bb3f49c9254ae9"
+LABEL org.opencontainers.image.revision="a13b57d04a3f3741eedd1af10fd96a9bee126f55"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER

target/executable/multiqc/.config.vsh.yaml

@@ -456,9 +456,9 @@ build_info:
   output: "target/executable/multiqc"
   executable: "target/executable/multiqc/multiqc"
   viash_version: "0.9.0"
-  git_commit: "065297be5fb2d88020fc50e042bb3f49c9254ae9"
-  git_remote: "https://x-access-token:ghs_bGw8YykA469ibXe1g5GsidZ6N0n23m22jhvl@github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-25-g065297b"
+  git_commit: "a13b57d04a3f3741eedd1af10fd96a9bee126f55"
+  git_remote: "https://x-access-token:ghs_xpDMoQpz4lF1RaGsMH4IlMbO48cLeW1cIYSF@github.com/viash-hub/biobox"
+  git_tag: "v0.2.0-26-ga13b57d"
 package_config:
   name: "biobox"
   version: "main"

target/executable/multiqc/multiqc

@@ -637,9 +637,9 @@ RUN multiqc --version | sed 's/multiqc, version\s\(.*\)/multiqc: "\1"/' > /var/s
 
 LABEL org.opencontainers.image.authors="Dorien Roosen"
 LABEL org.opencontainers.image.description="Companion container for running component multiqc"
-LABEL org.opencontainers.image.created="2024-11-14T13:16:52Z"
+LABEL org.opencontainers.image.created="2024-11-26T14:03:16Z"
 LABEL org.opencontainers.image.source="https://github.com/viash-hub/biobox"
-LABEL org.opencontainers.image.revision="065297be5fb2d88020fc50e042bb3f49c9254ae9"
+LABEL org.opencontainers.image.revision="a13b57d04a3f3741eedd1af10fd96a9bee126f55"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER