From 6c588ad420d33336be5fff6fb21aedafa9b3825f Mon Sep 17 00:00:00 2001 From: CI Date: Wed, 17 Sep 2025 08:51:44 +0000 Subject: [PATCH] Build branch biobox/v0.4.x with version v0.4.0 to biobox on branch v0.4 (666507c) Build pipeline: viash-hub.biobox.v0.4.x-8mmrs Source commit: https://github.com/viash-hub/biobox/commit/666507c86de9150bfbdffdb2dbabc1dbde3c3262 Source message: Merge remote-tracking branch 'origin/main' into v0.4.x --- CHANGELOG.md | 2 +- _viash.yaml | 38 ++- .../agat_convert_bed2gff/.config.vsh.yaml | 130 +---------- .../agat_convert_bed2gff/agat_convert_bed2gff | 4 +- .../agat_convert_embl2gff/.config.vsh.yaml | 130 +---------- .../agat_convert_embl2gff | 4 +- .../agat_convert_genscan2gff/.config.vsh.yaml | 130 +---------- .../agat_convert_genscan2gff | 4 +- .../agat_convert_mfannot2gff/.config.vsh.yaml | 130 +---------- .../agat_convert_mfannot2gff | 4 +- .../agat_convert_sp_gff2gtf/.config.vsh.yaml | 130 +---------- .../agat_convert_sp_gff2gtf | 4 +- 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+---------- .../nextflow/bedtools/bedtools_shift/main.nf | 216 +----------------- .../bedtools_shuffle/.config.vsh.yaml | 130 +---------- .../bedtools/bedtools_shuffle/main.nf | 216 +----------------- .../bedtools/bedtools_slop/.config.vsh.yaml | 130 +---------- .../nextflow/bedtools/bedtools_slop/main.nf | 216 +----------------- .../bedtools/bedtools_sort/.config.vsh.yaml | 130 +---------- .../nextflow/bedtools/bedtools_sort/main.nf | 216 +----------------- .../bedtools_spacing/.config.vsh.yaml | 130 +---------- .../bedtools/bedtools_spacing/main.nf | 216 +----------------- .../bedtools/bedtools_split/.config.vsh.yaml | 130 +---------- .../nextflow/bedtools/bedtools_split/main.nf | 216 +----------------- .../bedtools_subtract/.config.vsh.yaml | 130 +---------- .../bedtools/bedtools_subtract/main.nf | 216 +----------------- .../bedtools_summary/.config.vsh.yaml | 130 +---------- .../bedtools/bedtools_summary/main.nf | 216 +----------------- .../bedtools/bedtools_tag/.config.vsh.yaml | 130 +---------- target/nextflow/bedtools/bedtools_tag/main.nf | 216 +----------------- .../bedtools_unionbedg/.config.vsh.yaml | 130 +---------- .../bedtools/bedtools_unionbedg/main.nf | 216 +----------------- .../bedtools/bedtools_window/.config.vsh.yaml | 130 +---------- .../nextflow/bedtools/bedtools_window/main.nf | 216 +----------------- .../bowtie2/bowtie2_align/.config.vsh.yaml | 130 +---------- target/nextflow/bowtie2/bowtie2_align/main.nf | 216 +----------------- .../bowtie2/bowtie2_build/.config.vsh.yaml | 130 +---------- target/nextflow/bowtie2/bowtie2_build/main.nf | 216 +----------------- .../bowtie2/bowtie2_inspect/.config.vsh.yaml | 130 +---------- .../nextflow/bowtie2/bowtie2_inspect/main.nf | 216 +----------------- .../busco_download_datasets/.config.vsh.yaml | 130 +---------- .../busco/busco_download_datasets/main.nf | 216 +----------------- .../busco_list_datasets/.config.vsh.yaml | 130 +---------- .../busco/busco_list_datasets/main.nf | 216 +----------------- .../nextflow/busco/busco_run/.config.vsh.yaml | 130 +---------- target/nextflow/busco/busco_run/main.nf | 216 +----------------- target/nextflow/bwa/bwa_aln/.config.vsh.yaml | 130 +---------- target/nextflow/bwa/bwa_aln/main.nf | 216 +----------------- .../nextflow/bwa/bwa_index/.config.vsh.yaml | 130 +---------- target/nextflow/bwa/bwa_index/main.nf | 216 +----------------- target/nextflow/bwa/bwa_mem/.config.vsh.yaml | 130 +---------- target/nextflow/bwa/bwa_mem/main.nf | 216 +----------------- .../nextflow/bwa/bwa_sampe/.config.vsh.yaml | 130 +---------- target/nextflow/bwa/bwa_sampe/main.nf | 216 +----------------- .../nextflow/bwa/bwa_samse/.config.vsh.yaml | 130 +---------- target/nextflow/bwa/bwa_samse/main.nf | 216 +----------------- .../cellranger_count/.config.vsh.yaml | 130 +---------- .../cellranger/cellranger_count/main.nf | 216 +----------------- .../cellranger_mkref/.config.vsh.yaml | 130 +---------- .../cellranger/cellranger_mkref/main.nf | 216 +----------------- target/nextflow/cutadapt/.config.vsh.yaml | 130 +---------- target/nextflow/cutadapt/main.nf | 216 +----------------- target/nextflow/falco/.config.vsh.yaml | 130 +---------- target/nextflow/falco/main.nf | 216 +----------------- target/nextflow/fastp/.config.vsh.yaml | 130 +---------- target/nextflow/fastp/main.nf | 216 +----------------- target/nextflow/fastqc/.config.vsh.yaml | 130 +---------- target/nextflow/fastqc/main.nf | 216 +----------------- .../nextflow/featurecounts/.config.vsh.yaml | 130 +---------- target/nextflow/featurecounts/main.nf | 216 +----------------- target/nextflow/fq/fq_filter/.config.vsh.yaml | 130 +---------- target/nextflow/fq/fq_filter/main.nf | 216 +----------------- .../nextflow/fq/fq_generate/.config.vsh.yaml | 130 +---------- target/nextflow/fq/fq_generate/main.nf | 216 +----------------- target/nextflow/fq/fq_lint/.config.vsh.yaml | 130 +---------- target/nextflow/fq/fq_lint/main.nf | 216 +----------------- .../nextflow/fq/fq_subsample/.config.vsh.yaml | 130 +---------- target/nextflow/fq/fq_subsample/main.nf | 216 +----------------- target/nextflow/gffread/.config.vsh.yaml | 130 +---------- target/nextflow/gffread/main.nf | 216 +----------------- .../kallisto/kallisto_index/.config.vsh.yaml | 130 +---------- .../nextflow/kallisto/kallisto_index/main.nf | 216 +----------------- .../kallisto/kallisto_quant/.config.vsh.yaml | 130 +---------- .../nextflow/kallisto/kallisto_quant/main.nf | 216 +----------------- .../lofreq/lofreq_call/.config.vsh.yaml | 130 +---------- target/nextflow/lofreq/lofreq_call/main.nf | 216 +----------------- .../lofreq/lofreq_indelqual/.config.vsh.yaml | 130 +---------- .../nextflow/lofreq/lofreq_indelqual/main.nf | 216 +----------------- target/nextflow/multiqc/.config.vsh.yaml | 130 +---------- target/nextflow/multiqc/main.nf | 216 +----------------- target/nextflow/nanoplot/.config.vsh.yaml | 130 +---------- target/nextflow/nanoplot/main.nf | 216 +----------------- target/nextflow/pear/.config.vsh.yaml | 130 +---------- target/nextflow/pear/main.nf | 216 +----------------- .../qualimap/qualimap_rnaseq/.config.vsh.yaml | 130 +---------- .../nextflow/qualimap/qualimap_rnaseq/main.nf | 216 +----------------- .../.config.vsh.yaml | 130 +---------- .../rsem/rsem_calculate_expression/main.nf | 216 +----------------- .../rsem_prepare_reference/.config.vsh.yaml | 130 +---------- .../rsem/rsem_prepare_reference/main.nf | 216 +----------------- .../rseqc/rseqc_bamstat/.config.vsh.yaml | 130 +---------- target/nextflow/rseqc/rseqc_bamstat/main.nf | 216 +----------------- .../rseqc_inferexperiment/.config.vsh.yaml | 130 +---------- .../rseqc/rseqc_inferexperiment/main.nf | 216 +----------------- .../rseqc_inner_distance/.config.vsh.yaml | 130 +---------- .../rseqc/rseqc_inner_distance/main.nf | 216 +----------------- .../salmon/salmon_index/.config.vsh.yaml | 130 +---------- target/nextflow/salmon/salmon_index/main.nf | 216 +----------------- .../salmon/salmon_quant/.config.vsh.yaml | 130 +---------- target/nextflow/salmon/salmon_quant/main.nf | 216 +----------------- .../samtools_collate/.config.vsh.yaml | 130 +---------- .../samtools/samtools_collate/main.nf | 216 +----------------- .../samtools/samtools_faidx/.config.vsh.yaml | 130 +---------- .../nextflow/samtools/samtools_faidx/main.nf | 216 +----------------- .../samtools/samtools_fasta/.config.vsh.yaml | 130 +---------- .../nextflow/samtools/samtools_fasta/main.nf | 216 +----------------- .../samtools/samtools_fastq/.config.vsh.yaml | 130 +---------- .../nextflow/samtools/samtools_fastq/main.nf | 216 +----------------- .../samtools_flagstat/.config.vsh.yaml | 130 +---------- .../samtools/samtools_flagstat/main.nf | 216 +----------------- .../samtools_idxstats/.config.vsh.yaml | 130 +---------- .../samtools/samtools_idxstats/main.nf | 216 +----------------- .../samtools/samtools_index/.config.vsh.yaml | 130 +---------- .../nextflow/samtools/samtools_index/main.nf | 216 +----------------- .../samtools/samtools_sort/.config.vsh.yaml | 130 +---------- .../nextflow/samtools/samtools_sort/main.nf | 216 +----------------- .../samtools/samtools_stats/.config.vsh.yaml | 130 +---------- .../nextflow/samtools/samtools_stats/main.nf | 216 +----------------- .../samtools/samtools_view/.config.vsh.yaml | 130 +---------- .../nextflow/samtools/samtools_view/main.nf | 216 +----------------- .../seqtk/seqtk_sample/.config.vsh.yaml | 130 +---------- target/nextflow/seqtk/seqtk_sample/main.nf | 216 +----------------- .../seqtk/seqtk_subseq/.config.vsh.yaml | 130 +---------- target/nextflow/seqtk/seqtk_subseq/main.nf | 216 +----------------- target/nextflow/sgdemux/.config.vsh.yaml | 130 +---------- target/nextflow/sgdemux/main.nf | 216 +----------------- .../snpeff/snpeff_ann/.config.vsh.yaml | 130 +---------- target/nextflow/snpeff/snpeff_ann/main.nf | 216 +----------------- target/nextflow/sortmerna/.config.vsh.yaml | 130 +---------- target/nextflow/sortmerna/main.nf | 216 +----------------- .../star/star_align_reads/.config.vsh.yaml | 130 +---------- target/nextflow/star/star_align_reads/main.nf | 216 +----------------- .../star_genome_generate/.config.vsh.yaml | 130 +---------- .../star/star_genome_generate/main.nf | 216 +----------------- target/nextflow/trimgalore/.config.vsh.yaml | 130 +---------- target/nextflow/trimgalore/main.nf | 216 +----------------- .../umi_tools_dedup/.config.vsh.yaml | 130 +---------- .../umi_tools/umi_tools_dedup/main.nf | 216 +----------------- .../umi_tools_extract/.config.vsh.yaml | 130 +---------- .../umi_tools/umi_tools_extract/main.nf | 216 +----------------- .../umi_tools_prepareforrsem/.config.vsh.yaml | 130 +---------- .../umi_tools_prepareforrsem/main.nf | 216 +----------------- 502 files changed, 639 insertions(+), 59401 deletions(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index 0e09a492..ceeb54b5 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -128,7 +128,7 @@ * Update README (PR #177). -* Add authors to package config and update author information (PR #180). +* Update author information (PR #180, PR #200). * `fastqc`: add `--outdir` argument (PR #181). diff --git a/_viash.yaml b/_viash.yaml index 550412bb..bec422c5 100644 --- a/_viash.yaml +++ b/_viash.yaml @@ -19,31 +19,19 @@ links: issue_tracker: https://github.com/viash-hub/biobox/issues repository: https://github.com/viash-hub/biobox viash_version: 0.9.4 -authors: - - __merge__: /src/_authors/robrecht_cannoodt.yaml - roles: [author, maintainer] - - __merge__: /src/_authors/angela_o_pisco.yaml - roles: [author] - - __merge__: /src/_authors/dorien_roosen.yaml - roles: [author] - - __merge__: /src/_authors/dries_schaumont.yaml - roles: [author] - - __merge__: /src/_authors/emma_rousseau.yaml - roles: [author] - - __merge__: /src/_authors/jakub_majercik.yaml - roles: [author] - - __merge__: /src/_authors/kai_waldrant.yaml - roles: [author] - - __merge__: /src/_authors/leila_paquay.yaml - roles: [author] - - __merge__: /src/_authors/sai_nirmayi_yasa.yaml - roles: [author] - - __merge__: /src/_authors/theodoro_gasperin.yaml - roles: [author] - - __merge__: /src/_authors/toni_verbeiren.yaml - roles: [author] - - __merge__: /src/_authors/weiwei_schultz.yaml - roles: [author] +## TODO: __merge__ properties in the package config could not be loaded by viash-hub. +## Re-enable this again again later once this is supported +# authors: +# - __merge__: /src/_authors/robrecht_cannoodt.yaml +# roles: [ author, maintainer ] +# - __merge__: /src/_authors/dorien_roosen.yaml +# roles: [ author ] +# - __merge__: /src/_authors/dries_schaumont.yaml +# roles: [ author ] +# - __merge__: /src/_authors/jakub_majercik.yaml +# roles: [ author ] +# - __merge__: /src/_authors/toni_verbeiren.yaml +# roles: [ author ] config_mods: | .requirements.commands += ['ps'] organization: vsh diff --git a/target/executable/agat/agat_convert_bed2gff/.config.vsh.yaml b/target/executable/agat/agat_convert_bed2gff/.config.vsh.yaml index 41c6ae96..66175e47 100644 --- a/target/executable/agat/agat_convert_bed2gff/.config.vsh.yaml +++ b/target/executable/agat/agat_convert_bed2gff/.config.vsh.yaml @@ -234,7 +234,7 @@ build_info: output: "target/executable/agat/agat_convert_bed2gff" executable: "target/executable/agat/agat_convert_bed2gff/agat_convert_bed2gff" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -260,134 +260,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/executable/agat/agat_convert_bed2gff/agat_convert_bed2gff b/target/executable/agat/agat_convert_bed2gff/agat_convert_bed2gff index 9d1e0813..45a8ae61 100755 --- a/target/executable/agat/agat_convert_bed2gff/agat_convert_bed2gff +++ b/target/executable/agat/agat_convert_bed2gff/agat_convert_bed2gff @@ -452,9 +452,9 @@ RUN agat --version | sed 's/AGAT\s\(.*\)/agat: "\1"/' > /var/software_versions.t LABEL org.opencontainers.image.authors="Leïla Paquay" LABEL org.opencontainers.image.description="Companion container for running component agat agat_convert_bed2gff" -LABEL org.opencontainers.image.created="2025-09-17T07:30:36Z" +LABEL org.opencontainers.image.created="2025-09-17T08:35:58Z" LABEL org.opencontainers.image.source="https://github.com/NBISweden/AGAT" -LABEL org.opencontainers.image.revision="736f18e9887893ca830612b48744fe312fe3c696" +LABEL org.opencontainers.image.revision="666507c86de9150bfbdffdb2dbabc1dbde3c3262" LABEL org.opencontainers.image.version="v0.4.0" VIASHDOCKER diff --git a/target/executable/agat/agat_convert_embl2gff/.config.vsh.yaml b/target/executable/agat/agat_convert_embl2gff/.config.vsh.yaml index e158f79e..dce41bf5 100644 --- a/target/executable/agat/agat_convert_embl2gff/.config.vsh.yaml +++ b/target/executable/agat/agat_convert_embl2gff/.config.vsh.yaml @@ -224,7 +224,7 @@ build_info: output: "target/executable/agat/agat_convert_embl2gff" executable: "target/executable/agat/agat_convert_embl2gff/agat_convert_embl2gff" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -250,134 +250,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/executable/agat/agat_convert_embl2gff/agat_convert_embl2gff b/target/executable/agat/agat_convert_embl2gff/agat_convert_embl2gff index 167eb37f..10222514 100755 --- a/target/executable/agat/agat_convert_embl2gff/agat_convert_embl2gff +++ b/target/executable/agat/agat_convert_embl2gff/agat_convert_embl2gff @@ -452,9 +452,9 @@ RUN agat --version | sed 's/AGAT\s\(.*\)/agat: "\1"/' > /var/software_versions.t LABEL org.opencontainers.image.authors="Leïla Paquay" LABEL org.opencontainers.image.description="Companion container for running component agat agat_convert_embl2gff" -LABEL org.opencontainers.image.created="2025-09-17T07:30:34Z" +LABEL org.opencontainers.image.created="2025-09-17T08:35:56Z" LABEL org.opencontainers.image.source="https://github.com/NBISweden/AGAT" -LABEL org.opencontainers.image.revision="736f18e9887893ca830612b48744fe312fe3c696" +LABEL org.opencontainers.image.revision="666507c86de9150bfbdffdb2dbabc1dbde3c3262" LABEL org.opencontainers.image.version="v0.4.0" VIASHDOCKER diff --git a/target/executable/agat/agat_convert_genscan2gff/.config.vsh.yaml b/target/executable/agat/agat_convert_genscan2gff/.config.vsh.yaml index 45ceb5d7..9b71b237 100644 --- a/target/executable/agat/agat_convert_genscan2gff/.config.vsh.yaml +++ b/target/executable/agat/agat_convert_genscan2gff/.config.vsh.yaml @@ -229,7 +229,7 @@ build_info: output: "target/executable/agat/agat_convert_genscan2gff" executable: "target/executable/agat/agat_convert_genscan2gff/agat_convert_genscan2gff" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -255,134 +255,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/executable/agat/agat_convert_genscan2gff/agat_convert_genscan2gff b/target/executable/agat/agat_convert_genscan2gff/agat_convert_genscan2gff index ca76a73e..bd87f927 100755 --- a/target/executable/agat/agat_convert_genscan2gff/agat_convert_genscan2gff +++ b/target/executable/agat/agat_convert_genscan2gff/agat_convert_genscan2gff @@ -452,9 +452,9 @@ RUN agat --version | sed 's/AGAT\s\(.*\)/agat: "\1"/' > /var/software_versions.t LABEL org.opencontainers.image.authors="Leïla Paquay" LABEL org.opencontainers.image.description="Companion container for running component agat agat_convert_genscan2gff" -LABEL org.opencontainers.image.created="2025-09-17T07:30:36Z" +LABEL org.opencontainers.image.created="2025-09-17T08:35:58Z" LABEL org.opencontainers.image.source="https://github.com/NBISweden/AGAT" -LABEL org.opencontainers.image.revision="736f18e9887893ca830612b48744fe312fe3c696" +LABEL org.opencontainers.image.revision="666507c86de9150bfbdffdb2dbabc1dbde3c3262" LABEL org.opencontainers.image.version="v0.4.0" VIASHDOCKER diff --git a/target/executable/agat/agat_convert_mfannot2gff/.config.vsh.yaml b/target/executable/agat/agat_convert_mfannot2gff/.config.vsh.yaml index 394748d8..f712b6a9 100644 --- a/target/executable/agat/agat_convert_mfannot2gff/.config.vsh.yaml +++ b/target/executable/agat/agat_convert_mfannot2gff/.config.vsh.yaml @@ -185,7 +185,7 @@ build_info: output: "target/executable/agat/agat_convert_mfannot2gff" executable: "target/executable/agat/agat_convert_mfannot2gff/agat_convert_mfannot2gff" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -211,134 +211,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/executable/agat/agat_convert_mfannot2gff/agat_convert_mfannot2gff b/target/executable/agat/agat_convert_mfannot2gff/agat_convert_mfannot2gff index 49125a08..a65e63cf 100755 --- a/target/executable/agat/agat_convert_mfannot2gff/agat_convert_mfannot2gff +++ b/target/executable/agat/agat_convert_mfannot2gff/agat_convert_mfannot2gff @@ -452,9 +452,9 @@ RUN agat --version | sed 's/AGAT\s\(.*\)/agat: "\1"/' > /var/software_versions.t LABEL org.opencontainers.image.authors="Leïla Paquay" LABEL org.opencontainers.image.description="Companion container for running component agat agat_convert_mfannot2gff" -LABEL org.opencontainers.image.created="2025-09-17T07:30:34Z" +LABEL org.opencontainers.image.created="2025-09-17T08:35:56Z" LABEL org.opencontainers.image.source="https://github.com/NBISweden/AGAT" -LABEL org.opencontainers.image.revision="736f18e9887893ca830612b48744fe312fe3c696" +LABEL org.opencontainers.image.revision="666507c86de9150bfbdffdb2dbabc1dbde3c3262" LABEL org.opencontainers.image.version="v0.4.0" VIASHDOCKER diff --git a/target/executable/agat/agat_convert_sp_gff2gtf/.config.vsh.yaml b/target/executable/agat/agat_convert_sp_gff2gtf/.config.vsh.yaml index 9577f7a1..1a19439e 100644 --- a/target/executable/agat/agat_convert_sp_gff2gtf/.config.vsh.yaml +++ b/target/executable/agat/agat_convert_sp_gff2gtf/.config.vsh.yaml @@ -227,7 +227,7 @@ build_info: output: "target/executable/agat/agat_convert_sp_gff2gtf" executable: "target/executable/agat/agat_convert_sp_gff2gtf/agat_convert_sp_gff2gtf" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -253,134 +253,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/executable/agat/agat_convert_sp_gff2gtf/agat_convert_sp_gff2gtf b/target/executable/agat/agat_convert_sp_gff2gtf/agat_convert_sp_gff2gtf index 90fcee7f..4c37b770 100755 --- a/target/executable/agat/agat_convert_sp_gff2gtf/agat_convert_sp_gff2gtf +++ b/target/executable/agat/agat_convert_sp_gff2gtf/agat_convert_sp_gff2gtf @@ -452,9 +452,9 @@ RUN agat --version | sed 's/AGAT\s\(.*\)/agat: "\1"/' > /var/software_versions.t LABEL org.opencontainers.image.authors="Leïla Paquay" LABEL org.opencontainers.image.description="Companion container for running component agat agat_convert_sp_gff2gtf" -LABEL org.opencontainers.image.created="2025-09-17T07:30:37Z" +LABEL org.opencontainers.image.created="2025-09-17T08:35:59Z" LABEL org.opencontainers.image.source="https://github.com/NBISweden/AGAT" -LABEL org.opencontainers.image.revision="736f18e9887893ca830612b48744fe312fe3c696" +LABEL org.opencontainers.image.revision="666507c86de9150bfbdffdb2dbabc1dbde3c3262" LABEL org.opencontainers.image.version="v0.4.0" VIASHDOCKER diff --git a/target/executable/agat/agat_convert_sp_gff2tsv/.config.vsh.yaml b/target/executable/agat/agat_convert_sp_gff2tsv/.config.vsh.yaml index 625852b7..f35cb628 100644 --- a/target/executable/agat/agat_convert_sp_gff2tsv/.config.vsh.yaml +++ b/target/executable/agat/agat_convert_sp_gff2tsv/.config.vsh.yaml @@ -187,7 +187,7 @@ build_info: output: "target/executable/agat/agat_convert_sp_gff2tsv" executable: "target/executable/agat/agat_convert_sp_gff2tsv/agat_convert_sp_gff2tsv" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -213,134 +213,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/executable/agat/agat_convert_sp_gff2tsv/agat_convert_sp_gff2tsv b/target/executable/agat/agat_convert_sp_gff2tsv/agat_convert_sp_gff2tsv index afe97668..7ea6c0c3 100755 --- a/target/executable/agat/agat_convert_sp_gff2tsv/agat_convert_sp_gff2tsv +++ b/target/executable/agat/agat_convert_sp_gff2tsv/agat_convert_sp_gff2tsv @@ -452,9 +452,9 @@ RUN agat --version | sed 's/AGAT\s\(.*\)/agat: "\1"/' > /var/software_versions.t LABEL org.opencontainers.image.authors="Leïla Paquay" LABEL org.opencontainers.image.description="Companion container for running component agat agat_convert_sp_gff2tsv" -LABEL org.opencontainers.image.created="2025-09-17T07:30:35Z" +LABEL org.opencontainers.image.created="2025-09-17T08:35:57Z" LABEL org.opencontainers.image.source="https://github.com/NBISweden/AGAT" -LABEL org.opencontainers.image.revision="736f18e9887893ca830612b48744fe312fe3c696" +LABEL org.opencontainers.image.revision="666507c86de9150bfbdffdb2dbabc1dbde3c3262" LABEL org.opencontainers.image.version="v0.4.0" VIASHDOCKER diff --git a/target/executable/agat/agat_convert_sp_gxf2gxf/.config.vsh.yaml b/target/executable/agat/agat_convert_sp_gxf2gxf/.config.vsh.yaml index f22ab0e5..d4afa8d0 100644 --- a/target/executable/agat/agat_convert_sp_gxf2gxf/.config.vsh.yaml +++ b/target/executable/agat/agat_convert_sp_gxf2gxf/.config.vsh.yaml @@ -194,7 +194,7 @@ build_info: output: "target/executable/agat/agat_convert_sp_gxf2gxf" executable: "target/executable/agat/agat_convert_sp_gxf2gxf/agat_convert_sp_gxf2gxf" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -220,134 +220,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/executable/agat/agat_convert_sp_gxf2gxf/agat_convert_sp_gxf2gxf b/target/executable/agat/agat_convert_sp_gxf2gxf/agat_convert_sp_gxf2gxf index 763a42f6..0c9f9a3d 100755 --- a/target/executable/agat/agat_convert_sp_gxf2gxf/agat_convert_sp_gxf2gxf +++ b/target/executable/agat/agat_convert_sp_gxf2gxf/agat_convert_sp_gxf2gxf @@ -452,9 +452,9 @@ RUN agat --version | sed 's/AGAT\s\(.*\)/agat: "\1"/' > /var/software_versions.t LABEL org.opencontainers.image.authors="Leïla Paquay" LABEL org.opencontainers.image.description="Companion container for running component agat agat_convert_sp_gxf2gxf" -LABEL org.opencontainers.image.created="2025-09-17T07:30:35Z" +LABEL org.opencontainers.image.created="2025-09-17T08:35:57Z" LABEL org.opencontainers.image.source="https://github.com/NBISweden/AGAT" -LABEL org.opencontainers.image.revision="736f18e9887893ca830612b48744fe312fe3c696" +LABEL org.opencontainers.image.revision="666507c86de9150bfbdffdb2dbabc1dbde3c3262" LABEL org.opencontainers.image.version="v0.4.0" VIASHDOCKER diff --git a/target/executable/agat/agat_sp_add_introns/.config.vsh.yaml b/target/executable/agat/agat_sp_add_introns/.config.vsh.yaml index 1c63d7c8..ff88ca21 100644 --- a/target/executable/agat/agat_sp_add_introns/.config.vsh.yaml +++ b/target/executable/agat/agat_sp_add_introns/.config.vsh.yaml @@ -185,7 +185,7 @@ build_info: output: "target/executable/agat/agat_sp_add_introns" executable: "target/executable/agat/agat_sp_add_introns/agat_sp_add_introns" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -211,134 +211,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/executable/agat/agat_sp_add_introns/agat_sp_add_introns b/target/executable/agat/agat_sp_add_introns/agat_sp_add_introns index 5530c28c..aabb7dbf 100755 --- a/target/executable/agat/agat_sp_add_introns/agat_sp_add_introns +++ b/target/executable/agat/agat_sp_add_introns/agat_sp_add_introns @@ -452,9 +452,9 @@ RUN agat --version | sed 's/AGAT\s\(.*\)/agat: "\1"/' > /var/software_versions.t LABEL org.opencontainers.image.authors="Leïla Paquay" LABEL org.opencontainers.image.description="Companion container for running component agat agat_sp_add_introns" -LABEL org.opencontainers.image.created="2025-09-17T07:30:34Z" +LABEL org.opencontainers.image.created="2025-09-17T08:35:56Z" LABEL org.opencontainers.image.source="https://github.com/NBISweden/AGAT" -LABEL org.opencontainers.image.revision="736f18e9887893ca830612b48744fe312fe3c696" +LABEL org.opencontainers.image.revision="666507c86de9150bfbdffdb2dbabc1dbde3c3262" LABEL org.opencontainers.image.version="v0.4.0" VIASHDOCKER diff --git a/target/executable/agat/agat_sp_filter_feature_from_kill_list/.config.vsh.yaml b/target/executable/agat/agat_sp_filter_feature_from_kill_list/.config.vsh.yaml index cf2c3ea2..b5035cdb 100644 --- a/target/executable/agat/agat_sp_filter_feature_from_kill_list/.config.vsh.yaml +++ b/target/executable/agat/agat_sp_filter_feature_from_kill_list/.config.vsh.yaml @@ -235,7 +235,7 @@ build_info: output: "target/executable/agat/agat_sp_filter_feature_from_kill_list" executable: "target/executable/agat/agat_sp_filter_feature_from_kill_list/agat_sp_filter_feature_from_kill_list" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -261,134 +261,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/executable/agat/agat_sp_filter_feature_from_kill_list/agat_sp_filter_feature_from_kill_list b/target/executable/agat/agat_sp_filter_feature_from_kill_list/agat_sp_filter_feature_from_kill_list index 52383f48..03fc42c6 100755 --- a/target/executable/agat/agat_sp_filter_feature_from_kill_list/agat_sp_filter_feature_from_kill_list +++ b/target/executable/agat/agat_sp_filter_feature_from_kill_list/agat_sp_filter_feature_from_kill_list @@ -452,9 +452,9 @@ RUN agat --version | sed 's/AGAT\s\(.*\)/agat: "\1"/' > /var/software_versions.t LABEL org.opencontainers.image.authors="Leïla Paquay" LABEL org.opencontainers.image.description="Companion container for running component agat agat_sp_filter_feature_from_kill_list" -LABEL org.opencontainers.image.created="2025-09-17T07:30:36Z" +LABEL org.opencontainers.image.created="2025-09-17T08:35:58Z" LABEL org.opencontainers.image.source="https://github.com/NBISweden/AGAT" -LABEL org.opencontainers.image.revision="736f18e9887893ca830612b48744fe312fe3c696" +LABEL org.opencontainers.image.revision="666507c86de9150bfbdffdb2dbabc1dbde3c3262" LABEL org.opencontainers.image.version="v0.4.0" VIASHDOCKER diff --git a/target/executable/agat/agat_sp_merge_annotations/.config.vsh.yaml b/target/executable/agat/agat_sp_merge_annotations/.config.vsh.yaml index 13f4e51e..cea7745d 100644 --- a/target/executable/agat/agat_sp_merge_annotations/.config.vsh.yaml +++ b/target/executable/agat/agat_sp_merge_annotations/.config.vsh.yaml @@ -183,7 +183,7 @@ build_info: output: "target/executable/agat/agat_sp_merge_annotations" executable: "target/executable/agat/agat_sp_merge_annotations/agat_sp_merge_annotations" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -209,134 +209,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/executable/agat/agat_sp_merge_annotations/agat_sp_merge_annotations b/target/executable/agat/agat_sp_merge_annotations/agat_sp_merge_annotations index 370dbb64..7c0d95c9 100755 --- a/target/executable/agat/agat_sp_merge_annotations/agat_sp_merge_annotations +++ b/target/executable/agat/agat_sp_merge_annotations/agat_sp_merge_annotations @@ -452,9 +452,9 @@ RUN agat --version | sed 's/AGAT\s\(.*\)/agat: "\1"/' > /var/software_versions.t LABEL org.opencontainers.image.authors="Leïla Paquay" LABEL org.opencontainers.image.description="Companion container for running component agat agat_sp_merge_annotations" -LABEL org.opencontainers.image.created="2025-09-17T07:30:35Z" +LABEL org.opencontainers.image.created="2025-09-17T08:35:57Z" LABEL org.opencontainers.image.source="https://github.com/NBISweden/AGAT" -LABEL org.opencontainers.image.revision="736f18e9887893ca830612b48744fe312fe3c696" +LABEL org.opencontainers.image.revision="666507c86de9150bfbdffdb2dbabc1dbde3c3262" LABEL org.opencontainers.image.version="v0.4.0" VIASHDOCKER diff --git a/target/executable/agat/agat_sp_statistics/.config.vsh.yaml b/target/executable/agat/agat_sp_statistics/.config.vsh.yaml index fb35f150..85061866 100644 --- a/target/executable/agat/agat_sp_statistics/.config.vsh.yaml +++ b/target/executable/agat/agat_sp_statistics/.config.vsh.yaml @@ -230,7 +230,7 @@ build_info: output: "target/executable/agat/agat_sp_statistics" executable: "target/executable/agat/agat_sp_statistics/agat_sp_statistics" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -256,134 +256,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/executable/agat/agat_sp_statistics/agat_sp_statistics b/target/executable/agat/agat_sp_statistics/agat_sp_statistics index 9fef153e..dcba8e19 100755 --- a/target/executable/agat/agat_sp_statistics/agat_sp_statistics +++ b/target/executable/agat/agat_sp_statistics/agat_sp_statistics @@ -452,9 +452,9 @@ RUN agat --version | sed 's/.*v\.//; s/\s.*//' | sed 's/^/AGAT: /' > /var/softwa LABEL org.opencontainers.image.authors="Leïla Paquay" LABEL org.opencontainers.image.description="Companion container for running component agat agat_sp_statistics" -LABEL org.opencontainers.image.created="2025-09-17T07:30:36Z" +LABEL org.opencontainers.image.created="2025-09-17T08:35:58Z" LABEL org.opencontainers.image.source="https://github.com/NBISweden/AGAT" -LABEL org.opencontainers.image.revision="736f18e9887893ca830612b48744fe312fe3c696" +LABEL org.opencontainers.image.revision="666507c86de9150bfbdffdb2dbabc1dbde3c3262" LABEL org.opencontainers.image.version="v0.4.0" VIASHDOCKER diff --git a/target/executable/agat/agat_sq_stat_basic/.config.vsh.yaml b/target/executable/agat/agat_sq_stat_basic/.config.vsh.yaml index 5343b0cc..dbf2f993 100644 --- a/target/executable/agat/agat_sq_stat_basic/.config.vsh.yaml +++ b/target/executable/agat/agat_sq_stat_basic/.config.vsh.yaml @@ -226,7 +226,7 @@ build_info: output: "target/executable/agat/agat_sq_stat_basic" executable: "target/executable/agat/agat_sq_stat_basic/agat_sq_stat_basic" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -252,134 +252,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/executable/agat/agat_sq_stat_basic/agat_sq_stat_basic b/target/executable/agat/agat_sq_stat_basic/agat_sq_stat_basic index e23e20cc..e0ce92b0 100755 --- a/target/executable/agat/agat_sq_stat_basic/agat_sq_stat_basic +++ b/target/executable/agat/agat_sq_stat_basic/agat_sq_stat_basic @@ -452,9 +452,9 @@ RUN agat --version | sed 's/AGAT\s\(.*\)/agat: "\1"/' > /var/software_versions.t LABEL org.opencontainers.image.authors="Leïla Paquay" LABEL org.opencontainers.image.description="Companion container for running component agat agat_sq_stat_basic" -LABEL org.opencontainers.image.created="2025-09-17T07:30:35Z" +LABEL org.opencontainers.image.created="2025-09-17T08:35:57Z" LABEL org.opencontainers.image.source="https://github.com/NBISweden/AGAT" -LABEL org.opencontainers.image.revision="736f18e9887893ca830612b48744fe312fe3c696" +LABEL org.opencontainers.image.revision="666507c86de9150bfbdffdb2dbabc1dbde3c3262" LABEL org.opencontainers.image.version="v0.4.0" VIASHDOCKER diff --git a/target/executable/arriba/.config.vsh.yaml b/target/executable/arriba/.config.vsh.yaml index 4b448985..e2a6497d 100644 --- a/target/executable/arriba/.config.vsh.yaml +++ b/target/executable/arriba/.config.vsh.yaml @@ -729,7 +729,7 @@ build_info: output: "target/executable/arriba" executable: "target/executable/arriba/arriba" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -755,134 +755,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/executable/arriba/arriba b/target/executable/arriba/arriba index eed4531e..13e53318 100755 --- a/target/executable/arriba/arriba +++ b/target/executable/arriba/arriba @@ -452,9 +452,9 @@ RUN arriba -h 2>&1 | head -5 | grep 'Version:' | sed 's/Version:\s\(.*\)/arriba: LABEL org.opencontainers.image.authors="Robrecht Cannoodt" LABEL org.opencontainers.image.description="Companion container for running component arriba" -LABEL org.opencontainers.image.created="2025-09-17T07:30:41Z" +LABEL org.opencontainers.image.created="2025-09-17T08:36:03Z" LABEL org.opencontainers.image.source="https://github.com/suhrig/arriba" -LABEL org.opencontainers.image.revision="736f18e9887893ca830612b48744fe312fe3c696" +LABEL org.opencontainers.image.revision="666507c86de9150bfbdffdb2dbabc1dbde3c3262" LABEL org.opencontainers.image.version="v0.4.0" VIASHDOCKER diff --git a/target/executable/bases2fastq/.config.vsh.yaml b/target/executable/bases2fastq/.config.vsh.yaml index 80a69586..42cefde0 100644 --- a/target/executable/bases2fastq/.config.vsh.yaml +++ b/target/executable/bases2fastq/.config.vsh.yaml @@ -452,7 +452,7 @@ build_info: output: "target/executable/bases2fastq" executable: "target/executable/bases2fastq/bases2fastq" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -478,134 +478,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/executable/bases2fastq/bases2fastq b/target/executable/bases2fastq/bases2fastq index ca414bde..a8f9502e 100755 --- a/target/executable/bases2fastq/bases2fastq +++ b/target/executable/bases2fastq/bases2fastq @@ -452,9 +452,9 @@ RUN bases2fastq --version 2>&1 | head -1 | sed 's/.*version \([0-9\\.]*\).*/base LABEL org.opencontainers.image.authors="Dries Schaumont" LABEL org.opencontainers.image.description="Companion container for running component bases2fastq" -LABEL org.opencontainers.image.created="2025-09-17T07:30:38Z" +LABEL org.opencontainers.image.created="2025-09-17T08:36:00Z" LABEL org.opencontainers.image.source="https://github.com/Illumina/bases2fastq" -LABEL org.opencontainers.image.revision="736f18e9887893ca830612b48744fe312fe3c696" +LABEL org.opencontainers.image.revision="666507c86de9150bfbdffdb2dbabc1dbde3c3262" LABEL org.opencontainers.image.version="v0.4.0" VIASHDOCKER diff --git a/target/executable/bbmap/bbmap_bbsplit/.config.vsh.yaml b/target/executable/bbmap/bbmap_bbsplit/.config.vsh.yaml index 3ded7c6c..e86fd775 100644 --- a/target/executable/bbmap/bbmap_bbsplit/.config.vsh.yaml +++ b/target/executable/bbmap/bbmap_bbsplit/.config.vsh.yaml @@ -371,7 +371,7 @@ build_info: output: "target/executable/bbmap/bbmap_bbsplit" executable: "target/executable/bbmap/bbmap_bbsplit/bbmap_bbsplit" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -397,134 +397,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/executable/bbmap/bbmap_bbsplit/bbmap_bbsplit b/target/executable/bbmap/bbmap_bbsplit/bbmap_bbsplit index f6ba5c83..68a63084 100755 --- a/target/executable/bbmap/bbmap_bbsplit/bbmap_bbsplit +++ b/target/executable/bbmap/bbmap_bbsplit/bbmap_bbsplit @@ -454,9 +454,9 @@ cp -r bbmap/* /usr/local/bin RUN bbsplit.sh --version 2>&1 | awk '/BBMap version/{print "BBMAP:", $NF}' > /var/software_versions.txt LABEL org.opencontainers.image.description="Companion container for running component bbmap bbmap_bbsplit" -LABEL org.opencontainers.image.created="2025-09-17T07:30:39Z" +LABEL org.opencontainers.image.created="2025-09-17T08:36:01Z" LABEL org.opencontainers.image.source="https://github.com/BioInfoTools/BBMap/blob/master/sh/bbsplit.sh" -LABEL org.opencontainers.image.revision="736f18e9887893ca830612b48744fe312fe3c696" +LABEL org.opencontainers.image.revision="666507c86de9150bfbdffdb2dbabc1dbde3c3262" LABEL org.opencontainers.image.version="v0.4.0" VIASHDOCKER diff --git a/target/executable/bcftools/bcftools_annotate/.config.vsh.yaml b/target/executable/bcftools/bcftools_annotate/.config.vsh.yaml index f883d987..c67774cd 100644 --- a/target/executable/bcftools/bcftools_annotate/.config.vsh.yaml +++ b/target/executable/bcftools/bcftools_annotate/.config.vsh.yaml @@ -471,7 +471,7 @@ build_info: output: "target/executable/bcftools/bcftools_annotate" executable: "target/executable/bcftools/bcftools_annotate/bcftools_annotate" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -497,134 +497,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/executable/bcftools/bcftools_annotate/bcftools_annotate b/target/executable/bcftools/bcftools_annotate/bcftools_annotate index 50bf59b8..1eb7ba49 100755 --- a/target/executable/bcftools/bcftools_annotate/bcftools_annotate +++ b/target/executable/bcftools/bcftools_annotate/bcftools_annotate @@ -452,9 +452,9 @@ RUN echo "bcftools: \"$(bcftools --version | grep 'bcftools' | sed -n 's/^bcftoo LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo" LABEL org.opencontainers.image.description="Companion container for running component bcftools bcftools_annotate" -LABEL org.opencontainers.image.created="2025-09-17T07:30:34Z" +LABEL org.opencontainers.image.created="2025-09-17T08:35:56Z" LABEL org.opencontainers.image.source="https://github.com/samtools/bcftools" -LABEL org.opencontainers.image.revision="736f18e9887893ca830612b48744fe312fe3c696" +LABEL org.opencontainers.image.revision="666507c86de9150bfbdffdb2dbabc1dbde3c3262" LABEL org.opencontainers.image.version="v0.4.0" VIASHDOCKER diff --git a/target/executable/bcftools/bcftools_concat/.config.vsh.yaml b/target/executable/bcftools/bcftools_concat/.config.vsh.yaml index 856e5f74..ba5460bb 100644 --- a/target/executable/bcftools/bcftools_concat/.config.vsh.yaml +++ b/target/executable/bcftools/bcftools_concat/.config.vsh.yaml @@ -384,7 +384,7 @@ build_info: output: "target/executable/bcftools/bcftools_concat" executable: "target/executable/bcftools/bcftools_concat/bcftools_concat" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -410,134 +410,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/executable/bcftools/bcftools_concat/bcftools_concat b/target/executable/bcftools/bcftools_concat/bcftools_concat index 700945f5..48d981a0 100755 --- a/target/executable/bcftools/bcftools_concat/bcftools_concat +++ b/target/executable/bcftools/bcftools_concat/bcftools_concat @@ -452,9 +452,9 @@ RUN bcftools --version 2>&1 | head -1 | sed 's/bcftools /bcftools: /' > /var/sof LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo" LABEL org.opencontainers.image.description="Companion container for running component bcftools bcftools_concat" -LABEL org.opencontainers.image.created="2025-09-17T07:30:34Z" +LABEL org.opencontainers.image.created="2025-09-17T08:35:56Z" LABEL org.opencontainers.image.source="https://github.com/samtools/bcftools" -LABEL org.opencontainers.image.revision="736f18e9887893ca830612b48744fe312fe3c696" +LABEL org.opencontainers.image.revision="666507c86de9150bfbdffdb2dbabc1dbde3c3262" LABEL org.opencontainers.image.version="v0.4.0" VIASHDOCKER diff --git a/target/executable/bcftools/bcftools_norm/.config.vsh.yaml b/target/executable/bcftools/bcftools_norm/.config.vsh.yaml index 24b45092..2d483a02 100644 --- a/target/executable/bcftools/bcftools_norm/.config.vsh.yaml +++ b/target/executable/bcftools/bcftools_norm/.config.vsh.yaml @@ -544,7 +544,7 @@ build_info: output: "target/executable/bcftools/bcftools_norm" executable: "target/executable/bcftools/bcftools_norm/bcftools_norm" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -570,134 +570,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/executable/bcftools/bcftools_norm/bcftools_norm b/target/executable/bcftools/bcftools_norm/bcftools_norm index ce5adc15..cc2a6d78 100755 --- a/target/executable/bcftools/bcftools_norm/bcftools_norm +++ b/target/executable/bcftools/bcftools_norm/bcftools_norm @@ -452,9 +452,9 @@ RUN bcftools --version 2>&1 | head -1 | sed 's/bcftools /bcftools: /' > /var/sof LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo" LABEL org.opencontainers.image.description="Companion container for running component bcftools bcftools_norm" -LABEL org.opencontainers.image.created="2025-09-17T07:30:34Z" +LABEL org.opencontainers.image.created="2025-09-17T08:35:56Z" LABEL org.opencontainers.image.source="https://github.com/samtools/bcftools" -LABEL org.opencontainers.image.revision="736f18e9887893ca830612b48744fe312fe3c696" +LABEL org.opencontainers.image.revision="666507c86de9150bfbdffdb2dbabc1dbde3c3262" LABEL org.opencontainers.image.version="v0.4.0" VIASHDOCKER diff --git a/target/executable/bcftools/bcftools_sort/.config.vsh.yaml b/target/executable/bcftools/bcftools_sort/.config.vsh.yaml index 58c10ab2..2a53da7b 100644 --- a/target/executable/bcftools/bcftools_sort/.config.vsh.yaml +++ b/target/executable/bcftools/bcftools_sort/.config.vsh.yaml @@ -204,7 +204,7 @@ build_info: output: "target/executable/bcftools/bcftools_sort" executable: "target/executable/bcftools/bcftools_sort/bcftools_sort" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -230,134 +230,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/executable/bcftools/bcftools_sort/bcftools_sort b/target/executable/bcftools/bcftools_sort/bcftools_sort index ecacde7b..89e80866 100755 --- a/target/executable/bcftools/bcftools_sort/bcftools_sort +++ b/target/executable/bcftools/bcftools_sort/bcftools_sort @@ -452,9 +452,9 @@ RUN bcftools --version 2>&1 | head -1 | sed 's/bcftools /bcftools: /' > /var/sof LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo" LABEL org.opencontainers.image.description="Companion container for running component bcftools bcftools_sort" -LABEL org.opencontainers.image.created="2025-09-17T07:30:35Z" +LABEL org.opencontainers.image.created="2025-09-17T08:35:57Z" LABEL org.opencontainers.image.source="https://github.com/samtools/bcftools" -LABEL org.opencontainers.image.revision="736f18e9887893ca830612b48744fe312fe3c696" +LABEL org.opencontainers.image.revision="666507c86de9150bfbdffdb2dbabc1dbde3c3262" LABEL org.opencontainers.image.version="v0.4.0" VIASHDOCKER diff --git a/target/executable/bcftools/bcftools_stats/.config.vsh.yaml b/target/executable/bcftools/bcftools_stats/.config.vsh.yaml index 531fa05d..8a64533d 100644 --- a/target/executable/bcftools/bcftools_stats/.config.vsh.yaml +++ b/target/executable/bcftools/bcftools_stats/.config.vsh.yaml @@ -430,7 +430,7 @@ build_info: output: "target/executable/bcftools/bcftools_stats" executable: "target/executable/bcftools/bcftools_stats/bcftools_stats" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -456,134 +456,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/executable/bcftools/bcftools_stats/bcftools_stats b/target/executable/bcftools/bcftools_stats/bcftools_stats index c27f6a10..67c445ee 100755 --- a/target/executable/bcftools/bcftools_stats/bcftools_stats +++ b/target/executable/bcftools/bcftools_stats/bcftools_stats @@ -452,9 +452,9 @@ RUN bcftools --version | head -1 | sed 's/bcftools /bcftools: /' > /var/software LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo" LABEL org.opencontainers.image.description="Companion container for running component bcftools bcftools_stats" -LABEL org.opencontainers.image.created="2025-09-17T07:30:34Z" +LABEL org.opencontainers.image.created="2025-09-17T08:35:56Z" LABEL org.opencontainers.image.source="https://github.com/samtools/bcftools" -LABEL org.opencontainers.image.revision="736f18e9887893ca830612b48744fe312fe3c696" +LABEL org.opencontainers.image.revision="666507c86de9150bfbdffdb2dbabc1dbde3c3262" LABEL org.opencontainers.image.version="v0.4.0" VIASHDOCKER diff --git a/target/executable/bcl_convert/.config.vsh.yaml b/target/executable/bcl_convert/.config.vsh.yaml index e6533b37..60fd1633 100644 --- a/target/executable/bcl_convert/.config.vsh.yaml +++ b/target/executable/bcl_convert/.config.vsh.yaml @@ -431,7 +431,7 @@ build_info: output: "target/executable/bcl_convert" executable: "target/executable/bcl_convert/bcl_convert" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -457,134 +457,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/executable/bcl_convert/bcl_convert b/target/executable/bcl_convert/bcl_convert index de9a5d2f..6c35cdeb 100755 --- a/target/executable/bcl_convert/bcl_convert +++ b/target/executable/bcl_convert/bcl_convert @@ -462,9 +462,9 @@ RUN echo "bcl-convert: \"$(bcl-convert -V 2>&1 >/dev/null | sed -n '/Version/ s/ LABEL org.opencontainers.image.authors="Toni Verbeiren, Dorien Roosen" LABEL org.opencontainers.image.description="Companion container for running component bcl_convert" -LABEL org.opencontainers.image.created="2025-09-17T07:30:39Z" +LABEL org.opencontainers.image.created="2025-09-17T08:36:01Z" LABEL org.opencontainers.image.source="https://github.com/viash-hub/biobox" -LABEL org.opencontainers.image.revision="736f18e9887893ca830612b48744fe312fe3c696" +LABEL org.opencontainers.image.revision="666507c86de9150bfbdffdb2dbabc1dbde3c3262" LABEL org.opencontainers.image.version="v0.4.0" VIASHDOCKER diff --git a/target/executable/bd_rhapsody/bd_rhapsody_make_reference/.config.vsh.yaml b/target/executable/bd_rhapsody/bd_rhapsody_make_reference/.config.vsh.yaml index f9ba2ecf..70280295 100644 --- a/target/executable/bd_rhapsody/bd_rhapsody_make_reference/.config.vsh.yaml +++ b/target/executable/bd_rhapsody/bd_rhapsody_make_reference/.config.vsh.yaml @@ -280,7 +280,7 @@ build_info: output: "target/executable/bd_rhapsody/bd_rhapsody_make_reference" executable: "target/executable/bd_rhapsody/bd_rhapsody_make_reference/bd_rhapsody_make_reference" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -306,134 +306,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/executable/bd_rhapsody/bd_rhapsody_make_reference/bd_rhapsody_make_reference b/target/executable/bd_rhapsody/bd_rhapsody_make_reference/bd_rhapsody_make_reference index b2fe7f51..931e63d3 100755 --- a/target/executable/bd_rhapsody/bd_rhapsody_make_reference/bd_rhapsody_make_reference +++ b/target/executable/bd_rhapsody/bd_rhapsody_make_reference/bd_rhapsody_make_reference @@ -465,9 +465,9 @@ RUN VERSION=$(ls -v /var/bd_rhapsody_cwl | grep '^v' | sed 's#v##' | tail -1) RUN echo "bdgenomics/rhapsody: \"$VERSION\"" > /var/software_versions.txt LABEL org.opencontainers.image.authors="Robrecht Cannoodt, Weiwei Schultz" LABEL org.opencontainers.image.description="Companion container for running component bd_rhapsody bd_rhapsody_make_reference" -LABEL org.opencontainers.image.created="2025-09-17T07:30:32Z" +LABEL org.opencontainers.image.created="2025-09-17T08:35:54Z" LABEL org.opencontainers.image.source="https://bitbucket.org/CRSwDev/cwl/src/master/v2.2.1/Extra_Utilities/" -LABEL org.opencontainers.image.revision="736f18e9887893ca830612b48744fe312fe3c696" +LABEL org.opencontainers.image.revision="666507c86de9150bfbdffdb2dbabc1dbde3c3262" LABEL org.opencontainers.image.version="v0.4.0" VIASHDOCKER diff --git a/target/executable/bd_rhapsody/bd_rhapsody_sequence_analysis/.config.vsh.yaml b/target/executable/bd_rhapsody/bd_rhapsody_sequence_analysis/.config.vsh.yaml index 1e472ac1..d33cb0c9 100644 --- a/target/executable/bd_rhapsody/bd_rhapsody_sequence_analysis/.config.vsh.yaml +++ b/target/executable/bd_rhapsody/bd_rhapsody_sequence_analysis/.config.vsh.yaml @@ -1121,7 +1121,7 @@ build_info: output: "target/executable/bd_rhapsody/bd_rhapsody_sequence_analysis" executable: "target/executable/bd_rhapsody/bd_rhapsody_sequence_analysis/bd_rhapsody_sequence_analysis" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -1147,134 +1147,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/executable/bd_rhapsody/bd_rhapsody_sequence_analysis/bd_rhapsody_sequence_analysis b/target/executable/bd_rhapsody/bd_rhapsody_sequence_analysis/bd_rhapsody_sequence_analysis index 328facb9..30943930 100755 --- a/target/executable/bd_rhapsody/bd_rhapsody_sequence_analysis/bd_rhapsody_sequence_analysis +++ b/target/executable/bd_rhapsody/bd_rhapsody_sequence_analysis/bd_rhapsody_sequence_analysis @@ -465,9 +465,9 @@ RUN VERSION=$(ls -v /var/bd_rhapsody_cwl | grep '^v' | sed 's#v##' | tail -1) RUN echo "bdgenomics/rhapsody: \"$VERSION\"" > /var/software_versions.txt LABEL org.opencontainers.image.authors="Robrecht Cannoodt, Weiwei Schultz" LABEL org.opencontainers.image.description="Companion container for running component bd_rhapsody bd_rhapsody_sequence_analysis" -LABEL org.opencontainers.image.created="2025-09-17T07:30:32Z" +LABEL org.opencontainers.image.created="2025-09-17T08:35:54Z" LABEL org.opencontainers.image.source="https://bitbucket.org/CRSwDev/cwl/src/master/v2.2.1" -LABEL org.opencontainers.image.revision="736f18e9887893ca830612b48744fe312fe3c696" +LABEL org.opencontainers.image.revision="666507c86de9150bfbdffdb2dbabc1dbde3c3262" LABEL org.opencontainers.image.version="v0.4.0" VIASHDOCKER diff --git a/target/executable/bedtools/bedtools_annotate/.config.vsh.yaml b/target/executable/bedtools/bedtools_annotate/.config.vsh.yaml index 85c53f6b..6f342003 100644 --- a/target/executable/bedtools/bedtools_annotate/.config.vsh.yaml +++ b/target/executable/bedtools/bedtools_annotate/.config.vsh.yaml @@ -247,7 +247,7 @@ build_info: output: "target/executable/bedtools/bedtools_annotate" executable: "target/executable/bedtools/bedtools_annotate/bedtools_annotate" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -273,134 +273,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/executable/bedtools/bedtools_annotate/bedtools_annotate b/target/executable/bedtools/bedtools_annotate/bedtools_annotate index 40fceb14..882b17cf 100755 --- a/target/executable/bedtools/bedtools_annotate/bedtools_annotate +++ b/target/executable/bedtools/bedtools_annotate/bedtools_annotate @@ -451,9 +451,9 @@ ENTRYPOINT [] RUN bedtools --version 2>&1 | head -1 | sed 's/.*bedtools v/bedtools: /' > /var/software_versions.txt LABEL org.opencontainers.image.authors="Robrecht Cannoodt" LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_annotate" -LABEL org.opencontainers.image.created="2025-09-17T07:30:44Z" +LABEL org.opencontainers.image.created="2025-09-17T08:36:06Z" LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2" -LABEL org.opencontainers.image.revision="736f18e9887893ca830612b48744fe312fe3c696" +LABEL org.opencontainers.image.revision="666507c86de9150bfbdffdb2dbabc1dbde3c3262" LABEL org.opencontainers.image.version="v0.4.0" VIASHDOCKER diff --git a/target/executable/bedtools/bedtools_bamtobed/.config.vsh.yaml b/target/executable/bedtools/bedtools_bamtobed/.config.vsh.yaml index 6d689e3f..2c3dfb34 100644 --- a/target/executable/bedtools/bedtools_bamtobed/.config.vsh.yaml +++ b/target/executable/bedtools/bedtools_bamtobed/.config.vsh.yaml @@ -266,7 +266,7 @@ build_info: output: "target/executable/bedtools/bedtools_bamtobed" executable: "target/executable/bedtools/bedtools_bamtobed/bedtools_bamtobed" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -292,134 +292,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/executable/bedtools/bedtools_bamtobed/bedtools_bamtobed b/target/executable/bedtools/bedtools_bamtobed/bedtools_bamtobed index 377227aa..260a0b51 100755 --- a/target/executable/bedtools/bedtools_bamtobed/bedtools_bamtobed +++ b/target/executable/bedtools/bedtools_bamtobed/bedtools_bamtobed @@ -452,9 +452,9 @@ ENTRYPOINT [] RUN bedtools --version 2>&1 | head -1 | sed 's/.*bedtools v/bedtools: /' > /var/software_versions.txt LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo, Robrecht Cannoodt" LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_bamtobed" -LABEL org.opencontainers.image.created="2025-09-17T07:30:40Z" +LABEL org.opencontainers.image.created="2025-09-17T08:36:02Z" LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2" -LABEL org.opencontainers.image.revision="736f18e9887893ca830612b48744fe312fe3c696" +LABEL org.opencontainers.image.revision="666507c86de9150bfbdffdb2dbabc1dbde3c3262" LABEL org.opencontainers.image.version="v0.4.0" VIASHDOCKER diff --git a/target/executable/bedtools/bedtools_bamtofastq/.config.vsh.yaml b/target/executable/bedtools/bedtools_bamtofastq/.config.vsh.yaml index 791557bf..6fe7d153 100644 --- a/target/executable/bedtools/bedtools_bamtofastq/.config.vsh.yaml +++ b/target/executable/bedtools/bedtools_bamtofastq/.config.vsh.yaml @@ -211,7 +211,7 @@ build_info: output: "target/executable/bedtools/bedtools_bamtofastq" executable: "target/executable/bedtools/bedtools_bamtofastq/bedtools_bamtofastq" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -237,134 +237,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/executable/bedtools/bedtools_bamtofastq/bedtools_bamtofastq b/target/executable/bedtools/bedtools_bamtofastq/bedtools_bamtofastq index 51608538..38f43035 100755 --- a/target/executable/bedtools/bedtools_bamtofastq/bedtools_bamtofastq +++ b/target/executable/bedtools/bedtools_bamtofastq/bedtools_bamtofastq @@ -452,9 +452,9 @@ ENTRYPOINT [] RUN bedtools --version 2>&1 | head -1 | sed 's/.*bedtools v/bedtools: /' > /var/software_versions.txt LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo, Robrecht Cannoodt" LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_bamtofastq" -LABEL org.opencontainers.image.created="2025-09-17T07:30:41Z" +LABEL org.opencontainers.image.created="2025-09-17T08:36:03Z" LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2" -LABEL org.opencontainers.image.revision="736f18e9887893ca830612b48744fe312fe3c696" +LABEL org.opencontainers.image.revision="666507c86de9150bfbdffdb2dbabc1dbde3c3262" LABEL org.opencontainers.image.version="v0.4.0" VIASHDOCKER diff --git a/target/executable/bedtools/bedtools_bed12tobed6/.config.vsh.yaml b/target/executable/bedtools/bedtools_bed12tobed6/.config.vsh.yaml index d6f84278..6403c1e1 100644 --- a/target/executable/bedtools/bedtools_bed12tobed6/.config.vsh.yaml +++ b/target/executable/bedtools/bedtools_bed12tobed6/.config.vsh.yaml @@ -199,7 +199,7 @@ build_info: output: "target/executable/bedtools/bedtools_bed12tobed6" executable: "target/executable/bedtools/bedtools_bed12tobed6/bedtools_bed12tobed6" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -225,134 +225,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/executable/bedtools/bedtools_bed12tobed6/bedtools_bed12tobed6 b/target/executable/bedtools/bedtools_bed12tobed6/bedtools_bed12tobed6 index 54ac1632..b441699a 100755 --- a/target/executable/bedtools/bedtools_bed12tobed6/bedtools_bed12tobed6 +++ b/target/executable/bedtools/bedtools_bed12tobed6/bedtools_bed12tobed6 @@ -452,9 +452,9 @@ ENTRYPOINT [] RUN bedtools --version 2>&1 | head -1 | sed 's/.*bedtools v/bedtools: /' > /var/software_versions.txt LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo, Robrecht Cannoodt" LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_bed12tobed6" -LABEL org.opencontainers.image.created="2025-09-17T07:30:37Z" +LABEL org.opencontainers.image.created="2025-09-17T08:35:59Z" LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2" -LABEL org.opencontainers.image.revision="736f18e9887893ca830612b48744fe312fe3c696" +LABEL org.opencontainers.image.revision="666507c86de9150bfbdffdb2dbabc1dbde3c3262" LABEL org.opencontainers.image.version="v0.4.0" VIASHDOCKER diff --git a/target/executable/bedtools/bedtools_bedpetobam/.config.vsh.yaml b/target/executable/bedtools/bedtools_bedpetobam/.config.vsh.yaml index ccef8da2..10f2c923 100644 --- a/target/executable/bedtools/bedtools_bedpetobam/.config.vsh.yaml +++ b/target/executable/bedtools/bedtools_bedpetobam/.config.vsh.yaml @@ -219,7 +219,7 @@ build_info: output: "target/executable/bedtools/bedtools_bedpetobam" executable: "target/executable/bedtools/bedtools_bedpetobam/bedtools_bedpetobam" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -245,134 +245,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/executable/bedtools/bedtools_bedpetobam/bedtools_bedpetobam b/target/executable/bedtools/bedtools_bedpetobam/bedtools_bedpetobam index 65f122d4..c9e10dc7 100755 --- a/target/executable/bedtools/bedtools_bedpetobam/bedtools_bedpetobam +++ b/target/executable/bedtools/bedtools_bedpetobam/bedtools_bedpetobam @@ -452,9 +452,9 @@ RUN bedtools --version 2>&1 | head -1 | sed 's/.*bedtools v/bedtools: /' > /var/ LABEL org.opencontainers.image.authors="Robrecht Cannoodt" LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_bedpetobam" -LABEL org.opencontainers.image.created="2025-09-17T07:30:46Z" +LABEL org.opencontainers.image.created="2025-09-17T08:36:08Z" LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2" -LABEL org.opencontainers.image.revision="736f18e9887893ca830612b48744fe312fe3c696" +LABEL org.opencontainers.image.revision="666507c86de9150bfbdffdb2dbabc1dbde3c3262" LABEL org.opencontainers.image.version="v0.4.0" VIASHDOCKER diff --git a/target/executable/bedtools/bedtools_bedtobam/.config.vsh.yaml b/target/executable/bedtools/bedtools_bedtobam/.config.vsh.yaml index 6843d18d..7211441e 100644 --- a/target/executable/bedtools/bedtools_bedtobam/.config.vsh.yaml +++ b/target/executable/bedtools/bedtools_bedtobam/.config.vsh.yaml @@ -235,7 +235,7 @@ build_info: output: "target/executable/bedtools/bedtools_bedtobam" executable: "target/executable/bedtools/bedtools_bedtobam/bedtools_bedtobam" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -261,134 +261,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/executable/bedtools/bedtools_bedtobam/bedtools_bedtobam b/target/executable/bedtools/bedtools_bedtobam/bedtools_bedtobam index 19e3adbe..cf174e9c 100755 --- a/target/executable/bedtools/bedtools_bedtobam/bedtools_bedtobam +++ b/target/executable/bedtools/bedtools_bedtobam/bedtools_bedtobam @@ -452,9 +452,9 @@ ENTRYPOINT [] RUN bedtools --version 2>&1 | head -1 | sed 's/.*bedtools v/bedtools: /' > /var/software_versions.txt LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo, Robrecht Cannoodt" LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_bedtobam" -LABEL org.opencontainers.image.created="2025-09-17T07:30:45Z" +LABEL org.opencontainers.image.created="2025-09-17T08:36:07Z" LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2" -LABEL org.opencontainers.image.revision="736f18e9887893ca830612b48744fe312fe3c696" +LABEL org.opencontainers.image.revision="666507c86de9150bfbdffdb2dbabc1dbde3c3262" LABEL org.opencontainers.image.version="v0.4.0" VIASHDOCKER diff --git a/target/executable/bedtools/bedtools_closest/.config.vsh.yaml b/target/executable/bedtools/bedtools_closest/.config.vsh.yaml index 49397d42..abffab71 100644 --- a/target/executable/bedtools/bedtools_closest/.config.vsh.yaml +++ b/target/executable/bedtools/bedtools_closest/.config.vsh.yaml @@ -341,7 +341,7 @@ build_info: output: "target/executable/bedtools/bedtools_closest" executable: "target/executable/bedtools/bedtools_closest/bedtools_closest" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -367,134 +367,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/executable/bedtools/bedtools_closest/bedtools_closest b/target/executable/bedtools/bedtools_closest/bedtools_closest index e154c04a..82d6fa2e 100755 --- a/target/executable/bedtools/bedtools_closest/bedtools_closest +++ b/target/executable/bedtools/bedtools_closest/bedtools_closest @@ -451,9 +451,9 @@ ENTRYPOINT [] RUN bedtools --version 2>&1 | head -1 | sed 's/.*bedtools v/bedtools: /' > /var/software_versions.txt LABEL org.opencontainers.image.authors="Robrecht Cannoodt" LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_closest" -LABEL org.opencontainers.image.created="2025-09-17T07:30:42Z" +LABEL org.opencontainers.image.created="2025-09-17T08:36:05Z" LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2" -LABEL org.opencontainers.image.revision="736f18e9887893ca830612b48744fe312fe3c696" +LABEL org.opencontainers.image.revision="666507c86de9150bfbdffdb2dbabc1dbde3c3262" LABEL org.opencontainers.image.version="v0.4.0" VIASHDOCKER diff --git a/target/executable/bedtools/bedtools_cluster/.config.vsh.yaml b/target/executable/bedtools/bedtools_cluster/.config.vsh.yaml index 69de17f5..118c6938 100644 --- a/target/executable/bedtools/bedtools_cluster/.config.vsh.yaml +++ b/target/executable/bedtools/bedtools_cluster/.config.vsh.yaml @@ -208,7 +208,7 @@ build_info: output: "target/executable/bedtools/bedtools_cluster" executable: "target/executable/bedtools/bedtools_cluster/bedtools_cluster" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -234,134 +234,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/executable/bedtools/bedtools_cluster/bedtools_cluster b/target/executable/bedtools/bedtools_cluster/bedtools_cluster index c3dd0228..de4b250e 100755 --- a/target/executable/bedtools/bedtools_cluster/bedtools_cluster +++ b/target/executable/bedtools/bedtools_cluster/bedtools_cluster @@ -452,9 +452,9 @@ RUN bedtools --version 2>&1 | head -1 | sed 's/.*bedtools v/bedtools: /' > /var/ LABEL org.opencontainers.image.authors="Robrecht Cannoodt" LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_cluster" -LABEL org.opencontainers.image.created="2025-09-17T07:30:37Z" +LABEL org.opencontainers.image.created="2025-09-17T08:35:59Z" LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2" -LABEL org.opencontainers.image.revision="736f18e9887893ca830612b48744fe312fe3c696" +LABEL org.opencontainers.image.revision="666507c86de9150bfbdffdb2dbabc1dbde3c3262" LABEL org.opencontainers.image.version="v0.4.0" VIASHDOCKER diff --git a/target/executable/bedtools/bedtools_complement/.config.vsh.yaml b/target/executable/bedtools/bedtools_complement/.config.vsh.yaml index 3c3674a9..918ef01f 100644 --- a/target/executable/bedtools/bedtools_complement/.config.vsh.yaml +++ b/target/executable/bedtools/bedtools_complement/.config.vsh.yaml @@ -209,7 +209,7 @@ build_info: output: "target/executable/bedtools/bedtools_complement" executable: "target/executable/bedtools/bedtools_complement/bedtools_complement" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -235,134 +235,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/executable/bedtools/bedtools_complement/bedtools_complement b/target/executable/bedtools/bedtools_complement/bedtools_complement index eb89d5bb..d070eac3 100755 --- a/target/executable/bedtools/bedtools_complement/bedtools_complement +++ b/target/executable/bedtools/bedtools_complement/bedtools_complement @@ -452,9 +452,9 @@ RUN bedtools --version 2>&1 | head -1 | sed 's/.*bedtools v/bedtools: /' > /var/ LABEL org.opencontainers.image.authors="Robrecht Cannoodt" LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_complement" -LABEL org.opencontainers.image.created="2025-09-17T07:30:42Z" +LABEL org.opencontainers.image.created="2025-09-17T08:36:04Z" LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2" -LABEL org.opencontainers.image.revision="736f18e9887893ca830612b48744fe312fe3c696" +LABEL org.opencontainers.image.revision="666507c86de9150bfbdffdb2dbabc1dbde3c3262" LABEL org.opencontainers.image.version="v0.4.0" VIASHDOCKER diff --git a/target/executable/bedtools/bedtools_coverage/.config.vsh.yaml b/target/executable/bedtools/bedtools_coverage/.config.vsh.yaml index 0e4ae610..c3b274f7 100644 --- a/target/executable/bedtools/bedtools_coverage/.config.vsh.yaml +++ b/target/executable/bedtools/bedtools_coverage/.config.vsh.yaml @@ -362,7 +362,7 @@ build_info: output: "target/executable/bedtools/bedtools_coverage" executable: "target/executable/bedtools/bedtools_coverage/bedtools_coverage" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -388,134 +388,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/executable/bedtools/bedtools_coverage/bedtools_coverage b/target/executable/bedtools/bedtools_coverage/bedtools_coverage index 07dcc03e..781b02ef 100755 --- a/target/executable/bedtools/bedtools_coverage/bedtools_coverage +++ b/target/executable/bedtools/bedtools_coverage/bedtools_coverage @@ -452,9 +452,9 @@ RUN bedtools --version 2>&1 | head -1 | sed 's/.*bedtools v/bedtools: /' > /var/ LABEL org.opencontainers.image.authors="Robrecht Cannoodt" LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_coverage" -LABEL org.opencontainers.image.created="2025-09-17T07:30:41Z" +LABEL org.opencontainers.image.created="2025-09-17T08:36:03Z" LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2" -LABEL org.opencontainers.image.revision="736f18e9887893ca830612b48744fe312fe3c696" +LABEL org.opencontainers.image.revision="666507c86de9150bfbdffdb2dbabc1dbde3c3262" LABEL org.opencontainers.image.version="v0.4.0" VIASHDOCKER diff --git a/target/executable/bedtools/bedtools_expand/.config.vsh.yaml b/target/executable/bedtools/bedtools_expand/.config.vsh.yaml index 7808bc9b..1b8f3c5a 100644 --- a/target/executable/bedtools/bedtools_expand/.config.vsh.yaml +++ b/target/executable/bedtools/bedtools_expand/.config.vsh.yaml @@ -194,7 +194,7 @@ build_info: output: "target/executable/bedtools/bedtools_expand" executable: "target/executable/bedtools/bedtools_expand/bedtools_expand" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -220,134 +220,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/executable/bedtools/bedtools_expand/bedtools_expand b/target/executable/bedtools/bedtools_expand/bedtools_expand index 74145942..f6cfeca7 100755 --- a/target/executable/bedtools/bedtools_expand/bedtools_expand +++ b/target/executable/bedtools/bedtools_expand/bedtools_expand @@ -452,9 +452,9 @@ RUN bedtools --version 2>&1 | head -1 | sed 's/.*bedtools v/bedtools: /' > /var/ LABEL org.opencontainers.image.authors="Robrecht Cannoodt" LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_expand" -LABEL org.opencontainers.image.created="2025-09-17T07:30:41Z" +LABEL org.opencontainers.image.created="2025-09-17T08:36:04Z" LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2" -LABEL org.opencontainers.image.revision="736f18e9887893ca830612b48744fe312fe3c696" +LABEL org.opencontainers.image.revision="666507c86de9150bfbdffdb2dbabc1dbde3c3262" LABEL org.opencontainers.image.version="v0.4.0" VIASHDOCKER diff --git a/target/executable/bedtools/bedtools_fisher/.config.vsh.yaml b/target/executable/bedtools/bedtools_fisher/.config.vsh.yaml index d11f2e0c..be55539d 100644 --- a/target/executable/bedtools/bedtools_fisher/.config.vsh.yaml +++ b/target/executable/bedtools/bedtools_fisher/.config.vsh.yaml @@ -343,7 +343,7 @@ build_info: output: "target/executable/bedtools/bedtools_fisher" executable: "target/executable/bedtools/bedtools_fisher/bedtools_fisher" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -369,134 +369,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/executable/bedtools/bedtools_fisher/bedtools_fisher b/target/executable/bedtools/bedtools_fisher/bedtools_fisher index 447bc723..1838f04f 100755 --- a/target/executable/bedtools/bedtools_fisher/bedtools_fisher +++ b/target/executable/bedtools/bedtools_fisher/bedtools_fisher @@ -452,9 +452,9 @@ RUN bedtools --version 2>&1 | head -1 | sed 's/.*bedtools v/bedtools: /' > /var/ LABEL org.opencontainers.image.authors="Robrecht Cannoodt" LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_fisher" -LABEL org.opencontainers.image.created="2025-09-17T07:30:39Z" +LABEL org.opencontainers.image.created="2025-09-17T08:36:01Z" LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2" -LABEL org.opencontainers.image.revision="736f18e9887893ca830612b48744fe312fe3c696" +LABEL org.opencontainers.image.revision="666507c86de9150bfbdffdb2dbabc1dbde3c3262" LABEL org.opencontainers.image.version="v0.4.0" VIASHDOCKER diff --git a/target/executable/bedtools/bedtools_flank/.config.vsh.yaml b/target/executable/bedtools/bedtools_flank/.config.vsh.yaml index e8c26379..585c7574 100644 --- a/target/executable/bedtools/bedtools_flank/.config.vsh.yaml +++ b/target/executable/bedtools/bedtools_flank/.config.vsh.yaml @@ -274,7 +274,7 @@ build_info: output: "target/executable/bedtools/bedtools_flank" executable: "target/executable/bedtools/bedtools_flank/bedtools_flank" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -300,134 +300,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/executable/bedtools/bedtools_flank/bedtools_flank b/target/executable/bedtools/bedtools_flank/bedtools_flank index d1443966..c34a34c0 100755 --- a/target/executable/bedtools/bedtools_flank/bedtools_flank +++ b/target/executable/bedtools/bedtools_flank/bedtools_flank @@ -452,9 +452,9 @@ RUN bedtools --version 2>&1 | head -1 | sed 's/.*bedtools v/bedtools: /' > /var/ LABEL org.opencontainers.image.authors="Robrecht Cannoodt" LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_flank" -LABEL org.opencontainers.image.created="2025-09-17T07:30:38Z" +LABEL org.opencontainers.image.created="2025-09-17T08:36:00Z" LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2" -LABEL org.opencontainers.image.revision="736f18e9887893ca830612b48744fe312fe3c696" +LABEL org.opencontainers.image.revision="666507c86de9150bfbdffdb2dbabc1dbde3c3262" LABEL org.opencontainers.image.version="v0.4.0" VIASHDOCKER diff --git a/target/executable/bedtools/bedtools_genomecov/.config.vsh.yaml b/target/executable/bedtools/bedtools_genomecov/.config.vsh.yaml index 6828645f..cc063619 100644 --- a/target/executable/bedtools/bedtools_genomecov/.config.vsh.yaml +++ b/target/executable/bedtools/bedtools_genomecov/.config.vsh.yaml @@ -366,7 +366,7 @@ build_info: output: "target/executable/bedtools/bedtools_genomecov" executable: "target/executable/bedtools/bedtools_genomecov/bedtools_genomecov" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -392,134 +392,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/executable/bedtools/bedtools_genomecov/bedtools_genomecov b/target/executable/bedtools/bedtools_genomecov/bedtools_genomecov index ad3250f8..2ff3f88c 100755 --- a/target/executable/bedtools/bedtools_genomecov/bedtools_genomecov +++ b/target/executable/bedtools/bedtools_genomecov/bedtools_genomecov @@ -452,9 +452,9 @@ ENTRYPOINT [] RUN bedtools --version 2>&1 | head -1 | sed 's/.*bedtools v/bedtools: /' > /var/software_versions.txt LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo, Robrecht Cannoodt" LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_genomecov" -LABEL org.opencontainers.image.created="2025-09-17T07:30:47Z" +LABEL org.opencontainers.image.created="2025-09-17T08:36:09Z" LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2" -LABEL org.opencontainers.image.revision="736f18e9887893ca830612b48744fe312fe3c696" +LABEL org.opencontainers.image.revision="666507c86de9150bfbdffdb2dbabc1dbde3c3262" LABEL org.opencontainers.image.version="v0.4.0" VIASHDOCKER diff --git a/target/executable/bedtools/bedtools_getfasta/.config.vsh.yaml b/target/executable/bedtools/bedtools_getfasta/.config.vsh.yaml index 609f30ac..b31208a5 100644 --- a/target/executable/bedtools/bedtools_getfasta/.config.vsh.yaml +++ b/target/executable/bedtools/bedtools_getfasta/.config.vsh.yaml @@ -263,7 +263,7 @@ build_info: output: "target/executable/bedtools/bedtools_getfasta" executable: "target/executable/bedtools/bedtools_getfasta/bedtools_getfasta" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -289,134 +289,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/executable/bedtools/bedtools_getfasta/bedtools_getfasta b/target/executable/bedtools/bedtools_getfasta/bedtools_getfasta index 22647fc8..11c624e4 100755 --- a/target/executable/bedtools/bedtools_getfasta/bedtools_getfasta +++ b/target/executable/bedtools/bedtools_getfasta/bedtools_getfasta @@ -452,9 +452,9 @@ ENTRYPOINT [] RUN bedtools --version 2>&1 | head -1 | sed 's/.*bedtools v/bedtools: /' > /var/software_versions.txt LABEL org.opencontainers.image.authors="Dries Schaumont, Robrecht Cannoodt" LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_getfasta" -LABEL org.opencontainers.image.created="2025-09-17T07:30:40Z" +LABEL org.opencontainers.image.created="2025-09-17T08:36:02Z" LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2" -LABEL org.opencontainers.image.revision="736f18e9887893ca830612b48744fe312fe3c696" +LABEL org.opencontainers.image.revision="666507c86de9150bfbdffdb2dbabc1dbde3c3262" LABEL org.opencontainers.image.version="v0.4.0" VIASHDOCKER diff --git a/target/executable/bedtools/bedtools_groupby/.config.vsh.yaml b/target/executable/bedtools/bedtools_groupby/.config.vsh.yaml index 16a8b867..e48ffa4d 100644 --- a/target/executable/bedtools/bedtools_groupby/.config.vsh.yaml +++ b/target/executable/bedtools/bedtools_groupby/.config.vsh.yaml @@ -285,7 +285,7 @@ build_info: output: "target/executable/bedtools/bedtools_groupby" executable: "target/executable/bedtools/bedtools_groupby/bedtools_groupby" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -311,134 +311,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/executable/bedtools/bedtools_groupby/bedtools_groupby b/target/executable/bedtools/bedtools_groupby/bedtools_groupby index 3bdb5b5b..5af30fdb 100755 --- a/target/executable/bedtools/bedtools_groupby/bedtools_groupby +++ b/target/executable/bedtools/bedtools_groupby/bedtools_groupby @@ -452,9 +452,9 @@ ENTRYPOINT [] RUN bedtools --version 2>&1 | head -1 | sed 's/.*bedtools v/bedtools: /' > /var/software_versions.txt LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo, Robrecht Cannoodt" LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_groupby" -LABEL org.opencontainers.image.created="2025-09-17T07:30:47Z" +LABEL org.opencontainers.image.created="2025-09-17T08:36:10Z" LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2" -LABEL org.opencontainers.image.revision="736f18e9887893ca830612b48744fe312fe3c696" +LABEL org.opencontainers.image.revision="666507c86de9150bfbdffdb2dbabc1dbde3c3262" LABEL org.opencontainers.image.version="v0.4.0" VIASHDOCKER diff --git a/target/executable/bedtools/bedtools_igv/.config.vsh.yaml b/target/executable/bedtools/bedtools_igv/.config.vsh.yaml index 2cd88d61..704e11bc 100644 --- a/target/executable/bedtools/bedtools_igv/.config.vsh.yaml +++ b/target/executable/bedtools/bedtools_igv/.config.vsh.yaml @@ -291,7 +291,7 @@ build_info: output: "target/executable/bedtools/bedtools_igv" executable: "target/executable/bedtools/bedtools_igv/bedtools_igv" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -317,134 +317,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/executable/bedtools/bedtools_igv/bedtools_igv b/target/executable/bedtools/bedtools_igv/bedtools_igv index 327c4a0e..5c69b1b6 100755 --- a/target/executable/bedtools/bedtools_igv/bedtools_igv +++ b/target/executable/bedtools/bedtools_igv/bedtools_igv @@ -452,9 +452,9 @@ RUN bedtools --version 2>&1 | head -1 | sed 's/.*bedtools v/bedtools: /' > /var/ LABEL org.opencontainers.image.authors="Robrecht Cannoodt" LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_igv" -LABEL org.opencontainers.image.created="2025-09-17T07:30:40Z" +LABEL org.opencontainers.image.created="2025-09-17T08:36:02Z" LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2" -LABEL org.opencontainers.image.revision="736f18e9887893ca830612b48744fe312fe3c696" +LABEL org.opencontainers.image.revision="666507c86de9150bfbdffdb2dbabc1dbde3c3262" LABEL org.opencontainers.image.version="v0.4.0" VIASHDOCKER diff --git a/target/executable/bedtools/bedtools_intersect/.config.vsh.yaml b/target/executable/bedtools/bedtools_intersect/.config.vsh.yaml index 70fb57ff..3149e654 100644 --- a/target/executable/bedtools/bedtools_intersect/.config.vsh.yaml +++ b/target/executable/bedtools/bedtools_intersect/.config.vsh.yaml @@ -417,7 +417,7 @@ build_info: output: "target/executable/bedtools/bedtools_intersect" executable: "target/executable/bedtools/bedtools_intersect/bedtools_intersect" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -443,134 +443,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/executable/bedtools/bedtools_intersect/bedtools_intersect b/target/executable/bedtools/bedtools_intersect/bedtools_intersect index 75268b18..1a41b7e4 100755 --- a/target/executable/bedtools/bedtools_intersect/bedtools_intersect +++ b/target/executable/bedtools/bedtools_intersect/bedtools_intersect @@ -453,9 +453,9 @@ RUN echo "bedtools: \"$(bedtools --version | sed -n 's/^bedtools //p')\"" > /var LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo, Robrecht Cannoodt" LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_intersect" -LABEL org.opencontainers.image.created="2025-09-17T07:30:39Z" +LABEL org.opencontainers.image.created="2025-09-17T08:36:01Z" LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2" -LABEL org.opencontainers.image.revision="736f18e9887893ca830612b48744fe312fe3c696" +LABEL org.opencontainers.image.revision="666507c86de9150bfbdffdb2dbabc1dbde3c3262" LABEL org.opencontainers.image.version="v0.4.0" VIASHDOCKER diff --git a/target/executable/bedtools/bedtools_jaccard/.config.vsh.yaml b/target/executable/bedtools/bedtools_jaccard/.config.vsh.yaml index 62c2497e..567cf4f7 100644 --- a/target/executable/bedtools/bedtools_jaccard/.config.vsh.yaml +++ b/target/executable/bedtools/bedtools_jaccard/.config.vsh.yaml @@ -341,7 +341,7 @@ build_info: output: "target/executable/bedtools/bedtools_jaccard" executable: "target/executable/bedtools/bedtools_jaccard/bedtools_jaccard" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -367,134 +367,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/executable/bedtools/bedtools_jaccard/bedtools_jaccard b/target/executable/bedtools/bedtools_jaccard/bedtools_jaccard index 49b14900..400fcaf8 100755 --- a/target/executable/bedtools/bedtools_jaccard/bedtools_jaccard +++ b/target/executable/bedtools/bedtools_jaccard/bedtools_jaccard @@ -452,9 +452,9 @@ RUN bedtools --version 2>&1 | head -1 | sed 's/.*bedtools v/bedtools: /' > /var/ LABEL org.opencontainers.image.authors="Robrecht Cannoodt" LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_jaccard" -LABEL org.opencontainers.image.created="2025-09-17T07:30:38Z" +LABEL org.opencontainers.image.created="2025-09-17T08:36:00Z" LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2" -LABEL org.opencontainers.image.revision="736f18e9887893ca830612b48744fe312fe3c696" +LABEL org.opencontainers.image.revision="666507c86de9150bfbdffdb2dbabc1dbde3c3262" LABEL org.opencontainers.image.version="v0.4.0" VIASHDOCKER diff --git a/target/executable/bedtools/bedtools_links/.config.vsh.yaml b/target/executable/bedtools/bedtools_links/.config.vsh.yaml index 8811589c..7b91e3e5 100644 --- a/target/executable/bedtools/bedtools_links/.config.vsh.yaml +++ b/target/executable/bedtools/bedtools_links/.config.vsh.yaml @@ -237,7 +237,7 @@ build_info: output: "target/executable/bedtools/bedtools_links" executable: "target/executable/bedtools/bedtools_links/bedtools_links" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -263,134 +263,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/executable/bedtools/bedtools_links/bedtools_links b/target/executable/bedtools/bedtools_links/bedtools_links index c0a90458..e18606d3 100755 --- a/target/executable/bedtools/bedtools_links/bedtools_links +++ b/target/executable/bedtools/bedtools_links/bedtools_links @@ -452,9 +452,9 @@ ENTRYPOINT [] RUN bedtools --version 2>&1 | head -1 | sed 's/.*bedtools v/bedtools: /' > /var/software_versions.txt LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo, Robrecht Cannoodt" LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_links" -LABEL org.opencontainers.image.created="2025-09-17T07:30:46Z" +LABEL org.opencontainers.image.created="2025-09-17T08:36:08Z" LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2" -LABEL org.opencontainers.image.revision="736f18e9887893ca830612b48744fe312fe3c696" +LABEL org.opencontainers.image.revision="666507c86de9150bfbdffdb2dbabc1dbde3c3262" LABEL org.opencontainers.image.version="v0.4.0" VIASHDOCKER diff --git a/target/executable/bedtools/bedtools_makewindows/.config.vsh.yaml b/target/executable/bedtools/bedtools_makewindows/.config.vsh.yaml index 448df31b..08b050bf 100644 --- a/target/executable/bedtools/bedtools_makewindows/.config.vsh.yaml +++ b/target/executable/bedtools/bedtools_makewindows/.config.vsh.yaml @@ -279,7 +279,7 @@ build_info: output: "target/executable/bedtools/bedtools_makewindows" executable: "target/executable/bedtools/bedtools_makewindows/bedtools_makewindows" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -305,134 +305,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/executable/bedtools/bedtools_makewindows/bedtools_makewindows b/target/executable/bedtools/bedtools_makewindows/bedtools_makewindows index 3e4dd096..9cb135c7 100755 --- a/target/executable/bedtools/bedtools_makewindows/bedtools_makewindows +++ b/target/executable/bedtools/bedtools_makewindows/bedtools_makewindows @@ -452,9 +452,9 @@ RUN bedtools --version 2>&1 | head -1 | sed 's/.*bedtools v/bedtools: /' > /var/ LABEL org.opencontainers.image.authors="Robrecht Cannoodt" LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_makewindows" -LABEL org.opencontainers.image.created="2025-09-17T07:30:45Z" +LABEL org.opencontainers.image.created="2025-09-17T08:36:07Z" LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2" -LABEL org.opencontainers.image.revision="736f18e9887893ca830612b48744fe312fe3c696" +LABEL org.opencontainers.image.revision="666507c86de9150bfbdffdb2dbabc1dbde3c3262" LABEL org.opencontainers.image.version="v0.4.0" VIASHDOCKER diff --git a/target/executable/bedtools/bedtools_map/.config.vsh.yaml b/target/executable/bedtools/bedtools_map/.config.vsh.yaml index 41140aac..3d9c618c 100644 --- a/target/executable/bedtools/bedtools_map/.config.vsh.yaml +++ b/target/executable/bedtools/bedtools_map/.config.vsh.yaml @@ -404,7 +404,7 @@ build_info: output: "target/executable/bedtools/bedtools_map" executable: "target/executable/bedtools/bedtools_map/bedtools_map" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -430,134 +430,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/executable/bedtools/bedtools_map/bedtools_map b/target/executable/bedtools/bedtools_map/bedtools_map index 2799d7fa..016bdba9 100755 --- a/target/executable/bedtools/bedtools_map/bedtools_map +++ b/target/executable/bedtools/bedtools_map/bedtools_map @@ -452,9 +452,9 @@ RUN bedtools --version 2>&1 | head -1 | sed 's/.*bedtools v/bedtools: /' > /var/ LABEL org.opencontainers.image.authors="Robrecht Cannoodt" LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_map" -LABEL org.opencontainers.image.created="2025-09-17T07:30:47Z" +LABEL org.opencontainers.image.created="2025-09-17T08:36:09Z" LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2" -LABEL org.opencontainers.image.revision="736f18e9887893ca830612b48744fe312fe3c696" +LABEL org.opencontainers.image.revision="666507c86de9150bfbdffdb2dbabc1dbde3c3262" LABEL org.opencontainers.image.version="v0.4.0" VIASHDOCKER diff --git a/target/executable/bedtools/bedtools_maskfasta/.config.vsh.yaml b/target/executable/bedtools/bedtools_maskfasta/.config.vsh.yaml index c135a489..c70a0bb1 100644 --- a/target/executable/bedtools/bedtools_maskfasta/.config.vsh.yaml +++ b/target/executable/bedtools/bedtools_maskfasta/.config.vsh.yaml @@ -240,7 +240,7 @@ build_info: output: "target/executable/bedtools/bedtools_maskfasta" executable: "target/executable/bedtools/bedtools_maskfasta/bedtools_maskfasta" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -266,134 +266,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/executable/bedtools/bedtools_maskfasta/bedtools_maskfasta b/target/executable/bedtools/bedtools_maskfasta/bedtools_maskfasta index c21b44df..1729891b 100755 --- a/target/executable/bedtools/bedtools_maskfasta/bedtools_maskfasta +++ b/target/executable/bedtools/bedtools_maskfasta/bedtools_maskfasta @@ -452,9 +452,9 @@ RUN bedtools --version 2>&1 | head -1 | sed 's/.*bedtools v/bedtools: /' > /var/ LABEL org.opencontainers.image.authors="Robrecht Cannoodt" LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_maskfasta" -LABEL org.opencontainers.image.created="2025-09-17T07:30:42Z" +LABEL org.opencontainers.image.created="2025-09-17T08:36:04Z" LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2" -LABEL org.opencontainers.image.revision="736f18e9887893ca830612b48744fe312fe3c696" +LABEL org.opencontainers.image.revision="666507c86de9150bfbdffdb2dbabc1dbde3c3262" LABEL org.opencontainers.image.version="v0.4.0" VIASHDOCKER diff --git a/target/executable/bedtools/bedtools_merge/.config.vsh.yaml b/target/executable/bedtools/bedtools_merge/.config.vsh.yaml index a0318a57..69435e09 100644 --- a/target/executable/bedtools/bedtools_merge/.config.vsh.yaml +++ b/target/executable/bedtools/bedtools_merge/.config.vsh.yaml @@ -328,7 +328,7 @@ build_info: output: "target/executable/bedtools/bedtools_merge" executable: "target/executable/bedtools/bedtools_merge/bedtools_merge" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -354,134 +354,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/executable/bedtools/bedtools_merge/bedtools_merge b/target/executable/bedtools/bedtools_merge/bedtools_merge index 9c372b4c..b3f74eb0 100755 --- a/target/executable/bedtools/bedtools_merge/bedtools_merge +++ b/target/executable/bedtools/bedtools_merge/bedtools_merge @@ -452,9 +452,9 @@ ENTRYPOINT [] RUN bedtools --version 2>&1 | head -1 | sed 's/.*bedtools v/bedtools: /' > /var/software_versions.txt LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo, Robrecht Cannoodt" LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_merge" -LABEL org.opencontainers.image.created="2025-09-17T07:30:47Z" +LABEL org.opencontainers.image.created="2025-09-17T08:36:09Z" LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2" -LABEL org.opencontainers.image.revision="736f18e9887893ca830612b48744fe312fe3c696" +LABEL org.opencontainers.image.revision="666507c86de9150bfbdffdb2dbabc1dbde3c3262" LABEL org.opencontainers.image.version="v0.4.0" VIASHDOCKER diff --git a/target/executable/bedtools/bedtools_multicov/.config.vsh.yaml b/target/executable/bedtools/bedtools_multicov/.config.vsh.yaml index a7fa4f58..b24ab6f8 100644 --- a/target/executable/bedtools/bedtools_multicov/.config.vsh.yaml +++ b/target/executable/bedtools/bedtools_multicov/.config.vsh.yaml @@ -315,7 +315,7 @@ build_info: output: "target/executable/bedtools/bedtools_multicov" executable: "target/executable/bedtools/bedtools_multicov/bedtools_multicov" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -341,134 +341,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/executable/bedtools/bedtools_multicov/bedtools_multicov b/target/executable/bedtools/bedtools_multicov/bedtools_multicov index 543d029a..e801b822 100755 --- a/target/executable/bedtools/bedtools_multicov/bedtools_multicov +++ b/target/executable/bedtools/bedtools_multicov/bedtools_multicov @@ -452,9 +452,9 @@ RUN bedtools --version 2>&1 | head -1 | sed 's/.*bedtools v/bedtools: /' > /var/ LABEL org.opencontainers.image.authors="Robrecht Cannoodt" LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_multicov" -LABEL org.opencontainers.image.created="2025-09-17T07:30:46Z" +LABEL org.opencontainers.image.created="2025-09-17T08:36:08Z" LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2" -LABEL org.opencontainers.image.revision="736f18e9887893ca830612b48744fe312fe3c696" +LABEL org.opencontainers.image.revision="666507c86de9150bfbdffdb2dbabc1dbde3c3262" LABEL org.opencontainers.image.version="v0.4.0" VIASHDOCKER diff --git a/target/executable/bedtools/bedtools_multiinter/.config.vsh.yaml b/target/executable/bedtools/bedtools_multiinter/.config.vsh.yaml index 8707ba8a..0e0c3d6f 100644 --- a/target/executable/bedtools/bedtools_multiinter/.config.vsh.yaml +++ b/target/executable/bedtools/bedtools_multiinter/.config.vsh.yaml @@ -261,7 +261,7 @@ build_info: output: "target/executable/bedtools/bedtools_multiinter" executable: "target/executable/bedtools/bedtools_multiinter/bedtools_multiinter" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -287,134 +287,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/executable/bedtools/bedtools_multiinter/bedtools_multiinter b/target/executable/bedtools/bedtools_multiinter/bedtools_multiinter index 2d7c2748..5222f7aa 100755 --- a/target/executable/bedtools/bedtools_multiinter/bedtools_multiinter +++ b/target/executable/bedtools/bedtools_multiinter/bedtools_multiinter @@ -452,9 +452,9 @@ RUN bedtools --version 2>&1 | head -1 | sed 's/.*bedtools v/bedtools: /' > /var/ LABEL org.opencontainers.image.authors="Robrecht Cannoodt" LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_multiinter" -LABEL org.opencontainers.image.created="2025-09-17T07:30:37Z" +LABEL org.opencontainers.image.created="2025-09-17T08:35:59Z" LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2" -LABEL org.opencontainers.image.revision="736f18e9887893ca830612b48744fe312fe3c696" +LABEL org.opencontainers.image.revision="666507c86de9150bfbdffdb2dbabc1dbde3c3262" LABEL org.opencontainers.image.version="v0.4.0" VIASHDOCKER diff --git a/target/executable/bedtools/bedtools_overlap/.config.vsh.yaml b/target/executable/bedtools/bedtools_overlap/.config.vsh.yaml index 485599a9..6fde4e3a 100644 --- a/target/executable/bedtools/bedtools_overlap/.config.vsh.yaml +++ b/target/executable/bedtools/bedtools_overlap/.config.vsh.yaml @@ -206,7 +206,7 @@ build_info: output: "target/executable/bedtools/bedtools_overlap" executable: "target/executable/bedtools/bedtools_overlap/bedtools_overlap" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -232,134 +232,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/executable/bedtools/bedtools_overlap/bedtools_overlap b/target/executable/bedtools/bedtools_overlap/bedtools_overlap index a39a3d39..03c76cb6 100755 --- a/target/executable/bedtools/bedtools_overlap/bedtools_overlap +++ b/target/executable/bedtools/bedtools_overlap/bedtools_overlap @@ -452,9 +452,9 @@ RUN bedtools --version 2>&1 | head -1 | sed 's/.*bedtools v/bedtools: /' > /var/ LABEL org.opencontainers.image.authors="Robrecht Cannoodt" LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_overlap" -LABEL org.opencontainers.image.created="2025-09-17T07:30:43Z" +LABEL org.opencontainers.image.created="2025-09-17T08:36:05Z" LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2" -LABEL org.opencontainers.image.revision="736f18e9887893ca830612b48744fe312fe3c696" +LABEL org.opencontainers.image.revision="666507c86de9150bfbdffdb2dbabc1dbde3c3262" LABEL org.opencontainers.image.version="v0.4.0" VIASHDOCKER diff --git a/target/executable/bedtools/bedtools_pairtobed/.config.vsh.yaml b/target/executable/bedtools/bedtools_pairtobed/.config.vsh.yaml index 7fd48862..d154eb8c 100644 --- a/target/executable/bedtools/bedtools_pairtobed/.config.vsh.yaml +++ b/target/executable/bedtools/bedtools_pairtobed/.config.vsh.yaml @@ -330,7 +330,7 @@ build_info: output: "target/executable/bedtools/bedtools_pairtobed" executable: "target/executable/bedtools/bedtools_pairtobed/bedtools_pairtobed" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -356,134 +356,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/executable/bedtools/bedtools_pairtobed/bedtools_pairtobed b/target/executable/bedtools/bedtools_pairtobed/bedtools_pairtobed index 9210da6a..56746fe4 100755 --- a/target/executable/bedtools/bedtools_pairtobed/bedtools_pairtobed +++ b/target/executable/bedtools/bedtools_pairtobed/bedtools_pairtobed @@ -452,9 +452,9 @@ RUN bedtools --version 2>&1 | head -1 | sed 's/.*bedtools v/bedtools: /' > /var/ LABEL org.opencontainers.image.authors="Robrecht Cannoodt" LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_pairtobed" -LABEL org.opencontainers.image.created="2025-09-17T07:30:42Z" +LABEL org.opencontainers.image.created="2025-09-17T08:36:04Z" LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2" -LABEL org.opencontainers.image.revision="736f18e9887893ca830612b48744fe312fe3c696" +LABEL org.opencontainers.image.revision="666507c86de9150bfbdffdb2dbabc1dbde3c3262" LABEL org.opencontainers.image.version="v0.4.0" VIASHDOCKER diff --git a/target/executable/bedtools/bedtools_pairtopair/.config.vsh.yaml b/target/executable/bedtools/bedtools_pairtopair/.config.vsh.yaml index cb36ff44..929ac6ec 100644 --- a/target/executable/bedtools/bedtools_pairtopair/.config.vsh.yaml +++ b/target/executable/bedtools/bedtools_pairtopair/.config.vsh.yaml @@ -288,7 +288,7 @@ build_info: output: "target/executable/bedtools/bedtools_pairtopair" executable: "target/executable/bedtools/bedtools_pairtopair/bedtools_pairtopair" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -314,134 +314,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/executable/bedtools/bedtools_pairtopair/bedtools_pairtopair b/target/executable/bedtools/bedtools_pairtopair/bedtools_pairtopair index 4b538768..fd93e193 100755 --- a/target/executable/bedtools/bedtools_pairtopair/bedtools_pairtopair +++ b/target/executable/bedtools/bedtools_pairtopair/bedtools_pairtopair @@ -452,9 +452,9 @@ RUN bedtools --version 2>&1 | head -1 | sed 's/.*bedtools v/bedtools: /' > /var/ LABEL org.opencontainers.image.authors="Robrecht Cannoodt" LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_pairtopair" -LABEL org.opencontainers.image.created="2025-09-17T07:30:44Z" +LABEL org.opencontainers.image.created="2025-09-17T08:36:06Z" LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2" -LABEL org.opencontainers.image.revision="736f18e9887893ca830612b48744fe312fe3c696" +LABEL org.opencontainers.image.revision="666507c86de9150bfbdffdb2dbabc1dbde3c3262" LABEL org.opencontainers.image.version="v0.4.0" VIASHDOCKER diff --git a/target/executable/bedtools/bedtools_random/.config.vsh.yaml b/target/executable/bedtools/bedtools_random/.config.vsh.yaml index 618172ff..4b579d6c 100644 --- a/target/executable/bedtools/bedtools_random/.config.vsh.yaml +++ b/target/executable/bedtools/bedtools_random/.config.vsh.yaml @@ -240,7 +240,7 @@ build_info: output: "target/executable/bedtools/bedtools_random" executable: "target/executable/bedtools/bedtools_random/bedtools_random" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -266,134 +266,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/executable/bedtools/bedtools_random/bedtools_random b/target/executable/bedtools/bedtools_random/bedtools_random index c4ab8c15..26ac975b 100755 --- a/target/executable/bedtools/bedtools_random/bedtools_random +++ b/target/executable/bedtools/bedtools_random/bedtools_random @@ -452,9 +452,9 @@ RUN bedtools --version 2>&1 | head -1 | sed 's/.*bedtools v/bedtools: /' > /var/ LABEL org.opencontainers.image.authors="Robrecht Cannoodt" LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_random" -LABEL org.opencontainers.image.created="2025-09-17T07:30:43Z" +LABEL org.opencontainers.image.created="2025-09-17T08:36:05Z" LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2" -LABEL org.opencontainers.image.revision="736f18e9887893ca830612b48744fe312fe3c696" +LABEL org.opencontainers.image.revision="666507c86de9150bfbdffdb2dbabc1dbde3c3262" LABEL org.opencontainers.image.version="v0.4.0" VIASHDOCKER diff --git a/target/executable/bedtools/bedtools_reldist/.config.vsh.yaml b/target/executable/bedtools/bedtools_reldist/.config.vsh.yaml index 5be35b36..82026aa3 100644 --- a/target/executable/bedtools/bedtools_reldist/.config.vsh.yaml +++ b/target/executable/bedtools/bedtools_reldist/.config.vsh.yaml @@ -221,7 +221,7 @@ build_info: output: "target/executable/bedtools/bedtools_reldist" executable: "target/executable/bedtools/bedtools_reldist/bedtools_reldist" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -247,134 +247,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/executable/bedtools/bedtools_reldist/bedtools_reldist b/target/executable/bedtools/bedtools_reldist/bedtools_reldist index adc8c31d..43593a6a 100755 --- a/target/executable/bedtools/bedtools_reldist/bedtools_reldist +++ b/target/executable/bedtools/bedtools_reldist/bedtools_reldist @@ -452,9 +452,9 @@ RUN bedtools --version 2>&1 | head -1 | sed 's/.*bedtools v/bedtools: /' > /var/ LABEL org.opencontainers.image.authors="Robrecht Cannoodt" LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_reldist" -LABEL org.opencontainers.image.created="2025-09-17T07:30:38Z" +LABEL org.opencontainers.image.created="2025-09-17T08:36:00Z" LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2" -LABEL org.opencontainers.image.revision="736f18e9887893ca830612b48744fe312fe3c696" +LABEL org.opencontainers.image.revision="666507c86de9150bfbdffdb2dbabc1dbde3c3262" LABEL org.opencontainers.image.version="v0.4.0" VIASHDOCKER diff --git a/target/executable/bedtools/bedtools_sample/.config.vsh.yaml b/target/executable/bedtools/bedtools_sample/.config.vsh.yaml index 6876b6a8..d34b87f0 100644 --- a/target/executable/bedtools/bedtools_sample/.config.vsh.yaml +++ b/target/executable/bedtools/bedtools_sample/.config.vsh.yaml @@ -293,7 +293,7 @@ build_info: output: "target/executable/bedtools/bedtools_sample" executable: "target/executable/bedtools/bedtools_sample/bedtools_sample" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -319,134 +319,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/executable/bedtools/bedtools_sample/bedtools_sample b/target/executable/bedtools/bedtools_sample/bedtools_sample index 801c2492..ecfba0d1 100755 --- a/target/executable/bedtools/bedtools_sample/bedtools_sample +++ b/target/executable/bedtools/bedtools_sample/bedtools_sample @@ -452,9 +452,9 @@ RUN bedtools --version 2>&1 | head -1 | sed 's/.*bedtools v/bedtools: /' > /var/ LABEL org.opencontainers.image.authors="Robrecht Cannoodt" LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_sample" -LABEL org.opencontainers.image.created="2025-09-17T07:30:45Z" +LABEL org.opencontainers.image.created="2025-09-17T08:36:07Z" LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2" -LABEL org.opencontainers.image.revision="736f18e9887893ca830612b48744fe312fe3c696" +LABEL org.opencontainers.image.revision="666507c86de9150bfbdffdb2dbabc1dbde3c3262" LABEL org.opencontainers.image.version="v0.4.0" VIASHDOCKER diff --git a/target/executable/bedtools/bedtools_shift/.config.vsh.yaml b/target/executable/bedtools/bedtools_shift/.config.vsh.yaml index 7c7eb8f6..8dae6e34 100644 --- a/target/executable/bedtools/bedtools_shift/.config.vsh.yaml +++ b/target/executable/bedtools/bedtools_shift/.config.vsh.yaml @@ -273,7 +273,7 @@ build_info: output: "target/executable/bedtools/bedtools_shift" executable: "target/executable/bedtools/bedtools_shift/bedtools_shift" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -299,134 +299,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/executable/bedtools/bedtools_shift/bedtools_shift b/target/executable/bedtools/bedtools_shift/bedtools_shift index 569398ee..a42bc5ea 100755 --- a/target/executable/bedtools/bedtools_shift/bedtools_shift +++ b/target/executable/bedtools/bedtools_shift/bedtools_shift @@ -452,9 +452,9 @@ RUN bedtools --version 2>&1 | head -1 | sed 's/.*bedtools v/bedtools: /' > /var/ LABEL org.opencontainers.image.authors="Robrecht Cannoodt" LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_shift" -LABEL org.opencontainers.image.created="2025-09-17T07:30:40Z" +LABEL org.opencontainers.image.created="2025-09-17T08:36:02Z" LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2" -LABEL org.opencontainers.image.revision="736f18e9887893ca830612b48744fe312fe3c696" +LABEL org.opencontainers.image.revision="666507c86de9150bfbdffdb2dbabc1dbde3c3262" LABEL org.opencontainers.image.version="v0.4.0" VIASHDOCKER diff --git a/target/executable/bedtools/bedtools_shuffle/.config.vsh.yaml b/target/executable/bedtools/bedtools_shuffle/.config.vsh.yaml index c7b5c337..f5e31d27 100644 --- a/target/executable/bedtools/bedtools_shuffle/.config.vsh.yaml +++ b/target/executable/bedtools/bedtools_shuffle/.config.vsh.yaml @@ -348,7 +348,7 @@ build_info: output: "target/executable/bedtools/bedtools_shuffle" executable: "target/executable/bedtools/bedtools_shuffle/bedtools_shuffle" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -374,134 +374,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/executable/bedtools/bedtools_shuffle/bedtools_shuffle b/target/executable/bedtools/bedtools_shuffle/bedtools_shuffle index 667bcd20..19a58bf3 100755 --- a/target/executable/bedtools/bedtools_shuffle/bedtools_shuffle +++ b/target/executable/bedtools/bedtools_shuffle/bedtools_shuffle @@ -452,9 +452,9 @@ RUN bedtools --version 2>&1 | head -1 | sed 's/.*bedtools v/bedtools: /' > /var/ LABEL org.opencontainers.image.authors="Robrecht Cannoodt" LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_shuffle" -LABEL org.opencontainers.image.created="2025-09-17T07:30:45Z" +LABEL org.opencontainers.image.created="2025-09-17T08:36:07Z" LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2" -LABEL org.opencontainers.image.revision="736f18e9887893ca830612b48744fe312fe3c696" +LABEL org.opencontainers.image.revision="666507c86de9150bfbdffdb2dbabc1dbde3c3262" LABEL org.opencontainers.image.version="v0.4.0" VIASHDOCKER diff --git a/target/executable/bedtools/bedtools_slop/.config.vsh.yaml b/target/executable/bedtools/bedtools_slop/.config.vsh.yaml index aa53236d..e25735bc 100644 --- a/target/executable/bedtools/bedtools_slop/.config.vsh.yaml +++ b/target/executable/bedtools/bedtools_slop/.config.vsh.yaml @@ -288,7 +288,7 @@ build_info: output: "target/executable/bedtools/bedtools_slop" executable: "target/executable/bedtools/bedtools_slop/bedtools_slop" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -314,134 +314,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/executable/bedtools/bedtools_slop/bedtools_slop b/target/executable/bedtools/bedtools_slop/bedtools_slop index 94c3559c..2d3e4605 100755 --- a/target/executable/bedtools/bedtools_slop/bedtools_slop +++ b/target/executable/bedtools/bedtools_slop/bedtools_slop @@ -452,9 +452,9 @@ RUN bedtools --version 2>&1 | head -1 | sed 's/.*bedtools v/bedtools: /' > /var/ LABEL org.opencontainers.image.authors="Robrecht Cannoodt" LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_slop" -LABEL org.opencontainers.image.created="2025-09-17T07:30:44Z" +LABEL org.opencontainers.image.created="2025-09-17T08:36:06Z" LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2" -LABEL org.opencontainers.image.revision="736f18e9887893ca830612b48744fe312fe3c696" +LABEL org.opencontainers.image.revision="666507c86de9150bfbdffdb2dbabc1dbde3c3262" LABEL org.opencontainers.image.version="v0.4.0" VIASHDOCKER diff --git a/target/executable/bedtools/bedtools_sort/.config.vsh.yaml b/target/executable/bedtools/bedtools_sort/.config.vsh.yaml index e58d5bbe..e07aa662 100644 --- a/target/executable/bedtools/bedtools_sort/.config.vsh.yaml +++ b/target/executable/bedtools/bedtools_sort/.config.vsh.yaml @@ -276,7 +276,7 @@ build_info: output: "target/executable/bedtools/bedtools_sort" executable: "target/executable/bedtools/bedtools_sort/bedtools_sort" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -302,134 +302,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/executable/bedtools/bedtools_sort/bedtools_sort b/target/executable/bedtools/bedtools_sort/bedtools_sort index c4958dfb..629e68fd 100755 --- a/target/executable/bedtools/bedtools_sort/bedtools_sort +++ b/target/executable/bedtools/bedtools_sort/bedtools_sort @@ -452,9 +452,9 @@ ENTRYPOINT [] RUN bedtools --version 2>&1 | head -1 | sed 's/.*bedtools v/bedtools: /' > /var/software_versions.txt LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo, Robrecht Cannoodt" LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_sort" -LABEL org.opencontainers.image.created="2025-09-17T07:30:48Z" +LABEL org.opencontainers.image.created="2025-09-17T08:36:10Z" LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2" -LABEL org.opencontainers.image.revision="736f18e9887893ca830612b48744fe312fe3c696" +LABEL org.opencontainers.image.revision="666507c86de9150bfbdffdb2dbabc1dbde3c3262" LABEL org.opencontainers.image.version="v0.4.0" VIASHDOCKER diff --git a/target/executable/bedtools/bedtools_spacing/.config.vsh.yaml b/target/executable/bedtools/bedtools_spacing/.config.vsh.yaml index 51b264bd..c595e799 100644 --- a/target/executable/bedtools/bedtools_spacing/.config.vsh.yaml +++ b/target/executable/bedtools/bedtools_spacing/.config.vsh.yaml @@ -239,7 +239,7 @@ build_info: output: "target/executable/bedtools/bedtools_spacing" executable: "target/executable/bedtools/bedtools_spacing/bedtools_spacing" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -265,134 +265,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/executable/bedtools/bedtools_spacing/bedtools_spacing b/target/executable/bedtools/bedtools_spacing/bedtools_spacing index 17b1577c..6f3ad18f 100755 --- a/target/executable/bedtools/bedtools_spacing/bedtools_spacing +++ b/target/executable/bedtools/bedtools_spacing/bedtools_spacing @@ -452,9 +452,9 @@ RUN bedtools --version 2>&1 | head -1 | sed 's/.*bedtools v/bedtools: /' > /var/ LABEL org.opencontainers.image.authors="Robrecht Cannoodt" LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_spacing" -LABEL org.opencontainers.image.created="2025-09-17T07:30:44Z" +LABEL org.opencontainers.image.created="2025-09-17T08:36:06Z" LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2" -LABEL org.opencontainers.image.revision="736f18e9887893ca830612b48744fe312fe3c696" +LABEL org.opencontainers.image.revision="666507c86de9150bfbdffdb2dbabc1dbde3c3262" LABEL org.opencontainers.image.version="v0.4.0" VIASHDOCKER diff --git a/target/executable/bedtools/bedtools_split/.config.vsh.yaml b/target/executable/bedtools/bedtools_split/.config.vsh.yaml index 3e8ac318..c144ab16 100644 --- a/target/executable/bedtools/bedtools_split/.config.vsh.yaml +++ b/target/executable/bedtools/bedtools_split/.config.vsh.yaml @@ -243,7 +243,7 @@ build_info: output: "target/executable/bedtools/bedtools_split" executable: "target/executable/bedtools/bedtools_split/bedtools_split" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -269,134 +269,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/executable/bedtools/bedtools_split/bedtools_split b/target/executable/bedtools/bedtools_split/bedtools_split index 502ad76d..ff44a659 100755 --- a/target/executable/bedtools/bedtools_split/bedtools_split +++ b/target/executable/bedtools/bedtools_split/bedtools_split @@ -452,9 +452,9 @@ RUN bedtools --version 2>&1 | head -1 | sed 's/.*bedtools v/bedtools: /' > /var/ LABEL org.opencontainers.image.authors="Robrecht Cannoodt" LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_split" -LABEL org.opencontainers.image.created="2025-09-17T07:30:37Z" +LABEL org.opencontainers.image.created="2025-09-17T08:36:00Z" LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2" -LABEL org.opencontainers.image.revision="736f18e9887893ca830612b48744fe312fe3c696" +LABEL org.opencontainers.image.revision="666507c86de9150bfbdffdb2dbabc1dbde3c3262" LABEL org.opencontainers.image.version="v0.4.0" VIASHDOCKER diff --git a/target/executable/bedtools/bedtools_subtract/.config.vsh.yaml b/target/executable/bedtools/bedtools_subtract/.config.vsh.yaml index f0b3fd6b..869af189 100644 --- a/target/executable/bedtools/bedtools_subtract/.config.vsh.yaml +++ b/target/executable/bedtools/bedtools_subtract/.config.vsh.yaml @@ -423,7 +423,7 @@ build_info: output: "target/executable/bedtools/bedtools_subtract" executable: "target/executable/bedtools/bedtools_subtract/bedtools_subtract" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -449,134 +449,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/executable/bedtools/bedtools_subtract/bedtools_subtract b/target/executable/bedtools/bedtools_subtract/bedtools_subtract index 4b4483c3..37d5acac 100755 --- a/target/executable/bedtools/bedtools_subtract/bedtools_subtract +++ b/target/executable/bedtools/bedtools_subtract/bedtools_subtract @@ -452,9 +452,9 @@ RUN bedtools --version 2>&1 | head -1 | sed 's/.*bedtools v/bedtools: /' > /var/ LABEL org.opencontainers.image.authors="Robrecht Cannoodt" LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_subtract" -LABEL org.opencontainers.image.created="2025-09-17T07:30:41Z" +LABEL org.opencontainers.image.created="2025-09-17T08:36:03Z" LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2" -LABEL org.opencontainers.image.revision="736f18e9887893ca830612b48744fe312fe3c696" +LABEL org.opencontainers.image.revision="666507c86de9150bfbdffdb2dbabc1dbde3c3262" LABEL org.opencontainers.image.version="v0.4.0" VIASHDOCKER diff --git a/target/executable/bedtools/bedtools_summary/.config.vsh.yaml b/target/executable/bedtools/bedtools_summary/.config.vsh.yaml index 822188e5..3f918974 100644 --- a/target/executable/bedtools/bedtools_summary/.config.vsh.yaml +++ b/target/executable/bedtools/bedtools_summary/.config.vsh.yaml @@ -211,7 +211,7 @@ build_info: output: "target/executable/bedtools/bedtools_summary" executable: "target/executable/bedtools/bedtools_summary/bedtools_summary" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -237,134 +237,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/executable/bedtools/bedtools_summary/bedtools_summary b/target/executable/bedtools/bedtools_summary/bedtools_summary index c5e58c69..6439ec0d 100755 --- a/target/executable/bedtools/bedtools_summary/bedtools_summary +++ b/target/executable/bedtools/bedtools_summary/bedtools_summary @@ -452,9 +452,9 @@ RUN bedtools --version 2>&1 | head -1 | sed 's/.*bedtools v/bedtools: /' > /var/ LABEL org.opencontainers.image.authors="Robrecht Cannoodt" LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_summary" -LABEL org.opencontainers.image.created="2025-09-17T07:30:39Z" +LABEL org.opencontainers.image.created="2025-09-17T08:36:01Z" LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2" -LABEL org.opencontainers.image.revision="736f18e9887893ca830612b48744fe312fe3c696" +LABEL org.opencontainers.image.revision="666507c86de9150bfbdffdb2dbabc1dbde3c3262" LABEL org.opencontainers.image.version="v0.4.0" VIASHDOCKER diff --git a/target/executable/bedtools/bedtools_tag/.config.vsh.yaml b/target/executable/bedtools/bedtools_tag/.config.vsh.yaml index 139ae22a..8d5190f5 100644 --- a/target/executable/bedtools/bedtools_tag/.config.vsh.yaml +++ b/target/executable/bedtools/bedtools_tag/.config.vsh.yaml @@ -320,7 +320,7 @@ build_info: output: "target/executable/bedtools/bedtools_tag" executable: "target/executable/bedtools/bedtools_tag/bedtools_tag" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -346,134 +346,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/executable/bedtools/bedtools_tag/bedtools_tag b/target/executable/bedtools/bedtools_tag/bedtools_tag index bdba228c..c75af9a2 100755 --- a/target/executable/bedtools/bedtools_tag/bedtools_tag +++ b/target/executable/bedtools/bedtools_tag/bedtools_tag @@ -452,9 +452,9 @@ RUN bedtools --version 2>&1 | head -1 | sed 's/.*bedtools v/bedtools: /' > /var/ LABEL org.opencontainers.image.authors="Robrecht Cannoodt" LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_tag" -LABEL org.opencontainers.image.created="2025-09-17T07:30:39Z" +LABEL org.opencontainers.image.created="2025-09-17T08:36:01Z" LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2" -LABEL org.opencontainers.image.revision="736f18e9887893ca830612b48744fe312fe3c696" +LABEL org.opencontainers.image.revision="666507c86de9150bfbdffdb2dbabc1dbde3c3262" LABEL org.opencontainers.image.version="v0.4.0" VIASHDOCKER diff --git a/target/executable/bedtools/bedtools_unionbedg/.config.vsh.yaml b/target/executable/bedtools/bedtools_unionbedg/.config.vsh.yaml index 192e04cd..d45e2674 100644 --- a/target/executable/bedtools/bedtools_unionbedg/.config.vsh.yaml +++ b/target/executable/bedtools/bedtools_unionbedg/.config.vsh.yaml @@ -201,7 +201,7 @@ build_info: output: "target/executable/bedtools/bedtools_unionbedg" executable: "target/executable/bedtools/bedtools_unionbedg/bedtools_unionbedg" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -227,134 +227,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/executable/bedtools/bedtools_unionbedg/bedtools_unionbedg b/target/executable/bedtools/bedtools_unionbedg/bedtools_unionbedg index 78275809..a77fdb17 100755 --- a/target/executable/bedtools/bedtools_unionbedg/bedtools_unionbedg +++ b/target/executable/bedtools/bedtools_unionbedg/bedtools_unionbedg @@ -452,9 +452,9 @@ RUN bedtools --version 2>&1 | head -1 | sed 's/.*bedtools v/bedtools: /' > /var/ LABEL org.opencontainers.image.authors="Robrecht Cannoodt" LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_unionbedg" -LABEL org.opencontainers.image.created="2025-09-17T07:30:46Z" +LABEL org.opencontainers.image.created="2025-09-17T08:36:08Z" LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2" -LABEL org.opencontainers.image.revision="736f18e9887893ca830612b48744fe312fe3c696" +LABEL org.opencontainers.image.revision="666507c86de9150bfbdffdb2dbabc1dbde3c3262" LABEL org.opencontainers.image.version="v0.4.0" VIASHDOCKER diff --git a/target/executable/bedtools/bedtools_window/.config.vsh.yaml b/target/executable/bedtools/bedtools_window/.config.vsh.yaml index 02640c58..6a4942e2 100644 --- a/target/executable/bedtools/bedtools_window/.config.vsh.yaml +++ b/target/executable/bedtools/bedtools_window/.config.vsh.yaml @@ -366,7 +366,7 @@ build_info: output: "target/executable/bedtools/bedtools_window" executable: "target/executable/bedtools/bedtools_window/bedtools_window" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -392,134 +392,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/executable/bedtools/bedtools_window/bedtools_window b/target/executable/bedtools/bedtools_window/bedtools_window index 9d5c25ec..d40bdff6 100755 --- a/target/executable/bedtools/bedtools_window/bedtools_window +++ b/target/executable/bedtools/bedtools_window/bedtools_window @@ -451,9 +451,9 @@ ENTRYPOINT [] RUN bedtools --version 2>&1 | head -1 | sed 's/.*bedtools v/bedtools: /' > /var/software_versions.txt LABEL org.opencontainers.image.authors="Robrecht Cannoodt" LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_window" -LABEL org.opencontainers.image.created="2025-09-17T07:30:43Z" +LABEL org.opencontainers.image.created="2025-09-17T08:36:05Z" LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2" -LABEL org.opencontainers.image.revision="736f18e9887893ca830612b48744fe312fe3c696" +LABEL org.opencontainers.image.revision="666507c86de9150bfbdffdb2dbabc1dbde3c3262" LABEL org.opencontainers.image.version="v0.4.0" VIASHDOCKER diff --git a/target/executable/bowtie2/bowtie2_align/.config.vsh.yaml b/target/executable/bowtie2/bowtie2_align/.config.vsh.yaml index a28986b0..5e904a2d 100644 --- a/target/executable/bowtie2/bowtie2_align/.config.vsh.yaml +++ b/target/executable/bowtie2/bowtie2_align/.config.vsh.yaml @@ -844,7 +844,7 @@ build_info: output: "target/executable/bowtie2/bowtie2_align" executable: "target/executable/bowtie2/bowtie2_align/bowtie2_align" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -870,134 +870,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/executable/bowtie2/bowtie2_align/bowtie2_align b/target/executable/bowtie2/bowtie2_align/bowtie2_align index 7ba695c7..f7129505 100755 --- a/target/executable/bowtie2/bowtie2_align/bowtie2_align +++ b/target/executable/bowtie2/bowtie2_align/bowtie2_align @@ -452,9 +452,9 @@ RUN bowtie2 --version 2>&1 | head -1 | sed 's/.*version /bowtie2: /' > /var/soft LABEL org.opencontainers.image.authors="Robrecht Cannoodt" LABEL org.opencontainers.image.description="Companion container for running component bowtie2 bowtie2_align" -LABEL org.opencontainers.image.created="2025-09-17T07:30:41Z" +LABEL org.opencontainers.image.created="2025-09-17T08:36:03Z" LABEL org.opencontainers.image.source="https://github.com/BenLangmead/bowtie2" -LABEL org.opencontainers.image.revision="736f18e9887893ca830612b48744fe312fe3c696" +LABEL org.opencontainers.image.revision="666507c86de9150bfbdffdb2dbabc1dbde3c3262" LABEL org.opencontainers.image.version="v0.4.0" VIASHDOCKER diff --git a/target/executable/bowtie2/bowtie2_build/.config.vsh.yaml b/target/executable/bowtie2/bowtie2_build/.config.vsh.yaml index 7145733e..cd2df0ec 100644 --- a/target/executable/bowtie2/bowtie2_build/.config.vsh.yaml +++ b/target/executable/bowtie2/bowtie2_build/.config.vsh.yaml @@ -307,7 +307,7 @@ build_info: output: "target/executable/bowtie2/bowtie2_build" executable: "target/executable/bowtie2/bowtie2_build/bowtie2_build" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -333,134 +333,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/executable/bowtie2/bowtie2_build/bowtie2_build b/target/executable/bowtie2/bowtie2_build/bowtie2_build index 9421ca79..504cac2b 100755 --- a/target/executable/bowtie2/bowtie2_build/bowtie2_build +++ b/target/executable/bowtie2/bowtie2_build/bowtie2_build @@ -452,9 +452,9 @@ RUN bowtie2-build --version 2>&1 | head -1 | sed 's/.*version /bowtie2-build: /' LABEL org.opencontainers.image.authors="Robrecht Cannoodt" LABEL org.opencontainers.image.description="Companion container for running component bowtie2 bowtie2_build" -LABEL org.opencontainers.image.created="2025-09-17T07:30:41Z" +LABEL org.opencontainers.image.created="2025-09-17T08:36:03Z" LABEL org.opencontainers.image.source="https://github.com/BenLangmead/bowtie2" -LABEL org.opencontainers.image.revision="736f18e9887893ca830612b48744fe312fe3c696" +LABEL org.opencontainers.image.revision="666507c86de9150bfbdffdb2dbabc1dbde3c3262" LABEL org.opencontainers.image.version="v0.4.0" VIASHDOCKER diff --git a/target/executable/bowtie2/bowtie2_inspect/.config.vsh.yaml b/target/executable/bowtie2/bowtie2_inspect/.config.vsh.yaml index fcf04039..eabfe373 100644 --- a/target/executable/bowtie2/bowtie2_inspect/.config.vsh.yaml +++ b/target/executable/bowtie2/bowtie2_inspect/.config.vsh.yaml @@ -219,7 +219,7 @@ build_info: output: "target/executable/bowtie2/bowtie2_inspect" executable: "target/executable/bowtie2/bowtie2_inspect/bowtie2_inspect" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -245,134 +245,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/executable/bowtie2/bowtie2_inspect/bowtie2_inspect b/target/executable/bowtie2/bowtie2_inspect/bowtie2_inspect index 0c72ef50..32bf7962 100755 --- a/target/executable/bowtie2/bowtie2_inspect/bowtie2_inspect +++ b/target/executable/bowtie2/bowtie2_inspect/bowtie2_inspect @@ -452,9 +452,9 @@ RUN bowtie2-inspect --help 2>&1 | head -1 | sed 's/.*version /bowtie2-inspect: / LABEL org.opencontainers.image.authors="Robrecht Cannoodt" LABEL org.opencontainers.image.description="Companion container for running component bowtie2 bowtie2_inspect" -LABEL org.opencontainers.image.created="2025-09-17T07:30:41Z" +LABEL org.opencontainers.image.created="2025-09-17T08:36:03Z" LABEL org.opencontainers.image.source="https://github.com/BenLangmead/bowtie2" -LABEL org.opencontainers.image.revision="736f18e9887893ca830612b48744fe312fe3c696" +LABEL org.opencontainers.image.revision="666507c86de9150bfbdffdb2dbabc1dbde3c3262" LABEL org.opencontainers.image.version="v0.4.0" VIASHDOCKER diff --git a/target/executable/busco/busco_download_datasets/.config.vsh.yaml b/target/executable/busco/busco_download_datasets/.config.vsh.yaml index 19133bd0..5c73dc5a 100644 --- a/target/executable/busco/busco_download_datasets/.config.vsh.yaml +++ b/target/executable/busco/busco_download_datasets/.config.vsh.yaml @@ -161,7 +161,7 @@ build_info: output: "target/executable/busco/busco_download_datasets" executable: "target/executable/busco/busco_download_datasets/busco_download_datasets" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -187,134 +187,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/executable/busco/busco_download_datasets/busco_download_datasets b/target/executable/busco/busco_download_datasets/busco_download_datasets index f0552c75..e135e7c5 100755 --- a/target/executable/busco/busco_download_datasets/busco_download_datasets +++ b/target/executable/busco/busco_download_datasets/busco_download_datasets @@ -452,9 +452,9 @@ RUN busco --version | sed 's/BUSCO\s\(.*\)/busco: "\1"/' > /var/software_version LABEL org.opencontainers.image.authors="Dorien Roosen" LABEL org.opencontainers.image.description="Companion container for running component busco busco_download_datasets" -LABEL org.opencontainers.image.created="2025-09-17T07:30:48Z" +LABEL org.opencontainers.image.created="2025-09-17T08:36:11Z" LABEL org.opencontainers.image.source="https://gitlab.com/ezlab/busco" -LABEL org.opencontainers.image.revision="736f18e9887893ca830612b48744fe312fe3c696" +LABEL org.opencontainers.image.revision="666507c86de9150bfbdffdb2dbabc1dbde3c3262" LABEL org.opencontainers.image.version="v0.4.0" VIASHDOCKER diff --git a/target/executable/busco/busco_list_datasets/.config.vsh.yaml b/target/executable/busco/busco_list_datasets/.config.vsh.yaml index 12349996..6589aba0 100644 --- a/target/executable/busco/busco_list_datasets/.config.vsh.yaml +++ b/target/executable/busco/busco_list_datasets/.config.vsh.yaml @@ -148,7 +148,7 @@ build_info: output: "target/executable/busco/busco_list_datasets" executable: "target/executable/busco/busco_list_datasets/busco_list_datasets" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -174,134 +174,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/executable/busco/busco_list_datasets/busco_list_datasets b/target/executable/busco/busco_list_datasets/busco_list_datasets index 4bcf77a4..39253b7a 100755 --- a/target/executable/busco/busco_list_datasets/busco_list_datasets +++ b/target/executable/busco/busco_list_datasets/busco_list_datasets @@ -452,9 +452,9 @@ RUN busco --version | sed 's/BUSCO\s\(.*\)/busco: "\1"/' > /var/software_version LABEL org.opencontainers.image.authors="Dorien Roosen" LABEL org.opencontainers.image.description="Companion container for running component busco busco_list_datasets" -LABEL org.opencontainers.image.created="2025-09-17T07:30:32Z" +LABEL org.opencontainers.image.created="2025-09-17T08:35:54Z" LABEL org.opencontainers.image.source="https://gitlab.com/ezlab/busco" -LABEL org.opencontainers.image.revision="736f18e9887893ca830612b48744fe312fe3c696" +LABEL org.opencontainers.image.revision="666507c86de9150bfbdffdb2dbabc1dbde3c3262" LABEL org.opencontainers.image.version="v0.4.0" VIASHDOCKER diff --git a/target/executable/busco/busco_run/.config.vsh.yaml b/target/executable/busco/busco_run/.config.vsh.yaml index f0dbadde..585002a1 100644 --- a/target/executable/busco/busco_run/.config.vsh.yaml +++ b/target/executable/busco/busco_run/.config.vsh.yaml @@ -426,7 +426,7 @@ build_info: output: "target/executable/busco/busco_run" executable: "target/executable/busco/busco_run/busco_run" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -452,134 +452,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/executable/busco/busco_run/busco_run b/target/executable/busco/busco_run/busco_run index 9ff4cc32..172018b6 100755 --- a/target/executable/busco/busco_run/busco_run +++ b/target/executable/busco/busco_run/busco_run @@ -452,9 +452,9 @@ RUN busco --version | sed 's/BUSCO\s\(.*\)/busco: "\1"/' > /var/software_version LABEL org.opencontainers.image.authors="Dorien Roosen" LABEL org.opencontainers.image.description="Companion container for running component busco busco_run" -LABEL org.opencontainers.image.created="2025-09-17T07:30:48Z" +LABEL org.opencontainers.image.created="2025-09-17T08:36:10Z" LABEL org.opencontainers.image.source="https://gitlab.com/ezlab/busco" -LABEL org.opencontainers.image.revision="736f18e9887893ca830612b48744fe312fe3c696" +LABEL org.opencontainers.image.revision="666507c86de9150bfbdffdb2dbabc1dbde3c3262" LABEL org.opencontainers.image.version="v0.4.0" VIASHDOCKER diff --git a/target/executable/bwa/bwa_aln/.config.vsh.yaml b/target/executable/bwa/bwa_aln/.config.vsh.yaml index 8d0a291a..266c8b28 100644 --- a/target/executable/bwa/bwa_aln/.config.vsh.yaml +++ b/target/executable/bwa/bwa_aln/.config.vsh.yaml @@ -426,7 +426,7 @@ build_info: output: "target/executable/bwa/bwa_aln" executable: "target/executable/bwa/bwa_aln/bwa_aln" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -452,134 +452,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/executable/bwa/bwa_aln/bwa_aln b/target/executable/bwa/bwa_aln/bwa_aln index d373ed88..17322805 100755 --- a/target/executable/bwa/bwa_aln/bwa_aln +++ b/target/executable/bwa/bwa_aln/bwa_aln @@ -453,9 +453,9 @@ RUN bwa 2>&1 | grep "Version:" | sed 's/Version: /bwa: /' > /var/software_versio LABEL org.opencontainers.image.authors="Robrecht Cannoodt, Toni Verbeiren" LABEL org.opencontainers.image.description="Companion container for running component bwa bwa_aln" -LABEL org.opencontainers.image.created="2025-09-17T07:30:33Z" +LABEL org.opencontainers.image.created="2025-09-17T08:35:55Z" LABEL org.opencontainers.image.source="https://github.com/lh3/bwa" -LABEL org.opencontainers.image.revision="736f18e9887893ca830612b48744fe312fe3c696" +LABEL org.opencontainers.image.revision="666507c86de9150bfbdffdb2dbabc1dbde3c3262" LABEL org.opencontainers.image.version="v0.4.0" VIASHDOCKER diff --git a/target/executable/bwa/bwa_index/.config.vsh.yaml b/target/executable/bwa/bwa_index/.config.vsh.yaml index 3338866d..13b434b1 100644 --- a/target/executable/bwa/bwa_index/.config.vsh.yaml +++ b/target/executable/bwa/bwa_index/.config.vsh.yaml @@ -221,7 +221,7 @@ build_info: output: "target/executable/bwa/bwa_index" executable: "target/executable/bwa/bwa_index/bwa_index" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -247,134 +247,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/executable/bwa/bwa_index/bwa_index b/target/executable/bwa/bwa_index/bwa_index index 8b66001a..33027c5b 100755 --- a/target/executable/bwa/bwa_index/bwa_index +++ b/target/executable/bwa/bwa_index/bwa_index @@ -453,9 +453,9 @@ RUN bwa 2>&1 | grep "Version:" | sed 's/Version: /bwa: /' > /var/software_versio LABEL org.opencontainers.image.authors="Robrecht Cannoodt, Toni Verbeiren" LABEL org.opencontainers.image.description="Companion container for running component bwa bwa_index" -LABEL org.opencontainers.image.created="2025-09-17T07:30:32Z" +LABEL org.opencontainers.image.created="2025-09-17T08:35:54Z" LABEL org.opencontainers.image.source="https://github.com/lh3/bwa" -LABEL org.opencontainers.image.revision="736f18e9887893ca830612b48744fe312fe3c696" +LABEL org.opencontainers.image.revision="666507c86de9150bfbdffdb2dbabc1dbde3c3262" LABEL org.opencontainers.image.version="v0.4.0" VIASHDOCKER diff --git a/target/executable/bwa/bwa_mem/.config.vsh.yaml b/target/executable/bwa/bwa_mem/.config.vsh.yaml index 7aa41008..62e0eb65 100644 --- a/target/executable/bwa/bwa_mem/.config.vsh.yaml +++ b/target/executable/bwa/bwa_mem/.config.vsh.yaml @@ -587,7 +587,7 @@ build_info: output: "target/executable/bwa/bwa_mem" executable: "target/executable/bwa/bwa_mem/bwa_mem" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -613,134 +613,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/executable/bwa/bwa_mem/bwa_mem b/target/executable/bwa/bwa_mem/bwa_mem index 103d47db..33925436 100755 --- a/target/executable/bwa/bwa_mem/bwa_mem +++ b/target/executable/bwa/bwa_mem/bwa_mem @@ -453,9 +453,9 @@ RUN bwa 2>&1 | grep "Version:" | sed 's/Version: /bwa: /' > /var/software_versio LABEL org.opencontainers.image.authors="Robrecht Cannoodt, Toni Verbeiren" LABEL org.opencontainers.image.description="Companion container for running component bwa bwa_mem" -LABEL org.opencontainers.image.created="2025-09-17T07:30:33Z" +LABEL org.opencontainers.image.created="2025-09-17T08:35:55Z" LABEL org.opencontainers.image.source="https://github.com/lh3/bwa" -LABEL org.opencontainers.image.revision="736f18e9887893ca830612b48744fe312fe3c696" +LABEL org.opencontainers.image.revision="666507c86de9150bfbdffdb2dbabc1dbde3c3262" LABEL org.opencontainers.image.version="v0.4.0" VIASHDOCKER diff --git a/target/executable/bwa/bwa_sampe/.config.vsh.yaml b/target/executable/bwa/bwa_sampe/.config.vsh.yaml index 516e580a..308bad6e 100644 --- a/target/executable/bwa/bwa_sampe/.config.vsh.yaml +++ b/target/executable/bwa/bwa_sampe/.config.vsh.yaml @@ -327,7 +327,7 @@ build_info: output: "target/executable/bwa/bwa_sampe" executable: "target/executable/bwa/bwa_sampe/bwa_sampe" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -353,134 +353,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/executable/bwa/bwa_sampe/bwa_sampe b/target/executable/bwa/bwa_sampe/bwa_sampe index d890a45f..94d3d2d2 100755 --- a/target/executable/bwa/bwa_sampe/bwa_sampe +++ b/target/executable/bwa/bwa_sampe/bwa_sampe @@ -453,9 +453,9 @@ RUN bwa 2>&1 | grep "Version:" | sed 's/Version: /bwa: /' > /var/software_versio LABEL org.opencontainers.image.authors="Robrecht Cannoodt, Toni Verbeiren" LABEL org.opencontainers.image.description="Companion container for running component bwa bwa_sampe" -LABEL org.opencontainers.image.created="2025-09-17T07:30:33Z" +LABEL org.opencontainers.image.created="2025-09-17T08:35:55Z" LABEL org.opencontainers.image.source="https://github.com/lh3/bwa" -LABEL org.opencontainers.image.revision="736f18e9887893ca830612b48744fe312fe3c696" +LABEL org.opencontainers.image.revision="666507c86de9150bfbdffdb2dbabc1dbde3c3262" LABEL org.opencontainers.image.version="v0.4.0" VIASHDOCKER diff --git a/target/executable/bwa/bwa_samse/.config.vsh.yaml b/target/executable/bwa/bwa_samse/.config.vsh.yaml index c24deee0..7e70cda7 100644 --- a/target/executable/bwa/bwa_samse/.config.vsh.yaml +++ b/target/executable/bwa/bwa_samse/.config.vsh.yaml @@ -232,7 +232,7 @@ build_info: output: "target/executable/bwa/bwa_samse" executable: "target/executable/bwa/bwa_samse/bwa_samse" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -258,134 +258,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/executable/bwa/bwa_samse/bwa_samse b/target/executable/bwa/bwa_samse/bwa_samse index 15a36c3f..3abcec23 100755 --- a/target/executable/bwa/bwa_samse/bwa_samse +++ b/target/executable/bwa/bwa_samse/bwa_samse @@ -453,9 +453,9 @@ RUN bwa 2>&1 | grep "Version:" | sed 's/Version: /bwa: /' > /var/software_versio LABEL org.opencontainers.image.authors="Robrecht Cannoodt, Toni Verbeiren" LABEL org.opencontainers.image.description="Companion container for running component bwa bwa_samse" -LABEL org.opencontainers.image.created="2025-09-17T07:30:33Z" +LABEL org.opencontainers.image.created="2025-09-17T08:35:55Z" LABEL org.opencontainers.image.source="https://github.com/lh3/bwa" -LABEL org.opencontainers.image.revision="736f18e9887893ca830612b48744fe312fe3c696" +LABEL org.opencontainers.image.revision="666507c86de9150bfbdffdb2dbabc1dbde3c3262" LABEL org.opencontainers.image.version="v0.4.0" VIASHDOCKER diff --git a/target/executable/cellranger/cellranger_count/.config.vsh.yaml b/target/executable/cellranger/cellranger_count/.config.vsh.yaml index eeabe048..3694d6db 100644 --- a/target/executable/cellranger/cellranger_count/.config.vsh.yaml +++ b/target/executable/cellranger/cellranger_count/.config.vsh.yaml @@ -374,7 +374,7 @@ build_info: output: "target/executable/cellranger/cellranger_count" executable: "target/executable/cellranger/cellranger_count/cellranger_count" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -400,134 +400,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/executable/cellranger/cellranger_count/cellranger_count b/target/executable/cellranger/cellranger_count/cellranger_count index 14471a0b..9203208d 100755 --- a/target/executable/cellranger/cellranger_count/cellranger_count +++ b/target/executable/cellranger/cellranger_count/cellranger_count @@ -456,9 +456,9 @@ RUN cellranger --version | sed 's/ cellranger-/: /' > /var/software_versions.txt LABEL org.opencontainers.image.authors="Emma Rousseau, Robrecht Cannoodt" LABEL org.opencontainers.image.description="Companion container for running component cellranger cellranger_count" -LABEL org.opencontainers.image.created="2025-09-17T07:30:37Z" +LABEL org.opencontainers.image.created="2025-09-17T08:35:59Z" LABEL org.opencontainers.image.source="https://github.com/10XGenomics/cellranger/blob/main/bin/sc_rna/count" -LABEL org.opencontainers.image.revision="736f18e9887893ca830612b48744fe312fe3c696" +LABEL org.opencontainers.image.revision="666507c86de9150bfbdffdb2dbabc1dbde3c3262" LABEL org.opencontainers.image.version="v0.4.0" VIASHDOCKER diff --git a/target/executable/cellranger/cellranger_mkref/.config.vsh.yaml b/target/executable/cellranger/cellranger_mkref/.config.vsh.yaml index 2519501b..337bbb4b 100644 --- a/target/executable/cellranger/cellranger_mkref/.config.vsh.yaml +++ b/target/executable/cellranger/cellranger_mkref/.config.vsh.yaml @@ -197,7 +197,7 @@ build_info: output: "target/executable/cellranger/cellranger_mkref" executable: "target/executable/cellranger/cellranger_mkref/cellranger_mkref" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -223,134 +223,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/executable/cellranger/cellranger_mkref/cellranger_mkref b/target/executable/cellranger/cellranger_mkref/cellranger_mkref index 3c375d3d..aa920a73 100755 --- a/target/executable/cellranger/cellranger_mkref/cellranger_mkref +++ b/target/executable/cellranger/cellranger_mkref/cellranger_mkref @@ -454,9 +454,9 @@ RUN apt-get update && \ LABEL org.opencontainers.image.authors="Emma Rousseau" LABEL org.opencontainers.image.description="Companion container for running component cellranger cellranger_mkref" -LABEL org.opencontainers.image.created="2025-09-17T07:30:37Z" +LABEL org.opencontainers.image.created="2025-09-17T08:35:59Z" LABEL org.opencontainers.image.source="https://github.com/10XGenomics/cellranger/blob/main/lib/python/cellranger/reference_builder.py" -LABEL org.opencontainers.image.revision="736f18e9887893ca830612b48744fe312fe3c696" +LABEL org.opencontainers.image.revision="666507c86de9150bfbdffdb2dbabc1dbde3c3262" LABEL org.opencontainers.image.version="v0.4.0" VIASHDOCKER diff --git a/target/executable/cutadapt/.config.vsh.yaml b/target/executable/cutadapt/.config.vsh.yaml index faa6640a..5ec7e22c 100644 --- a/target/executable/cutadapt/.config.vsh.yaml +++ b/target/executable/cutadapt/.config.vsh.yaml @@ -743,7 +743,7 @@ build_info: output: "target/executable/cutadapt" executable: "target/executable/cutadapt/cutadapt" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -769,134 +769,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/executable/cutadapt/cutadapt b/target/executable/cutadapt/cutadapt index 01788409..7d083d5f 100755 --- a/target/executable/cutadapt/cutadapt +++ b/target/executable/cutadapt/cutadapt @@ -455,9 +455,9 @@ RUN cutadapt --version | sed 's/\(.*\)/cutadapt: "\1"/' > /var/software_versions LABEL org.opencontainers.image.authors="Toni Verbeiren" LABEL org.opencontainers.image.description="Companion container for running component cutadapt" -LABEL org.opencontainers.image.created="2025-09-17T07:30:38Z" +LABEL org.opencontainers.image.created="2025-09-17T08:36:00Z" LABEL org.opencontainers.image.source="https://github.com/marcelm/cutadapt" -LABEL org.opencontainers.image.revision="736f18e9887893ca830612b48744fe312fe3c696" +LABEL org.opencontainers.image.revision="666507c86de9150bfbdffdb2dbabc1dbde3c3262" LABEL org.opencontainers.image.version="v0.4.0" VIASHDOCKER diff --git a/target/executable/falco/.config.vsh.yaml b/target/executable/falco/.config.vsh.yaml index 90c8dcb2..3c7fbf32 100644 --- a/target/executable/falco/.config.vsh.yaml +++ b/target/executable/falco/.config.vsh.yaml @@ -321,7 +321,7 @@ build_info: output: "target/executable/falco" executable: "target/executable/falco/falco" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -347,134 +347,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/executable/falco/falco b/target/executable/falco/falco index 34fb79f0..a725bb5c 100755 --- a/target/executable/falco/falco +++ b/target/executable/falco/falco @@ -464,9 +464,9 @@ RUN echo "falco: \"$(falco -v | sed -n 's/^falco //p')\"" > /var/software_versio LABEL org.opencontainers.image.authors="Toni Verbeiren" LABEL org.opencontainers.image.description="Companion container for running component falco" -LABEL org.opencontainers.image.created="2025-09-17T07:30:40Z" +LABEL org.opencontainers.image.created="2025-09-17T08:36:02Z" LABEL org.opencontainers.image.source="https://github.com/smithlabcode/falco" -LABEL org.opencontainers.image.revision="736f18e9887893ca830612b48744fe312fe3c696" +LABEL org.opencontainers.image.revision="666507c86de9150bfbdffdb2dbabc1dbde3c3262" LABEL org.opencontainers.image.version="v0.4.0" VIASHDOCKER diff --git a/target/executable/fastp/.config.vsh.yaml b/target/executable/fastp/.config.vsh.yaml index f7842ab5..2b87809b 100644 --- a/target/executable/fastp/.config.vsh.yaml +++ b/target/executable/fastp/.config.vsh.yaml @@ -1086,7 +1086,7 @@ build_info: output: "target/executable/fastp" executable: "target/executable/fastp/fastp" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -1112,134 +1112,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/executable/fastp/fastp b/target/executable/fastp/fastp index ed24ea53..db246d01 100755 --- a/target/executable/fastp/fastp +++ b/target/executable/fastp/fastp @@ -452,9 +452,9 @@ RUN fastp --version 2>&1 | sed 's# #: "#;s#$#"#' > /var/software_versions.txt LABEL org.opencontainers.image.authors="Robrecht Cannoodt" LABEL org.opencontainers.image.description="Companion container for running component fastp" -LABEL org.opencontainers.image.created="2025-09-17T07:30:37Z" +LABEL org.opencontainers.image.created="2025-09-17T08:35:59Z" LABEL org.opencontainers.image.source="https://github.com/OpenGene/fastp" -LABEL org.opencontainers.image.revision="736f18e9887893ca830612b48744fe312fe3c696" +LABEL org.opencontainers.image.revision="666507c86de9150bfbdffdb2dbabc1dbde3c3262" LABEL org.opencontainers.image.version="v0.4.0" VIASHDOCKER diff --git a/target/executable/fastqc/.config.vsh.yaml b/target/executable/fastqc/.config.vsh.yaml index a2cf69c7..f0893f6e 100644 --- a/target/executable/fastqc/.config.vsh.yaml +++ b/target/executable/fastqc/.config.vsh.yaml @@ -351,7 +351,7 @@ build_info: output: "target/executable/fastqc" executable: "target/executable/fastqc/fastqc" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -377,134 +377,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/executable/fastqc/fastqc b/target/executable/fastqc/fastqc index 835bcf50..b5341ce4 100755 --- a/target/executable/fastqc/fastqc +++ b/target/executable/fastqc/fastqc @@ -452,9 +452,9 @@ RUN echo "fastqc: $(fastqc --version | sed -n 's/^FastQC //p')" > /var/software_ LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo" LABEL org.opencontainers.image.description="Companion container for running component fastqc" -LABEL org.opencontainers.image.created="2025-09-17T07:30:33Z" +LABEL org.opencontainers.image.created="2025-09-17T08:35:55Z" LABEL org.opencontainers.image.source="https://github.com/s-andrews/FastQC" -LABEL org.opencontainers.image.revision="736f18e9887893ca830612b48744fe312fe3c696" +LABEL org.opencontainers.image.revision="666507c86de9150bfbdffdb2dbabc1dbde3c3262" LABEL org.opencontainers.image.version="v0.4.0" VIASHDOCKER diff --git a/target/executable/featurecounts/.config.vsh.yaml b/target/executable/featurecounts/.config.vsh.yaml index ddbf1e47..c82f0037 100644 --- a/target/executable/featurecounts/.config.vsh.yaml +++ b/target/executable/featurecounts/.config.vsh.yaml @@ -644,7 +644,7 @@ build_info: output: "target/executable/featurecounts" executable: "target/executable/featurecounts/featurecounts" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -670,134 +670,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/executable/featurecounts/featurecounts b/target/executable/featurecounts/featurecounts index fdaf9284..aed3da1e 100755 --- a/target/executable/featurecounts/featurecounts +++ b/target/executable/featurecounts/featurecounts @@ -452,9 +452,9 @@ RUN featureCounts -v 2>&1 | sed 's/featureCounts v\([0-9.]*\)/featureCounts: \1/ LABEL org.opencontainers.image.authors="Sai Nirmayi Yasa" LABEL org.opencontainers.image.description="Companion container for running component featurecounts" -LABEL org.opencontainers.image.created="2025-09-17T07:30:44Z" +LABEL org.opencontainers.image.created="2025-09-17T08:36:06Z" LABEL org.opencontainers.image.source="https://github.com/ShiLab-Bioinformatics/subread" -LABEL org.opencontainers.image.revision="736f18e9887893ca830612b48744fe312fe3c696" +LABEL org.opencontainers.image.revision="666507c86de9150bfbdffdb2dbabc1dbde3c3262" LABEL org.opencontainers.image.version="v0.4.0" VIASHDOCKER diff --git a/target/executable/fq/fq_filter/.config.vsh.yaml b/target/executable/fq/fq_filter/.config.vsh.yaml index e90321e5..9566112f 100644 --- a/target/executable/fq/fq_filter/.config.vsh.yaml +++ b/target/executable/fq/fq_filter/.config.vsh.yaml @@ -179,7 +179,7 @@ build_info: output: "target/executable/fq/fq_filter" executable: "target/executable/fq/fq_filter/fq_filter" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -205,134 +205,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/executable/fq/fq_filter/fq_filter b/target/executable/fq/fq_filter/fq_filter index dd5426b3..65298a35 100755 --- a/target/executable/fq/fq_filter/fq_filter +++ b/target/executable/fq/fq_filter/fq_filter @@ -452,9 +452,9 @@ RUN fq -V | sed 's#fq \([0-9.]*\) .*#fq: \1#' > /var/software_versions.txt LABEL org.opencontainers.image.authors="Robrecht Cannoodt" LABEL org.opencontainers.image.description="Companion container for running component fq fq_filter" -LABEL org.opencontainers.image.created="2025-09-17T07:30:40Z" +LABEL org.opencontainers.image.created="2025-09-17T08:36:02Z" LABEL org.opencontainers.image.source="https://github.com/stjude-rust-labs/fq" -LABEL org.opencontainers.image.revision="736f18e9887893ca830612b48744fe312fe3c696" +LABEL org.opencontainers.image.revision="666507c86de9150bfbdffdb2dbabc1dbde3c3262" LABEL org.opencontainers.image.version="v0.4.0" VIASHDOCKER diff --git a/target/executable/fq/fq_generate/.config.vsh.yaml b/target/executable/fq/fq_generate/.config.vsh.yaml index e49927e1..8f874c20 100644 --- a/target/executable/fq/fq_generate/.config.vsh.yaml +++ b/target/executable/fq/fq_generate/.config.vsh.yaml @@ -203,7 +203,7 @@ build_info: output: "target/executable/fq/fq_generate" executable: "target/executable/fq/fq_generate/fq_generate" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -229,134 +229,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/executable/fq/fq_generate/fq_generate b/target/executable/fq/fq_generate/fq_generate index 9cf6d7bf..369f7ee9 100755 --- a/target/executable/fq/fq_generate/fq_generate +++ b/target/executable/fq/fq_generate/fq_generate @@ -452,9 +452,9 @@ RUN fq --version | sed 's/^/fq: /' > /var/software_versions.txt LABEL org.opencontainers.image.authors="Robrecht Cannoodt" LABEL org.opencontainers.image.description="Companion container for running component fq fq_generate" -LABEL org.opencontainers.image.created="2025-09-17T07:30:40Z" +LABEL org.opencontainers.image.created="2025-09-17T08:36:02Z" LABEL org.opencontainers.image.source="https://github.com/stjude-rust-labs/fq" -LABEL org.opencontainers.image.revision="736f18e9887893ca830612b48744fe312fe3c696" +LABEL org.opencontainers.image.revision="666507c86de9150bfbdffdb2dbabc1dbde3c3262" LABEL org.opencontainers.image.version="v0.4.0" VIASHDOCKER diff --git a/target/executable/fq/fq_lint/.config.vsh.yaml b/target/executable/fq/fq_lint/.config.vsh.yaml index 951e08d5..9c78576d 100644 --- a/target/executable/fq/fq_lint/.config.vsh.yaml +++ b/target/executable/fq/fq_lint/.config.vsh.yaml @@ -230,7 +230,7 @@ build_info: output: "target/executable/fq/fq_lint" executable: "target/executable/fq/fq_lint/fq_lint" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -256,134 +256,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/executable/fq/fq_lint/fq_lint b/target/executable/fq/fq_lint/fq_lint index 73dce004..2268ee61 100755 --- a/target/executable/fq/fq_lint/fq_lint +++ b/target/executable/fq/fq_lint/fq_lint @@ -453,9 +453,9 @@ RUN fq -V | sed 's#fq \([0-9.]*\) .*#fq: \1#' > /var/software_versions.txt LABEL org.opencontainers.image.authors="Robrecht Cannoodt, Emma Rousseau" LABEL org.opencontainers.image.description="Companion container for running component fq fq_lint" -LABEL org.opencontainers.image.created="2025-09-17T07:30:40Z" +LABEL org.opencontainers.image.created="2025-09-17T08:36:02Z" LABEL org.opencontainers.image.source="https://github.com/stjude-rust-labs/fq" -LABEL org.opencontainers.image.revision="736f18e9887893ca830612b48744fe312fe3c696" +LABEL org.opencontainers.image.revision="666507c86de9150bfbdffdb2dbabc1dbde3c3262" LABEL org.opencontainers.image.version="v0.4.0" VIASHDOCKER diff --git a/target/executable/fq/fq_subsample/.config.vsh.yaml b/target/executable/fq/fq_subsample/.config.vsh.yaml index 94d8268a..b691bb77 100644 --- a/target/executable/fq/fq_subsample/.config.vsh.yaml +++ b/target/executable/fq/fq_subsample/.config.vsh.yaml @@ -215,7 +215,7 @@ build_info: output: "target/executable/fq/fq_subsample" executable: "target/executable/fq/fq_subsample/fq_subsample" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -241,134 +241,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/executable/fq/fq_subsample/fq_subsample b/target/executable/fq/fq_subsample/fq_subsample index ec92dc9e..d9913940 100755 --- a/target/executable/fq/fq_subsample/fq_subsample +++ b/target/executable/fq/fq_subsample/fq_subsample @@ -453,9 +453,9 @@ RUN fq -V | sed 's#fq \([0-9.]*\) .*#fq: \1#' > /var/software_versions.txt LABEL org.opencontainers.image.authors="Robrecht Cannoodt, Emma Rousseau" LABEL org.opencontainers.image.description="Companion container for running component fq fq_subsample" -LABEL org.opencontainers.image.created="2025-09-17T07:30:39Z" +LABEL org.opencontainers.image.created="2025-09-17T08:36:01Z" LABEL org.opencontainers.image.source="https://github.com/stjude-rust-labs/fq" -LABEL org.opencontainers.image.revision="736f18e9887893ca830612b48744fe312fe3c696" +LABEL org.opencontainers.image.revision="666507c86de9150bfbdffdb2dbabc1dbde3c3262" LABEL org.opencontainers.image.version="v0.4.0" VIASHDOCKER diff --git a/target/executable/gffread/.config.vsh.yaml b/target/executable/gffread/.config.vsh.yaml index 778b0993..81dd9be4 100644 --- a/target/executable/gffread/.config.vsh.yaml +++ b/target/executable/gffread/.config.vsh.yaml @@ -683,7 +683,7 @@ build_info: output: "target/executable/gffread" executable: "target/executable/gffread/gffread" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -709,134 +709,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/executable/gffread/gffread b/target/executable/gffread/gffread index d0d24c90..de9a2ecf 100755 --- a/target/executable/gffread/gffread +++ b/target/executable/gffread/gffread @@ -452,9 +452,9 @@ RUN echo "gffread: \"$(gffread --version 2>&1)\"" > /var/software_versions.txt LABEL org.opencontainers.image.authors="Emma Rousseau" LABEL org.opencontainers.image.description="Companion container for running component gffread" -LABEL org.opencontainers.image.created="2025-09-17T07:30:36Z" +LABEL org.opencontainers.image.created="2025-09-17T08:35:58Z" LABEL org.opencontainers.image.source="https://github.com/gpertea/gffread" -LABEL org.opencontainers.image.revision="736f18e9887893ca830612b48744fe312fe3c696" +LABEL org.opencontainers.image.revision="666507c86de9150bfbdffdb2dbabc1dbde3c3262" LABEL org.opencontainers.image.version="v0.4.0" VIASHDOCKER diff --git a/target/executable/kallisto/kallisto_index/.config.vsh.yaml b/target/executable/kallisto/kallisto_index/.config.vsh.yaml index dcd0fecc..037cca32 100644 --- a/target/executable/kallisto/kallisto_index/.config.vsh.yaml +++ b/target/executable/kallisto/kallisto_index/.config.vsh.yaml @@ -221,7 +221,7 @@ build_info: output: "target/executable/kallisto/kallisto_index" executable: "target/executable/kallisto/kallisto_index/kallisto_index" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -247,134 +247,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/executable/kallisto/kallisto_index/kallisto_index b/target/executable/kallisto/kallisto_index/kallisto_index index 96926e05..a00c1239 100755 --- a/target/executable/kallisto/kallisto_index/kallisto_index +++ b/target/executable/kallisto/kallisto_index/kallisto_index @@ -452,9 +452,9 @@ tar -xzf kallisto_linux-v0.50.1.tar.gz && \ mv kallisto/kallisto /usr/local/bin/ LABEL org.opencontainers.image.description="Companion container for running component kallisto kallisto_index" -LABEL org.opencontainers.image.created="2025-09-17T07:30:35Z" +LABEL org.opencontainers.image.created="2025-09-17T08:35:57Z" LABEL org.opencontainers.image.source="https://github.com/pachterlab/kallisto" -LABEL org.opencontainers.image.revision="736f18e9887893ca830612b48744fe312fe3c696" +LABEL org.opencontainers.image.revision="666507c86de9150bfbdffdb2dbabc1dbde3c3262" LABEL org.opencontainers.image.version="v0.4.0" VIASHDOCKER diff --git a/target/executable/kallisto/kallisto_quant/.config.vsh.yaml b/target/executable/kallisto/kallisto_quant/.config.vsh.yaml index 70019a79..d3494bed 100644 --- a/target/executable/kallisto/kallisto_quant/.config.vsh.yaml +++ b/target/executable/kallisto/kallisto_quant/.config.vsh.yaml @@ -249,7 +249,7 @@ build_info: output: "target/executable/kallisto/kallisto_quant" executable: "target/executable/kallisto/kallisto_quant/kallisto_quant" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -275,134 +275,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/executable/kallisto/kallisto_quant/kallisto_quant b/target/executable/kallisto/kallisto_quant/kallisto_quant index 77c6926c..2a4203b2 100755 --- a/target/executable/kallisto/kallisto_quant/kallisto_quant +++ b/target/executable/kallisto/kallisto_quant/kallisto_quant @@ -454,9 +454,9 @@ mv kallisto/kallisto /usr/local/bin/ RUN echo "kallisto: $(kallisto version | sed 's/kallisto, version //')" > /var/software_versions.txt LABEL org.opencontainers.image.description="Companion container for running component kallisto kallisto_quant" -LABEL org.opencontainers.image.created="2025-09-17T07:30:35Z" +LABEL org.opencontainers.image.created="2025-09-17T08:35:57Z" LABEL org.opencontainers.image.source="https://github.com/pachterlab/kallisto" -LABEL org.opencontainers.image.revision="736f18e9887893ca830612b48744fe312fe3c696" +LABEL org.opencontainers.image.revision="666507c86de9150bfbdffdb2dbabc1dbde3c3262" LABEL org.opencontainers.image.version="v0.4.0" VIASHDOCKER diff --git a/target/executable/lofreq/lofreq_call/.config.vsh.yaml b/target/executable/lofreq/lofreq_call/.config.vsh.yaml index 6dbafbe2..c3ae8ea0 100644 --- a/target/executable/lofreq/lofreq_call/.config.vsh.yaml +++ b/target/executable/lofreq/lofreq_call/.config.vsh.yaml @@ -503,7 +503,7 @@ build_info: output: "target/executable/lofreq/lofreq_call" executable: "target/executable/lofreq/lofreq_call/lofreq_call" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -529,134 +529,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/executable/lofreq/lofreq_call/lofreq_call b/target/executable/lofreq/lofreq_call/lofreq_call index f2cd8921..191ae089 100755 --- a/target/executable/lofreq/lofreq_call/lofreq_call +++ b/target/executable/lofreq/lofreq_call/lofreq_call @@ -453,9 +453,9 @@ echo "lofreq: $version" > /var/software_versions.txt LABEL org.opencontainers.image.authors="Kai Waldrant" LABEL org.opencontainers.image.description="Companion container for running component lofreq lofreq_call" -LABEL org.opencontainers.image.created="2025-09-17T07:30:48Z" +LABEL org.opencontainers.image.created="2025-09-17T08:36:10Z" LABEL org.opencontainers.image.source="https://github.com/viash-hub/biobox" -LABEL org.opencontainers.image.revision="736f18e9887893ca830612b48744fe312fe3c696" +LABEL org.opencontainers.image.revision="666507c86de9150bfbdffdb2dbabc1dbde3c3262" LABEL org.opencontainers.image.version="v0.4.0" VIASHDOCKER diff --git a/target/executable/lofreq/lofreq_indelqual/.config.vsh.yaml b/target/executable/lofreq/lofreq_indelqual/.config.vsh.yaml index 91dfad6d..de0ebd9b 100644 --- a/target/executable/lofreq/lofreq_indelqual/.config.vsh.yaml +++ b/target/executable/lofreq/lofreq_indelqual/.config.vsh.yaml @@ -211,7 +211,7 @@ build_info: output: "target/executable/lofreq/lofreq_indelqual" executable: "target/executable/lofreq/lofreq_indelqual/lofreq_indelqual" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -237,134 +237,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/executable/lofreq/lofreq_indelqual/lofreq_indelqual b/target/executable/lofreq/lofreq_indelqual/lofreq_indelqual index 5d8d940a..1b959594 100755 --- a/target/executable/lofreq/lofreq_indelqual/lofreq_indelqual +++ b/target/executable/lofreq/lofreq_indelqual/lofreq_indelqual @@ -453,9 +453,9 @@ echo "lofreq: $version" > /var/software_versions.txt LABEL org.opencontainers.image.authors="Kai Waldrant" LABEL org.opencontainers.image.description="Companion container for running component lofreq lofreq_indelqual" -LABEL org.opencontainers.image.created="2025-09-17T07:30:48Z" +LABEL org.opencontainers.image.created="2025-09-17T08:36:10Z" LABEL org.opencontainers.image.source="https://github.com/viash-hub/biobox" -LABEL org.opencontainers.image.revision="736f18e9887893ca830612b48744fe312fe3c696" +LABEL org.opencontainers.image.revision="666507c86de9150bfbdffdb2dbabc1dbde3c3262" LABEL org.opencontainers.image.version="v0.4.0" VIASHDOCKER diff --git a/target/executable/multiqc/.config.vsh.yaml b/target/executable/multiqc/.config.vsh.yaml index 1c90825a..0dfe6efd 100644 --- a/target/executable/multiqc/.config.vsh.yaml +++ b/target/executable/multiqc/.config.vsh.yaml @@ -459,7 +459,7 @@ build_info: output: "target/executable/multiqc" executable: "target/executable/multiqc/multiqc" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -485,134 +485,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/executable/multiqc/multiqc b/target/executable/multiqc/multiqc index 93dc4440..8c18bb79 100755 --- a/target/executable/multiqc/multiqc +++ b/target/executable/multiqc/multiqc @@ -452,9 +452,9 @@ RUN multiqc --version | sed 's/multiqc, version\s\(.*\)/multiqc: "\1"/' > /var/s LABEL org.opencontainers.image.authors="Dorien Roosen" LABEL org.opencontainers.image.description="Companion container for running component multiqc" -LABEL org.opencontainers.image.created="2025-09-17T07:30:48Z" +LABEL org.opencontainers.image.created="2025-09-17T08:36:10Z" LABEL org.opencontainers.image.source="https://github.com/viash-hub/biobox" -LABEL org.opencontainers.image.revision="736f18e9887893ca830612b48744fe312fe3c696" +LABEL org.opencontainers.image.revision="666507c86de9150bfbdffdb2dbabc1dbde3c3262" LABEL org.opencontainers.image.version="v0.4.0" VIASHDOCKER diff --git a/target/executable/nanoplot/.config.vsh.yaml b/target/executable/nanoplot/.config.vsh.yaml index 93ae46ee..d48d4617 100644 --- a/target/executable/nanoplot/.config.vsh.yaml +++ b/target/executable/nanoplot/.config.vsh.yaml @@ -495,7 +495,7 @@ build_info: output: "target/executable/nanoplot" executable: "target/executable/nanoplot/nanoplot" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -521,134 +521,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/executable/nanoplot/nanoplot b/target/executable/nanoplot/nanoplot index 1d5455e7..e12b28bd 100755 --- a/target/executable/nanoplot/nanoplot +++ b/target/executable/nanoplot/nanoplot @@ -449,9 +449,9 @@ RUN version=$(NanoPlot --version) && \ echo "$version" > /var/software_versions.txt LABEL org.opencontainers.image.description="Companion container for running component nanoplot" -LABEL org.opencontainers.image.created="2025-09-17T07:30:38Z" +LABEL org.opencontainers.image.created="2025-09-17T08:36:01Z" LABEL org.opencontainers.image.source="https://github.com/wdecoster/NanoPlot" -LABEL org.opencontainers.image.revision="736f18e9887893ca830612b48744fe312fe3c696" +LABEL org.opencontainers.image.revision="666507c86de9150bfbdffdb2dbabc1dbde3c3262" LABEL org.opencontainers.image.version="v0.4.0" VIASHDOCKER diff --git a/target/executable/pear/.config.vsh.yaml b/target/executable/pear/.config.vsh.yaml index dde74f66..a20427f6 100644 --- a/target/executable/pear/.config.vsh.yaml +++ b/target/executable/pear/.config.vsh.yaml @@ -395,7 +395,7 @@ build_info: output: "target/executable/pear" executable: "target/executable/pear/pear" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -421,134 +421,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/executable/pear/pear b/target/executable/pear/pear index 820a2612..a91967ec 100755 --- a/target/executable/pear/pear +++ b/target/executable/pear/pear @@ -453,9 +453,9 @@ echo "pear: $version" > /var/software_versions.txt LABEL org.opencontainers.image.authors="Kai Waldrant" LABEL org.opencontainers.image.description="Companion container for running component pear" -LABEL org.opencontainers.image.created="2025-09-17T07:30:38Z" +LABEL org.opencontainers.image.created="2025-09-17T08:36:00Z" LABEL org.opencontainers.image.source="https://github.com/tseemann/PEAR" -LABEL org.opencontainers.image.revision="736f18e9887893ca830612b48744fe312fe3c696" +LABEL org.opencontainers.image.revision="666507c86de9150bfbdffdb2dbabc1dbde3c3262" LABEL org.opencontainers.image.version="v0.4.0" VIASHDOCKER diff --git a/target/executable/qualimap/qualimap_rnaseq/.config.vsh.yaml b/target/executable/qualimap/qualimap_rnaseq/.config.vsh.yaml index 5f92919f..d802c20a 100644 --- a/target/executable/qualimap/qualimap_rnaseq/.config.vsh.yaml +++ b/target/executable/qualimap/qualimap_rnaseq/.config.vsh.yaml @@ -267,7 +267,7 @@ build_info: output: "target/executable/qualimap/qualimap_rnaseq" executable: "target/executable/qualimap/qualimap_rnaseq/qualimap_rnaseq" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -293,134 +293,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/executable/qualimap/qualimap_rnaseq/qualimap_rnaseq b/target/executable/qualimap/qualimap_rnaseq/qualimap_rnaseq index 6777fa5b..0bfa33a0 100755 --- a/target/executable/qualimap/qualimap_rnaseq/qualimap_rnaseq +++ b/target/executable/qualimap/qualimap_rnaseq/qualimap_rnaseq @@ -452,9 +452,9 @@ RUN echo QualiMap: $(qualimap 2>&1 | grep QualiMap | sed 's/^.*QualiMap//') > /v LABEL org.opencontainers.image.authors="Dorien Roosen" LABEL org.opencontainers.image.description="Companion container for running component qualimap qualimap_rnaseq" -LABEL org.opencontainers.image.created="2025-09-17T07:30:36Z" +LABEL org.opencontainers.image.created="2025-09-17T08:35:58Z" LABEL org.opencontainers.image.source="https://bitbucket.org/kokonech/qualimap/commits/branch/master" -LABEL org.opencontainers.image.revision="736f18e9887893ca830612b48744fe312fe3c696" +LABEL org.opencontainers.image.revision="666507c86de9150bfbdffdb2dbabc1dbde3c3262" LABEL org.opencontainers.image.version="v0.4.0" VIASHDOCKER diff --git a/target/executable/rsem/rsem_calculate_expression/.config.vsh.yaml b/target/executable/rsem/rsem_calculate_expression/.config.vsh.yaml index 66c6bb1e..d28d1f4c 100644 --- a/target/executable/rsem/rsem_calculate_expression/.config.vsh.yaml +++ b/target/executable/rsem/rsem_calculate_expression/.config.vsh.yaml @@ -855,7 +855,7 @@ build_info: output: "target/executable/rsem/rsem_calculate_expression" executable: "target/executable/rsem/rsem_calculate_expression/rsem_calculate_expression" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -881,134 +881,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/executable/rsem/rsem_calculate_expression/rsem_calculate_expression b/target/executable/rsem/rsem_calculate_expression/rsem_calculate_expression index 6953161f..5327a653 100755 --- a/target/executable/rsem/rsem_calculate_expression/rsem_calculate_expression +++ b/target/executable/rsem/rsem_calculate_expression/rsem_calculate_expression @@ -470,9 +470,9 @@ echo "bowtie: `bowtie --version | grep -oP 'bowtie-align-s version \K\d+\.\d+\.\ echo "HISAT2: `hisat2 --version | grep -oP 'hisat2-align-s version \K\d+\.\d+\.\d+'`" >> /var/software_versions.txt LABEL org.opencontainers.image.description="Companion container for running component rsem rsem_calculate_expression" -LABEL org.opencontainers.image.created="2025-09-17T07:30:45Z" +LABEL org.opencontainers.image.created="2025-09-17T08:36:07Z" LABEL org.opencontainers.image.source="https://github.com/deweylab/RSEM" -LABEL org.opencontainers.image.revision="736f18e9887893ca830612b48744fe312fe3c696" +LABEL org.opencontainers.image.revision="666507c86de9150bfbdffdb2dbabc1dbde3c3262" LABEL org.opencontainers.image.version="v0.4.0" VIASHDOCKER diff --git a/target/executable/rsem/rsem_prepare_reference/.config.vsh.yaml b/target/executable/rsem/rsem_prepare_reference/.config.vsh.yaml index d231d854..eac77da6 100644 --- a/target/executable/rsem/rsem_prepare_reference/.config.vsh.yaml +++ b/target/executable/rsem/rsem_prepare_reference/.config.vsh.yaml @@ -415,7 +415,7 @@ build_info: output: "target/executable/rsem/rsem_prepare_reference" executable: "target/executable/rsem/rsem_prepare_reference/rsem_prepare_reference" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -441,134 +441,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/executable/rsem/rsem_prepare_reference/rsem_prepare_reference b/target/executable/rsem/rsem_prepare_reference/rsem_prepare_reference index 9c567f52..e11b3c88 100755 --- a/target/executable/rsem/rsem_prepare_reference/rsem_prepare_reference +++ b/target/executable/rsem/rsem_prepare_reference/rsem_prepare_reference @@ -494,9 +494,9 @@ echo "HISAT2: `hisat2 --version | grep -oP 'hisat2-align-s version \K\d+\.\d+\.\ LABEL org.opencontainers.image.authors="Sai Nirmayi Yasa" LABEL org.opencontainers.image.description="Companion container for running component rsem rsem_prepare_reference" -LABEL org.opencontainers.image.created="2025-09-17T07:30:45Z" +LABEL org.opencontainers.image.created="2025-09-17T08:36:07Z" LABEL org.opencontainers.image.source="https://github.com/deweylab/RSEM" -LABEL org.opencontainers.image.revision="736f18e9887893ca830612b48744fe312fe3c696" +LABEL org.opencontainers.image.revision="666507c86de9150bfbdffdb2dbabc1dbde3c3262" LABEL org.opencontainers.image.version="v0.4.0" VIASHDOCKER diff --git a/target/executable/rseqc/rseqc_bamstat/.config.vsh.yaml b/target/executable/rseqc/rseqc_bamstat/.config.vsh.yaml index 773d399a..73396852 100644 --- a/target/executable/rseqc/rseqc_bamstat/.config.vsh.yaml +++ b/target/executable/rseqc/rseqc_bamstat/.config.vsh.yaml @@ -173,7 +173,7 @@ build_info: output: "target/executable/rseqc/rseqc_bamstat" executable: "target/executable/rseqc/rseqc_bamstat/rseqc_bamstat" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -199,134 +199,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/executable/rseqc/rseqc_bamstat/rseqc_bamstat b/target/executable/rseqc/rseqc_bamstat/rseqc_bamstat index 37e72ec6..3c565913 100755 --- a/target/executable/rseqc/rseqc_bamstat/rseqc_bamstat +++ b/target/executable/rseqc/rseqc_bamstat/rseqc_bamstat @@ -455,9 +455,9 @@ RUN echo "RSeQC bam_stat.py: $(bam_stat.py --version | cut -d' ' -f2-)" > /var/s LABEL org.opencontainers.image.authors="Emma Rousseau" LABEL org.opencontainers.image.description="Companion container for running component rseqc rseqc_bamstat" -LABEL org.opencontainers.image.created="2025-09-17T07:30:43Z" +LABEL org.opencontainers.image.created="2025-09-17T08:36:05Z" LABEL org.opencontainers.image.source="https://github.com/MonashBioinformaticsPlatform/RSeQC" -LABEL org.opencontainers.image.revision="736f18e9887893ca830612b48744fe312fe3c696" +LABEL org.opencontainers.image.revision="666507c86de9150bfbdffdb2dbabc1dbde3c3262" LABEL org.opencontainers.image.version="v0.4.0" VIASHDOCKER diff --git a/target/executable/rseqc/rseqc_inferexperiment/.config.vsh.yaml b/target/executable/rseqc/rseqc_inferexperiment/.config.vsh.yaml index 3db34f1e..34dacd14 100644 --- a/target/executable/rseqc/rseqc_inferexperiment/.config.vsh.yaml +++ b/target/executable/rseqc/rseqc_inferexperiment/.config.vsh.yaml @@ -199,7 +199,7 @@ build_info: output: "target/executable/rseqc/rseqc_inferexperiment" executable: "target/executable/rseqc/rseqc_inferexperiment/rseqc_inferexperiment" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -225,134 +225,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/executable/rseqc/rseqc_inferexperiment/rseqc_inferexperiment b/target/executable/rseqc/rseqc_inferexperiment/rseqc_inferexperiment index 78637dbd..7f28f85f 100755 --- a/target/executable/rseqc/rseqc_inferexperiment/rseqc_inferexperiment +++ b/target/executable/rseqc/rseqc_inferexperiment/rseqc_inferexperiment @@ -455,9 +455,9 @@ RUN echo "RSeQC - infer_experiment.py: $(infer_experiment.py --version | cut -d' LABEL org.opencontainers.image.authors="Emma Rousseau" LABEL org.opencontainers.image.description="Companion container for running component rseqc rseqc_inferexperiment" -LABEL org.opencontainers.image.created="2025-09-17T07:30:43Z" +LABEL org.opencontainers.image.created="2025-09-17T08:36:05Z" LABEL org.opencontainers.image.source="https://github.com/MonashBioinformaticsPlatform/RSeQC" -LABEL org.opencontainers.image.revision="736f18e9887893ca830612b48744fe312fe3c696" +LABEL org.opencontainers.image.revision="666507c86de9150bfbdffdb2dbabc1dbde3c3262" LABEL org.opencontainers.image.version="v0.4.0" VIASHDOCKER diff --git a/target/executable/rseqc/rseqc_inner_distance/.config.vsh.yaml b/target/executable/rseqc/rseqc_inner_distance/.config.vsh.yaml index 90e9699a..8d8358c3 100644 --- a/target/executable/rseqc/rseqc_inner_distance/.config.vsh.yaml +++ b/target/executable/rseqc/rseqc_inner_distance/.config.vsh.yaml @@ -292,7 +292,7 @@ build_info: output: "target/executable/rseqc/rseqc_inner_distance" executable: "target/executable/rseqc/rseqc_inner_distance/rseqc_inner_distance" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -318,134 +318,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/executable/rseqc/rseqc_inner_distance/rseqc_inner_distance b/target/executable/rseqc/rseqc_inner_distance/rseqc_inner_distance index 75c3fcc3..8e5080e0 100755 --- a/target/executable/rseqc/rseqc_inner_distance/rseqc_inner_distance +++ b/target/executable/rseqc/rseqc_inner_distance/rseqc_inner_distance @@ -459,9 +459,9 @@ RUN echo "RSeQC - inner_distance.py: $(inner_distance.py --version | cut -d' ' - LABEL org.opencontainers.image.authors="Emma Rousseau" LABEL org.opencontainers.image.description="Companion container for running component rseqc rseqc_inner_distance" -LABEL org.opencontainers.image.created="2025-09-17T07:30:42Z" +LABEL org.opencontainers.image.created="2025-09-17T08:36:04Z" LABEL org.opencontainers.image.source="https://github.com/MonashBioinformaticsPlatform/RSeQC" -LABEL org.opencontainers.image.revision="736f18e9887893ca830612b48744fe312fe3c696" +LABEL org.opencontainers.image.revision="666507c86de9150bfbdffdb2dbabc1dbde3c3262" LABEL org.opencontainers.image.version="v0.4.0" VIASHDOCKER diff --git a/target/executable/salmon/salmon_index/.config.vsh.yaml b/target/executable/salmon/salmon_index/.config.vsh.yaml index 38cfc24c..0717b913 100644 --- a/target/executable/salmon/salmon_index/.config.vsh.yaml +++ b/target/executable/salmon/salmon_index/.config.vsh.yaml @@ -276,7 +276,7 @@ build_info: output: "target/executable/salmon/salmon_index" executable: "target/executable/salmon/salmon_index/salmon_index" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -302,134 +302,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/executable/salmon/salmon_index/salmon_index b/target/executable/salmon/salmon_index/salmon_index index 67679c15..990758bb 100755 --- a/target/executable/salmon/salmon_index/salmon_index +++ b/target/executable/salmon/salmon_index/salmon_index @@ -452,9 +452,9 @@ RUN salmon index -v 2>&1 | sed 's/salmon \([0-9.]*\)/salmon: \1/' > /var/softwar LABEL org.opencontainers.image.authors="Sai Nirmayi Yasa" LABEL org.opencontainers.image.description="Companion container for running component salmon salmon_index" -LABEL org.opencontainers.image.created="2025-09-17T07:30:43Z" +LABEL org.opencontainers.image.created="2025-09-17T08:36:05Z" LABEL org.opencontainers.image.source="https://github.com/COMBINE-lab/salmon" -LABEL org.opencontainers.image.revision="736f18e9887893ca830612b48744fe312fe3c696" +LABEL org.opencontainers.image.revision="666507c86de9150bfbdffdb2dbabc1dbde3c3262" LABEL org.opencontainers.image.version="v0.4.0" VIASHDOCKER diff --git a/target/executable/salmon/salmon_quant/.config.vsh.yaml b/target/executable/salmon/salmon_quant/.config.vsh.yaml index 79d157dc..af56a044 100644 --- a/target/executable/salmon/salmon_quant/.config.vsh.yaml +++ b/target/executable/salmon/salmon_quant/.config.vsh.yaml @@ -1172,7 +1172,7 @@ build_info: output: "target/executable/salmon/salmon_quant" executable: "target/executable/salmon/salmon_quant/salmon_quant" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -1198,134 +1198,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/executable/salmon/salmon_quant/salmon_quant b/target/executable/salmon/salmon_quant/salmon_quant index b6c93f40..f21715d7 100755 --- a/target/executable/salmon/salmon_quant/salmon_quant +++ b/target/executable/salmon/salmon_quant/salmon_quant @@ -452,9 +452,9 @@ RUN salmon index -v 2>&1 | sed 's/salmon \([0-9.]*\)/salmon: \1/' > /var/softwar LABEL org.opencontainers.image.authors="Sai Nirmayi Yasa" LABEL org.opencontainers.image.description="Companion container for running component salmon salmon_quant" -LABEL org.opencontainers.image.created="2025-09-17T07:30:44Z" +LABEL org.opencontainers.image.created="2025-09-17T08:36:06Z" LABEL org.opencontainers.image.source="https://github.com/COMBINE-lab/salmon" -LABEL org.opencontainers.image.revision="736f18e9887893ca830612b48744fe312fe3c696" +LABEL org.opencontainers.image.revision="666507c86de9150bfbdffdb2dbabc1dbde3c3262" LABEL org.opencontainers.image.version="v0.4.0" VIASHDOCKER diff --git a/target/executable/samtools/samtools_collate/.config.vsh.yaml b/target/executable/samtools/samtools_collate/.config.vsh.yaml index c1dd01bb..02d59082 100644 --- a/target/executable/samtools/samtools_collate/.config.vsh.yaml +++ b/target/executable/samtools/samtools_collate/.config.vsh.yaml @@ -262,7 +262,7 @@ build_info: output: "target/executable/samtools/samtools_collate" executable: "target/executable/samtools/samtools_collate/samtools_collate" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -288,134 +288,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/executable/samtools/samtools_collate/samtools_collate b/target/executable/samtools/samtools_collate/samtools_collate index 12c6a47e..16161c66 100755 --- a/target/executable/samtools/samtools_collate/samtools_collate +++ b/target/executable/samtools/samtools_collate/samtools_collate @@ -453,9 +453,9 @@ sed 's#Using ##;s# \([0-9\.]*\)$#: \1#' > /var/software_versions.txt LABEL org.opencontainers.image.authors="Emma Rousseau" LABEL org.opencontainers.image.description="Companion container for running component samtools samtools_collate" -LABEL org.opencontainers.image.created="2025-09-17T07:30:46Z" +LABEL org.opencontainers.image.created="2025-09-17T08:36:08Z" LABEL org.opencontainers.image.source="https://github.com/samtools/samtools" -LABEL org.opencontainers.image.revision="736f18e9887893ca830612b48744fe312fe3c696" +LABEL org.opencontainers.image.revision="666507c86de9150bfbdffdb2dbabc1dbde3c3262" LABEL org.opencontainers.image.version="v0.4.0" VIASHDOCKER diff --git a/target/executable/samtools/samtools_faidx/.config.vsh.yaml b/target/executable/samtools/samtools_faidx/.config.vsh.yaml index ddc0c183..d5802086 100644 --- a/target/executable/samtools/samtools_faidx/.config.vsh.yaml +++ b/target/executable/samtools/samtools_faidx/.config.vsh.yaml @@ -241,7 +241,7 @@ build_info: output: "target/executable/samtools/samtools_faidx" executable: "target/executable/samtools/samtools_faidx/samtools_faidx" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -267,134 +267,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/executable/samtools/samtools_faidx/samtools_faidx b/target/executable/samtools/samtools_faidx/samtools_faidx index 286c9ced..0fdde4ea 100755 --- a/target/executable/samtools/samtools_faidx/samtools_faidx +++ b/target/executable/samtools/samtools_faidx/samtools_faidx @@ -453,9 +453,9 @@ sed 's#Using ##;s# \([0-9\.]*\)$#: \1#' > /var/software_versions.txt LABEL org.opencontainers.image.authors="Emma Rousseau" LABEL org.opencontainers.image.description="Companion container for running component samtools samtools_faidx" -LABEL org.opencontainers.image.created="2025-09-17T07:30:47Z" +LABEL org.opencontainers.image.created="2025-09-17T08:36:09Z" LABEL org.opencontainers.image.source="https://github.com/samtools/samtools" -LABEL org.opencontainers.image.revision="736f18e9887893ca830612b48744fe312fe3c696" +LABEL org.opencontainers.image.revision="666507c86de9150bfbdffdb2dbabc1dbde3c3262" LABEL org.opencontainers.image.version="v0.4.0" VIASHDOCKER diff --git a/target/executable/samtools/samtools_fasta/.config.vsh.yaml b/target/executable/samtools/samtools_fasta/.config.vsh.yaml index f6eb54cc..29361db0 100644 --- a/target/executable/samtools/samtools_fasta/.config.vsh.yaml +++ b/target/executable/samtools/samtools_fasta/.config.vsh.yaml @@ -431,7 +431,7 @@ build_info: output: "target/executable/samtools/samtools_fasta" executable: "target/executable/samtools/samtools_fasta/samtools_fasta" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -457,134 +457,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/executable/samtools/samtools_fasta/samtools_fasta b/target/executable/samtools/samtools_fasta/samtools_fasta index cd8128b3..a1a584ae 100755 --- a/target/executable/samtools/samtools_fasta/samtools_fasta +++ b/target/executable/samtools/samtools_fasta/samtools_fasta @@ -453,9 +453,9 @@ sed 's#Using ##;s# \([0-9\.]*\)$#: \1#' > /var/software_versions.txt LABEL org.opencontainers.image.authors="Emma Rousseau" LABEL org.opencontainers.image.description="Companion container for running component samtools samtools_fasta" -LABEL org.opencontainers.image.created="2025-09-17T07:30:45Z" +LABEL org.opencontainers.image.created="2025-09-17T08:36:07Z" LABEL org.opencontainers.image.source="https://github.com/samtools/samtools" -LABEL org.opencontainers.image.revision="736f18e9887893ca830612b48744fe312fe3c696" +LABEL org.opencontainers.image.revision="666507c86de9150bfbdffdb2dbabc1dbde3c3262" LABEL org.opencontainers.image.version="v0.4.0" VIASHDOCKER diff --git a/target/executable/samtools/samtools_fastq/.config.vsh.yaml b/target/executable/samtools/samtools_fastq/.config.vsh.yaml index baf8dbf6..9e4db944 100644 --- a/target/executable/samtools/samtools_fastq/.config.vsh.yaml +++ b/target/executable/samtools/samtools_fastq/.config.vsh.yaml @@ -431,7 +431,7 @@ build_info: output: "target/executable/samtools/samtools_fastq" executable: "target/executable/samtools/samtools_fastq/samtools_fastq" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -457,134 +457,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/executable/samtools/samtools_fastq/samtools_fastq b/target/executable/samtools/samtools_fastq/samtools_fastq index 92389067..8f6272fb 100755 --- a/target/executable/samtools/samtools_fastq/samtools_fastq +++ b/target/executable/samtools/samtools_fastq/samtools_fastq @@ -453,9 +453,9 @@ sed 's#Using ##;s# \([0-9\.]*\)$#: \1#' > /var/software_versions.txt LABEL org.opencontainers.image.authors="Emma Rousseau" LABEL org.opencontainers.image.description="Companion container for running component samtools samtools_fastq" -LABEL org.opencontainers.image.created="2025-09-17T07:30:48Z" +LABEL org.opencontainers.image.created="2025-09-17T08:36:10Z" LABEL org.opencontainers.image.source="https://github.com/samtools/samtools" -LABEL org.opencontainers.image.revision="736f18e9887893ca830612b48744fe312fe3c696" +LABEL org.opencontainers.image.revision="666507c86de9150bfbdffdb2dbabc1dbde3c3262" LABEL org.opencontainers.image.version="v0.4.0" VIASHDOCKER diff --git a/target/executable/samtools/samtools_flagstat/.config.vsh.yaml b/target/executable/samtools/samtools_flagstat/.config.vsh.yaml index 0f1d5385..0511c9ea 100644 --- a/target/executable/samtools/samtools_flagstat/.config.vsh.yaml +++ b/target/executable/samtools/samtools_flagstat/.config.vsh.yaml @@ -171,7 +171,7 @@ build_info: output: "target/executable/samtools/samtools_flagstat" executable: "target/executable/samtools/samtools_flagstat/samtools_flagstat" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -197,134 +197,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/executable/samtools/samtools_flagstat/samtools_flagstat b/target/executable/samtools/samtools_flagstat/samtools_flagstat index c0347e61..8ddb43cc 100755 --- a/target/executable/samtools/samtools_flagstat/samtools_flagstat +++ b/target/executable/samtools/samtools_flagstat/samtools_flagstat @@ -453,9 +453,9 @@ sed 's#Using ##;s# \([0-9\.]*\)$#: \1#' > /var/software_versions.txt LABEL org.opencontainers.image.authors="Emma Rousseau" LABEL org.opencontainers.image.description="Companion container for running component samtools samtools_flagstat" -LABEL org.opencontainers.image.created="2025-09-17T07:30:47Z" +LABEL org.opencontainers.image.created="2025-09-17T08:36:09Z" LABEL org.opencontainers.image.source="https://github.com/samtools/samtools" -LABEL org.opencontainers.image.revision="736f18e9887893ca830612b48744fe312fe3c696" +LABEL org.opencontainers.image.revision="666507c86de9150bfbdffdb2dbabc1dbde3c3262" LABEL org.opencontainers.image.version="v0.4.0" VIASHDOCKER diff --git a/target/executable/samtools/samtools_idxstats/.config.vsh.yaml b/target/executable/samtools/samtools_idxstats/.config.vsh.yaml index 25b651ff..c6eca82a 100644 --- a/target/executable/samtools/samtools_idxstats/.config.vsh.yaml +++ b/target/executable/samtools/samtools_idxstats/.config.vsh.yaml @@ -181,7 +181,7 @@ build_info: output: "target/executable/samtools/samtools_idxstats" executable: "target/executable/samtools/samtools_idxstats/samtools_idxstats" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -207,134 +207,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/executable/samtools/samtools_idxstats/samtools_idxstats b/target/executable/samtools/samtools_idxstats/samtools_idxstats index fd978540..ea1ee168 100755 --- a/target/executable/samtools/samtools_idxstats/samtools_idxstats +++ b/target/executable/samtools/samtools_idxstats/samtools_idxstats @@ -453,9 +453,9 @@ sed 's#Using ##;s# \([0-9\.]*\)$#: \1#' > /var/software_versions.txt LABEL org.opencontainers.image.authors="Emma Rousseau" LABEL org.opencontainers.image.description="Companion container for running component samtools samtools_idxstats" -LABEL org.opencontainers.image.created="2025-09-17T07:30:47Z" +LABEL org.opencontainers.image.created="2025-09-17T08:36:09Z" LABEL org.opencontainers.image.source="https://github.com/samtools/samtools" -LABEL org.opencontainers.image.revision="736f18e9887893ca830612b48744fe312fe3c696" +LABEL org.opencontainers.image.revision="666507c86de9150bfbdffdb2dbabc1dbde3c3262" LABEL org.opencontainers.image.version="v0.4.0" VIASHDOCKER diff --git a/target/executable/samtools/samtools_index/.config.vsh.yaml b/target/executable/samtools/samtools_index/.config.vsh.yaml index 3f2cb15f..6fe8df36 100644 --- a/target/executable/samtools/samtools_index/.config.vsh.yaml +++ b/target/executable/samtools/samtools_index/.config.vsh.yaml @@ -187,7 +187,7 @@ build_info: output: "target/executable/samtools/samtools_index" executable: "target/executable/samtools/samtools_index/samtools_index" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -213,134 +213,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/executable/samtools/samtools_index/samtools_index b/target/executable/samtools/samtools_index/samtools_index index 09eae5dd..1e14c365 100755 --- a/target/executable/samtools/samtools_index/samtools_index +++ b/target/executable/samtools/samtools_index/samtools_index @@ -453,9 +453,9 @@ sed 's#Using ##;s# \([0-9\.]*\)$#: \1#' > /var/software_versions.txt LABEL org.opencontainers.image.authors="Emma Rousseau" LABEL org.opencontainers.image.description="Companion container for running component samtools samtools_index" -LABEL org.opencontainers.image.created="2025-09-17T07:30:46Z" +LABEL org.opencontainers.image.created="2025-09-17T08:36:08Z" LABEL org.opencontainers.image.source="https://github.com/samtools/samtools" -LABEL org.opencontainers.image.revision="736f18e9887893ca830612b48744fe312fe3c696" +LABEL org.opencontainers.image.revision="666507c86de9150bfbdffdb2dbabc1dbde3c3262" LABEL org.opencontainers.image.version="v0.4.0" VIASHDOCKER diff --git a/target/executable/samtools/samtools_sort/.config.vsh.yaml b/target/executable/samtools/samtools_sort/.config.vsh.yaml index 651dcd7a..66187fa3 100644 --- a/target/executable/samtools/samtools_sort/.config.vsh.yaml +++ b/target/executable/samtools/samtools_sort/.config.vsh.yaml @@ -330,7 +330,7 @@ build_info: output: "target/executable/samtools/samtools_sort" executable: "target/executable/samtools/samtools_sort/samtools_sort" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -356,134 +356,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/executable/samtools/samtools_sort/samtools_sort b/target/executable/samtools/samtools_sort/samtools_sort index 52a1d166..c10e99b2 100755 --- a/target/executable/samtools/samtools_sort/samtools_sort +++ b/target/executable/samtools/samtools_sort/samtools_sort @@ -453,9 +453,9 @@ sed 's#Using ##;s# \([0-9\.]*\)$#: \1#' > /var/software_versions.txt LABEL org.opencontainers.image.authors="Emma Rousseau" LABEL org.opencontainers.image.description="Companion container for running component samtools samtools_sort" -LABEL org.opencontainers.image.created="2025-09-17T07:30:46Z" +LABEL org.opencontainers.image.created="2025-09-17T08:36:08Z" LABEL org.opencontainers.image.source="https://github.com/samtools/samtools" -LABEL org.opencontainers.image.revision="736f18e9887893ca830612b48744fe312fe3c696" +LABEL org.opencontainers.image.revision="666507c86de9150bfbdffdb2dbabc1dbde3c3262" LABEL org.opencontainers.image.version="v0.4.0" VIASHDOCKER diff --git a/target/executable/samtools/samtools_stats/.config.vsh.yaml b/target/executable/samtools/samtools_stats/.config.vsh.yaml index f33d88c4..939290e8 100644 --- a/target/executable/samtools/samtools_stats/.config.vsh.yaml +++ b/target/executable/samtools/samtools_stats/.config.vsh.yaml @@ -399,7 +399,7 @@ build_info: output: "target/executable/samtools/samtools_stats" executable: "target/executable/samtools/samtools_stats/samtools_stats" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -425,134 +425,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/executable/samtools/samtools_stats/samtools_stats b/target/executable/samtools/samtools_stats/samtools_stats index 40237bf1..1c2c4869 100755 --- a/target/executable/samtools/samtools_stats/samtools_stats +++ b/target/executable/samtools/samtools_stats/samtools_stats @@ -453,9 +453,9 @@ sed 's#Using ##;s# \([0-9\.]*\)$#: \1#' > /var/software_versions.txt LABEL org.opencontainers.image.authors="Emma Rousseau" LABEL org.opencontainers.image.description="Companion container for running component samtools samtools_stats" -LABEL org.opencontainers.image.created="2025-09-17T07:30:46Z" +LABEL org.opencontainers.image.created="2025-09-17T08:36:08Z" LABEL org.opencontainers.image.source="https://github.com/samtools/samtools" -LABEL org.opencontainers.image.revision="736f18e9887893ca830612b48744fe312fe3c696" +LABEL org.opencontainers.image.revision="666507c86de9150bfbdffdb2dbabc1dbde3c3262" LABEL org.opencontainers.image.version="v0.4.0" VIASHDOCKER diff --git a/target/executable/samtools/samtools_view/.config.vsh.yaml b/target/executable/samtools/samtools_view/.config.vsh.yaml index 036fe26d..e5f8c6cb 100644 --- a/target/executable/samtools/samtools_view/.config.vsh.yaml +++ b/target/executable/samtools/samtools_view/.config.vsh.yaml @@ -663,7 +663,7 @@ build_info: output: "target/executable/samtools/samtools_view" executable: "target/executable/samtools/samtools_view/samtools_view" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -689,134 +689,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/executable/samtools/samtools_view/samtools_view b/target/executable/samtools/samtools_view/samtools_view index 394a55a8..d6c287de 100755 --- a/target/executable/samtools/samtools_view/samtools_view +++ b/target/executable/samtools/samtools_view/samtools_view @@ -453,9 +453,9 @@ sed 's#Using ##;s# \([0-9\.]*\)$#: \1#' > /var/software_versions.txt LABEL org.opencontainers.image.authors="Emma Rousseau" LABEL org.opencontainers.image.description="Companion container for running component samtools samtools_view" -LABEL org.opencontainers.image.created="2025-09-17T07:30:47Z" +LABEL org.opencontainers.image.created="2025-09-17T08:36:10Z" LABEL org.opencontainers.image.source="https://github.com/samtools/samtools" -LABEL org.opencontainers.image.revision="736f18e9887893ca830612b48744fe312fe3c696" +LABEL org.opencontainers.image.revision="666507c86de9150bfbdffdb2dbabc1dbde3c3262" LABEL org.opencontainers.image.version="v0.4.0" VIASHDOCKER diff --git a/target/executable/seqtk/seqtk_sample/.config.vsh.yaml b/target/executable/seqtk/seqtk_sample/.config.vsh.yaml index 4f332873..5bdbb90e 100644 --- a/target/executable/seqtk/seqtk_sample/.config.vsh.yaml +++ b/target/executable/seqtk/seqtk_sample/.config.vsh.yaml @@ -176,7 +176,7 @@ build_info: output: "target/executable/seqtk/seqtk_sample" executable: "target/executable/seqtk/seqtk_sample/seqtk_sample" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -202,134 +202,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/executable/seqtk/seqtk_sample/seqtk_sample b/target/executable/seqtk/seqtk_sample/seqtk_sample index 9ad8ce5f..b1a41456 100755 --- a/target/executable/seqtk/seqtk_sample/seqtk_sample +++ b/target/executable/seqtk/seqtk_sample/seqtk_sample @@ -450,9 +450,9 @@ FROM quay.io/biocontainers/seqtk:1.4--he4a0461_2 ENTRYPOINT [] LABEL org.opencontainers.image.authors="Jakub Majercik" LABEL org.opencontainers.image.description="Companion container for running component seqtk seqtk_sample" -LABEL org.opencontainers.image.created="2025-09-17T07:30:44Z" +LABEL org.opencontainers.image.created="2025-09-17T08:36:06Z" LABEL org.opencontainers.image.source="https://github.com/lh3/seqtk/tree/v1.4" -LABEL org.opencontainers.image.revision="736f18e9887893ca830612b48744fe312fe3c696" +LABEL org.opencontainers.image.revision="666507c86de9150bfbdffdb2dbabc1dbde3c3262" LABEL org.opencontainers.image.version="v0.4.0" VIASHDOCKER diff --git a/target/executable/seqtk/seqtk_subseq/.config.vsh.yaml b/target/executable/seqtk/seqtk_subseq/.config.vsh.yaml index b51fae39..9532abce 100644 --- a/target/executable/seqtk/seqtk_subseq/.config.vsh.yaml +++ b/target/executable/seqtk/seqtk_subseq/.config.vsh.yaml @@ -195,7 +195,7 @@ build_info: output: "target/executable/seqtk/seqtk_subseq" executable: "target/executable/seqtk/seqtk_subseq/seqtk_subseq" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -221,134 +221,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/executable/seqtk/seqtk_subseq/seqtk_subseq b/target/executable/seqtk/seqtk_subseq/seqtk_subseq index 0f984eb6..ce49c8a0 100755 --- a/target/executable/seqtk/seqtk_subseq/seqtk_subseq +++ b/target/executable/seqtk/seqtk_subseq/seqtk_subseq @@ -452,9 +452,9 @@ RUN echo $(echo $(seqtk 2>&1) | sed -n 's/.*\(Version: [^ ]*\).*/\1/p') > /var/s LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo" LABEL org.opencontainers.image.description="Companion container for running component seqtk seqtk_subseq" -LABEL org.opencontainers.image.created="2025-09-17T07:30:44Z" +LABEL org.opencontainers.image.created="2025-09-17T08:36:06Z" LABEL org.opencontainers.image.source="https://github.com/lh3/seqtk/tree/v1.4" -LABEL org.opencontainers.image.revision="736f18e9887893ca830612b48744fe312fe3c696" +LABEL org.opencontainers.image.revision="666507c86de9150bfbdffdb2dbabc1dbde3c3262" LABEL org.opencontainers.image.version="v0.4.0" VIASHDOCKER diff --git a/target/executable/sgdemux/.config.vsh.yaml b/target/executable/sgdemux/.config.vsh.yaml index 61096c4e..4f3fee6f 100644 --- a/target/executable/sgdemux/.config.vsh.yaml +++ b/target/executable/sgdemux/.config.vsh.yaml @@ -433,7 +433,7 @@ build_info: output: "target/executable/sgdemux" executable: "target/executable/sgdemux/sgdemux" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -459,134 +459,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/executable/sgdemux/sgdemux b/target/executable/sgdemux/sgdemux index 6e9015e0..9bc1f25d 100755 --- a/target/executable/sgdemux/sgdemux +++ b/target/executable/sgdemux/sgdemux @@ -457,9 +457,9 @@ echo "sgdemux: $(sgdemux --version | cut -d' ' -f2)" > /var/software_versions.tx LABEL org.opencontainers.image.authors="Dries Schaumont" LABEL org.opencontainers.image.description="Companion container for running component sgdemux" -LABEL org.opencontainers.image.created="2025-09-17T07:30:36Z" +LABEL org.opencontainers.image.created="2025-09-17T08:35:59Z" LABEL org.opencontainers.image.source="https://github.com/Singular-Genomics/singular-demux" -LABEL org.opencontainers.image.revision="736f18e9887893ca830612b48744fe312fe3c696" +LABEL org.opencontainers.image.revision="666507c86de9150bfbdffdb2dbabc1dbde3c3262" LABEL org.opencontainers.image.version="v0.4.0" VIASHDOCKER diff --git a/target/executable/snpeff/snpeff_ann/.config.vsh.yaml b/target/executable/snpeff/snpeff_ann/.config.vsh.yaml index 000b0d71..4eeba288 100644 --- a/target/executable/snpeff/snpeff_ann/.config.vsh.yaml +++ b/target/executable/snpeff/snpeff_ann/.config.vsh.yaml @@ -644,7 +644,7 @@ build_info: output: "target/executable/snpeff/snpeff_ann" executable: "target/executable/snpeff/snpeff_ann/snpeff_ann" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -670,134 +670,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/executable/snpeff/snpeff_ann/snpeff_ann b/target/executable/snpeff/snpeff_ann/snpeff_ann index 113611ce..3b4ee029 100755 --- a/target/executable/snpeff/snpeff_ann/snpeff_ann +++ b/target/executable/snpeff/snpeff_ann/snpeff_ann @@ -457,9 +457,9 @@ version_trimmed=$(echo "$version" | awk '{print $1, $2}') && \ echo "$version_trimmed" > /var/software_versions.txt LABEL org.opencontainers.image.description="Companion container for running component snpeff snpeff_ann" -LABEL org.opencontainers.image.created="2025-09-17T07:30:35Z" +LABEL org.opencontainers.image.created="2025-09-17T08:35:57Z" LABEL org.opencontainers.image.source="https://github.com/pcingola/SnpEff" -LABEL org.opencontainers.image.revision="736f18e9887893ca830612b48744fe312fe3c696" +LABEL org.opencontainers.image.revision="666507c86de9150bfbdffdb2dbabc1dbde3c3262" LABEL org.opencontainers.image.version="v0.4.0" VIASHDOCKER diff --git a/target/executable/sortmerna/.config.vsh.yaml b/target/executable/sortmerna/.config.vsh.yaml index 625009ea..32bd69cf 100644 --- a/target/executable/sortmerna/.config.vsh.yaml +++ b/target/executable/sortmerna/.config.vsh.yaml @@ -597,7 +597,7 @@ build_info: output: "target/executable/sortmerna" executable: "target/executable/sortmerna/sortmerna" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -623,134 +623,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/executable/sortmerna/sortmerna b/target/executable/sortmerna/sortmerna index d7c11fca..4aed217a 100755 --- a/target/executable/sortmerna/sortmerna +++ b/target/executable/sortmerna/sortmerna @@ -448,9 +448,9 @@ ENTRYPOINT [] RUN echo SortMeRNA: `sortmerna --version | sed -n 's/.*version \([0-9]\+\.[0-9]\+\.[0-9]\+\).*/\1/p'` LABEL org.opencontainers.image.description="Companion container for running component sortmerna" -LABEL org.opencontainers.image.created="2025-09-17T07:30:36Z" +LABEL org.opencontainers.image.created="2025-09-17T08:35:58Z" LABEL org.opencontainers.image.source="https://github.com/sortmerna/sortmerna" -LABEL org.opencontainers.image.revision="736f18e9887893ca830612b48744fe312fe3c696" +LABEL org.opencontainers.image.revision="666507c86de9150bfbdffdb2dbabc1dbde3c3262" LABEL org.opencontainers.image.version="v0.4.0" VIASHDOCKER diff --git a/target/executable/star/star_align_reads/.config.vsh.yaml b/target/executable/star/star_align_reads/.config.vsh.yaml index 3d1e6075..db5f0876 100644 --- a/target/executable/star/star_align_reads/.config.vsh.yaml +++ b/target/executable/star/star_align_reads/.config.vsh.yaml @@ -2671,7 +2671,7 @@ build_info: output: "target/executable/star/star_align_reads" executable: "target/executable/star/star_align_reads/star_align_reads" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -2697,134 +2697,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/executable/star/star_align_reads/star_align_reads b/target/executable/star/star_align_reads/star_align_reads index a3f70a30..d66ea5ed 100755 --- a/target/executable/star/star_align_reads/star_align_reads +++ b/target/executable/star/star_align_reads/star_align_reads @@ -475,9 +475,9 @@ RUN STAR --version | sed 's#\(.*\)#star: "\1"#' > /var/software_versions.txt LABEL org.opencontainers.image.authors="Angela Oliveira Pisco, Robrecht Cannoodt" LABEL org.opencontainers.image.description="Companion container for running component star star_align_reads" -LABEL org.opencontainers.image.created="2025-09-17T07:30:33Z" +LABEL org.opencontainers.image.created="2025-09-17T08:35:55Z" LABEL org.opencontainers.image.source="https://github.com/alexdobin/STAR" -LABEL org.opencontainers.image.revision="736f18e9887893ca830612b48744fe312fe3c696" +LABEL org.opencontainers.image.revision="666507c86de9150bfbdffdb2dbabc1dbde3c3262" LABEL org.opencontainers.image.version="v0.4.0" VIASHDOCKER diff --git a/target/executable/star/star_genome_generate/.config.vsh.yaml b/target/executable/star/star_genome_generate/.config.vsh.yaml index 27b6aa44..cd43182a 100644 --- a/target/executable/star/star_genome_generate/.config.vsh.yaml +++ b/target/executable/star/star_genome_generate/.config.vsh.yaml @@ -332,7 +332,7 @@ build_info: output: "target/executable/star/star_genome_generate" executable: "target/executable/star/star_genome_generate/star_genome_generate" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -358,134 +358,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/executable/star/star_genome_generate/star_genome_generate b/target/executable/star/star_genome_generate/star_genome_generate index b201bb9e..d637176c 100755 --- a/target/executable/star/star_genome_generate/star_genome_generate +++ b/target/executable/star/star_genome_generate/star_genome_generate @@ -467,9 +467,9 @@ RUN STAR --version | sed 's#\(.*\)#star: "\1"#' > /var/software_versions.txt LABEL org.opencontainers.image.authors="Sai Nirmayi Yasa" LABEL org.opencontainers.image.description="Companion container for running component star star_genome_generate" -LABEL org.opencontainers.image.created="2025-09-17T07:30:33Z" +LABEL org.opencontainers.image.created="2025-09-17T08:35:55Z" LABEL org.opencontainers.image.source="https://github.com/alexdobin/STAR" -LABEL org.opencontainers.image.revision="736f18e9887893ca830612b48744fe312fe3c696" +LABEL org.opencontainers.image.revision="666507c86de9150bfbdffdb2dbabc1dbde3c3262" LABEL org.opencontainers.image.version="v0.4.0" VIASHDOCKER diff --git a/target/executable/trimgalore/.config.vsh.yaml b/target/executable/trimgalore/.config.vsh.yaml index af280347..5ce4d3a7 100644 --- a/target/executable/trimgalore/.config.vsh.yaml +++ b/target/executable/trimgalore/.config.vsh.yaml @@ -769,7 +769,7 @@ build_info: output: "target/executable/trimgalore" executable: "target/executable/trimgalore/trimgalore" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -795,134 +795,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/executable/trimgalore/trimgalore b/target/executable/trimgalore/trimgalore index 4e7fee7a..ce7a5735 100755 --- a/target/executable/trimgalore/trimgalore +++ b/target/executable/trimgalore/trimgalore @@ -452,9 +452,9 @@ RUN echo "TrimGalore: `trim_galore --version | sed -n 's/.*version\s\+\([0-9]\+\ LABEL org.opencontainers.image.authors="Sai Nirmayi Yasa" LABEL org.opencontainers.image.description="Companion container for running component trimgalore" -LABEL org.opencontainers.image.created="2025-09-17T07:30:45Z" +LABEL org.opencontainers.image.created="2025-09-17T08:36:07Z" LABEL org.opencontainers.image.source="https://github.com/FelixKrueger/TrimGalore" -LABEL org.opencontainers.image.revision="736f18e9887893ca830612b48744fe312fe3c696" +LABEL org.opencontainers.image.revision="666507c86de9150bfbdffdb2dbabc1dbde3c3262" LABEL org.opencontainers.image.version="v0.4.0" VIASHDOCKER diff --git a/target/executable/umi_tools/umi_tools_dedup/.config.vsh.yaml b/target/executable/umi_tools/umi_tools_dedup/.config.vsh.yaml index 92a3442c..cfebfcbf 100644 --- a/target/executable/umi_tools/umi_tools_dedup/.config.vsh.yaml +++ b/target/executable/umi_tools/umi_tools_dedup/.config.vsh.yaml @@ -609,7 +609,7 @@ build_info: output: "target/executable/umi_tools/umi_tools_dedup" executable: "target/executable/umi_tools/umi_tools_dedup/umi_tools_dedup" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -635,134 +635,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/executable/umi_tools/umi_tools_dedup/umi_tools_dedup b/target/executable/umi_tools/umi_tools_dedup/umi_tools_dedup index 4fa85914..305bc1a9 100755 --- a/target/executable/umi_tools/umi_tools_dedup/umi_tools_dedup +++ b/target/executable/umi_tools/umi_tools_dedup/umi_tools_dedup @@ -452,9 +452,9 @@ RUN umi_tools -v | sed 's/ version//g' > /var/software_versions.txt LABEL org.opencontainers.image.authors="Emma Rousseau" LABEL org.opencontainers.image.description="Companion container for running component umi_tools umi_tools_dedup" -LABEL org.opencontainers.image.created="2025-09-17T07:30:42Z" +LABEL org.opencontainers.image.created="2025-09-17T08:36:04Z" LABEL org.opencontainers.image.source="https://github.com/CGATOxford/UMI-tools" -LABEL org.opencontainers.image.revision="736f18e9887893ca830612b48744fe312fe3c696" +LABEL org.opencontainers.image.revision="666507c86de9150bfbdffdb2dbabc1dbde3c3262" LABEL org.opencontainers.image.version="v0.4.0" VIASHDOCKER diff --git a/target/executable/umi_tools/umi_tools_extract/.config.vsh.yaml b/target/executable/umi_tools/umi_tools_extract/.config.vsh.yaml index 8a1c44b0..1993f49c 100644 --- a/target/executable/umi_tools/umi_tools_extract/.config.vsh.yaml +++ b/target/executable/umi_tools/umi_tools_extract/.config.vsh.yaml @@ -437,7 +437,7 @@ build_info: output: "target/executable/umi_tools/umi_tools_extract" executable: "target/executable/umi_tools/umi_tools_extract/umi_tools_extract" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -463,134 +463,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/executable/umi_tools/umi_tools_extract/umi_tools_extract b/target/executable/umi_tools/umi_tools_extract/umi_tools_extract index 6535323b..7b943b93 100755 --- a/target/executable/umi_tools/umi_tools_extract/umi_tools_extract +++ b/target/executable/umi_tools/umi_tools_extract/umi_tools_extract @@ -448,9 +448,9 @@ ENTRYPOINT [] RUN umi_tools -v | sed 's/ version//g' > /var/software_versions.txt LABEL org.opencontainers.image.description="Companion container for running component umi_tools umi_tools_extract" -LABEL org.opencontainers.image.created="2025-09-17T07:30:42Z" +LABEL org.opencontainers.image.created="2025-09-17T08:36:04Z" LABEL org.opencontainers.image.source="https://github.com/CGATOxford/UMI-tools" -LABEL org.opencontainers.image.revision="736f18e9887893ca830612b48744fe312fe3c696" +LABEL org.opencontainers.image.revision="666507c86de9150bfbdffdb2dbabc1dbde3c3262" LABEL org.opencontainers.image.version="v0.4.0" VIASHDOCKER diff --git a/target/executable/umi_tools/umi_tools_prepareforrsem/.config.vsh.yaml b/target/executable/umi_tools/umi_tools_prepareforrsem/.config.vsh.yaml index 59c275e8..566b277b 100644 --- a/target/executable/umi_tools/umi_tools_prepareforrsem/.config.vsh.yaml +++ b/target/executable/umi_tools/umi_tools_prepareforrsem/.config.vsh.yaml @@ -259,7 +259,7 @@ build_info: output: "target/executable/umi_tools/umi_tools_prepareforrsem" executable: "target/executable/umi_tools/umi_tools_prepareforrsem/umi_tools_prepareforrsem" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -285,134 +285,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/executable/umi_tools/umi_tools_prepareforrsem/umi_tools_prepareforrsem b/target/executable/umi_tools/umi_tools_prepareforrsem/umi_tools_prepareforrsem index 54f7fed6..02453d8a 100755 --- a/target/executable/umi_tools/umi_tools_prepareforrsem/umi_tools_prepareforrsem +++ b/target/executable/umi_tools/umi_tools_prepareforrsem/umi_tools_prepareforrsem @@ -448,9 +448,9 @@ ENTRYPOINT [] RUN umi_tools -v | sed 's/ version//g' > /var/software_versions.txt LABEL org.opencontainers.image.description="Companion container for running component umi_tools umi_tools_prepareforrsem" -LABEL org.opencontainers.image.created="2025-09-17T07:30:42Z" +LABEL org.opencontainers.image.created="2025-09-17T08:36:04Z" LABEL org.opencontainers.image.source="https://github.com/CGATOxford/UMI-tools" -LABEL org.opencontainers.image.revision="736f18e9887893ca830612b48744fe312fe3c696" +LABEL org.opencontainers.image.revision="666507c86de9150bfbdffdb2dbabc1dbde3c3262" LABEL org.opencontainers.image.version="v0.4.0" VIASHDOCKER diff --git a/target/nextflow/agat/agat_convert_bed2gff/.config.vsh.yaml b/target/nextflow/agat/agat_convert_bed2gff/.config.vsh.yaml index a02c4961..3a7bbf55 100644 --- a/target/nextflow/agat/agat_convert_bed2gff/.config.vsh.yaml +++ b/target/nextflow/agat/agat_convert_bed2gff/.config.vsh.yaml @@ -234,7 +234,7 @@ build_info: output: "target/nextflow/agat/agat_convert_bed2gff" executable: "target/nextflow/agat/agat_convert_bed2gff/main.nf" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -260,134 +260,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/nextflow/agat/agat_convert_bed2gff/main.nf b/target/nextflow/agat/agat_convert_bed2gff/main.nf index 4543737f..b962f9d3 100644 --- a/target/nextflow/agat/agat_convert_bed2gff/main.nf +++ b/target/nextflow/agat/agat_convert_bed2gff/main.nf @@ -3315,7 +3315,7 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/agat/agat_convert_bed2gff", "viash_version" : "0.9.4", - "git_commit" : "736f18e9887893ca830612b48744fe312fe3c696", + "git_commit" : "666507c86de9150bfbdffdb2dbabc1dbde3c3262", "git_remote" : "https://github.com/viash-hub/biobox" }, "package_config" : { @@ -3332,220 +3332,6 @@ meta = [ ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", ".engines[.type == 'docker'].target_tag := 'v0.4.0'" ], - "authors" : [ - { - "name" : "Robrecht Cannoodt", - "roles" : [ - "author", - "maintainer" - ], - "info" : { - "links" : { - "email" : "robrecht@data-intuitive.com", - "github" : "rcannood", - "orcid" : "0000-0003-3641-729X", - "linkedin" : "robrechtcannoodt" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Science Engineer" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Angela Oliveira Pisco", - "roles" : [ - "author" - ], - "info" : { - "role" : "Contributor", - "links" : { - "github" : "aopisco", - "orcid" : "0000-0003-0142-2355", - "linkedin" : "aopisco" - }, - "organizations" : [ - { - "name" : "Insitro", - "href" : "https://insitro.com", - "role" : "Director of Computational Biology" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Dorien Roosen", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dorien@data-intuitive.com", - "github" : "dorien-er", - "linkedin" : "dorien-roosen" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Dries Schaumont", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dries@data-intuitive.com", - "github" : "DriesSchaumont", - "orcid" : "0000-0002-4389-0440", - "linkedin" : "dries-schaumont" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Emma Rousseau", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "emmarousseau", - "linkedin" : "emmarousseau1" - } - } - }, - { - "name" : "Jakub Majercik", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "jakub@data-intuitive.com", - "github" : "jakubmajercik", - "linkedin" : "jakubmajercik" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Bioinformatics Engineer" - } - ] - } - }, - { - "name" : "Kai Waldrant", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "KaiWaldrant", - "orcid" : "0009-0003-8555-1361", - "linkedin" : "kaiwaldrant" - } - } - }, - { - "name" : "Leïla Paquay", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "Leila011", - "linkedin" : "leilapaquay" - } - } - }, - { - "name" : "Sai Nirmayi Yasa", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "sainirmayi", - "linkedin" : "sai-nirmayi-yasa" - } - } - }, - { - "name" : "Theodoro Gasperin Terra Camargo", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "theodorogtc@gmail.com", - "github" : "tgaspe", - "linkedin" : "theodoro-gasperin-terra-camargo" - } - } - }, - { - "name" : "Toni Verbeiren", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "tverbeiren", - "linkedin" : "verbeiren" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist and CEO" - } - ] - } - }, - { - "name" : "Weiwei Schultz", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "linkedin" : "weiwei-schultz" - }, - "organizations" : [ - { - "name" : "Janssen R&D US", - "role" : "Associate Director Data Sciences" - } - ] - } - } - ], "keywords" : [ "bioinformatics", "modules", diff --git a/target/nextflow/agat/agat_convert_embl2gff/.config.vsh.yaml b/target/nextflow/agat/agat_convert_embl2gff/.config.vsh.yaml index 1bee1e6c..da21c798 100644 --- a/target/nextflow/agat/agat_convert_embl2gff/.config.vsh.yaml +++ b/target/nextflow/agat/agat_convert_embl2gff/.config.vsh.yaml @@ -224,7 +224,7 @@ build_info: output: "target/nextflow/agat/agat_convert_embl2gff" executable: "target/nextflow/agat/agat_convert_embl2gff/main.nf" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -250,134 +250,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/nextflow/agat/agat_convert_embl2gff/main.nf b/target/nextflow/agat/agat_convert_embl2gff/main.nf index 3050599f..02e7f46e 100644 --- a/target/nextflow/agat/agat_convert_embl2gff/main.nf +++ b/target/nextflow/agat/agat_convert_embl2gff/main.nf @@ -3308,7 +3308,7 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/agat/agat_convert_embl2gff", "viash_version" : "0.9.4", - "git_commit" : "736f18e9887893ca830612b48744fe312fe3c696", + "git_commit" : "666507c86de9150bfbdffdb2dbabc1dbde3c3262", "git_remote" : "https://github.com/viash-hub/biobox" }, "package_config" : { @@ -3325,220 +3325,6 @@ meta = [ ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", ".engines[.type == 'docker'].target_tag := 'v0.4.0'" ], - "authors" : [ - { - "name" : "Robrecht Cannoodt", - "roles" : [ - "author", - "maintainer" - ], - "info" : { - "links" : { - "email" : "robrecht@data-intuitive.com", - "github" : "rcannood", - "orcid" : "0000-0003-3641-729X", - "linkedin" : "robrechtcannoodt" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Science Engineer" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Angela Oliveira Pisco", - "roles" : [ - "author" - ], - "info" : { - "role" : "Contributor", - "links" : { - "github" : "aopisco", - "orcid" : "0000-0003-0142-2355", - "linkedin" : "aopisco" - }, - "organizations" : [ - { - "name" : "Insitro", - "href" : "https://insitro.com", - "role" : "Director of Computational Biology" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Dorien Roosen", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dorien@data-intuitive.com", - "github" : "dorien-er", - "linkedin" : "dorien-roosen" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Dries Schaumont", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dries@data-intuitive.com", - "github" : "DriesSchaumont", - "orcid" : "0000-0002-4389-0440", - "linkedin" : "dries-schaumont" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Emma Rousseau", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "emmarousseau", - "linkedin" : "emmarousseau1" - } - } - }, - { - "name" : "Jakub Majercik", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "jakub@data-intuitive.com", - "github" : "jakubmajercik", - "linkedin" : "jakubmajercik" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Bioinformatics Engineer" - } - ] - } - }, - { - "name" : "Kai Waldrant", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "KaiWaldrant", - "orcid" : "0009-0003-8555-1361", - "linkedin" : "kaiwaldrant" - } - } - }, - { - "name" : "Leïla Paquay", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "Leila011", - "linkedin" : "leilapaquay" - } - } - }, - { - "name" : "Sai Nirmayi Yasa", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "sainirmayi", - "linkedin" : "sai-nirmayi-yasa" - } - } - }, - { - "name" : "Theodoro Gasperin Terra Camargo", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "theodorogtc@gmail.com", - "github" : "tgaspe", - "linkedin" : "theodoro-gasperin-terra-camargo" - } - } - }, - { - "name" : "Toni Verbeiren", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "tverbeiren", - "linkedin" : "verbeiren" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist and CEO" - } - ] - } - }, - { - "name" : "Weiwei Schultz", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "linkedin" : "weiwei-schultz" - }, - "organizations" : [ - { - "name" : "Janssen R&D US", - "role" : "Associate Director Data Sciences" - } - ] - } - } - ], "keywords" : [ "bioinformatics", "modules", diff --git a/target/nextflow/agat/agat_convert_genscan2gff/.config.vsh.yaml b/target/nextflow/agat/agat_convert_genscan2gff/.config.vsh.yaml index 6e559cf0..1c89d4d9 100644 --- a/target/nextflow/agat/agat_convert_genscan2gff/.config.vsh.yaml +++ b/target/nextflow/agat/agat_convert_genscan2gff/.config.vsh.yaml @@ -229,7 +229,7 @@ build_info: output: "target/nextflow/agat/agat_convert_genscan2gff" executable: "target/nextflow/agat/agat_convert_genscan2gff/main.nf" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -255,134 +255,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/nextflow/agat/agat_convert_genscan2gff/main.nf b/target/nextflow/agat/agat_convert_genscan2gff/main.nf index cc5ecf88..2b293a03 100644 --- a/target/nextflow/agat/agat_convert_genscan2gff/main.nf +++ b/target/nextflow/agat/agat_convert_genscan2gff/main.nf @@ -3310,7 +3310,7 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/agat/agat_convert_genscan2gff", "viash_version" : "0.9.4", - "git_commit" : "736f18e9887893ca830612b48744fe312fe3c696", + "git_commit" : "666507c86de9150bfbdffdb2dbabc1dbde3c3262", "git_remote" : "https://github.com/viash-hub/biobox" }, "package_config" : { @@ -3327,220 +3327,6 @@ meta = [ ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", ".engines[.type == 'docker'].target_tag := 'v0.4.0'" ], - "authors" : [ - { - "name" : "Robrecht Cannoodt", - "roles" : [ - "author", - "maintainer" - ], - "info" : { - "links" : { - "email" : "robrecht@data-intuitive.com", - "github" : "rcannood", - "orcid" : "0000-0003-3641-729X", - "linkedin" : "robrechtcannoodt" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Science Engineer" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Angela Oliveira Pisco", - "roles" : [ - "author" - ], - "info" : { - "role" : "Contributor", - "links" : { - "github" : "aopisco", - "orcid" : "0000-0003-0142-2355", - "linkedin" : "aopisco" - }, - "organizations" : [ - { - "name" : "Insitro", - "href" : "https://insitro.com", - "role" : "Director of Computational Biology" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Dorien Roosen", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dorien@data-intuitive.com", - "github" : "dorien-er", - "linkedin" : "dorien-roosen" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Dries Schaumont", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dries@data-intuitive.com", - "github" : "DriesSchaumont", - "orcid" : "0000-0002-4389-0440", - "linkedin" : "dries-schaumont" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Emma Rousseau", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "emmarousseau", - "linkedin" : "emmarousseau1" - } - } - }, - { - "name" : "Jakub Majercik", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "jakub@data-intuitive.com", - "github" : "jakubmajercik", - "linkedin" : "jakubmajercik" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Bioinformatics Engineer" - } - ] - } - }, - { - "name" : "Kai Waldrant", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "KaiWaldrant", - "orcid" : "0009-0003-8555-1361", - "linkedin" : "kaiwaldrant" - } - } - }, - { - "name" : "Leïla Paquay", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "Leila011", - "linkedin" : "leilapaquay" - } - } - }, - { - "name" : "Sai Nirmayi Yasa", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "sainirmayi", - "linkedin" : "sai-nirmayi-yasa" - } - } - }, - { - "name" : "Theodoro Gasperin Terra Camargo", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "theodorogtc@gmail.com", - "github" : "tgaspe", - "linkedin" : "theodoro-gasperin-terra-camargo" - } - } - }, - { - "name" : "Toni Verbeiren", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "tverbeiren", - "linkedin" : "verbeiren" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist and CEO" - } - ] - } - }, - { - "name" : "Weiwei Schultz", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "linkedin" : "weiwei-schultz" - }, - "organizations" : [ - { - "name" : "Janssen R&D US", - "role" : "Associate Director Data Sciences" - } - ] - } - } - ], "keywords" : [ "bioinformatics", "modules", diff --git a/target/nextflow/agat/agat_convert_mfannot2gff/.config.vsh.yaml b/target/nextflow/agat/agat_convert_mfannot2gff/.config.vsh.yaml index 3b9c825c..85374a20 100644 --- a/target/nextflow/agat/agat_convert_mfannot2gff/.config.vsh.yaml +++ b/target/nextflow/agat/agat_convert_mfannot2gff/.config.vsh.yaml @@ -185,7 +185,7 @@ build_info: output: "target/nextflow/agat/agat_convert_mfannot2gff" executable: "target/nextflow/agat/agat_convert_mfannot2gff/main.nf" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -211,134 +211,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/nextflow/agat/agat_convert_mfannot2gff/main.nf b/target/nextflow/agat/agat_convert_mfannot2gff/main.nf index f19a2936..4d8658d4 100644 --- a/target/nextflow/agat/agat_convert_mfannot2gff/main.nf +++ b/target/nextflow/agat/agat_convert_mfannot2gff/main.nf @@ -3270,7 +3270,7 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/agat/agat_convert_mfannot2gff", "viash_version" : "0.9.4", - "git_commit" : "736f18e9887893ca830612b48744fe312fe3c696", + "git_commit" : "666507c86de9150bfbdffdb2dbabc1dbde3c3262", "git_remote" : "https://github.com/viash-hub/biobox" }, "package_config" : { @@ -3287,220 +3287,6 @@ meta = [ ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", ".engines[.type == 'docker'].target_tag := 'v0.4.0'" ], - "authors" : [ - { - "name" : "Robrecht Cannoodt", - "roles" : [ - "author", - "maintainer" - ], - "info" : { - "links" : { - "email" : "robrecht@data-intuitive.com", - "github" : "rcannood", - "orcid" : "0000-0003-3641-729X", - "linkedin" : "robrechtcannoodt" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Science Engineer" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Angela Oliveira Pisco", - "roles" : [ - "author" - ], - "info" : { - "role" : "Contributor", - "links" : { - "github" : "aopisco", - "orcid" : "0000-0003-0142-2355", - "linkedin" : "aopisco" - }, - "organizations" : [ - { - "name" : "Insitro", - "href" : "https://insitro.com", - "role" : "Director of Computational Biology" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Dorien Roosen", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dorien@data-intuitive.com", - "github" : "dorien-er", - "linkedin" : "dorien-roosen" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Dries Schaumont", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dries@data-intuitive.com", - "github" : "DriesSchaumont", - "orcid" : "0000-0002-4389-0440", - "linkedin" : "dries-schaumont" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Emma Rousseau", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "emmarousseau", - "linkedin" : "emmarousseau1" - } - } - }, - { - "name" : "Jakub Majercik", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "jakub@data-intuitive.com", - "github" : "jakubmajercik", - "linkedin" : "jakubmajercik" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Bioinformatics Engineer" - } - ] - } - }, - { - "name" : "Kai Waldrant", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "KaiWaldrant", - "orcid" : "0009-0003-8555-1361", - "linkedin" : "kaiwaldrant" - } - } - }, - { - "name" : "Leïla Paquay", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "Leila011", - "linkedin" : "leilapaquay" - } - } - }, - { - "name" : "Sai Nirmayi Yasa", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "sainirmayi", - "linkedin" : "sai-nirmayi-yasa" - } - } - }, - { - "name" : "Theodoro Gasperin Terra Camargo", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "theodorogtc@gmail.com", - "github" : "tgaspe", - "linkedin" : "theodoro-gasperin-terra-camargo" - } - } - }, - { - "name" : "Toni Verbeiren", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "tverbeiren", - "linkedin" : "verbeiren" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist and CEO" - } - ] - } - }, - { - "name" : "Weiwei Schultz", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "linkedin" : "weiwei-schultz" - }, - "organizations" : [ - { - "name" : "Janssen R&D US", - "role" : "Associate Director Data Sciences" - } - ] - } - } - ], "keywords" : [ "bioinformatics", "modules", diff --git a/target/nextflow/agat/agat_convert_sp_gff2gtf/.config.vsh.yaml b/target/nextflow/agat/agat_convert_sp_gff2gtf/.config.vsh.yaml index bc63ad55..4d099162 100644 --- a/target/nextflow/agat/agat_convert_sp_gff2gtf/.config.vsh.yaml +++ b/target/nextflow/agat/agat_convert_sp_gff2gtf/.config.vsh.yaml @@ -227,7 +227,7 @@ build_info: output: "target/nextflow/agat/agat_convert_sp_gff2gtf" executable: "target/nextflow/agat/agat_convert_sp_gff2gtf/main.nf" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -253,134 +253,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/nextflow/agat/agat_convert_sp_gff2gtf/main.nf b/target/nextflow/agat/agat_convert_sp_gff2gtf/main.nf index 60e153f4..4b8024ae 100644 --- a/target/nextflow/agat/agat_convert_sp_gff2gtf/main.nf +++ b/target/nextflow/agat/agat_convert_sp_gff2gtf/main.nf @@ -3291,7 +3291,7 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/agat/agat_convert_sp_gff2gtf", "viash_version" : "0.9.4", - "git_commit" : "736f18e9887893ca830612b48744fe312fe3c696", + "git_commit" : "666507c86de9150bfbdffdb2dbabc1dbde3c3262", "git_remote" : "https://github.com/viash-hub/biobox" }, "package_config" : { @@ -3308,220 +3308,6 @@ meta = [ ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", ".engines[.type == 'docker'].target_tag := 'v0.4.0'" ], - "authors" : [ - { - "name" : "Robrecht Cannoodt", - "roles" : [ - "author", - "maintainer" - ], - "info" : { - "links" : { - "email" : "robrecht@data-intuitive.com", - "github" : "rcannood", - "orcid" : "0000-0003-3641-729X", - "linkedin" : "robrechtcannoodt" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Science Engineer" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Angela Oliveira Pisco", - "roles" : [ - "author" - ], - "info" : { - "role" : "Contributor", - "links" : { - "github" : "aopisco", - "orcid" : "0000-0003-0142-2355", - "linkedin" : "aopisco" - }, - "organizations" : [ - { - "name" : "Insitro", - "href" : "https://insitro.com", - "role" : "Director of Computational Biology" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Dorien Roosen", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dorien@data-intuitive.com", - "github" : "dorien-er", - "linkedin" : "dorien-roosen" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Dries Schaumont", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dries@data-intuitive.com", - "github" : "DriesSchaumont", - "orcid" : "0000-0002-4389-0440", - "linkedin" : "dries-schaumont" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Emma Rousseau", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "emmarousseau", - "linkedin" : "emmarousseau1" - } - } - }, - { - "name" : "Jakub Majercik", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "jakub@data-intuitive.com", - "github" : "jakubmajercik", - "linkedin" : "jakubmajercik" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Bioinformatics Engineer" - } - ] - } - }, - { - "name" : "Kai Waldrant", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "KaiWaldrant", - "orcid" : "0009-0003-8555-1361", - "linkedin" : "kaiwaldrant" - } - } - }, - { - "name" : "Leïla Paquay", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "Leila011", - "linkedin" : "leilapaquay" - } - } - }, - { - "name" : "Sai Nirmayi Yasa", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "sainirmayi", - "linkedin" : "sai-nirmayi-yasa" - } - } - }, - { - "name" : "Theodoro Gasperin Terra Camargo", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "theodorogtc@gmail.com", - "github" : "tgaspe", - "linkedin" : "theodoro-gasperin-terra-camargo" - } - } - }, - { - "name" : "Toni Verbeiren", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "tverbeiren", - "linkedin" : "verbeiren" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist and CEO" - } - ] - } - }, - { - "name" : "Weiwei Schultz", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "linkedin" : "weiwei-schultz" - }, - "organizations" : [ - { - "name" : "Janssen R&D US", - "role" : "Associate Director Data Sciences" - } - ] - } - } - ], "keywords" : [ "bioinformatics", "modules", diff --git a/target/nextflow/agat/agat_convert_sp_gff2tsv/.config.vsh.yaml b/target/nextflow/agat/agat_convert_sp_gff2tsv/.config.vsh.yaml index fcd50a03..3c0d19fc 100644 --- a/target/nextflow/agat/agat_convert_sp_gff2tsv/.config.vsh.yaml +++ b/target/nextflow/agat/agat_convert_sp_gff2tsv/.config.vsh.yaml @@ -187,7 +187,7 @@ build_info: output: "target/nextflow/agat/agat_convert_sp_gff2tsv" executable: "target/nextflow/agat/agat_convert_sp_gff2tsv/main.nf" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -213,134 +213,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/nextflow/agat/agat_convert_sp_gff2tsv/main.nf b/target/nextflow/agat/agat_convert_sp_gff2tsv/main.nf index 57e7f273..5416f27a 100644 --- a/target/nextflow/agat/agat_convert_sp_gff2tsv/main.nf +++ b/target/nextflow/agat/agat_convert_sp_gff2tsv/main.nf @@ -3269,7 +3269,7 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/agat/agat_convert_sp_gff2tsv", "viash_version" : "0.9.4", - "git_commit" : "736f18e9887893ca830612b48744fe312fe3c696", + "git_commit" : "666507c86de9150bfbdffdb2dbabc1dbde3c3262", "git_remote" : "https://github.com/viash-hub/biobox" }, "package_config" : { @@ -3286,220 +3286,6 @@ meta = [ ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", ".engines[.type == 'docker'].target_tag := 'v0.4.0'" ], - "authors" : [ - { - "name" : "Robrecht Cannoodt", - "roles" : [ - "author", - "maintainer" - ], - "info" : { - "links" : { - "email" : "robrecht@data-intuitive.com", - "github" : "rcannood", - "orcid" : "0000-0003-3641-729X", - "linkedin" : "robrechtcannoodt" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Science Engineer" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Angela Oliveira Pisco", - "roles" : [ - "author" - ], - "info" : { - "role" : "Contributor", - "links" : { - "github" : "aopisco", - "orcid" : "0000-0003-0142-2355", - "linkedin" : "aopisco" - }, - "organizations" : [ - { - "name" : "Insitro", - "href" : "https://insitro.com", - "role" : "Director of Computational Biology" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Dorien Roosen", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dorien@data-intuitive.com", - "github" : "dorien-er", - "linkedin" : "dorien-roosen" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Dries Schaumont", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dries@data-intuitive.com", - "github" : "DriesSchaumont", - "orcid" : "0000-0002-4389-0440", - "linkedin" : "dries-schaumont" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Emma Rousseau", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "emmarousseau", - "linkedin" : "emmarousseau1" - } - } - }, - { - "name" : "Jakub Majercik", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "jakub@data-intuitive.com", - "github" : "jakubmajercik", - "linkedin" : "jakubmajercik" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Bioinformatics Engineer" - } - ] - } - }, - { - "name" : "Kai Waldrant", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "KaiWaldrant", - "orcid" : "0009-0003-8555-1361", - "linkedin" : "kaiwaldrant" - } - } - }, - { - "name" : "Leïla Paquay", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "Leila011", - "linkedin" : "leilapaquay" - } - } - }, - { - "name" : "Sai Nirmayi Yasa", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "sainirmayi", - "linkedin" : "sai-nirmayi-yasa" - } - } - }, - { - "name" : "Theodoro Gasperin Terra Camargo", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "theodorogtc@gmail.com", - "github" : "tgaspe", - "linkedin" : "theodoro-gasperin-terra-camargo" - } - } - }, - { - "name" : "Toni Verbeiren", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "tverbeiren", - "linkedin" : "verbeiren" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist and CEO" - } - ] - } - }, - { - "name" : "Weiwei Schultz", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "linkedin" : "weiwei-schultz" - }, - "organizations" : [ - { - "name" : "Janssen R&D US", - "role" : "Associate Director Data Sciences" - } - ] - } - } - ], "keywords" : [ "bioinformatics", "modules", diff --git a/target/nextflow/agat/agat_convert_sp_gxf2gxf/.config.vsh.yaml b/target/nextflow/agat/agat_convert_sp_gxf2gxf/.config.vsh.yaml index 1b39df0c..29d946f0 100644 --- a/target/nextflow/agat/agat_convert_sp_gxf2gxf/.config.vsh.yaml +++ b/target/nextflow/agat/agat_convert_sp_gxf2gxf/.config.vsh.yaml @@ -194,7 +194,7 @@ build_info: output: "target/nextflow/agat/agat_convert_sp_gxf2gxf" executable: "target/nextflow/agat/agat_convert_sp_gxf2gxf/main.nf" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -220,134 +220,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/nextflow/agat/agat_convert_sp_gxf2gxf/main.nf b/target/nextflow/agat/agat_convert_sp_gxf2gxf/main.nf index 03f276ea..45eeca01 100644 --- a/target/nextflow/agat/agat_convert_sp_gxf2gxf/main.nf +++ b/target/nextflow/agat/agat_convert_sp_gxf2gxf/main.nf @@ -3269,7 +3269,7 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/agat/agat_convert_sp_gxf2gxf", "viash_version" : "0.9.4", - "git_commit" : "736f18e9887893ca830612b48744fe312fe3c696", + "git_commit" : "666507c86de9150bfbdffdb2dbabc1dbde3c3262", "git_remote" : "https://github.com/viash-hub/biobox" }, "package_config" : { @@ -3286,220 +3286,6 @@ meta = [ ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", ".engines[.type == 'docker'].target_tag := 'v0.4.0'" ], - "authors" : [ - { - "name" : "Robrecht Cannoodt", - "roles" : [ - "author", - "maintainer" - ], - "info" : { - "links" : { - "email" : "robrecht@data-intuitive.com", - "github" : "rcannood", - "orcid" : "0000-0003-3641-729X", - "linkedin" : "robrechtcannoodt" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Science Engineer" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Angela Oliveira Pisco", - "roles" : [ - "author" - ], - "info" : { - "role" : "Contributor", - "links" : { - "github" : "aopisco", - "orcid" : "0000-0003-0142-2355", - "linkedin" : "aopisco" - }, - "organizations" : [ - { - "name" : "Insitro", - "href" : "https://insitro.com", - "role" : "Director of Computational Biology" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Dorien Roosen", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dorien@data-intuitive.com", - "github" : "dorien-er", - "linkedin" : "dorien-roosen" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Dries Schaumont", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dries@data-intuitive.com", - "github" : "DriesSchaumont", - "orcid" : "0000-0002-4389-0440", - "linkedin" : "dries-schaumont" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Emma Rousseau", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "emmarousseau", - "linkedin" : "emmarousseau1" - } - } - }, - { - "name" : "Jakub Majercik", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "jakub@data-intuitive.com", - "github" : "jakubmajercik", - "linkedin" : "jakubmajercik" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Bioinformatics Engineer" - } - ] - } - }, - { - "name" : "Kai Waldrant", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "KaiWaldrant", - "orcid" : "0009-0003-8555-1361", - "linkedin" : "kaiwaldrant" - } - } - }, - { - "name" : "Leïla Paquay", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "Leila011", - "linkedin" : "leilapaquay" - } - } - }, - { - "name" : "Sai Nirmayi Yasa", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "sainirmayi", - "linkedin" : "sai-nirmayi-yasa" - } - } - }, - { - "name" : "Theodoro Gasperin Terra Camargo", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "theodorogtc@gmail.com", - "github" : "tgaspe", - "linkedin" : "theodoro-gasperin-terra-camargo" - } - } - }, - { - "name" : "Toni Verbeiren", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "tverbeiren", - "linkedin" : "verbeiren" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist and CEO" - } - ] - } - }, - { - "name" : "Weiwei Schultz", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "linkedin" : "weiwei-schultz" - }, - "organizations" : [ - { - "name" : "Janssen R&D US", - "role" : "Associate Director Data Sciences" - } - ] - } - } - ], "keywords" : [ "bioinformatics", "modules", diff --git a/target/nextflow/agat/agat_sp_add_introns/.config.vsh.yaml b/target/nextflow/agat/agat_sp_add_introns/.config.vsh.yaml index e31ded02..9147bf37 100644 --- a/target/nextflow/agat/agat_sp_add_introns/.config.vsh.yaml +++ b/target/nextflow/agat/agat_sp_add_introns/.config.vsh.yaml @@ -185,7 +185,7 @@ build_info: output: "target/nextflow/agat/agat_sp_add_introns" executable: "target/nextflow/agat/agat_sp_add_introns/main.nf" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -211,134 +211,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/nextflow/agat/agat_sp_add_introns/main.nf b/target/nextflow/agat/agat_sp_add_introns/main.nf index d0afc6eb..f72e683b 100644 --- a/target/nextflow/agat/agat_sp_add_introns/main.nf +++ b/target/nextflow/agat/agat_sp_add_introns/main.nf @@ -3272,7 +3272,7 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/agat/agat_sp_add_introns", "viash_version" : "0.9.4", - "git_commit" : "736f18e9887893ca830612b48744fe312fe3c696", + "git_commit" : "666507c86de9150bfbdffdb2dbabc1dbde3c3262", "git_remote" : "https://github.com/viash-hub/biobox" }, "package_config" : { @@ -3289,220 +3289,6 @@ meta = [ ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", ".engines[.type == 'docker'].target_tag := 'v0.4.0'" ], - "authors" : [ - { - "name" : "Robrecht Cannoodt", - "roles" : [ - "author", - "maintainer" - ], - "info" : { - "links" : { - "email" : "robrecht@data-intuitive.com", - "github" : "rcannood", - "orcid" : "0000-0003-3641-729X", - "linkedin" : "robrechtcannoodt" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Science Engineer" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Angela Oliveira Pisco", - "roles" : [ - "author" - ], - "info" : { - "role" : "Contributor", - "links" : { - "github" : "aopisco", - "orcid" : "0000-0003-0142-2355", - "linkedin" : "aopisco" - }, - "organizations" : [ - { - "name" : "Insitro", - "href" : "https://insitro.com", - "role" : "Director of Computational Biology" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Dorien Roosen", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dorien@data-intuitive.com", - "github" : "dorien-er", - "linkedin" : "dorien-roosen" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Dries Schaumont", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dries@data-intuitive.com", - "github" : "DriesSchaumont", - "orcid" : "0000-0002-4389-0440", - "linkedin" : "dries-schaumont" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Emma Rousseau", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "emmarousseau", - "linkedin" : "emmarousseau1" - } - } - }, - { - "name" : "Jakub Majercik", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "jakub@data-intuitive.com", - "github" : "jakubmajercik", - "linkedin" : "jakubmajercik" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Bioinformatics Engineer" - } - ] - } - }, - { - "name" : "Kai Waldrant", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "KaiWaldrant", - "orcid" : "0009-0003-8555-1361", - "linkedin" : "kaiwaldrant" - } - } - }, - { - "name" : "Leïla Paquay", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "Leila011", - "linkedin" : "leilapaquay" - } - } - }, - { - "name" : "Sai Nirmayi Yasa", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "sainirmayi", - "linkedin" : "sai-nirmayi-yasa" - } - } - }, - { - "name" : "Theodoro Gasperin Terra Camargo", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "theodorogtc@gmail.com", - "github" : "tgaspe", - "linkedin" : "theodoro-gasperin-terra-camargo" - } - } - }, - { - "name" : "Toni Verbeiren", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "tverbeiren", - "linkedin" : "verbeiren" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist and CEO" - } - ] - } - }, - { - "name" : "Weiwei Schultz", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "linkedin" : "weiwei-schultz" - }, - "organizations" : [ - { - "name" : "Janssen R&D US", - "role" : "Associate Director Data Sciences" - } - ] - } - } - ], "keywords" : [ "bioinformatics", "modules", diff --git a/target/nextflow/agat/agat_sp_filter_feature_from_kill_list/.config.vsh.yaml b/target/nextflow/agat/agat_sp_filter_feature_from_kill_list/.config.vsh.yaml index ff267bfa..c8b29183 100644 --- a/target/nextflow/agat/agat_sp_filter_feature_from_kill_list/.config.vsh.yaml +++ b/target/nextflow/agat/agat_sp_filter_feature_from_kill_list/.config.vsh.yaml @@ -235,7 +235,7 @@ build_info: output: "target/nextflow/agat/agat_sp_filter_feature_from_kill_list" executable: "target/nextflow/agat/agat_sp_filter_feature_from_kill_list/main.nf" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -261,134 +261,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/nextflow/agat/agat_sp_filter_feature_from_kill_list/main.nf b/target/nextflow/agat/agat_sp_filter_feature_from_kill_list/main.nf index c34cf56e..13a84144 100644 --- a/target/nextflow/agat/agat_sp_filter_feature_from_kill_list/main.nf +++ b/target/nextflow/agat/agat_sp_filter_feature_from_kill_list/main.nf @@ -3319,7 +3319,7 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/agat/agat_sp_filter_feature_from_kill_list", "viash_version" : "0.9.4", - "git_commit" : "736f18e9887893ca830612b48744fe312fe3c696", + "git_commit" : "666507c86de9150bfbdffdb2dbabc1dbde3c3262", "git_remote" : "https://github.com/viash-hub/biobox" }, "package_config" : { @@ -3336,220 +3336,6 @@ meta = [ ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", ".engines[.type == 'docker'].target_tag := 'v0.4.0'" ], - "authors" : [ - { - "name" : "Robrecht Cannoodt", - "roles" : [ - "author", - "maintainer" - ], - "info" : { - "links" : { - "email" : "robrecht@data-intuitive.com", - "github" : "rcannood", - "orcid" : "0000-0003-3641-729X", - "linkedin" : "robrechtcannoodt" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Science Engineer" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Angela Oliveira Pisco", - "roles" : [ - "author" - ], - "info" : { - "role" : "Contributor", - "links" : { - "github" : "aopisco", - "orcid" : "0000-0003-0142-2355", - "linkedin" : "aopisco" - }, - "organizations" : [ - { - "name" : "Insitro", - "href" : "https://insitro.com", - "role" : "Director of Computational Biology" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Dorien Roosen", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dorien@data-intuitive.com", - "github" : "dorien-er", - "linkedin" : "dorien-roosen" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Dries Schaumont", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dries@data-intuitive.com", - "github" : "DriesSchaumont", - "orcid" : "0000-0002-4389-0440", - "linkedin" : "dries-schaumont" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Emma Rousseau", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "emmarousseau", - "linkedin" : "emmarousseau1" - } - } - }, - { - "name" : "Jakub Majercik", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "jakub@data-intuitive.com", - "github" : "jakubmajercik", - "linkedin" : "jakubmajercik" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Bioinformatics Engineer" - } - ] - } - }, - { - "name" : "Kai Waldrant", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "KaiWaldrant", - "orcid" : "0009-0003-8555-1361", - "linkedin" : "kaiwaldrant" - } - } - }, - { - "name" : "Leïla Paquay", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "Leila011", - "linkedin" : "leilapaquay" - } - } - }, - { - "name" : "Sai Nirmayi Yasa", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "sainirmayi", - "linkedin" : "sai-nirmayi-yasa" - } - } - }, - { - "name" : "Theodoro Gasperin Terra Camargo", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "theodorogtc@gmail.com", - "github" : "tgaspe", - "linkedin" : "theodoro-gasperin-terra-camargo" - } - } - }, - { - "name" : "Toni Verbeiren", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "tverbeiren", - "linkedin" : "verbeiren" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist and CEO" - } - ] - } - }, - { - "name" : "Weiwei Schultz", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "linkedin" : "weiwei-schultz" - }, - "organizations" : [ - { - "name" : "Janssen R&D US", - "role" : "Associate Director Data Sciences" - } - ] - } - } - ], "keywords" : [ "bioinformatics", "modules", diff --git a/target/nextflow/agat/agat_sp_merge_annotations/.config.vsh.yaml b/target/nextflow/agat/agat_sp_merge_annotations/.config.vsh.yaml index 8272792c..fe106aad 100644 --- a/target/nextflow/agat/agat_sp_merge_annotations/.config.vsh.yaml +++ b/target/nextflow/agat/agat_sp_merge_annotations/.config.vsh.yaml @@ -183,7 +183,7 @@ build_info: output: "target/nextflow/agat/agat_sp_merge_annotations" executable: "target/nextflow/agat/agat_sp_merge_annotations/main.nf" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -209,134 +209,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/nextflow/agat/agat_sp_merge_annotations/main.nf b/target/nextflow/agat/agat_sp_merge_annotations/main.nf index 884d6e85..0e956ddc 100644 --- a/target/nextflow/agat/agat_sp_merge_annotations/main.nf +++ b/target/nextflow/agat/agat_sp_merge_annotations/main.nf @@ -3269,7 +3269,7 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/agat/agat_sp_merge_annotations", "viash_version" : "0.9.4", - "git_commit" : "736f18e9887893ca830612b48744fe312fe3c696", + "git_commit" : "666507c86de9150bfbdffdb2dbabc1dbde3c3262", "git_remote" : "https://github.com/viash-hub/biobox" }, "package_config" : { @@ -3286,220 +3286,6 @@ meta = [ ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", ".engines[.type == 'docker'].target_tag := 'v0.4.0'" ], - "authors" : [ - { - "name" : "Robrecht Cannoodt", - "roles" : [ - "author", - "maintainer" - ], - "info" : { - "links" : { - "email" : "robrecht@data-intuitive.com", - "github" : "rcannood", - "orcid" : "0000-0003-3641-729X", - "linkedin" : "robrechtcannoodt" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Science Engineer" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Angela Oliveira Pisco", - "roles" : [ - "author" - ], - "info" : { - "role" : "Contributor", - "links" : { - "github" : "aopisco", - "orcid" : "0000-0003-0142-2355", - "linkedin" : "aopisco" - }, - "organizations" : [ - { - "name" : "Insitro", - "href" : "https://insitro.com", - "role" : "Director of Computational Biology" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Dorien Roosen", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dorien@data-intuitive.com", - "github" : "dorien-er", - "linkedin" : "dorien-roosen" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Dries Schaumont", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dries@data-intuitive.com", - "github" : "DriesSchaumont", - "orcid" : "0000-0002-4389-0440", - "linkedin" : "dries-schaumont" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Emma Rousseau", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "emmarousseau", - "linkedin" : "emmarousseau1" - } - } - }, - { - "name" : "Jakub Majercik", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "jakub@data-intuitive.com", - "github" : "jakubmajercik", - "linkedin" : "jakubmajercik" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Bioinformatics Engineer" - } - ] - } - }, - { - "name" : "Kai Waldrant", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "KaiWaldrant", - "orcid" : "0009-0003-8555-1361", - "linkedin" : "kaiwaldrant" - } - } - }, - { - "name" : "Leïla Paquay", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "Leila011", - "linkedin" : "leilapaquay" - } - } - }, - { - "name" : "Sai Nirmayi Yasa", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "sainirmayi", - "linkedin" : "sai-nirmayi-yasa" - } - } - }, - { - "name" : "Theodoro Gasperin Terra Camargo", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "theodorogtc@gmail.com", - "github" : "tgaspe", - "linkedin" : "theodoro-gasperin-terra-camargo" - } - } - }, - { - "name" : "Toni Verbeiren", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "tverbeiren", - "linkedin" : "verbeiren" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist and CEO" - } - ] - } - }, - { - "name" : "Weiwei Schultz", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "linkedin" : "weiwei-schultz" - }, - "organizations" : [ - { - "name" : "Janssen R&D US", - "role" : "Associate Director Data Sciences" - } - ] - } - } - ], "keywords" : [ "bioinformatics", "modules", diff --git a/target/nextflow/agat/agat_sp_statistics/.config.vsh.yaml b/target/nextflow/agat/agat_sp_statistics/.config.vsh.yaml index 29c138ad..1a1079bd 100644 --- a/target/nextflow/agat/agat_sp_statistics/.config.vsh.yaml +++ b/target/nextflow/agat/agat_sp_statistics/.config.vsh.yaml @@ -230,7 +230,7 @@ build_info: output: "target/nextflow/agat/agat_sp_statistics" executable: "target/nextflow/agat/agat_sp_statistics/main.nf" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -256,134 +256,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/nextflow/agat/agat_sp_statistics/main.nf b/target/nextflow/agat/agat_sp_statistics/main.nf index 7a47603e..c74e593d 100644 --- a/target/nextflow/agat/agat_sp_statistics/main.nf +++ b/target/nextflow/agat/agat_sp_statistics/main.nf @@ -3319,7 +3319,7 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/agat/agat_sp_statistics", "viash_version" : "0.9.4", - "git_commit" : "736f18e9887893ca830612b48744fe312fe3c696", + "git_commit" : "666507c86de9150bfbdffdb2dbabc1dbde3c3262", "git_remote" : "https://github.com/viash-hub/biobox" }, "package_config" : { @@ -3336,220 +3336,6 @@ meta = [ ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", ".engines[.type == 'docker'].target_tag := 'v0.4.0'" ], - "authors" : [ - { - "name" : "Robrecht Cannoodt", - "roles" : [ - "author", - "maintainer" - ], - "info" : { - "links" : { - "email" : "robrecht@data-intuitive.com", - "github" : "rcannood", - "orcid" : "0000-0003-3641-729X", - "linkedin" : "robrechtcannoodt" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Science Engineer" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Angela Oliveira Pisco", - "roles" : [ - "author" - ], - "info" : { - "role" : "Contributor", - "links" : { - "github" : "aopisco", - "orcid" : "0000-0003-0142-2355", - "linkedin" : "aopisco" - }, - "organizations" : [ - { - "name" : "Insitro", - "href" : "https://insitro.com", - "role" : "Director of Computational Biology" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Dorien Roosen", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dorien@data-intuitive.com", - "github" : "dorien-er", - "linkedin" : "dorien-roosen" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Dries Schaumont", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dries@data-intuitive.com", - "github" : "DriesSchaumont", - "orcid" : "0000-0002-4389-0440", - "linkedin" : "dries-schaumont" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Emma Rousseau", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "emmarousseau", - "linkedin" : "emmarousseau1" - } - } - }, - { - "name" : "Jakub Majercik", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "jakub@data-intuitive.com", - "github" : "jakubmajercik", - "linkedin" : "jakubmajercik" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Bioinformatics Engineer" - } - ] - } - }, - { - "name" : "Kai Waldrant", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "KaiWaldrant", - "orcid" : "0009-0003-8555-1361", - "linkedin" : "kaiwaldrant" - } - } - }, - { - "name" : "Leïla Paquay", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "Leila011", - "linkedin" : "leilapaquay" - } - } - }, - { - "name" : "Sai Nirmayi Yasa", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "sainirmayi", - "linkedin" : "sai-nirmayi-yasa" - } - } - }, - { - "name" : "Theodoro Gasperin Terra Camargo", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "theodorogtc@gmail.com", - "github" : "tgaspe", - "linkedin" : "theodoro-gasperin-terra-camargo" - } - } - }, - { - "name" : "Toni Verbeiren", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "tverbeiren", - "linkedin" : "verbeiren" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist and CEO" - } - ] - } - }, - { - "name" : "Weiwei Schultz", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "linkedin" : "weiwei-schultz" - }, - "organizations" : [ - { - "name" : "Janssen R&D US", - "role" : "Associate Director Data Sciences" - } - ] - } - } - ], "keywords" : [ "bioinformatics", "modules", diff --git a/target/nextflow/agat/agat_sq_stat_basic/.config.vsh.yaml b/target/nextflow/agat/agat_sq_stat_basic/.config.vsh.yaml index d149a26a..05b2b27e 100644 --- a/target/nextflow/agat/agat_sq_stat_basic/.config.vsh.yaml +++ b/target/nextflow/agat/agat_sq_stat_basic/.config.vsh.yaml @@ -226,7 +226,7 @@ build_info: output: "target/nextflow/agat/agat_sq_stat_basic" executable: "target/nextflow/agat/agat_sq_stat_basic/main.nf" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -252,134 +252,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/nextflow/agat/agat_sq_stat_basic/main.nf b/target/nextflow/agat/agat_sq_stat_basic/main.nf index 9a013d93..ef7cc71a 100644 --- a/target/nextflow/agat/agat_sq_stat_basic/main.nf +++ b/target/nextflow/agat/agat_sq_stat_basic/main.nf @@ -3305,7 +3305,7 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/agat/agat_sq_stat_basic", "viash_version" : "0.9.4", - "git_commit" : "736f18e9887893ca830612b48744fe312fe3c696", + "git_commit" : "666507c86de9150bfbdffdb2dbabc1dbde3c3262", "git_remote" : "https://github.com/viash-hub/biobox" }, "package_config" : { @@ -3322,220 +3322,6 @@ meta = [ ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", ".engines[.type == 'docker'].target_tag := 'v0.4.0'" ], - "authors" : [ - { - "name" : "Robrecht Cannoodt", - "roles" : [ - "author", - "maintainer" - ], - "info" : { - "links" : { - "email" : "robrecht@data-intuitive.com", - "github" : "rcannood", - "orcid" : "0000-0003-3641-729X", - "linkedin" : "robrechtcannoodt" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Science Engineer" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Angela Oliveira Pisco", - "roles" : [ - "author" - ], - "info" : { - "role" : "Contributor", - "links" : { - "github" : "aopisco", - "orcid" : "0000-0003-0142-2355", - "linkedin" : "aopisco" - }, - "organizations" : [ - { - "name" : "Insitro", - "href" : "https://insitro.com", - "role" : "Director of Computational Biology" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Dorien Roosen", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dorien@data-intuitive.com", - "github" : "dorien-er", - "linkedin" : "dorien-roosen" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Dries Schaumont", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dries@data-intuitive.com", - "github" : "DriesSchaumont", - "orcid" : "0000-0002-4389-0440", - "linkedin" : "dries-schaumont" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Emma Rousseau", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "emmarousseau", - "linkedin" : "emmarousseau1" - } - } - }, - { - "name" : "Jakub Majercik", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "jakub@data-intuitive.com", - "github" : "jakubmajercik", - "linkedin" : "jakubmajercik" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Bioinformatics Engineer" - } - ] - } - }, - { - "name" : "Kai Waldrant", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "KaiWaldrant", - "orcid" : "0009-0003-8555-1361", - "linkedin" : "kaiwaldrant" - } - } - }, - { - "name" : "Leïla Paquay", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "Leila011", - "linkedin" : "leilapaquay" - } - } - }, - { - "name" : "Sai Nirmayi Yasa", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "sainirmayi", - "linkedin" : "sai-nirmayi-yasa" - } - } - }, - { - "name" : "Theodoro Gasperin Terra Camargo", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "theodorogtc@gmail.com", - "github" : "tgaspe", - "linkedin" : "theodoro-gasperin-terra-camargo" - } - } - }, - { - "name" : "Toni Verbeiren", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "tverbeiren", - "linkedin" : "verbeiren" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist and CEO" - } - ] - } - }, - { - "name" : "Weiwei Schultz", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "linkedin" : "weiwei-schultz" - }, - "organizations" : [ - { - "name" : "Janssen R&D US", - "role" : "Associate Director Data Sciences" - } - ] - } - } - ], "keywords" : [ "bioinformatics", "modules", diff --git a/target/nextflow/arriba/.config.vsh.yaml b/target/nextflow/arriba/.config.vsh.yaml index 0abd98d9..ade8a19a 100644 --- a/target/nextflow/arriba/.config.vsh.yaml +++ b/target/nextflow/arriba/.config.vsh.yaml @@ -729,7 +729,7 @@ build_info: output: "target/nextflow/arriba" executable: "target/nextflow/arriba/main.nf" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -755,134 +755,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/nextflow/arriba/main.nf b/target/nextflow/arriba/main.nf index 88c92e9c..6f315ab6 100644 --- a/target/nextflow/arriba/main.nf +++ b/target/nextflow/arriba/main.nf @@ -3824,7 +3824,7 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/arriba", "viash_version" : "0.9.4", - "git_commit" : "736f18e9887893ca830612b48744fe312fe3c696", + "git_commit" : "666507c86de9150bfbdffdb2dbabc1dbde3c3262", "git_remote" : "https://github.com/viash-hub/biobox" }, "package_config" : { @@ -3841,220 +3841,6 @@ meta = [ ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", ".engines[.type == 'docker'].target_tag := 'v0.4.0'" ], - "authors" : [ - { - "name" : "Robrecht Cannoodt", - "roles" : [ - "author", - "maintainer" - ], - "info" : { - "links" : { - "email" : "robrecht@data-intuitive.com", - "github" : "rcannood", - "orcid" : "0000-0003-3641-729X", - "linkedin" : "robrechtcannoodt" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Science Engineer" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Angela Oliveira Pisco", - "roles" : [ - "author" - ], - "info" : { - "role" : "Contributor", - "links" : { - "github" : "aopisco", - "orcid" : "0000-0003-0142-2355", - "linkedin" : "aopisco" - }, - "organizations" : [ - { - "name" : "Insitro", - "href" : "https://insitro.com", - "role" : "Director of Computational Biology" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Dorien Roosen", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dorien@data-intuitive.com", - "github" : "dorien-er", - "linkedin" : "dorien-roosen" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Dries Schaumont", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dries@data-intuitive.com", - "github" : "DriesSchaumont", - "orcid" : "0000-0002-4389-0440", - "linkedin" : "dries-schaumont" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Emma Rousseau", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "emmarousseau", - "linkedin" : "emmarousseau1" - } - } - }, - { - "name" : "Jakub Majercik", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "jakub@data-intuitive.com", - "github" : "jakubmajercik", - "linkedin" : "jakubmajercik" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Bioinformatics Engineer" - } - ] - } - }, - { - "name" : "Kai Waldrant", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "KaiWaldrant", - "orcid" : "0009-0003-8555-1361", - "linkedin" : "kaiwaldrant" - } - } - }, - { - "name" : "Leïla Paquay", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "Leila011", - "linkedin" : "leilapaquay" - } - } - }, - { - "name" : "Sai Nirmayi Yasa", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "sainirmayi", - "linkedin" : "sai-nirmayi-yasa" - } - } - }, - { - "name" : "Theodoro Gasperin Terra Camargo", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "theodorogtc@gmail.com", - "github" : "tgaspe", - "linkedin" : "theodoro-gasperin-terra-camargo" - } - } - }, - { - "name" : "Toni Verbeiren", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "tverbeiren", - "linkedin" : "verbeiren" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist and CEO" - } - ] - } - }, - { - "name" : "Weiwei Schultz", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "linkedin" : "weiwei-schultz" - }, - "organizations" : [ - { - "name" : "Janssen R&D US", - "role" : "Associate Director Data Sciences" - } - ] - } - } - ], "keywords" : [ "bioinformatics", "modules", diff --git a/target/nextflow/bases2fastq/.config.vsh.yaml b/target/nextflow/bases2fastq/.config.vsh.yaml index 174cb7ba..3f6a1b1d 100644 --- a/target/nextflow/bases2fastq/.config.vsh.yaml +++ b/target/nextflow/bases2fastq/.config.vsh.yaml @@ -452,7 +452,7 @@ build_info: output: "target/nextflow/bases2fastq" executable: "target/nextflow/bases2fastq/main.nf" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -478,134 +478,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/nextflow/bases2fastq/main.nf b/target/nextflow/bases2fastq/main.nf index a351f56a..c8880666 100644 --- a/target/nextflow/bases2fastq/main.nf +++ b/target/nextflow/bases2fastq/main.nf @@ -3569,7 +3569,7 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/bases2fastq", "viash_version" : "0.9.4", - "git_commit" : "736f18e9887893ca830612b48744fe312fe3c696", + "git_commit" : "666507c86de9150bfbdffdb2dbabc1dbde3c3262", "git_remote" : "https://github.com/viash-hub/biobox" }, "package_config" : { @@ -3586,220 +3586,6 @@ meta = [ ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", ".engines[.type == 'docker'].target_tag := 'v0.4.0'" ], - "authors" : [ - { - "name" : "Robrecht Cannoodt", - "roles" : [ - "author", - "maintainer" - ], - "info" : { - "links" : { - "email" : "robrecht@data-intuitive.com", - "github" : "rcannood", - "orcid" : "0000-0003-3641-729X", - "linkedin" : "robrechtcannoodt" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Science Engineer" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Angela Oliveira Pisco", - "roles" : [ - "author" - ], - "info" : { - "role" : "Contributor", - "links" : { - "github" : "aopisco", - "orcid" : "0000-0003-0142-2355", - "linkedin" : "aopisco" - }, - "organizations" : [ - { - "name" : "Insitro", - "href" : "https://insitro.com", - "role" : "Director of Computational Biology" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Dorien Roosen", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dorien@data-intuitive.com", - "github" : "dorien-er", - "linkedin" : "dorien-roosen" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Dries Schaumont", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dries@data-intuitive.com", - "github" : "DriesSchaumont", - "orcid" : "0000-0002-4389-0440", - "linkedin" : "dries-schaumont" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Emma Rousseau", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "emmarousseau", - "linkedin" : "emmarousseau1" - } - } - }, - { - "name" : "Jakub Majercik", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "jakub@data-intuitive.com", - "github" : "jakubmajercik", - "linkedin" : "jakubmajercik" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Bioinformatics Engineer" - } - ] - } - }, - { - "name" : "Kai Waldrant", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "KaiWaldrant", - "orcid" : "0009-0003-8555-1361", - "linkedin" : "kaiwaldrant" - } - } - }, - { - "name" : "Leïla Paquay", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "Leila011", - "linkedin" : "leilapaquay" - } - } - }, - { - "name" : "Sai Nirmayi Yasa", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "sainirmayi", - "linkedin" : "sai-nirmayi-yasa" - } - } - }, - { - "name" : "Theodoro Gasperin Terra Camargo", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "theodorogtc@gmail.com", - "github" : "tgaspe", - "linkedin" : "theodoro-gasperin-terra-camargo" - } - } - }, - { - "name" : "Toni Verbeiren", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "tverbeiren", - "linkedin" : "verbeiren" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist and CEO" - } - ] - } - }, - { - "name" : "Weiwei Schultz", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "linkedin" : "weiwei-schultz" - }, - "organizations" : [ - { - "name" : "Janssen R&D US", - "role" : "Associate Director Data Sciences" - } - ] - } - } - ], "keywords" : [ "bioinformatics", "modules", diff --git a/target/nextflow/bbmap/bbmap_bbsplit/.config.vsh.yaml b/target/nextflow/bbmap/bbmap_bbsplit/.config.vsh.yaml index d1c8e49d..0aeb1075 100644 --- a/target/nextflow/bbmap/bbmap_bbsplit/.config.vsh.yaml +++ b/target/nextflow/bbmap/bbmap_bbsplit/.config.vsh.yaml @@ -371,7 +371,7 @@ build_info: output: "target/nextflow/bbmap/bbmap_bbsplit" executable: "target/nextflow/bbmap/bbmap_bbsplit/main.nf" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -397,134 +397,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/nextflow/bbmap/bbmap_bbsplit/main.nf b/target/nextflow/bbmap/bbmap_bbsplit/main.nf index 60d4b889..210fcc9b 100644 --- a/target/nextflow/bbmap/bbmap_bbsplit/main.nf +++ b/target/nextflow/bbmap/bbmap_bbsplit/main.nf @@ -3450,7 +3450,7 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/bbmap/bbmap_bbsplit", "viash_version" : "0.9.4", - "git_commit" : "736f18e9887893ca830612b48744fe312fe3c696", + "git_commit" : "666507c86de9150bfbdffdb2dbabc1dbde3c3262", "git_remote" : "https://github.com/viash-hub/biobox" }, "package_config" : { @@ -3467,220 +3467,6 @@ meta = [ ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", ".engines[.type == 'docker'].target_tag := 'v0.4.0'" ], - "authors" : [ - { - "name" : "Robrecht Cannoodt", - "roles" : [ - "author", - "maintainer" - ], - "info" : { - "links" : { - "email" : "robrecht@data-intuitive.com", - "github" : "rcannood", - "orcid" : "0000-0003-3641-729X", - "linkedin" : "robrechtcannoodt" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Science Engineer" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Angela Oliveira Pisco", - "roles" : [ - "author" - ], - "info" : { - "role" : "Contributor", - "links" : { - "github" : "aopisco", - "orcid" : "0000-0003-0142-2355", - "linkedin" : "aopisco" - }, - "organizations" : [ - { - "name" : "Insitro", - "href" : "https://insitro.com", - "role" : "Director of Computational Biology" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Dorien Roosen", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dorien@data-intuitive.com", - "github" : "dorien-er", - "linkedin" : "dorien-roosen" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Dries Schaumont", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dries@data-intuitive.com", - "github" : "DriesSchaumont", - "orcid" : "0000-0002-4389-0440", - "linkedin" : "dries-schaumont" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Emma Rousseau", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "emmarousseau", - "linkedin" : "emmarousseau1" - } - } - }, - { - "name" : "Jakub Majercik", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "jakub@data-intuitive.com", - "github" : "jakubmajercik", - "linkedin" : "jakubmajercik" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Bioinformatics Engineer" - } - ] - } - }, - { - "name" : "Kai Waldrant", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "KaiWaldrant", - "orcid" : "0009-0003-8555-1361", - "linkedin" : "kaiwaldrant" - } - } - }, - { - "name" : "Leïla Paquay", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "Leila011", - "linkedin" : "leilapaquay" - } - } - }, - { - "name" : "Sai Nirmayi Yasa", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "sainirmayi", - "linkedin" : "sai-nirmayi-yasa" - } - } - }, - { - "name" : "Theodoro Gasperin Terra Camargo", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "theodorogtc@gmail.com", - "github" : "tgaspe", - "linkedin" : "theodoro-gasperin-terra-camargo" - } - } - }, - { - "name" : "Toni Verbeiren", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "tverbeiren", - "linkedin" : "verbeiren" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist and CEO" - } - ] - } - }, - { - "name" : "Weiwei Schultz", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "linkedin" : "weiwei-schultz" - }, - "organizations" : [ - { - "name" : "Janssen R&D US", - "role" : "Associate Director Data Sciences" - } - ] - } - } - ], "keywords" : [ "bioinformatics", "modules", diff --git a/target/nextflow/bcftools/bcftools_annotate/.config.vsh.yaml b/target/nextflow/bcftools/bcftools_annotate/.config.vsh.yaml index 7133d02e..4765d24c 100644 --- a/target/nextflow/bcftools/bcftools_annotate/.config.vsh.yaml +++ b/target/nextflow/bcftools/bcftools_annotate/.config.vsh.yaml @@ -471,7 +471,7 @@ build_info: output: "target/nextflow/bcftools/bcftools_annotate" executable: "target/nextflow/bcftools/bcftools_annotate/main.nf" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -497,134 +497,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/nextflow/bcftools/bcftools_annotate/main.nf b/target/nextflow/bcftools/bcftools_annotate/main.nf index fa4327d6..e815f0bc 100644 --- a/target/nextflow/bcftools/bcftools_annotate/main.nf +++ b/target/nextflow/bcftools/bcftools_annotate/main.nf @@ -3558,7 +3558,7 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/bcftools/bcftools_annotate", "viash_version" : "0.9.4", - "git_commit" : "736f18e9887893ca830612b48744fe312fe3c696", + "git_commit" : "666507c86de9150bfbdffdb2dbabc1dbde3c3262", "git_remote" : "https://github.com/viash-hub/biobox" }, "package_config" : { @@ -3575,220 +3575,6 @@ meta = [ ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", ".engines[.type == 'docker'].target_tag := 'v0.4.0'" ], - "authors" : [ - { - "name" : "Robrecht Cannoodt", - "roles" : [ - "author", - "maintainer" - ], - "info" : { - "links" : { - "email" : "robrecht@data-intuitive.com", - "github" : "rcannood", - "orcid" : "0000-0003-3641-729X", - "linkedin" : "robrechtcannoodt" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Science Engineer" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Angela Oliveira Pisco", - "roles" : [ - "author" - ], - "info" : { - "role" : "Contributor", - "links" : { - "github" : "aopisco", - "orcid" : "0000-0003-0142-2355", - "linkedin" : "aopisco" - }, - "organizations" : [ - { - "name" : "Insitro", - "href" : "https://insitro.com", - "role" : "Director of Computational Biology" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Dorien Roosen", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dorien@data-intuitive.com", - "github" : "dorien-er", - "linkedin" : "dorien-roosen" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Dries Schaumont", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dries@data-intuitive.com", - "github" : "DriesSchaumont", - "orcid" : "0000-0002-4389-0440", - "linkedin" : "dries-schaumont" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Emma Rousseau", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "emmarousseau", - "linkedin" : "emmarousseau1" - } - } - }, - { - "name" : "Jakub Majercik", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "jakub@data-intuitive.com", - "github" : "jakubmajercik", - "linkedin" : "jakubmajercik" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Bioinformatics Engineer" - } - ] - } - }, - { - "name" : "Kai Waldrant", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "KaiWaldrant", - "orcid" : "0009-0003-8555-1361", - "linkedin" : "kaiwaldrant" - } - } - }, - { - "name" : "Leïla Paquay", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "Leila011", - "linkedin" : "leilapaquay" - } - } - }, - { - "name" : "Sai Nirmayi Yasa", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "sainirmayi", - "linkedin" : "sai-nirmayi-yasa" - } - } - }, - { - "name" : "Theodoro Gasperin Terra Camargo", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "theodorogtc@gmail.com", - "github" : "tgaspe", - "linkedin" : "theodoro-gasperin-terra-camargo" - } - } - }, - { - "name" : "Toni Verbeiren", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "tverbeiren", - "linkedin" : "verbeiren" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist and CEO" - } - ] - } - }, - { - "name" : "Weiwei Schultz", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "linkedin" : "weiwei-schultz" - }, - "organizations" : [ - { - "name" : "Janssen R&D US", - "role" : "Associate Director Data Sciences" - } - ] - } - } - ], "keywords" : [ "bioinformatics", "modules", diff --git a/target/nextflow/bcftools/bcftools_concat/.config.vsh.yaml b/target/nextflow/bcftools/bcftools_concat/.config.vsh.yaml index bec4f7c2..00c08679 100644 --- a/target/nextflow/bcftools/bcftools_concat/.config.vsh.yaml +++ b/target/nextflow/bcftools/bcftools_concat/.config.vsh.yaml @@ -384,7 +384,7 @@ build_info: output: "target/nextflow/bcftools/bcftools_concat" executable: "target/nextflow/bcftools/bcftools_concat/main.nf" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -410,134 +410,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/nextflow/bcftools/bcftools_concat/main.nf b/target/nextflow/bcftools/bcftools_concat/main.nf index bd5e1400..ba1e88fb 100644 --- a/target/nextflow/bcftools/bcftools_concat/main.nf +++ b/target/nextflow/bcftools/bcftools_concat/main.nf @@ -3483,7 +3483,7 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/bcftools/bcftools_concat", "viash_version" : "0.9.4", - "git_commit" : "736f18e9887893ca830612b48744fe312fe3c696", + "git_commit" : "666507c86de9150bfbdffdb2dbabc1dbde3c3262", "git_remote" : "https://github.com/viash-hub/biobox" }, "package_config" : { @@ -3500,220 +3500,6 @@ meta = [ ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", ".engines[.type == 'docker'].target_tag := 'v0.4.0'" ], - "authors" : [ - { - "name" : "Robrecht Cannoodt", - "roles" : [ - "author", - "maintainer" - ], - "info" : { - "links" : { - "email" : "robrecht@data-intuitive.com", - "github" : "rcannood", - "orcid" : "0000-0003-3641-729X", - "linkedin" : "robrechtcannoodt" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Science Engineer" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Angela Oliveira Pisco", - "roles" : [ - "author" - ], - "info" : { - "role" : "Contributor", - "links" : { - "github" : "aopisco", - "orcid" : "0000-0003-0142-2355", - "linkedin" : "aopisco" - }, - "organizations" : [ - { - "name" : "Insitro", - "href" : "https://insitro.com", - "role" : "Director of Computational Biology" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Dorien Roosen", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dorien@data-intuitive.com", - "github" : "dorien-er", - "linkedin" : "dorien-roosen" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Dries Schaumont", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dries@data-intuitive.com", - "github" : "DriesSchaumont", - "orcid" : "0000-0002-4389-0440", - "linkedin" : "dries-schaumont" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Emma Rousseau", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "emmarousseau", - "linkedin" : "emmarousseau1" - } - } - }, - { - "name" : "Jakub Majercik", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "jakub@data-intuitive.com", - "github" : "jakubmajercik", - "linkedin" : "jakubmajercik" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Bioinformatics Engineer" - } - ] - } - }, - { - "name" : "Kai Waldrant", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "KaiWaldrant", - "orcid" : "0009-0003-8555-1361", - "linkedin" : "kaiwaldrant" - } - } - }, - { - "name" : "Leïla Paquay", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "Leila011", - "linkedin" : "leilapaquay" - } - } - }, - { - "name" : "Sai Nirmayi Yasa", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "sainirmayi", - "linkedin" : "sai-nirmayi-yasa" - } - } - }, - { - "name" : "Theodoro Gasperin Terra Camargo", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "theodorogtc@gmail.com", - "github" : "tgaspe", - "linkedin" : "theodoro-gasperin-terra-camargo" - } - } - }, - { - "name" : "Toni Verbeiren", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "tverbeiren", - "linkedin" : "verbeiren" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist and CEO" - } - ] - } - }, - { - "name" : "Weiwei Schultz", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "linkedin" : "weiwei-schultz" - }, - "organizations" : [ - { - "name" : "Janssen R&D US", - "role" : "Associate Director Data Sciences" - } - ] - } - } - ], "keywords" : [ "bioinformatics", "modules", diff --git a/target/nextflow/bcftools/bcftools_norm/.config.vsh.yaml b/target/nextflow/bcftools/bcftools_norm/.config.vsh.yaml index 0c158450..79f9d7dc 100644 --- a/target/nextflow/bcftools/bcftools_norm/.config.vsh.yaml +++ b/target/nextflow/bcftools/bcftools_norm/.config.vsh.yaml @@ -544,7 +544,7 @@ build_info: output: "target/nextflow/bcftools/bcftools_norm" executable: "target/nextflow/bcftools/bcftools_norm/main.nf" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -570,134 +570,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/nextflow/bcftools/bcftools_norm/main.nf b/target/nextflow/bcftools/bcftools_norm/main.nf index c14deb02..01b6c017 100644 --- a/target/nextflow/bcftools/bcftools_norm/main.nf +++ b/target/nextflow/bcftools/bcftools_norm/main.nf @@ -3667,7 +3667,7 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/bcftools/bcftools_norm", "viash_version" : "0.9.4", - "git_commit" : "736f18e9887893ca830612b48744fe312fe3c696", + "git_commit" : "666507c86de9150bfbdffdb2dbabc1dbde3c3262", "git_remote" : "https://github.com/viash-hub/biobox" }, "package_config" : { @@ -3684,220 +3684,6 @@ meta = [ ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", ".engines[.type == 'docker'].target_tag := 'v0.4.0'" ], - "authors" : [ - { - "name" : "Robrecht Cannoodt", - "roles" : [ - "author", - "maintainer" - ], - "info" : { - "links" : { - "email" : "robrecht@data-intuitive.com", - "github" : "rcannood", - "orcid" : "0000-0003-3641-729X", - "linkedin" : "robrechtcannoodt" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Science Engineer" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Angela Oliveira Pisco", - "roles" : [ - "author" - ], - "info" : { - "role" : "Contributor", - "links" : { - "github" : "aopisco", - "orcid" : "0000-0003-0142-2355", - "linkedin" : "aopisco" - }, - "organizations" : [ - { - "name" : "Insitro", - "href" : "https://insitro.com", - "role" : "Director of Computational Biology" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Dorien Roosen", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dorien@data-intuitive.com", - "github" : "dorien-er", - "linkedin" : "dorien-roosen" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Dries Schaumont", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dries@data-intuitive.com", - "github" : "DriesSchaumont", - "orcid" : "0000-0002-4389-0440", - "linkedin" : "dries-schaumont" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Emma Rousseau", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "emmarousseau", - "linkedin" : "emmarousseau1" - } - } - }, - { - "name" : "Jakub Majercik", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "jakub@data-intuitive.com", - "github" : "jakubmajercik", - "linkedin" : "jakubmajercik" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Bioinformatics Engineer" - } - ] - } - }, - { - "name" : "Kai Waldrant", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "KaiWaldrant", - "orcid" : "0009-0003-8555-1361", - "linkedin" : "kaiwaldrant" - } - } - }, - { - "name" : "Leïla Paquay", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "Leila011", - "linkedin" : "leilapaquay" - } - } - }, - { - "name" : "Sai Nirmayi Yasa", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "sainirmayi", - "linkedin" : "sai-nirmayi-yasa" - } - } - }, - { - "name" : "Theodoro Gasperin Terra Camargo", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "theodorogtc@gmail.com", - "github" : "tgaspe", - "linkedin" : "theodoro-gasperin-terra-camargo" - } - } - }, - { - "name" : "Toni Verbeiren", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "tverbeiren", - "linkedin" : "verbeiren" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist and CEO" - } - ] - } - }, - { - "name" : "Weiwei Schultz", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "linkedin" : "weiwei-schultz" - }, - "organizations" : [ - { - "name" : "Janssen R&D US", - "role" : "Associate Director Data Sciences" - } - ] - } - } - ], "keywords" : [ "bioinformatics", "modules", diff --git a/target/nextflow/bcftools/bcftools_sort/.config.vsh.yaml b/target/nextflow/bcftools/bcftools_sort/.config.vsh.yaml index c209ae44..288b390e 100644 --- a/target/nextflow/bcftools/bcftools_sort/.config.vsh.yaml +++ b/target/nextflow/bcftools/bcftools_sort/.config.vsh.yaml @@ -204,7 +204,7 @@ build_info: output: "target/nextflow/bcftools/bcftools_sort" executable: "target/nextflow/bcftools/bcftools_sort/main.nf" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -230,134 +230,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/nextflow/bcftools/bcftools_sort/main.nf b/target/nextflow/bcftools/bcftools_sort/main.nf index dfe217ff..b62d0e09 100644 --- a/target/nextflow/bcftools/bcftools_sort/main.nf +++ b/target/nextflow/bcftools/bcftools_sort/main.nf @@ -3293,7 +3293,7 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/bcftools/bcftools_sort", "viash_version" : "0.9.4", - "git_commit" : "736f18e9887893ca830612b48744fe312fe3c696", + "git_commit" : "666507c86de9150bfbdffdb2dbabc1dbde3c3262", "git_remote" : "https://github.com/viash-hub/biobox" }, "package_config" : { @@ -3310,220 +3310,6 @@ meta = [ ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", ".engines[.type == 'docker'].target_tag := 'v0.4.0'" ], - "authors" : [ - { - "name" : "Robrecht Cannoodt", - "roles" : [ - "author", - "maintainer" - ], - "info" : { - "links" : { - "email" : "robrecht@data-intuitive.com", - "github" : "rcannood", - "orcid" : "0000-0003-3641-729X", - "linkedin" : "robrechtcannoodt" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Science Engineer" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Angela Oliveira Pisco", - "roles" : [ - "author" - ], - "info" : { - "role" : "Contributor", - "links" : { - "github" : "aopisco", - "orcid" : "0000-0003-0142-2355", - "linkedin" : "aopisco" - }, - "organizations" : [ - { - "name" : "Insitro", - "href" : "https://insitro.com", - "role" : "Director of Computational Biology" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Dorien Roosen", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dorien@data-intuitive.com", - "github" : "dorien-er", - "linkedin" : "dorien-roosen" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Dries Schaumont", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dries@data-intuitive.com", - "github" : "DriesSchaumont", - "orcid" : "0000-0002-4389-0440", - "linkedin" : "dries-schaumont" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Emma Rousseau", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "emmarousseau", - "linkedin" : "emmarousseau1" - } - } - }, - { - "name" : "Jakub Majercik", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "jakub@data-intuitive.com", - "github" : "jakubmajercik", - "linkedin" : "jakubmajercik" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Bioinformatics Engineer" - } - ] - } - }, - { - "name" : "Kai Waldrant", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "KaiWaldrant", - "orcid" : "0009-0003-8555-1361", - "linkedin" : "kaiwaldrant" - } - } - }, - { - "name" : "Leïla Paquay", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "Leila011", - "linkedin" : "leilapaquay" - } - } - }, - { - "name" : "Sai Nirmayi Yasa", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "sainirmayi", - "linkedin" : "sai-nirmayi-yasa" - } - } - }, - { - "name" : "Theodoro Gasperin Terra Camargo", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "theodorogtc@gmail.com", - "github" : "tgaspe", - "linkedin" : "theodoro-gasperin-terra-camargo" - } - } - }, - { - "name" : "Toni Verbeiren", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "tverbeiren", - "linkedin" : "verbeiren" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist and CEO" - } - ] - } - }, - { - "name" : "Weiwei Schultz", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "linkedin" : "weiwei-schultz" - }, - "organizations" : [ - { - "name" : "Janssen R&D US", - "role" : "Associate Director Data Sciences" - } - ] - } - } - ], "keywords" : [ "bioinformatics", "modules", diff --git a/target/nextflow/bcftools/bcftools_stats/.config.vsh.yaml b/target/nextflow/bcftools/bcftools_stats/.config.vsh.yaml index 9bba14b2..9a884130 100644 --- a/target/nextflow/bcftools/bcftools_stats/.config.vsh.yaml +++ b/target/nextflow/bcftools/bcftools_stats/.config.vsh.yaml @@ -430,7 +430,7 @@ build_info: output: "target/nextflow/bcftools/bcftools_stats" executable: "target/nextflow/bcftools/bcftools_stats/main.nf" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -456,134 +456,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/nextflow/bcftools/bcftools_stats/main.nf b/target/nextflow/bcftools/bcftools_stats/main.nf index 73e72df2..5cfbe678 100644 --- a/target/nextflow/bcftools/bcftools_stats/main.nf +++ b/target/nextflow/bcftools/bcftools_stats/main.nf @@ -3557,7 +3557,7 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/bcftools/bcftools_stats", "viash_version" : "0.9.4", - "git_commit" : "736f18e9887893ca830612b48744fe312fe3c696", + "git_commit" : "666507c86de9150bfbdffdb2dbabc1dbde3c3262", "git_remote" : "https://github.com/viash-hub/biobox" }, "package_config" : { @@ -3574,220 +3574,6 @@ meta = [ ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", ".engines[.type == 'docker'].target_tag := 'v0.4.0'" ], - "authors" : [ - { - "name" : "Robrecht Cannoodt", - "roles" : [ - "author", - "maintainer" - ], - "info" : { - "links" : { - "email" : "robrecht@data-intuitive.com", - "github" : "rcannood", - "orcid" : "0000-0003-3641-729X", - "linkedin" : "robrechtcannoodt" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Science Engineer" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Angela Oliveira Pisco", - "roles" : [ - "author" - ], - "info" : { - "role" : "Contributor", - "links" : { - "github" : "aopisco", - "orcid" : "0000-0003-0142-2355", - "linkedin" : "aopisco" - }, - "organizations" : [ - { - "name" : "Insitro", - "href" : "https://insitro.com", - "role" : "Director of Computational Biology" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Dorien Roosen", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dorien@data-intuitive.com", - "github" : "dorien-er", - "linkedin" : "dorien-roosen" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Dries Schaumont", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dries@data-intuitive.com", - "github" : "DriesSchaumont", - "orcid" : "0000-0002-4389-0440", - "linkedin" : "dries-schaumont" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Emma Rousseau", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "emmarousseau", - "linkedin" : "emmarousseau1" - } - } - }, - { - "name" : "Jakub Majercik", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "jakub@data-intuitive.com", - "github" : "jakubmajercik", - "linkedin" : "jakubmajercik" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Bioinformatics Engineer" - } - ] - } - }, - { - "name" : "Kai Waldrant", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "KaiWaldrant", - "orcid" : "0009-0003-8555-1361", - "linkedin" : "kaiwaldrant" - } - } - }, - { - "name" : "Leïla Paquay", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "Leila011", - "linkedin" : "leilapaquay" - } - } - }, - { - "name" : "Sai Nirmayi Yasa", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "sainirmayi", - "linkedin" : "sai-nirmayi-yasa" - } - } - }, - { - "name" : "Theodoro Gasperin Terra Camargo", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "theodorogtc@gmail.com", - "github" : "tgaspe", - "linkedin" : "theodoro-gasperin-terra-camargo" - } - } - }, - { - "name" : "Toni Verbeiren", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "tverbeiren", - "linkedin" : "verbeiren" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist and CEO" - } - ] - } - }, - { - "name" : "Weiwei Schultz", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "linkedin" : "weiwei-schultz" - }, - "organizations" : [ - { - "name" : "Janssen R&D US", - "role" : "Associate Director Data Sciences" - } - ] - } - } - ], "keywords" : [ "bioinformatics", "modules", diff --git a/target/nextflow/bcl_convert/.config.vsh.yaml b/target/nextflow/bcl_convert/.config.vsh.yaml index 02a648e0..cefd93a9 100644 --- a/target/nextflow/bcl_convert/.config.vsh.yaml +++ b/target/nextflow/bcl_convert/.config.vsh.yaml @@ -431,7 +431,7 @@ build_info: output: "target/nextflow/bcl_convert" executable: "target/nextflow/bcl_convert/main.nf" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -457,134 +457,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/nextflow/bcl_convert/main.nf b/target/nextflow/bcl_convert/main.nf index 9d79bb28..f5288706 100644 --- a/target/nextflow/bcl_convert/main.nf +++ b/target/nextflow/bcl_convert/main.nf @@ -3571,7 +3571,7 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/bcl_convert", "viash_version" : "0.9.4", - "git_commit" : "736f18e9887893ca830612b48744fe312fe3c696", + "git_commit" : "666507c86de9150bfbdffdb2dbabc1dbde3c3262", "git_remote" : "https://github.com/viash-hub/biobox" }, "package_config" : { @@ -3588,220 +3588,6 @@ meta = [ ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", ".engines[.type == 'docker'].target_tag := 'v0.4.0'" ], - "authors" : [ - { - "name" : "Robrecht Cannoodt", - "roles" : [ - "author", - "maintainer" - ], - "info" : { - "links" : { - "email" : "robrecht@data-intuitive.com", - "github" : "rcannood", - "orcid" : "0000-0003-3641-729X", - "linkedin" : "robrechtcannoodt" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Science Engineer" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Angela Oliveira Pisco", - "roles" : [ - "author" - ], - "info" : { - "role" : "Contributor", - "links" : { - "github" : "aopisco", - "orcid" : "0000-0003-0142-2355", - "linkedin" : "aopisco" - }, - "organizations" : [ - { - "name" : "Insitro", - "href" : "https://insitro.com", - "role" : "Director of Computational Biology" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Dorien Roosen", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dorien@data-intuitive.com", - "github" : "dorien-er", - "linkedin" : "dorien-roosen" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Dries Schaumont", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dries@data-intuitive.com", - "github" : "DriesSchaumont", - "orcid" : "0000-0002-4389-0440", - "linkedin" : "dries-schaumont" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Emma Rousseau", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "emmarousseau", - "linkedin" : "emmarousseau1" - } - } - }, - { - "name" : "Jakub Majercik", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "jakub@data-intuitive.com", - "github" : "jakubmajercik", - "linkedin" : "jakubmajercik" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Bioinformatics Engineer" - } - ] - } - }, - { - "name" : "Kai Waldrant", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "KaiWaldrant", - "orcid" : "0009-0003-8555-1361", - "linkedin" : "kaiwaldrant" - } - } - }, - { - "name" : "Leïla Paquay", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "Leila011", - "linkedin" : "leilapaquay" - } - } - }, - { - "name" : "Sai Nirmayi Yasa", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "sainirmayi", - "linkedin" : "sai-nirmayi-yasa" - } - } - }, - { - "name" : "Theodoro Gasperin Terra Camargo", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "theodorogtc@gmail.com", - "github" : "tgaspe", - "linkedin" : "theodoro-gasperin-terra-camargo" - } - } - }, - { - "name" : "Toni Verbeiren", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "tverbeiren", - "linkedin" : "verbeiren" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist and CEO" - } - ] - } - }, - { - "name" : "Weiwei Schultz", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "linkedin" : "weiwei-schultz" - }, - "organizations" : [ - { - "name" : "Janssen R&D US", - "role" : "Associate Director Data Sciences" - } - ] - } - } - ], "keywords" : [ "bioinformatics", "modules", diff --git a/target/nextflow/bd_rhapsody/bd_rhapsody_make_reference/.config.vsh.yaml b/target/nextflow/bd_rhapsody/bd_rhapsody_make_reference/.config.vsh.yaml index ae5d1004..921ecca2 100644 --- a/target/nextflow/bd_rhapsody/bd_rhapsody_make_reference/.config.vsh.yaml +++ b/target/nextflow/bd_rhapsody/bd_rhapsody_make_reference/.config.vsh.yaml @@ -280,7 +280,7 @@ build_info: output: "target/nextflow/bd_rhapsody/bd_rhapsody_make_reference" executable: "target/nextflow/bd_rhapsody/bd_rhapsody_make_reference/main.nf" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -306,134 +306,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/nextflow/bd_rhapsody/bd_rhapsody_make_reference/main.nf b/target/nextflow/bd_rhapsody/bd_rhapsody_make_reference/main.nf index 7810cd91..ce6a951a 100644 --- a/target/nextflow/bd_rhapsody/bd_rhapsody_make_reference/main.nf +++ b/target/nextflow/bd_rhapsody/bd_rhapsody_make_reference/main.nf @@ -3380,7 +3380,7 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/bd_rhapsody/bd_rhapsody_make_reference", "viash_version" : "0.9.4", - "git_commit" : "736f18e9887893ca830612b48744fe312fe3c696", + "git_commit" : "666507c86de9150bfbdffdb2dbabc1dbde3c3262", "git_remote" : "https://github.com/viash-hub/biobox" }, "package_config" : { @@ -3397,220 +3397,6 @@ meta = [ ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", ".engines[.type == 'docker'].target_tag := 'v0.4.0'" ], - "authors" : [ - { - "name" : "Robrecht Cannoodt", - "roles" : [ - "author", - "maintainer" - ], - "info" : { - "links" : { - "email" : "robrecht@data-intuitive.com", - "github" : "rcannood", - "orcid" : "0000-0003-3641-729X", - "linkedin" : "robrechtcannoodt" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Science Engineer" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Angela Oliveira Pisco", - "roles" : [ - "author" - ], - "info" : { - "role" : "Contributor", - "links" : { - "github" : "aopisco", - "orcid" : "0000-0003-0142-2355", - "linkedin" : "aopisco" - }, - "organizations" : [ - { - "name" : "Insitro", - "href" : "https://insitro.com", - "role" : "Director of Computational Biology" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Dorien Roosen", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dorien@data-intuitive.com", - "github" : "dorien-er", - "linkedin" : "dorien-roosen" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Dries Schaumont", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dries@data-intuitive.com", - "github" : "DriesSchaumont", - "orcid" : "0000-0002-4389-0440", - "linkedin" : "dries-schaumont" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Emma Rousseau", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "emmarousseau", - "linkedin" : "emmarousseau1" - } - } - }, - { - "name" : "Jakub Majercik", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "jakub@data-intuitive.com", - "github" : "jakubmajercik", - "linkedin" : "jakubmajercik" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Bioinformatics Engineer" - } - ] - } - }, - { - "name" : "Kai Waldrant", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "KaiWaldrant", - "orcid" : "0009-0003-8555-1361", - "linkedin" : "kaiwaldrant" - } - } - }, - { - "name" : "Leïla Paquay", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "Leila011", - "linkedin" : "leilapaquay" - } - } - }, - { - "name" : "Sai Nirmayi Yasa", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "sainirmayi", - "linkedin" : "sai-nirmayi-yasa" - } - } - }, - { - "name" : "Theodoro Gasperin Terra Camargo", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "theodorogtc@gmail.com", - "github" : "tgaspe", - "linkedin" : "theodoro-gasperin-terra-camargo" - } - } - }, - { - "name" : "Toni Verbeiren", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "tverbeiren", - "linkedin" : "verbeiren" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist and CEO" - } - ] - } - }, - { - "name" : "Weiwei Schultz", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "linkedin" : "weiwei-schultz" - }, - "organizations" : [ - { - "name" : "Janssen R&D US", - "role" : "Associate Director Data Sciences" - } - ] - } - } - ], "keywords" : [ "bioinformatics", "modules", diff --git a/target/nextflow/bd_rhapsody/bd_rhapsody_sequence_analysis/.config.vsh.yaml b/target/nextflow/bd_rhapsody/bd_rhapsody_sequence_analysis/.config.vsh.yaml index 31636268..ce0f2410 100644 --- a/target/nextflow/bd_rhapsody/bd_rhapsody_sequence_analysis/.config.vsh.yaml +++ b/target/nextflow/bd_rhapsody/bd_rhapsody_sequence_analysis/.config.vsh.yaml @@ -1121,7 +1121,7 @@ build_info: output: "target/nextflow/bd_rhapsody/bd_rhapsody_sequence_analysis" executable: "target/nextflow/bd_rhapsody/bd_rhapsody_sequence_analysis/main.nf" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -1147,134 +1147,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/nextflow/bd_rhapsody/bd_rhapsody_sequence_analysis/main.nf b/target/nextflow/bd_rhapsody/bd_rhapsody_sequence_analysis/main.nf index e653fe02..a45a47c8 100644 --- a/target/nextflow/bd_rhapsody/bd_rhapsody_sequence_analysis/main.nf +++ b/target/nextflow/bd_rhapsody/bd_rhapsody_sequence_analysis/main.nf @@ -4427,7 +4427,7 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/bd_rhapsody/bd_rhapsody_sequence_analysis", "viash_version" : "0.9.4", - "git_commit" : "736f18e9887893ca830612b48744fe312fe3c696", + "git_commit" : "666507c86de9150bfbdffdb2dbabc1dbde3c3262", "git_remote" : "https://github.com/viash-hub/biobox" }, "package_config" : { @@ -4444,220 +4444,6 @@ meta = [ ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", ".engines[.type == 'docker'].target_tag := 'v0.4.0'" ], - "authors" : [ - { - "name" : "Robrecht Cannoodt", - "roles" : [ - "author", - "maintainer" - ], - "info" : { - "links" : { - "email" : "robrecht@data-intuitive.com", - "github" : "rcannood", - "orcid" : "0000-0003-3641-729X", - "linkedin" : "robrechtcannoodt" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Science Engineer" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Angela Oliveira Pisco", - "roles" : [ - "author" - ], - "info" : { - "role" : "Contributor", - "links" : { - "github" : "aopisco", - "orcid" : "0000-0003-0142-2355", - "linkedin" : "aopisco" - }, - "organizations" : [ - { - "name" : "Insitro", - "href" : "https://insitro.com", - "role" : "Director of Computational Biology" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Dorien Roosen", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dorien@data-intuitive.com", - "github" : "dorien-er", - "linkedin" : "dorien-roosen" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Dries Schaumont", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dries@data-intuitive.com", - "github" : "DriesSchaumont", - "orcid" : "0000-0002-4389-0440", - "linkedin" : "dries-schaumont" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Emma Rousseau", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "emmarousseau", - "linkedin" : "emmarousseau1" - } - } - }, - { - "name" : "Jakub Majercik", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "jakub@data-intuitive.com", - "github" : "jakubmajercik", - "linkedin" : "jakubmajercik" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Bioinformatics Engineer" - } - ] - } - }, - { - "name" : "Kai Waldrant", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "KaiWaldrant", - "orcid" : "0009-0003-8555-1361", - "linkedin" : "kaiwaldrant" - } - } - }, - { - "name" : "Leïla Paquay", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "Leila011", - "linkedin" : "leilapaquay" - } - } - }, - { - "name" : "Sai Nirmayi Yasa", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "sainirmayi", - "linkedin" : "sai-nirmayi-yasa" - } - } - }, - { - "name" : "Theodoro Gasperin Terra Camargo", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "theodorogtc@gmail.com", - "github" : "tgaspe", - "linkedin" : "theodoro-gasperin-terra-camargo" - } - } - }, - { - "name" : "Toni Verbeiren", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "tverbeiren", - "linkedin" : "verbeiren" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist and CEO" - } - ] - } - }, - { - "name" : "Weiwei Schultz", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "linkedin" : "weiwei-schultz" - }, - "organizations" : [ - { - "name" : "Janssen R&D US", - "role" : "Associate Director Data Sciences" - } - ] - } - } - ], "keywords" : [ "bioinformatics", "modules", diff --git a/target/nextflow/bedtools/bedtools_annotate/.config.vsh.yaml b/target/nextflow/bedtools/bedtools_annotate/.config.vsh.yaml index 317b4d2e..791f9887 100644 --- a/target/nextflow/bedtools/bedtools_annotate/.config.vsh.yaml +++ b/target/nextflow/bedtools/bedtools_annotate/.config.vsh.yaml @@ -247,7 +247,7 @@ build_info: output: "target/nextflow/bedtools/bedtools_annotate" executable: "target/nextflow/bedtools/bedtools_annotate/main.nf" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -273,134 +273,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/nextflow/bedtools/bedtools_annotate/main.nf b/target/nextflow/bedtools/bedtools_annotate/main.nf index 52f17039..3cc764c7 100644 --- a/target/nextflow/bedtools/bedtools_annotate/main.nf +++ b/target/nextflow/bedtools/bedtools_annotate/main.nf @@ -3322,7 +3322,7 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/bedtools/bedtools_annotate", "viash_version" : "0.9.4", - "git_commit" : "736f18e9887893ca830612b48744fe312fe3c696", + "git_commit" : "666507c86de9150bfbdffdb2dbabc1dbde3c3262", "git_remote" : "https://github.com/viash-hub/biobox" }, "package_config" : { @@ -3339,220 +3339,6 @@ meta = [ ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", ".engines[.type == 'docker'].target_tag := 'v0.4.0'" ], - "authors" : [ - { - "name" : "Robrecht Cannoodt", - "roles" : [ - "author", - "maintainer" - ], - "info" : { - "links" : { - "email" : "robrecht@data-intuitive.com", - "github" : "rcannood", - "orcid" : "0000-0003-3641-729X", - "linkedin" : "robrechtcannoodt" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Science Engineer" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Angela Oliveira Pisco", - "roles" : [ - "author" - ], - "info" : { - "role" : "Contributor", - "links" : { - "github" : "aopisco", - "orcid" : "0000-0003-0142-2355", - "linkedin" : "aopisco" - }, - "organizations" : [ - { - "name" : "Insitro", - "href" : "https://insitro.com", - "role" : "Director of Computational Biology" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Dorien Roosen", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dorien@data-intuitive.com", - "github" : "dorien-er", - "linkedin" : "dorien-roosen" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Dries Schaumont", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dries@data-intuitive.com", - "github" : "DriesSchaumont", - "orcid" : "0000-0002-4389-0440", - "linkedin" : "dries-schaumont" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Emma Rousseau", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "emmarousseau", - "linkedin" : "emmarousseau1" - } - } - }, - { - "name" : "Jakub Majercik", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "jakub@data-intuitive.com", - "github" : "jakubmajercik", - "linkedin" : "jakubmajercik" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Bioinformatics Engineer" - } - ] - } - }, - { - "name" : "Kai Waldrant", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "KaiWaldrant", - "orcid" : "0009-0003-8555-1361", - "linkedin" : "kaiwaldrant" - } - } - }, - { - "name" : "Leïla Paquay", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "Leila011", - "linkedin" : "leilapaquay" - } - } - }, - { - "name" : "Sai Nirmayi Yasa", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "sainirmayi", - "linkedin" : "sai-nirmayi-yasa" - } - } - }, - { - "name" : "Theodoro Gasperin Terra Camargo", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "theodorogtc@gmail.com", - "github" : "tgaspe", - "linkedin" : "theodoro-gasperin-terra-camargo" - } - } - }, - { - "name" : "Toni Verbeiren", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "tverbeiren", - "linkedin" : "verbeiren" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist and CEO" - } - ] - } - }, - { - "name" : "Weiwei Schultz", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "linkedin" : "weiwei-schultz" - }, - "organizations" : [ - { - "name" : "Janssen R&D US", - "role" : "Associate Director Data Sciences" - } - ] - } - } - ], "keywords" : [ "bioinformatics", "modules", diff --git a/target/nextflow/bedtools/bedtools_bamtobed/.config.vsh.yaml b/target/nextflow/bedtools/bedtools_bamtobed/.config.vsh.yaml index 94e1ff2d..e5732991 100644 --- a/target/nextflow/bedtools/bedtools_bamtobed/.config.vsh.yaml +++ b/target/nextflow/bedtools/bedtools_bamtobed/.config.vsh.yaml @@ -266,7 +266,7 @@ build_info: output: "target/nextflow/bedtools/bedtools_bamtobed" executable: "target/nextflow/bedtools/bedtools_bamtobed/main.nf" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -292,134 +292,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/nextflow/bedtools/bedtools_bamtobed/main.nf b/target/nextflow/bedtools/bedtools_bamtobed/main.nf index 4fd6cbbc..d3f9bd07 100644 --- a/target/nextflow/bedtools/bedtools_bamtobed/main.nf +++ b/target/nextflow/bedtools/bedtools_bamtobed/main.nf @@ -3349,7 +3349,7 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/bedtools/bedtools_bamtobed", "viash_version" : "0.9.4", - "git_commit" : "736f18e9887893ca830612b48744fe312fe3c696", + "git_commit" : "666507c86de9150bfbdffdb2dbabc1dbde3c3262", "git_remote" : "https://github.com/viash-hub/biobox" }, "package_config" : { @@ -3366,220 +3366,6 @@ meta = [ ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", ".engines[.type == 'docker'].target_tag := 'v0.4.0'" ], - "authors" : [ - { - "name" : "Robrecht Cannoodt", - "roles" : [ - "author", - "maintainer" - ], - "info" : { - "links" : { - "email" : "robrecht@data-intuitive.com", - "github" : "rcannood", - "orcid" : "0000-0003-3641-729X", - "linkedin" : "robrechtcannoodt" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Science Engineer" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Angela Oliveira Pisco", - "roles" : [ - "author" - ], - "info" : { - "role" : "Contributor", - "links" : { - "github" : "aopisco", - "orcid" : "0000-0003-0142-2355", - "linkedin" : "aopisco" - }, - "organizations" : [ - { - "name" : "Insitro", - "href" : "https://insitro.com", - "role" : "Director of Computational Biology" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Dorien Roosen", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dorien@data-intuitive.com", - "github" : "dorien-er", - "linkedin" : "dorien-roosen" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Dries Schaumont", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dries@data-intuitive.com", - "github" : "DriesSchaumont", - "orcid" : "0000-0002-4389-0440", - "linkedin" : "dries-schaumont" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Emma Rousseau", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "emmarousseau", - "linkedin" : "emmarousseau1" - } - } - }, - { - "name" : "Jakub Majercik", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "jakub@data-intuitive.com", - "github" : "jakubmajercik", - "linkedin" : "jakubmajercik" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Bioinformatics Engineer" - } - ] - } - }, - { - "name" : "Kai Waldrant", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "KaiWaldrant", - "orcid" : "0009-0003-8555-1361", - "linkedin" : "kaiwaldrant" - } - } - }, - { - "name" : "Leïla Paquay", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "Leila011", - "linkedin" : "leilapaquay" - } - } - }, - { - "name" : "Sai Nirmayi Yasa", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "sainirmayi", - "linkedin" : "sai-nirmayi-yasa" - } - } - }, - { - "name" : "Theodoro Gasperin Terra Camargo", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "theodorogtc@gmail.com", - "github" : "tgaspe", - "linkedin" : "theodoro-gasperin-terra-camargo" - } - } - }, - { - "name" : "Toni Verbeiren", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "tverbeiren", - "linkedin" : "verbeiren" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist and CEO" - } - ] - } - }, - { - "name" : "Weiwei Schultz", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "linkedin" : "weiwei-schultz" - }, - "organizations" : [ - { - "name" : "Janssen R&D US", - "role" : "Associate Director Data Sciences" - } - ] - } - } - ], "keywords" : [ "bioinformatics", "modules", diff --git a/target/nextflow/bedtools/bedtools_bamtofastq/.config.vsh.yaml b/target/nextflow/bedtools/bedtools_bamtofastq/.config.vsh.yaml index 85159ab4..79d7fba4 100644 --- a/target/nextflow/bedtools/bedtools_bamtofastq/.config.vsh.yaml +++ b/target/nextflow/bedtools/bedtools_bamtofastq/.config.vsh.yaml @@ -211,7 +211,7 @@ build_info: output: "target/nextflow/bedtools/bedtools_bamtofastq" executable: "target/nextflow/bedtools/bedtools_bamtofastq/main.nf" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -237,134 +237,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/nextflow/bedtools/bedtools_bamtofastq/main.nf b/target/nextflow/bedtools/bedtools_bamtofastq/main.nf index fc958ca3..13c7001f 100644 --- a/target/nextflow/bedtools/bedtools_bamtofastq/main.nf +++ b/target/nextflow/bedtools/bedtools_bamtofastq/main.nf @@ -3301,7 +3301,7 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/bedtools/bedtools_bamtofastq", "viash_version" : "0.9.4", - "git_commit" : "736f18e9887893ca830612b48744fe312fe3c696", + "git_commit" : "666507c86de9150bfbdffdb2dbabc1dbde3c3262", "git_remote" : "https://github.com/viash-hub/biobox" }, "package_config" : { @@ -3318,220 +3318,6 @@ meta = [ ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", ".engines[.type == 'docker'].target_tag := 'v0.4.0'" ], - "authors" : [ - { - "name" : "Robrecht Cannoodt", - "roles" : [ - "author", - "maintainer" - ], - "info" : { - "links" : { - "email" : "robrecht@data-intuitive.com", - "github" : "rcannood", - "orcid" : "0000-0003-3641-729X", - "linkedin" : "robrechtcannoodt" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Science Engineer" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Angela Oliveira Pisco", - "roles" : [ - "author" - ], - "info" : { - "role" : "Contributor", - "links" : { - "github" : "aopisco", - "orcid" : "0000-0003-0142-2355", - "linkedin" : "aopisco" - }, - "organizations" : [ - { - "name" : "Insitro", - "href" : "https://insitro.com", - "role" : "Director of Computational Biology" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Dorien Roosen", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dorien@data-intuitive.com", - "github" : "dorien-er", - "linkedin" : "dorien-roosen" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Dries Schaumont", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dries@data-intuitive.com", - "github" : "DriesSchaumont", - "orcid" : "0000-0002-4389-0440", - "linkedin" : "dries-schaumont" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Emma Rousseau", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "emmarousseau", - "linkedin" : "emmarousseau1" - } - } - }, - { - "name" : "Jakub Majercik", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "jakub@data-intuitive.com", - "github" : "jakubmajercik", - "linkedin" : "jakubmajercik" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Bioinformatics Engineer" - } - ] - } - }, - { - "name" : "Kai Waldrant", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "KaiWaldrant", - "orcid" : "0009-0003-8555-1361", - "linkedin" : "kaiwaldrant" - } - } - }, - { - "name" : "Leïla Paquay", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "Leila011", - "linkedin" : "leilapaquay" - } - } - }, - { - "name" : "Sai Nirmayi Yasa", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "sainirmayi", - "linkedin" : "sai-nirmayi-yasa" - } - } - }, - { - "name" : "Theodoro Gasperin Terra Camargo", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "theodorogtc@gmail.com", - "github" : "tgaspe", - "linkedin" : "theodoro-gasperin-terra-camargo" - } - } - }, - { - "name" : "Toni Verbeiren", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "tverbeiren", - "linkedin" : "verbeiren" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist and CEO" - } - ] - } - }, - { - "name" : "Weiwei Schultz", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "linkedin" : "weiwei-schultz" - }, - "organizations" : [ - { - "name" : "Janssen R&D US", - "role" : "Associate Director Data Sciences" - } - ] - } - } - ], "keywords" : [ "bioinformatics", "modules", diff --git a/target/nextflow/bedtools/bedtools_bed12tobed6/.config.vsh.yaml b/target/nextflow/bedtools/bedtools_bed12tobed6/.config.vsh.yaml index 308892e2..e357e021 100644 --- a/target/nextflow/bedtools/bedtools_bed12tobed6/.config.vsh.yaml +++ b/target/nextflow/bedtools/bedtools_bed12tobed6/.config.vsh.yaml @@ -199,7 +199,7 @@ build_info: output: "target/nextflow/bedtools/bedtools_bed12tobed6" executable: "target/nextflow/bedtools/bedtools_bed12tobed6/main.nf" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -225,134 +225,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/nextflow/bedtools/bedtools_bed12tobed6/main.nf b/target/nextflow/bedtools/bedtools_bed12tobed6/main.nf index 32532460..34889d02 100644 --- a/target/nextflow/bedtools/bedtools_bed12tobed6/main.nf +++ b/target/nextflow/bedtools/bedtools_bed12tobed6/main.nf @@ -3287,7 +3287,7 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/bedtools/bedtools_bed12tobed6", "viash_version" : "0.9.4", - "git_commit" : "736f18e9887893ca830612b48744fe312fe3c696", + "git_commit" : "666507c86de9150bfbdffdb2dbabc1dbde3c3262", "git_remote" : "https://github.com/viash-hub/biobox" }, "package_config" : { @@ -3304,220 +3304,6 @@ meta = [ ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", ".engines[.type == 'docker'].target_tag := 'v0.4.0'" ], - "authors" : [ - { - "name" : "Robrecht Cannoodt", - "roles" : [ - "author", - "maintainer" - ], - "info" : { - "links" : { - "email" : "robrecht@data-intuitive.com", - "github" : "rcannood", - "orcid" : "0000-0003-3641-729X", - "linkedin" : "robrechtcannoodt" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Science Engineer" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Angela Oliveira Pisco", - "roles" : [ - "author" - ], - "info" : { - "role" : "Contributor", - "links" : { - "github" : "aopisco", - "orcid" : "0000-0003-0142-2355", - "linkedin" : "aopisco" - }, - "organizations" : [ - { - "name" : "Insitro", - "href" : "https://insitro.com", - "role" : "Director of Computational Biology" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Dorien Roosen", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dorien@data-intuitive.com", - "github" : "dorien-er", - "linkedin" : "dorien-roosen" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Dries Schaumont", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dries@data-intuitive.com", - "github" : "DriesSchaumont", - "orcid" : "0000-0002-4389-0440", - "linkedin" : "dries-schaumont" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Emma Rousseau", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "emmarousseau", - "linkedin" : "emmarousseau1" - } - } - }, - { - "name" : "Jakub Majercik", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "jakub@data-intuitive.com", - "github" : "jakubmajercik", - "linkedin" : "jakubmajercik" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Bioinformatics Engineer" - } - ] - } - }, - { - "name" : "Kai Waldrant", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "KaiWaldrant", - "orcid" : "0009-0003-8555-1361", - "linkedin" : "kaiwaldrant" - } - } - }, - { - "name" : "Leïla Paquay", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "Leila011", - "linkedin" : "leilapaquay" - } - } - }, - { - "name" : "Sai Nirmayi Yasa", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "sainirmayi", - "linkedin" : "sai-nirmayi-yasa" - } - } - }, - { - "name" : "Theodoro Gasperin Terra Camargo", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "theodorogtc@gmail.com", - "github" : "tgaspe", - "linkedin" : "theodoro-gasperin-terra-camargo" - } - } - }, - { - "name" : "Toni Verbeiren", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "tverbeiren", - "linkedin" : "verbeiren" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist and CEO" - } - ] - } - }, - { - "name" : "Weiwei Schultz", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "linkedin" : "weiwei-schultz" - }, - "organizations" : [ - { - "name" : "Janssen R&D US", - "role" : "Associate Director Data Sciences" - } - ] - } - } - ], "keywords" : [ "bioinformatics", "modules", diff --git a/target/nextflow/bedtools/bedtools_bedpetobam/.config.vsh.yaml b/target/nextflow/bedtools/bedtools_bedpetobam/.config.vsh.yaml index 26e23ee5..22c104e4 100644 --- a/target/nextflow/bedtools/bedtools_bedpetobam/.config.vsh.yaml +++ b/target/nextflow/bedtools/bedtools_bedpetobam/.config.vsh.yaml @@ -219,7 +219,7 @@ build_info: output: "target/nextflow/bedtools/bedtools_bedpetobam" executable: "target/nextflow/bedtools/bedtools_bedpetobam/main.nf" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -245,134 +245,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/nextflow/bedtools/bedtools_bedpetobam/main.nf b/target/nextflow/bedtools/bedtools_bedpetobam/main.nf index 8e99f855..74ce4975 100644 --- a/target/nextflow/bedtools/bedtools_bedpetobam/main.nf +++ b/target/nextflow/bedtools/bedtools_bedpetobam/main.nf @@ -3302,7 +3302,7 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/bedtools/bedtools_bedpetobam", "viash_version" : "0.9.4", - "git_commit" : "736f18e9887893ca830612b48744fe312fe3c696", + "git_commit" : "666507c86de9150bfbdffdb2dbabc1dbde3c3262", "git_remote" : "https://github.com/viash-hub/biobox" }, "package_config" : { @@ -3319,220 +3319,6 @@ meta = [ ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", ".engines[.type == 'docker'].target_tag := 'v0.4.0'" ], - "authors" : [ - { - "name" : "Robrecht Cannoodt", - "roles" : [ - "author", - "maintainer" - ], - "info" : { - "links" : { - "email" : "robrecht@data-intuitive.com", - "github" : "rcannood", - "orcid" : "0000-0003-3641-729X", - "linkedin" : "robrechtcannoodt" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Science Engineer" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Angela Oliveira Pisco", - "roles" : [ - "author" - ], - "info" : { - "role" : "Contributor", - "links" : { - "github" : "aopisco", - "orcid" : "0000-0003-0142-2355", - "linkedin" : "aopisco" - }, - "organizations" : [ - { - "name" : "Insitro", - "href" : "https://insitro.com", - "role" : "Director of Computational Biology" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Dorien Roosen", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dorien@data-intuitive.com", - "github" : "dorien-er", - "linkedin" : "dorien-roosen" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Dries Schaumont", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dries@data-intuitive.com", - "github" : "DriesSchaumont", - "orcid" : "0000-0002-4389-0440", - "linkedin" : "dries-schaumont" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Emma Rousseau", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "emmarousseau", - "linkedin" : "emmarousseau1" - } - } - }, - { - "name" : "Jakub Majercik", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "jakub@data-intuitive.com", - "github" : "jakubmajercik", - "linkedin" : "jakubmajercik" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Bioinformatics Engineer" - } - ] - } - }, - { - "name" : "Kai Waldrant", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "KaiWaldrant", - "orcid" : "0009-0003-8555-1361", - "linkedin" : "kaiwaldrant" - } - } - }, - { - "name" : "Leïla Paquay", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "Leila011", - "linkedin" : "leilapaquay" - } - } - }, - { - "name" : "Sai Nirmayi Yasa", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "sainirmayi", - "linkedin" : "sai-nirmayi-yasa" - } - } - }, - { - "name" : "Theodoro Gasperin Terra Camargo", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "theodorogtc@gmail.com", - "github" : "tgaspe", - "linkedin" : "theodoro-gasperin-terra-camargo" - } - } - }, - { - "name" : "Toni Verbeiren", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "tverbeiren", - "linkedin" : "verbeiren" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist and CEO" - } - ] - } - }, - { - "name" : "Weiwei Schultz", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "linkedin" : "weiwei-schultz" - }, - "organizations" : [ - { - "name" : "Janssen R&D US", - "role" : "Associate Director Data Sciences" - } - ] - } - } - ], "keywords" : [ "bioinformatics", "modules", diff --git a/target/nextflow/bedtools/bedtools_bedtobam/.config.vsh.yaml b/target/nextflow/bedtools/bedtools_bedtobam/.config.vsh.yaml index 145d50f9..82e19e94 100644 --- a/target/nextflow/bedtools/bedtools_bedtobam/.config.vsh.yaml +++ b/target/nextflow/bedtools/bedtools_bedtobam/.config.vsh.yaml @@ -235,7 +235,7 @@ build_info: output: "target/nextflow/bedtools/bedtools_bedtobam" executable: "target/nextflow/bedtools/bedtools_bedtobam/main.nf" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -261,134 +261,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/nextflow/bedtools/bedtools_bedtobam/main.nf b/target/nextflow/bedtools/bedtools_bedtobam/main.nf index bcbd9fa2..14f6dbef 100644 --- a/target/nextflow/bedtools/bedtools_bedtobam/main.nf +++ b/target/nextflow/bedtools/bedtools_bedtobam/main.nf @@ -3329,7 +3329,7 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/bedtools/bedtools_bedtobam", "viash_version" : "0.9.4", - "git_commit" : "736f18e9887893ca830612b48744fe312fe3c696", + "git_commit" : "666507c86de9150bfbdffdb2dbabc1dbde3c3262", "git_remote" : "https://github.com/viash-hub/biobox" }, "package_config" : { @@ -3346,220 +3346,6 @@ meta = [ ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", ".engines[.type == 'docker'].target_tag := 'v0.4.0'" ], - "authors" : [ - { - "name" : "Robrecht Cannoodt", - "roles" : [ - "author", - "maintainer" - ], - "info" : { - "links" : { - "email" : "robrecht@data-intuitive.com", - "github" : "rcannood", - "orcid" : "0000-0003-3641-729X", - "linkedin" : "robrechtcannoodt" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Science Engineer" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Angela Oliveira Pisco", - "roles" : [ - "author" - ], - "info" : { - "role" : "Contributor", - "links" : { - "github" : "aopisco", - "orcid" : "0000-0003-0142-2355", - "linkedin" : "aopisco" - }, - "organizations" : [ - { - "name" : "Insitro", - "href" : "https://insitro.com", - "role" : "Director of Computational Biology" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Dorien Roosen", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dorien@data-intuitive.com", - "github" : "dorien-er", - "linkedin" : "dorien-roosen" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Dries Schaumont", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dries@data-intuitive.com", - "github" : "DriesSchaumont", - "orcid" : "0000-0002-4389-0440", - "linkedin" : "dries-schaumont" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Emma Rousseau", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "emmarousseau", - "linkedin" : "emmarousseau1" - } - } - }, - { - "name" : "Jakub Majercik", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "jakub@data-intuitive.com", - "github" : "jakubmajercik", - "linkedin" : "jakubmajercik" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Bioinformatics Engineer" - } - ] - } - }, - { - "name" : "Kai Waldrant", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "KaiWaldrant", - "orcid" : "0009-0003-8555-1361", - "linkedin" : "kaiwaldrant" - } - } - }, - { - "name" : "Leïla Paquay", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "Leila011", - "linkedin" : "leilapaquay" - } - } - }, - { - "name" : "Sai Nirmayi Yasa", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "sainirmayi", - "linkedin" : "sai-nirmayi-yasa" - } - } - }, - { - "name" : "Theodoro Gasperin Terra Camargo", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "theodorogtc@gmail.com", - "github" : "tgaspe", - "linkedin" : "theodoro-gasperin-terra-camargo" - } - } - }, - { - "name" : "Toni Verbeiren", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "tverbeiren", - "linkedin" : "verbeiren" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist and CEO" - } - ] - } - }, - { - "name" : "Weiwei Schultz", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "linkedin" : "weiwei-schultz" - }, - "organizations" : [ - { - "name" : "Janssen R&D US", - "role" : "Associate Director Data Sciences" - } - ] - } - } - ], "keywords" : [ "bioinformatics", "modules", diff --git a/target/nextflow/bedtools/bedtools_closest/.config.vsh.yaml b/target/nextflow/bedtools/bedtools_closest/.config.vsh.yaml index 09cdad92..ebece7e2 100644 --- a/target/nextflow/bedtools/bedtools_closest/.config.vsh.yaml +++ b/target/nextflow/bedtools/bedtools_closest/.config.vsh.yaml @@ -341,7 +341,7 @@ build_info: output: "target/nextflow/bedtools/bedtools_closest" executable: "target/nextflow/bedtools/bedtools_closest/main.nf" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -367,134 +367,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/nextflow/bedtools/bedtools_closest/main.nf b/target/nextflow/bedtools/bedtools_closest/main.nf index e2f47151..d67d842e 100644 --- a/target/nextflow/bedtools/bedtools_closest/main.nf +++ b/target/nextflow/bedtools/bedtools_closest/main.nf @@ -3435,7 +3435,7 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/bedtools/bedtools_closest", "viash_version" : "0.9.4", - "git_commit" : "736f18e9887893ca830612b48744fe312fe3c696", + "git_commit" : "666507c86de9150bfbdffdb2dbabc1dbde3c3262", "git_remote" : "https://github.com/viash-hub/biobox" }, "package_config" : { @@ -3452,220 +3452,6 @@ meta = [ ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", ".engines[.type == 'docker'].target_tag := 'v0.4.0'" ], - "authors" : [ - { - "name" : "Robrecht Cannoodt", - "roles" : [ - "author", - "maintainer" - ], - "info" : { - "links" : { - "email" : "robrecht@data-intuitive.com", - "github" : "rcannood", - "orcid" : "0000-0003-3641-729X", - "linkedin" : "robrechtcannoodt" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Science Engineer" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Angela Oliveira Pisco", - "roles" : [ - "author" - ], - "info" : { - "role" : "Contributor", - "links" : { - "github" : "aopisco", - "orcid" : "0000-0003-0142-2355", - "linkedin" : "aopisco" - }, - "organizations" : [ - { - "name" : "Insitro", - "href" : "https://insitro.com", - "role" : "Director of Computational Biology" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Dorien Roosen", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dorien@data-intuitive.com", - "github" : "dorien-er", - "linkedin" : "dorien-roosen" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Dries Schaumont", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dries@data-intuitive.com", - "github" : "DriesSchaumont", - "orcid" : "0000-0002-4389-0440", - "linkedin" : "dries-schaumont" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Emma Rousseau", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "emmarousseau", - "linkedin" : "emmarousseau1" - } - } - }, - { - "name" : "Jakub Majercik", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "jakub@data-intuitive.com", - "github" : "jakubmajercik", - "linkedin" : "jakubmajercik" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Bioinformatics Engineer" - } - ] - } - }, - { - "name" : "Kai Waldrant", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "KaiWaldrant", - "orcid" : "0009-0003-8555-1361", - "linkedin" : "kaiwaldrant" - } - } - }, - { - "name" : "Leïla Paquay", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "Leila011", - "linkedin" : "leilapaquay" - } - } - }, - { - "name" : "Sai Nirmayi Yasa", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "sainirmayi", - "linkedin" : "sai-nirmayi-yasa" - } - } - }, - { - "name" : "Theodoro Gasperin Terra Camargo", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "theodorogtc@gmail.com", - "github" : "tgaspe", - "linkedin" : "theodoro-gasperin-terra-camargo" - } - } - }, - { - "name" : "Toni Verbeiren", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "tverbeiren", - "linkedin" : "verbeiren" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist and CEO" - } - ] - } - }, - { - "name" : "Weiwei Schultz", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "linkedin" : "weiwei-schultz" - }, - "organizations" : [ - { - "name" : "Janssen R&D US", - "role" : "Associate Director Data Sciences" - } - ] - } - } - ], "keywords" : [ "bioinformatics", "modules", diff --git a/target/nextflow/bedtools/bedtools_cluster/.config.vsh.yaml b/target/nextflow/bedtools/bedtools_cluster/.config.vsh.yaml index 9876ed54..c4c5960b 100644 --- a/target/nextflow/bedtools/bedtools_cluster/.config.vsh.yaml +++ b/target/nextflow/bedtools/bedtools_cluster/.config.vsh.yaml @@ -208,7 +208,7 @@ build_info: output: "target/nextflow/bedtools/bedtools_cluster" executable: "target/nextflow/bedtools/bedtools_cluster/main.nf" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -234,134 +234,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/nextflow/bedtools/bedtools_cluster/main.nf b/target/nextflow/bedtools/bedtools_cluster/main.nf index 757ba1aa..4fd384db 100644 --- a/target/nextflow/bedtools/bedtools_cluster/main.nf +++ b/target/nextflow/bedtools/bedtools_cluster/main.nf @@ -3291,7 +3291,7 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/bedtools/bedtools_cluster", "viash_version" : "0.9.4", - "git_commit" : "736f18e9887893ca830612b48744fe312fe3c696", + "git_commit" : "666507c86de9150bfbdffdb2dbabc1dbde3c3262", "git_remote" : "https://github.com/viash-hub/biobox" }, "package_config" : { @@ -3308,220 +3308,6 @@ meta = [ ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", ".engines[.type == 'docker'].target_tag := 'v0.4.0'" ], - "authors" : [ - { - "name" : "Robrecht Cannoodt", - "roles" : [ - "author", - "maintainer" - ], - "info" : { - "links" : { - "email" : "robrecht@data-intuitive.com", - "github" : "rcannood", - "orcid" : "0000-0003-3641-729X", - "linkedin" : "robrechtcannoodt" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Science Engineer" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Angela Oliveira Pisco", - "roles" : [ - "author" - ], - "info" : { - "role" : "Contributor", - "links" : { - "github" : "aopisco", - "orcid" : "0000-0003-0142-2355", - "linkedin" : "aopisco" - }, - "organizations" : [ - { - "name" : "Insitro", - "href" : "https://insitro.com", - "role" : "Director of Computational Biology" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Dorien Roosen", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dorien@data-intuitive.com", - "github" : "dorien-er", - "linkedin" : "dorien-roosen" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Dries Schaumont", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dries@data-intuitive.com", - "github" : "DriesSchaumont", - "orcid" : "0000-0002-4389-0440", - "linkedin" : "dries-schaumont" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Emma Rousseau", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "emmarousseau", - "linkedin" : "emmarousseau1" - } - } - }, - { - "name" : "Jakub Majercik", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "jakub@data-intuitive.com", - "github" : "jakubmajercik", - "linkedin" : "jakubmajercik" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Bioinformatics Engineer" - } - ] - } - }, - { - "name" : "Kai Waldrant", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "KaiWaldrant", - "orcid" : "0009-0003-8555-1361", - "linkedin" : "kaiwaldrant" - } - } - }, - { - "name" : "Leïla Paquay", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "Leila011", - "linkedin" : "leilapaquay" - } - } - }, - { - "name" : "Sai Nirmayi Yasa", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "sainirmayi", - "linkedin" : "sai-nirmayi-yasa" - } - } - }, - { - "name" : "Theodoro Gasperin Terra Camargo", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "theodorogtc@gmail.com", - "github" : "tgaspe", - "linkedin" : "theodoro-gasperin-terra-camargo" - } - } - }, - { - "name" : "Toni Verbeiren", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "tverbeiren", - "linkedin" : "verbeiren" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist and CEO" - } - ] - } - }, - { - "name" : "Weiwei Schultz", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "linkedin" : "weiwei-schultz" - }, - "organizations" : [ - { - "name" : "Janssen R&D US", - "role" : "Associate Director Data Sciences" - } - ] - } - } - ], "keywords" : [ "bioinformatics", "modules", diff --git a/target/nextflow/bedtools/bedtools_complement/.config.vsh.yaml b/target/nextflow/bedtools/bedtools_complement/.config.vsh.yaml index e17f66c4..cb607026 100644 --- a/target/nextflow/bedtools/bedtools_complement/.config.vsh.yaml +++ b/target/nextflow/bedtools/bedtools_complement/.config.vsh.yaml @@ -209,7 +209,7 @@ build_info: output: "target/nextflow/bedtools/bedtools_complement" executable: "target/nextflow/bedtools/bedtools_complement/main.nf" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -235,134 +235,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/nextflow/bedtools/bedtools_complement/main.nf b/target/nextflow/bedtools/bedtools_complement/main.nf index 24970cc3..2b98bfed 100644 --- a/target/nextflow/bedtools/bedtools_complement/main.nf +++ b/target/nextflow/bedtools/bedtools_complement/main.nf @@ -3290,7 +3290,7 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/bedtools/bedtools_complement", "viash_version" : "0.9.4", - "git_commit" : "736f18e9887893ca830612b48744fe312fe3c696", + "git_commit" : "666507c86de9150bfbdffdb2dbabc1dbde3c3262", "git_remote" : "https://github.com/viash-hub/biobox" }, "package_config" : { @@ -3307,220 +3307,6 @@ meta = [ ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", ".engines[.type == 'docker'].target_tag := 'v0.4.0'" ], - "authors" : [ - { - "name" : "Robrecht Cannoodt", - "roles" : [ - "author", - "maintainer" - ], - "info" : { - "links" : { - "email" : "robrecht@data-intuitive.com", - "github" : "rcannood", - "orcid" : "0000-0003-3641-729X", - "linkedin" : "robrechtcannoodt" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Science Engineer" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Angela Oliveira Pisco", - "roles" : [ - "author" - ], - "info" : { - "role" : "Contributor", - "links" : { - "github" : "aopisco", - "orcid" : "0000-0003-0142-2355", - "linkedin" : "aopisco" - }, - "organizations" : [ - { - "name" : "Insitro", - "href" : "https://insitro.com", - "role" : "Director of Computational Biology" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Dorien Roosen", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dorien@data-intuitive.com", - "github" : "dorien-er", - "linkedin" : "dorien-roosen" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Dries Schaumont", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dries@data-intuitive.com", - "github" : "DriesSchaumont", - "orcid" : "0000-0002-4389-0440", - "linkedin" : "dries-schaumont" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Emma Rousseau", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "emmarousseau", - "linkedin" : "emmarousseau1" - } - } - }, - { - "name" : "Jakub Majercik", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "jakub@data-intuitive.com", - "github" : "jakubmajercik", - "linkedin" : "jakubmajercik" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Bioinformatics Engineer" - } - ] - } - }, - { - "name" : "Kai Waldrant", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "KaiWaldrant", - "orcid" : "0009-0003-8555-1361", - "linkedin" : "kaiwaldrant" - } - } - }, - { - "name" : "Leïla Paquay", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "Leila011", - "linkedin" : "leilapaquay" - } - } - }, - { - "name" : "Sai Nirmayi Yasa", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "sainirmayi", - "linkedin" : "sai-nirmayi-yasa" - } - } - }, - { - "name" : "Theodoro Gasperin Terra Camargo", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "theodorogtc@gmail.com", - "github" : "tgaspe", - "linkedin" : "theodoro-gasperin-terra-camargo" - } - } - }, - { - "name" : "Toni Verbeiren", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "tverbeiren", - "linkedin" : "verbeiren" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist and CEO" - } - ] - } - }, - { - "name" : "Weiwei Schultz", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "linkedin" : "weiwei-schultz" - }, - "organizations" : [ - { - "name" : "Janssen R&D US", - "role" : "Associate Director Data Sciences" - } - ] - } - } - ], "keywords" : [ "bioinformatics", "modules", diff --git a/target/nextflow/bedtools/bedtools_coverage/.config.vsh.yaml b/target/nextflow/bedtools/bedtools_coverage/.config.vsh.yaml index 40712d5b..9c1625c9 100644 --- a/target/nextflow/bedtools/bedtools_coverage/.config.vsh.yaml +++ b/target/nextflow/bedtools/bedtools_coverage/.config.vsh.yaml @@ -362,7 +362,7 @@ build_info: output: "target/nextflow/bedtools/bedtools_coverage" executable: "target/nextflow/bedtools/bedtools_coverage/main.nf" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -388,134 +388,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/nextflow/bedtools/bedtools_coverage/main.nf b/target/nextflow/bedtools/bedtools_coverage/main.nf index 93482662..0589a58f 100644 --- a/target/nextflow/bedtools/bedtools_coverage/main.nf +++ b/target/nextflow/bedtools/bedtools_coverage/main.nf @@ -3458,7 +3458,7 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/bedtools/bedtools_coverage", "viash_version" : "0.9.4", - "git_commit" : "736f18e9887893ca830612b48744fe312fe3c696", + "git_commit" : "666507c86de9150bfbdffdb2dbabc1dbde3c3262", "git_remote" : "https://github.com/viash-hub/biobox" }, "package_config" : { @@ -3475,220 +3475,6 @@ meta = [ ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", ".engines[.type == 'docker'].target_tag := 'v0.4.0'" ], - "authors" : [ - { - "name" : "Robrecht Cannoodt", - "roles" : [ - "author", - "maintainer" - ], - "info" : { - "links" : { - "email" : "robrecht@data-intuitive.com", - "github" : "rcannood", - "orcid" : "0000-0003-3641-729X", - "linkedin" : "robrechtcannoodt" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Science Engineer" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Angela Oliveira Pisco", - "roles" : [ - "author" - ], - "info" : { - "role" : "Contributor", - "links" : { - "github" : "aopisco", - "orcid" : "0000-0003-0142-2355", - "linkedin" : "aopisco" - }, - "organizations" : [ - { - "name" : "Insitro", - "href" : "https://insitro.com", - "role" : "Director of Computational Biology" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Dorien Roosen", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dorien@data-intuitive.com", - "github" : "dorien-er", - "linkedin" : "dorien-roosen" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Dries Schaumont", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dries@data-intuitive.com", - "github" : "DriesSchaumont", - "orcid" : "0000-0002-4389-0440", - "linkedin" : "dries-schaumont" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Emma Rousseau", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "emmarousseau", - "linkedin" : "emmarousseau1" - } - } - }, - { - "name" : "Jakub Majercik", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "jakub@data-intuitive.com", - "github" : "jakubmajercik", - "linkedin" : "jakubmajercik" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Bioinformatics Engineer" - } - ] - } - }, - { - "name" : "Kai Waldrant", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "KaiWaldrant", - "orcid" : "0009-0003-8555-1361", - "linkedin" : "kaiwaldrant" - } - } - }, - { - "name" : "Leïla Paquay", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "Leila011", - "linkedin" : "leilapaquay" - } - } - }, - { - "name" : "Sai Nirmayi Yasa", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "sainirmayi", - "linkedin" : "sai-nirmayi-yasa" - } - } - }, - { - "name" : "Theodoro Gasperin Terra Camargo", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "theodorogtc@gmail.com", - "github" : "tgaspe", - "linkedin" : "theodoro-gasperin-terra-camargo" - } - } - }, - { - "name" : "Toni Verbeiren", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "tverbeiren", - "linkedin" : "verbeiren" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist and CEO" - } - ] - } - }, - { - "name" : "Weiwei Schultz", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "linkedin" : "weiwei-schultz" - }, - "organizations" : [ - { - "name" : "Janssen R&D US", - "role" : "Associate Director Data Sciences" - } - ] - } - } - ], "keywords" : [ "bioinformatics", "modules", diff --git a/target/nextflow/bedtools/bedtools_expand/.config.vsh.yaml b/target/nextflow/bedtools/bedtools_expand/.config.vsh.yaml index 1414668e..4360a335 100644 --- a/target/nextflow/bedtools/bedtools_expand/.config.vsh.yaml +++ b/target/nextflow/bedtools/bedtools_expand/.config.vsh.yaml @@ -194,7 +194,7 @@ build_info: output: "target/nextflow/bedtools/bedtools_expand" executable: "target/nextflow/bedtools/bedtools_expand/main.nf" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -220,134 +220,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/nextflow/bedtools/bedtools_expand/main.nf b/target/nextflow/bedtools/bedtools_expand/main.nf index 67da93de..a1bf8d90 100644 --- a/target/nextflow/bedtools/bedtools_expand/main.nf +++ b/target/nextflow/bedtools/bedtools_expand/main.nf @@ -3278,7 +3278,7 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/bedtools/bedtools_expand", "viash_version" : "0.9.4", - "git_commit" : "736f18e9887893ca830612b48744fe312fe3c696", + "git_commit" : "666507c86de9150bfbdffdb2dbabc1dbde3c3262", "git_remote" : "https://github.com/viash-hub/biobox" }, "package_config" : { @@ -3295,220 +3295,6 @@ meta = [ ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", ".engines[.type == 'docker'].target_tag := 'v0.4.0'" ], - "authors" : [ - { - "name" : "Robrecht Cannoodt", - "roles" : [ - "author", - "maintainer" - ], - "info" : { - "links" : { - "email" : "robrecht@data-intuitive.com", - "github" : "rcannood", - "orcid" : "0000-0003-3641-729X", - "linkedin" : "robrechtcannoodt" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Science Engineer" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Angela Oliveira Pisco", - "roles" : [ - "author" - ], - "info" : { - "role" : "Contributor", - "links" : { - "github" : "aopisco", - "orcid" : "0000-0003-0142-2355", - "linkedin" : "aopisco" - }, - "organizations" : [ - { - "name" : "Insitro", - "href" : "https://insitro.com", - "role" : "Director of Computational Biology" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Dorien Roosen", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dorien@data-intuitive.com", - "github" : "dorien-er", - "linkedin" : "dorien-roosen" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Dries Schaumont", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dries@data-intuitive.com", - "github" : "DriesSchaumont", - "orcid" : "0000-0002-4389-0440", - "linkedin" : "dries-schaumont" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Emma Rousseau", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "emmarousseau", - "linkedin" : "emmarousseau1" - } - } - }, - { - "name" : "Jakub Majercik", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "jakub@data-intuitive.com", - "github" : "jakubmajercik", - "linkedin" : "jakubmajercik" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Bioinformatics Engineer" - } - ] - } - }, - { - "name" : "Kai Waldrant", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "KaiWaldrant", - "orcid" : "0009-0003-8555-1361", - "linkedin" : "kaiwaldrant" - } - } - }, - { - "name" : "Leïla Paquay", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "Leila011", - "linkedin" : "leilapaquay" - } - } - }, - { - "name" : "Sai Nirmayi Yasa", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "sainirmayi", - "linkedin" : "sai-nirmayi-yasa" - } - } - }, - { - "name" : "Theodoro Gasperin Terra Camargo", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "theodorogtc@gmail.com", - "github" : "tgaspe", - "linkedin" : "theodoro-gasperin-terra-camargo" - } - } - }, - { - "name" : "Toni Verbeiren", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "tverbeiren", - "linkedin" : "verbeiren" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist and CEO" - } - ] - } - }, - { - "name" : "Weiwei Schultz", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "linkedin" : "weiwei-schultz" - }, - "organizations" : [ - { - "name" : "Janssen R&D US", - "role" : "Associate Director Data Sciences" - } - ] - } - } - ], "keywords" : [ "bioinformatics", "modules", diff --git a/target/nextflow/bedtools/bedtools_fisher/.config.vsh.yaml b/target/nextflow/bedtools/bedtools_fisher/.config.vsh.yaml index ef5c1816..e338b4b5 100644 --- a/target/nextflow/bedtools/bedtools_fisher/.config.vsh.yaml +++ b/target/nextflow/bedtools/bedtools_fisher/.config.vsh.yaml @@ -343,7 +343,7 @@ build_info: output: "target/nextflow/bedtools/bedtools_fisher" executable: "target/nextflow/bedtools/bedtools_fisher/main.nf" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -369,134 +369,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/nextflow/bedtools/bedtools_fisher/main.nf b/target/nextflow/bedtools/bedtools_fisher/main.nf index 046f72de..a27eb156 100644 --- a/target/nextflow/bedtools/bedtools_fisher/main.nf +++ b/target/nextflow/bedtools/bedtools_fisher/main.nf @@ -3442,7 +3442,7 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/bedtools/bedtools_fisher", "viash_version" : "0.9.4", - "git_commit" : "736f18e9887893ca830612b48744fe312fe3c696", + "git_commit" : "666507c86de9150bfbdffdb2dbabc1dbde3c3262", "git_remote" : "https://github.com/viash-hub/biobox" }, "package_config" : { @@ -3459,220 +3459,6 @@ meta = [ ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", ".engines[.type == 'docker'].target_tag := 'v0.4.0'" ], - "authors" : [ - { - "name" : "Robrecht Cannoodt", - "roles" : [ - "author", - "maintainer" - ], - "info" : { - "links" : { - "email" : "robrecht@data-intuitive.com", - "github" : "rcannood", - "orcid" : "0000-0003-3641-729X", - "linkedin" : "robrechtcannoodt" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Science Engineer" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Angela Oliveira Pisco", - "roles" : [ - "author" - ], - "info" : { - "role" : "Contributor", - "links" : { - "github" : "aopisco", - "orcid" : "0000-0003-0142-2355", - "linkedin" : "aopisco" - }, - "organizations" : [ - { - "name" : "Insitro", - "href" : "https://insitro.com", - "role" : "Director of Computational Biology" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Dorien Roosen", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dorien@data-intuitive.com", - "github" : "dorien-er", - "linkedin" : "dorien-roosen" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Dries Schaumont", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dries@data-intuitive.com", - "github" : "DriesSchaumont", - "orcid" : "0000-0002-4389-0440", - "linkedin" : "dries-schaumont" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Emma Rousseau", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "emmarousseau", - "linkedin" : "emmarousseau1" - } - } - }, - { - "name" : "Jakub Majercik", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "jakub@data-intuitive.com", - "github" : "jakubmajercik", - "linkedin" : "jakubmajercik" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Bioinformatics Engineer" - } - ] - } - }, - { - "name" : "Kai Waldrant", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "KaiWaldrant", - "orcid" : "0009-0003-8555-1361", - "linkedin" : "kaiwaldrant" - } - } - }, - { - "name" : "Leïla Paquay", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "Leila011", - "linkedin" : "leilapaquay" - } - } - }, - { - "name" : "Sai Nirmayi Yasa", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "sainirmayi", - "linkedin" : "sai-nirmayi-yasa" - } - } - }, - { - "name" : "Theodoro Gasperin Terra Camargo", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "theodorogtc@gmail.com", - "github" : "tgaspe", - "linkedin" : "theodoro-gasperin-terra-camargo" - } - } - }, - { - "name" : "Toni Verbeiren", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "tverbeiren", - "linkedin" : "verbeiren" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist and CEO" - } - ] - } - }, - { - "name" : "Weiwei Schultz", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "linkedin" : "weiwei-schultz" - }, - "organizations" : [ - { - "name" : "Janssen R&D US", - "role" : "Associate Director Data Sciences" - } - ] - } - } - ], "keywords" : [ "bioinformatics", "modules", diff --git a/target/nextflow/bedtools/bedtools_flank/.config.vsh.yaml b/target/nextflow/bedtools/bedtools_flank/.config.vsh.yaml index bde4418c..55feef19 100644 --- a/target/nextflow/bedtools/bedtools_flank/.config.vsh.yaml +++ b/target/nextflow/bedtools/bedtools_flank/.config.vsh.yaml @@ -274,7 +274,7 @@ build_info: output: "target/nextflow/bedtools/bedtools_flank" executable: "target/nextflow/bedtools/bedtools_flank/main.nf" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -300,134 +300,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/nextflow/bedtools/bedtools_flank/main.nf b/target/nextflow/bedtools/bedtools_flank/main.nf index aed8c936..cd5286fd 100644 --- a/target/nextflow/bedtools/bedtools_flank/main.nf +++ b/target/nextflow/bedtools/bedtools_flank/main.nf @@ -3360,7 +3360,7 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/bedtools/bedtools_flank", "viash_version" : "0.9.4", - "git_commit" : "736f18e9887893ca830612b48744fe312fe3c696", + "git_commit" : "666507c86de9150bfbdffdb2dbabc1dbde3c3262", "git_remote" : "https://github.com/viash-hub/biobox" }, "package_config" : { @@ -3377,220 +3377,6 @@ meta = [ ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", ".engines[.type == 'docker'].target_tag := 'v0.4.0'" ], - "authors" : [ - { - "name" : "Robrecht Cannoodt", - "roles" : [ - "author", - "maintainer" - ], - "info" : { - "links" : { - "email" : "robrecht@data-intuitive.com", - "github" : "rcannood", - "orcid" : "0000-0003-3641-729X", - "linkedin" : "robrechtcannoodt" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Science Engineer" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Angela Oliveira Pisco", - "roles" : [ - "author" - ], - "info" : { - "role" : "Contributor", - "links" : { - "github" : "aopisco", - "orcid" : "0000-0003-0142-2355", - "linkedin" : "aopisco" - }, - "organizations" : [ - { - "name" : "Insitro", - "href" : "https://insitro.com", - "role" : "Director of Computational Biology" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Dorien Roosen", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dorien@data-intuitive.com", - "github" : "dorien-er", - "linkedin" : "dorien-roosen" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Dries Schaumont", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dries@data-intuitive.com", - "github" : "DriesSchaumont", - "orcid" : "0000-0002-4389-0440", - "linkedin" : "dries-schaumont" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Emma Rousseau", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "emmarousseau", - "linkedin" : "emmarousseau1" - } - } - }, - { - "name" : "Jakub Majercik", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "jakub@data-intuitive.com", - "github" : "jakubmajercik", - "linkedin" : "jakubmajercik" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Bioinformatics Engineer" - } - ] - } - }, - { - "name" : "Kai Waldrant", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "KaiWaldrant", - "orcid" : "0009-0003-8555-1361", - "linkedin" : "kaiwaldrant" - } - } - }, - { - "name" : "Leïla Paquay", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "Leila011", - "linkedin" : "leilapaquay" - } - } - }, - { - "name" : "Sai Nirmayi Yasa", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "sainirmayi", - "linkedin" : "sai-nirmayi-yasa" - } - } - }, - { - "name" : "Theodoro Gasperin Terra Camargo", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "theodorogtc@gmail.com", - "github" : "tgaspe", - "linkedin" : "theodoro-gasperin-terra-camargo" - } - } - }, - { - "name" : "Toni Verbeiren", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "tverbeiren", - "linkedin" : "verbeiren" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist and CEO" - } - ] - } - }, - { - "name" : "Weiwei Schultz", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "linkedin" : "weiwei-schultz" - }, - "organizations" : [ - { - "name" : "Janssen R&D US", - "role" : "Associate Director Data Sciences" - } - ] - } - } - ], "keywords" : [ "bioinformatics", "modules", diff --git a/target/nextflow/bedtools/bedtools_genomecov/.config.vsh.yaml b/target/nextflow/bedtools/bedtools_genomecov/.config.vsh.yaml index 67dfbdf7..f752f165 100644 --- a/target/nextflow/bedtools/bedtools_genomecov/.config.vsh.yaml +++ b/target/nextflow/bedtools/bedtools_genomecov/.config.vsh.yaml @@ -366,7 +366,7 @@ build_info: output: "target/nextflow/bedtools/bedtools_genomecov" executable: "target/nextflow/bedtools/bedtools_genomecov/main.nf" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -392,134 +392,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/nextflow/bedtools/bedtools_genomecov/main.nf b/target/nextflow/bedtools/bedtools_genomecov/main.nf index a0949668..ff4ee16f 100644 --- a/target/nextflow/bedtools/bedtools_genomecov/main.nf +++ b/target/nextflow/bedtools/bedtools_genomecov/main.nf @@ -3455,7 +3455,7 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/bedtools/bedtools_genomecov", "viash_version" : "0.9.4", - "git_commit" : "736f18e9887893ca830612b48744fe312fe3c696", + "git_commit" : "666507c86de9150bfbdffdb2dbabc1dbde3c3262", "git_remote" : "https://github.com/viash-hub/biobox" }, "package_config" : { @@ -3472,220 +3472,6 @@ meta = [ ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", ".engines[.type == 'docker'].target_tag := 'v0.4.0'" ], - "authors" : [ - { - "name" : "Robrecht Cannoodt", - "roles" : [ - "author", - "maintainer" - ], - "info" : { - "links" : { - "email" : "robrecht@data-intuitive.com", - "github" : "rcannood", - "orcid" : "0000-0003-3641-729X", - "linkedin" : "robrechtcannoodt" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Science Engineer" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Angela Oliveira Pisco", - "roles" : [ - "author" - ], - "info" : { - "role" : "Contributor", - "links" : { - "github" : "aopisco", - "orcid" : "0000-0003-0142-2355", - "linkedin" : "aopisco" - }, - "organizations" : [ - { - "name" : "Insitro", - "href" : "https://insitro.com", - "role" : "Director of Computational Biology" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Dorien Roosen", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dorien@data-intuitive.com", - "github" : "dorien-er", - "linkedin" : "dorien-roosen" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Dries Schaumont", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dries@data-intuitive.com", - "github" : "DriesSchaumont", - "orcid" : "0000-0002-4389-0440", - "linkedin" : "dries-schaumont" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Emma Rousseau", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "emmarousseau", - "linkedin" : "emmarousseau1" - } - } - }, - { - "name" : "Jakub Majercik", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "jakub@data-intuitive.com", - "github" : "jakubmajercik", - "linkedin" : "jakubmajercik" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Bioinformatics Engineer" - } - ] - } - }, - { - "name" : "Kai Waldrant", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "KaiWaldrant", - "orcid" : "0009-0003-8555-1361", - "linkedin" : "kaiwaldrant" - } - } - }, - { - "name" : "Leïla Paquay", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "Leila011", - "linkedin" : "leilapaquay" - } - } - }, - { - "name" : "Sai Nirmayi Yasa", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "sainirmayi", - "linkedin" : "sai-nirmayi-yasa" - } - } - }, - { - "name" : "Theodoro Gasperin Terra Camargo", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "theodorogtc@gmail.com", - "github" : "tgaspe", - "linkedin" : "theodoro-gasperin-terra-camargo" - } - } - }, - { - "name" : "Toni Verbeiren", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "tverbeiren", - "linkedin" : "verbeiren" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist and CEO" - } - ] - } - }, - { - "name" : "Weiwei Schultz", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "linkedin" : "weiwei-schultz" - }, - "organizations" : [ - { - "name" : "Janssen R&D US", - "role" : "Associate Director Data Sciences" - } - ] - } - } - ], "keywords" : [ "bioinformatics", "modules", diff --git a/target/nextflow/bedtools/bedtools_getfasta/.config.vsh.yaml b/target/nextflow/bedtools/bedtools_getfasta/.config.vsh.yaml index 1485be57..b17b1099 100644 --- a/target/nextflow/bedtools/bedtools_getfasta/.config.vsh.yaml +++ b/target/nextflow/bedtools/bedtools_getfasta/.config.vsh.yaml @@ -263,7 +263,7 @@ build_info: output: "target/nextflow/bedtools/bedtools_getfasta" executable: "target/nextflow/bedtools/bedtools_getfasta/main.nf" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -289,134 +289,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/nextflow/bedtools/bedtools_getfasta/main.nf b/target/nextflow/bedtools/bedtools_getfasta/main.nf index 6382ce23..83b4917c 100644 --- a/target/nextflow/bedtools/bedtools_getfasta/main.nf +++ b/target/nextflow/bedtools/bedtools_getfasta/main.nf @@ -3357,7 +3357,7 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/bedtools/bedtools_getfasta", "viash_version" : "0.9.4", - "git_commit" : "736f18e9887893ca830612b48744fe312fe3c696", + "git_commit" : "666507c86de9150bfbdffdb2dbabc1dbde3c3262", "git_remote" : "https://github.com/viash-hub/biobox" }, "package_config" : { @@ -3374,220 +3374,6 @@ meta = [ ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", ".engines[.type == 'docker'].target_tag := 'v0.4.0'" ], - "authors" : [ - { - "name" : "Robrecht Cannoodt", - "roles" : [ - "author", - "maintainer" - ], - "info" : { - "links" : { - "email" : "robrecht@data-intuitive.com", - "github" : "rcannood", - "orcid" : "0000-0003-3641-729X", - "linkedin" : "robrechtcannoodt" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Science Engineer" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Angela Oliveira Pisco", - "roles" : [ - "author" - ], - "info" : { - "role" : "Contributor", - "links" : { - "github" : "aopisco", - "orcid" : "0000-0003-0142-2355", - "linkedin" : "aopisco" - }, - "organizations" : [ - { - "name" : "Insitro", - "href" : "https://insitro.com", - "role" : "Director of Computational Biology" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Dorien Roosen", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dorien@data-intuitive.com", - "github" : "dorien-er", - "linkedin" : "dorien-roosen" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Dries Schaumont", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dries@data-intuitive.com", - "github" : "DriesSchaumont", - "orcid" : "0000-0002-4389-0440", - "linkedin" : "dries-schaumont" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Emma Rousseau", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "emmarousseau", - "linkedin" : "emmarousseau1" - } - } - }, - { - "name" : "Jakub Majercik", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "jakub@data-intuitive.com", - "github" : "jakubmajercik", - "linkedin" : "jakubmajercik" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Bioinformatics Engineer" - } - ] - } - }, - { - "name" : "Kai Waldrant", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "KaiWaldrant", - "orcid" : "0009-0003-8555-1361", - "linkedin" : "kaiwaldrant" - } - } - }, - { - "name" : "Leïla Paquay", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "Leila011", - "linkedin" : "leilapaquay" - } - } - }, - { - "name" : "Sai Nirmayi Yasa", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "sainirmayi", - "linkedin" : "sai-nirmayi-yasa" - } - } - }, - { - "name" : "Theodoro Gasperin Terra Camargo", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "theodorogtc@gmail.com", - "github" : "tgaspe", - "linkedin" : "theodoro-gasperin-terra-camargo" - } - } - }, - { - "name" : "Toni Verbeiren", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "tverbeiren", - "linkedin" : "verbeiren" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist and CEO" - } - ] - } - }, - { - "name" : "Weiwei Schultz", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "linkedin" : "weiwei-schultz" - }, - "organizations" : [ - { - "name" : "Janssen R&D US", - "role" : "Associate Director Data Sciences" - } - ] - } - } - ], "keywords" : [ "bioinformatics", "modules", diff --git a/target/nextflow/bedtools/bedtools_groupby/.config.vsh.yaml b/target/nextflow/bedtools/bedtools_groupby/.config.vsh.yaml index 367cb652..1f088401 100644 --- a/target/nextflow/bedtools/bedtools_groupby/.config.vsh.yaml +++ b/target/nextflow/bedtools/bedtools_groupby/.config.vsh.yaml @@ -285,7 +285,7 @@ build_info: output: "target/nextflow/bedtools/bedtools_groupby" executable: "target/nextflow/bedtools/bedtools_groupby/main.nf" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -311,134 +311,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/nextflow/bedtools/bedtools_groupby/main.nf b/target/nextflow/bedtools/bedtools_groupby/main.nf index eefd58a2..302f2db6 100644 --- a/target/nextflow/bedtools/bedtools_groupby/main.nf +++ b/target/nextflow/bedtools/bedtools_groupby/main.nf @@ -3377,7 +3377,7 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/bedtools/bedtools_groupby", "viash_version" : "0.9.4", - "git_commit" : "736f18e9887893ca830612b48744fe312fe3c696", + "git_commit" : "666507c86de9150bfbdffdb2dbabc1dbde3c3262", "git_remote" : "https://github.com/viash-hub/biobox" }, "package_config" : { @@ -3394,220 +3394,6 @@ meta = [ ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", ".engines[.type == 'docker'].target_tag := 'v0.4.0'" ], - "authors" : [ - { - "name" : "Robrecht Cannoodt", - "roles" : [ - "author", - "maintainer" - ], - "info" : { - "links" : { - "email" : "robrecht@data-intuitive.com", - "github" : "rcannood", - "orcid" : "0000-0003-3641-729X", - "linkedin" : "robrechtcannoodt" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Science Engineer" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Angela Oliveira Pisco", - "roles" : [ - "author" - ], - "info" : { - "role" : "Contributor", - "links" : { - "github" : "aopisco", - "orcid" : "0000-0003-0142-2355", - "linkedin" : "aopisco" - }, - "organizations" : [ - { - "name" : "Insitro", - "href" : "https://insitro.com", - "role" : "Director of Computational Biology" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Dorien Roosen", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dorien@data-intuitive.com", - "github" : "dorien-er", - "linkedin" : "dorien-roosen" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Dries Schaumont", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dries@data-intuitive.com", - "github" : "DriesSchaumont", - "orcid" : "0000-0002-4389-0440", - "linkedin" : "dries-schaumont" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Emma Rousseau", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "emmarousseau", - "linkedin" : "emmarousseau1" - } - } - }, - { - "name" : "Jakub Majercik", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "jakub@data-intuitive.com", - "github" : "jakubmajercik", - "linkedin" : "jakubmajercik" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Bioinformatics Engineer" - } - ] - } - }, - { - "name" : "Kai Waldrant", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "KaiWaldrant", - "orcid" : "0009-0003-8555-1361", - "linkedin" : "kaiwaldrant" - } - } - }, - { - "name" : "Leïla Paquay", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "Leila011", - "linkedin" : "leilapaquay" - } - } - }, - { - "name" : "Sai Nirmayi Yasa", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "sainirmayi", - "linkedin" : "sai-nirmayi-yasa" - } - } - }, - { - "name" : "Theodoro Gasperin Terra Camargo", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "theodorogtc@gmail.com", - "github" : "tgaspe", - "linkedin" : "theodoro-gasperin-terra-camargo" - } - } - }, - { - "name" : "Toni Verbeiren", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "tverbeiren", - "linkedin" : "verbeiren" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist and CEO" - } - ] - } - }, - { - "name" : "Weiwei Schultz", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "linkedin" : "weiwei-schultz" - }, - "organizations" : [ - { - "name" : "Janssen R&D US", - "role" : "Associate Director Data Sciences" - } - ] - } - } - ], "keywords" : [ "bioinformatics", "modules", diff --git a/target/nextflow/bedtools/bedtools_igv/.config.vsh.yaml b/target/nextflow/bedtools/bedtools_igv/.config.vsh.yaml index f961a491..7dec4475 100644 --- a/target/nextflow/bedtools/bedtools_igv/.config.vsh.yaml +++ b/target/nextflow/bedtools/bedtools_igv/.config.vsh.yaml @@ -291,7 +291,7 @@ build_info: output: "target/nextflow/bedtools/bedtools_igv" executable: "target/nextflow/bedtools/bedtools_igv/main.nf" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -317,134 +317,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/nextflow/bedtools/bedtools_igv/main.nf b/target/nextflow/bedtools/bedtools_igv/main.nf index fa1c0a99..62d69a35 100644 --- a/target/nextflow/bedtools/bedtools_igv/main.nf +++ b/target/nextflow/bedtools/bedtools_igv/main.nf @@ -3382,7 +3382,7 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/bedtools/bedtools_igv", "viash_version" : "0.9.4", - "git_commit" : "736f18e9887893ca830612b48744fe312fe3c696", + "git_commit" : "666507c86de9150bfbdffdb2dbabc1dbde3c3262", "git_remote" : "https://github.com/viash-hub/biobox" }, "package_config" : { @@ -3399,220 +3399,6 @@ meta = [ ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", ".engines[.type == 'docker'].target_tag := 'v0.4.0'" ], - "authors" : [ - { - "name" : "Robrecht Cannoodt", - "roles" : [ - "author", - "maintainer" - ], - "info" : { - "links" : { - "email" : "robrecht@data-intuitive.com", - "github" : "rcannood", - "orcid" : "0000-0003-3641-729X", - "linkedin" : "robrechtcannoodt" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Science Engineer" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Angela Oliveira Pisco", - "roles" : [ - "author" - ], - "info" : { - "role" : "Contributor", - "links" : { - "github" : "aopisco", - "orcid" : "0000-0003-0142-2355", - "linkedin" : "aopisco" - }, - "organizations" : [ - { - "name" : "Insitro", - "href" : "https://insitro.com", - "role" : "Director of Computational Biology" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Dorien Roosen", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dorien@data-intuitive.com", - "github" : "dorien-er", - "linkedin" : "dorien-roosen" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Dries Schaumont", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dries@data-intuitive.com", - "github" : "DriesSchaumont", - "orcid" : "0000-0002-4389-0440", - "linkedin" : "dries-schaumont" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Emma Rousseau", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "emmarousseau", - "linkedin" : "emmarousseau1" - } - } - }, - { - "name" : "Jakub Majercik", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "jakub@data-intuitive.com", - "github" : "jakubmajercik", - "linkedin" : "jakubmajercik" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Bioinformatics Engineer" - } - ] - } - }, - { - "name" : "Kai Waldrant", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "KaiWaldrant", - "orcid" : "0009-0003-8555-1361", - "linkedin" : "kaiwaldrant" - } - } - }, - { - "name" : "Leïla Paquay", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "Leila011", - "linkedin" : "leilapaquay" - } - } - }, - { - "name" : "Sai Nirmayi Yasa", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "sainirmayi", - "linkedin" : "sai-nirmayi-yasa" - } - } - }, - { - "name" : "Theodoro Gasperin Terra Camargo", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "theodorogtc@gmail.com", - "github" : "tgaspe", - "linkedin" : "theodoro-gasperin-terra-camargo" - } - } - }, - { - "name" : "Toni Verbeiren", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "tverbeiren", - "linkedin" : "verbeiren" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist and CEO" - } - ] - } - }, - { - "name" : "Weiwei Schultz", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "linkedin" : "weiwei-schultz" - }, - "organizations" : [ - { - "name" : "Janssen R&D US", - "role" : "Associate Director Data Sciences" - } - ] - } - } - ], "keywords" : [ "bioinformatics", "modules", diff --git a/target/nextflow/bedtools/bedtools_intersect/.config.vsh.yaml b/target/nextflow/bedtools/bedtools_intersect/.config.vsh.yaml index 92669c0a..05734ae4 100644 --- a/target/nextflow/bedtools/bedtools_intersect/.config.vsh.yaml +++ b/target/nextflow/bedtools/bedtools_intersect/.config.vsh.yaml @@ -417,7 +417,7 @@ build_info: output: "target/nextflow/bedtools/bedtools_intersect" executable: "target/nextflow/bedtools/bedtools_intersect/main.nf" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -443,134 +443,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/nextflow/bedtools/bedtools_intersect/main.nf b/target/nextflow/bedtools/bedtools_intersect/main.nf index 88374b01..b03d00bc 100644 --- a/target/nextflow/bedtools/bedtools_intersect/main.nf +++ b/target/nextflow/bedtools/bedtools_intersect/main.nf @@ -3520,7 +3520,7 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/bedtools/bedtools_intersect", "viash_version" : "0.9.4", - "git_commit" : "736f18e9887893ca830612b48744fe312fe3c696", + "git_commit" : "666507c86de9150bfbdffdb2dbabc1dbde3c3262", "git_remote" : "https://github.com/viash-hub/biobox" }, "package_config" : { @@ -3537,220 +3537,6 @@ meta = [ ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", ".engines[.type == 'docker'].target_tag := 'v0.4.0'" ], - "authors" : [ - { - "name" : "Robrecht Cannoodt", - "roles" : [ - "author", - "maintainer" - ], - "info" : { - "links" : { - "email" : "robrecht@data-intuitive.com", - "github" : "rcannood", - "orcid" : "0000-0003-3641-729X", - "linkedin" : "robrechtcannoodt" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Science Engineer" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Angela Oliveira Pisco", - "roles" : [ - "author" - ], - "info" : { - "role" : "Contributor", - "links" : { - "github" : "aopisco", - "orcid" : "0000-0003-0142-2355", - "linkedin" : "aopisco" - }, - "organizations" : [ - { - "name" : "Insitro", - "href" : "https://insitro.com", - "role" : "Director of Computational Biology" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Dorien Roosen", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dorien@data-intuitive.com", - "github" : "dorien-er", - "linkedin" : "dorien-roosen" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Dries Schaumont", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dries@data-intuitive.com", - "github" : "DriesSchaumont", - "orcid" : "0000-0002-4389-0440", - "linkedin" : "dries-schaumont" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Emma Rousseau", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "emmarousseau", - "linkedin" : "emmarousseau1" - } - } - }, - { - "name" : "Jakub Majercik", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "jakub@data-intuitive.com", - "github" : "jakubmajercik", - "linkedin" : "jakubmajercik" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Bioinformatics Engineer" - } - ] - } - }, - { - "name" : "Kai Waldrant", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "KaiWaldrant", - "orcid" : "0009-0003-8555-1361", - "linkedin" : "kaiwaldrant" - } - } - }, - { - "name" : "Leïla Paquay", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "Leila011", - "linkedin" : "leilapaquay" - } - } - }, - { - "name" : "Sai Nirmayi Yasa", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "sainirmayi", - "linkedin" : "sai-nirmayi-yasa" - } - } - }, - { - "name" : "Theodoro Gasperin Terra Camargo", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "theodorogtc@gmail.com", - "github" : "tgaspe", - "linkedin" : "theodoro-gasperin-terra-camargo" - } - } - }, - { - "name" : "Toni Verbeiren", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "tverbeiren", - "linkedin" : "verbeiren" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist and CEO" - } - ] - } - }, - { - "name" : "Weiwei Schultz", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "linkedin" : "weiwei-schultz" - }, - "organizations" : [ - { - "name" : "Janssen R&D US", - "role" : "Associate Director Data Sciences" - } - ] - } - } - ], "keywords" : [ "bioinformatics", "modules", diff --git a/target/nextflow/bedtools/bedtools_jaccard/.config.vsh.yaml b/target/nextflow/bedtools/bedtools_jaccard/.config.vsh.yaml index 8643cc83..d0b96328 100644 --- a/target/nextflow/bedtools/bedtools_jaccard/.config.vsh.yaml +++ b/target/nextflow/bedtools/bedtools_jaccard/.config.vsh.yaml @@ -341,7 +341,7 @@ build_info: output: "target/nextflow/bedtools/bedtools_jaccard" executable: "target/nextflow/bedtools/bedtools_jaccard/main.nf" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -367,134 +367,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/nextflow/bedtools/bedtools_jaccard/main.nf b/target/nextflow/bedtools/bedtools_jaccard/main.nf index 5af54621..6d252e11 100644 --- a/target/nextflow/bedtools/bedtools_jaccard/main.nf +++ b/target/nextflow/bedtools/bedtools_jaccard/main.nf @@ -3435,7 +3435,7 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/bedtools/bedtools_jaccard", "viash_version" : "0.9.4", - "git_commit" : "736f18e9887893ca830612b48744fe312fe3c696", + "git_commit" : "666507c86de9150bfbdffdb2dbabc1dbde3c3262", "git_remote" : "https://github.com/viash-hub/biobox" }, "package_config" : { @@ -3452,220 +3452,6 @@ meta = [ ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", ".engines[.type == 'docker'].target_tag := 'v0.4.0'" ], - "authors" : [ - { - "name" : "Robrecht Cannoodt", - "roles" : [ - "author", - "maintainer" - ], - "info" : { - "links" : { - "email" : "robrecht@data-intuitive.com", - "github" : "rcannood", - "orcid" : "0000-0003-3641-729X", - "linkedin" : "robrechtcannoodt" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Science Engineer" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Angela Oliveira Pisco", - "roles" : [ - "author" - ], - "info" : { - "role" : "Contributor", - "links" : { - "github" : "aopisco", - "orcid" : "0000-0003-0142-2355", - "linkedin" : "aopisco" - }, - "organizations" : [ - { - "name" : "Insitro", - "href" : "https://insitro.com", - "role" : "Director of Computational Biology" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Dorien Roosen", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dorien@data-intuitive.com", - "github" : "dorien-er", - "linkedin" : "dorien-roosen" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Dries Schaumont", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dries@data-intuitive.com", - "github" : "DriesSchaumont", - "orcid" : "0000-0002-4389-0440", - "linkedin" : "dries-schaumont" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Emma Rousseau", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "emmarousseau", - "linkedin" : "emmarousseau1" - } - } - }, - { - "name" : "Jakub Majercik", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "jakub@data-intuitive.com", - "github" : "jakubmajercik", - "linkedin" : "jakubmajercik" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Bioinformatics Engineer" - } - ] - } - }, - { - "name" : "Kai Waldrant", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "KaiWaldrant", - "orcid" : "0009-0003-8555-1361", - "linkedin" : "kaiwaldrant" - } - } - }, - { - "name" : "Leïla Paquay", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "Leila011", - "linkedin" : "leilapaquay" - } - } - }, - { - "name" : "Sai Nirmayi Yasa", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "sainirmayi", - "linkedin" : "sai-nirmayi-yasa" - } - } - }, - { - "name" : "Theodoro Gasperin Terra Camargo", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "theodorogtc@gmail.com", - "github" : "tgaspe", - "linkedin" : "theodoro-gasperin-terra-camargo" - } - } - }, - { - "name" : "Toni Verbeiren", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "tverbeiren", - "linkedin" : "verbeiren" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist and CEO" - } - ] - } - }, - { - "name" : "Weiwei Schultz", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "linkedin" : "weiwei-schultz" - }, - "organizations" : [ - { - "name" : "Janssen R&D US", - "role" : "Associate Director Data Sciences" - } - ] - } - } - ], "keywords" : [ "bioinformatics", "modules", diff --git a/target/nextflow/bedtools/bedtools_links/.config.vsh.yaml b/target/nextflow/bedtools/bedtools_links/.config.vsh.yaml index ed4511f5..e9916171 100644 --- a/target/nextflow/bedtools/bedtools_links/.config.vsh.yaml +++ b/target/nextflow/bedtools/bedtools_links/.config.vsh.yaml @@ -237,7 +237,7 @@ build_info: output: "target/nextflow/bedtools/bedtools_links" executable: "target/nextflow/bedtools/bedtools_links/main.nf" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -263,134 +263,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/nextflow/bedtools/bedtools_links/main.nf b/target/nextflow/bedtools/bedtools_links/main.nf index a5642c98..2ab960d9 100644 --- a/target/nextflow/bedtools/bedtools_links/main.nf +++ b/target/nextflow/bedtools/bedtools_links/main.nf @@ -3327,7 +3327,7 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/bedtools/bedtools_links", "viash_version" : "0.9.4", - "git_commit" : "736f18e9887893ca830612b48744fe312fe3c696", + "git_commit" : "666507c86de9150bfbdffdb2dbabc1dbde3c3262", "git_remote" : "https://github.com/viash-hub/biobox" }, "package_config" : { @@ -3344,220 +3344,6 @@ meta = [ ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", ".engines[.type == 'docker'].target_tag := 'v0.4.0'" ], - "authors" : [ - { - "name" : "Robrecht Cannoodt", - "roles" : [ - "author", - "maintainer" - ], - "info" : { - "links" : { - "email" : "robrecht@data-intuitive.com", - "github" : "rcannood", - "orcid" : "0000-0003-3641-729X", - "linkedin" : "robrechtcannoodt" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Science Engineer" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Angela Oliveira Pisco", - "roles" : [ - "author" - ], - "info" : { - "role" : "Contributor", - "links" : { - "github" : "aopisco", - "orcid" : "0000-0003-0142-2355", - "linkedin" : "aopisco" - }, - "organizations" : [ - { - "name" : "Insitro", - "href" : "https://insitro.com", - "role" : "Director of Computational Biology" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Dorien Roosen", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dorien@data-intuitive.com", - "github" : "dorien-er", - "linkedin" : "dorien-roosen" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Dries Schaumont", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dries@data-intuitive.com", - "github" : "DriesSchaumont", - "orcid" : "0000-0002-4389-0440", - "linkedin" : "dries-schaumont" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Emma Rousseau", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "emmarousseau", - "linkedin" : "emmarousseau1" - } - } - }, - { - "name" : "Jakub Majercik", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "jakub@data-intuitive.com", - "github" : "jakubmajercik", - "linkedin" : "jakubmajercik" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Bioinformatics Engineer" - } - ] - } - }, - { - "name" : "Kai Waldrant", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "KaiWaldrant", - "orcid" : "0009-0003-8555-1361", - "linkedin" : "kaiwaldrant" - } - } - }, - { - "name" : "Leïla Paquay", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "Leila011", - "linkedin" : "leilapaquay" - } - } - }, - { - "name" : "Sai Nirmayi Yasa", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "sainirmayi", - "linkedin" : "sai-nirmayi-yasa" - } - } - }, - { - "name" : "Theodoro Gasperin Terra Camargo", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "theodorogtc@gmail.com", - "github" : "tgaspe", - "linkedin" : "theodoro-gasperin-terra-camargo" - } - } - }, - { - "name" : "Toni Verbeiren", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "tverbeiren", - "linkedin" : "verbeiren" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist and CEO" - } - ] - } - }, - { - "name" : "Weiwei Schultz", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "linkedin" : "weiwei-schultz" - }, - "organizations" : [ - { - "name" : "Janssen R&D US", - "role" : "Associate Director Data Sciences" - } - ] - } - } - ], "keywords" : [ "bioinformatics", "modules", diff --git a/target/nextflow/bedtools/bedtools_makewindows/.config.vsh.yaml b/target/nextflow/bedtools/bedtools_makewindows/.config.vsh.yaml index 21f9c398..98bb9e8f 100644 --- a/target/nextflow/bedtools/bedtools_makewindows/.config.vsh.yaml +++ b/target/nextflow/bedtools/bedtools_makewindows/.config.vsh.yaml @@ -279,7 +279,7 @@ build_info: output: "target/nextflow/bedtools/bedtools_makewindows" executable: "target/nextflow/bedtools/bedtools_makewindows/main.nf" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -305,134 +305,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/nextflow/bedtools/bedtools_makewindows/main.nf b/target/nextflow/bedtools/bedtools_makewindows/main.nf index 6f0ab799..b4ba35f4 100644 --- a/target/nextflow/bedtools/bedtools_makewindows/main.nf +++ b/target/nextflow/bedtools/bedtools_makewindows/main.nf @@ -3359,7 +3359,7 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/bedtools/bedtools_makewindows", "viash_version" : "0.9.4", - "git_commit" : "736f18e9887893ca830612b48744fe312fe3c696", + "git_commit" : "666507c86de9150bfbdffdb2dbabc1dbde3c3262", "git_remote" : "https://github.com/viash-hub/biobox" }, "package_config" : { @@ -3376,220 +3376,6 @@ meta = [ ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", ".engines[.type == 'docker'].target_tag := 'v0.4.0'" ], - "authors" : [ - { - "name" : "Robrecht Cannoodt", - "roles" : [ - "author", - "maintainer" - ], - "info" : { - "links" : { - "email" : "robrecht@data-intuitive.com", - "github" : "rcannood", - "orcid" : "0000-0003-3641-729X", - "linkedin" : "robrechtcannoodt" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Science Engineer" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Angela Oliveira Pisco", - "roles" : [ - "author" - ], - "info" : { - "role" : "Contributor", - "links" : { - "github" : "aopisco", - "orcid" : "0000-0003-0142-2355", - "linkedin" : "aopisco" - }, - "organizations" : [ - { - "name" : "Insitro", - "href" : "https://insitro.com", - "role" : "Director of Computational Biology" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Dorien Roosen", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dorien@data-intuitive.com", - "github" : "dorien-er", - "linkedin" : "dorien-roosen" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Dries Schaumont", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dries@data-intuitive.com", - "github" : "DriesSchaumont", - "orcid" : "0000-0002-4389-0440", - "linkedin" : "dries-schaumont" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Emma Rousseau", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "emmarousseau", - "linkedin" : "emmarousseau1" - } - } - }, - { - "name" : "Jakub Majercik", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "jakub@data-intuitive.com", - "github" : "jakubmajercik", - "linkedin" : "jakubmajercik" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Bioinformatics Engineer" - } - ] - } - }, - { - "name" : "Kai Waldrant", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "KaiWaldrant", - "orcid" : "0009-0003-8555-1361", - "linkedin" : "kaiwaldrant" - } - } - }, - { - "name" : "Leïla Paquay", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "Leila011", - "linkedin" : "leilapaquay" - } - } - }, - { - "name" : "Sai Nirmayi Yasa", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "sainirmayi", - "linkedin" : "sai-nirmayi-yasa" - } - } - }, - { - "name" : "Theodoro Gasperin Terra Camargo", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "theodorogtc@gmail.com", - "github" : "tgaspe", - "linkedin" : "theodoro-gasperin-terra-camargo" - } - } - }, - { - "name" : "Toni Verbeiren", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "tverbeiren", - "linkedin" : "verbeiren" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist and CEO" - } - ] - } - }, - { - "name" : "Weiwei Schultz", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "linkedin" : "weiwei-schultz" - }, - "organizations" : [ - { - "name" : "Janssen R&D US", - "role" : "Associate Director Data Sciences" - } - ] - } - } - ], "keywords" : [ "bioinformatics", "modules", diff --git a/target/nextflow/bedtools/bedtools_map/.config.vsh.yaml b/target/nextflow/bedtools/bedtools_map/.config.vsh.yaml index b125cada..a60346ff 100644 --- a/target/nextflow/bedtools/bedtools_map/.config.vsh.yaml +++ b/target/nextflow/bedtools/bedtools_map/.config.vsh.yaml @@ -404,7 +404,7 @@ build_info: output: "target/nextflow/bedtools/bedtools_map" executable: "target/nextflow/bedtools/bedtools_map/main.nf" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -430,134 +430,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/nextflow/bedtools/bedtools_map/main.nf b/target/nextflow/bedtools/bedtools_map/main.nf index 3637d787..49954f87 100644 --- a/target/nextflow/bedtools/bedtools_map/main.nf +++ b/target/nextflow/bedtools/bedtools_map/main.nf @@ -3500,7 +3500,7 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/bedtools/bedtools_map", "viash_version" : "0.9.4", - "git_commit" : "736f18e9887893ca830612b48744fe312fe3c696", + "git_commit" : "666507c86de9150bfbdffdb2dbabc1dbde3c3262", "git_remote" : "https://github.com/viash-hub/biobox" }, "package_config" : { @@ -3517,220 +3517,6 @@ meta = [ ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", ".engines[.type == 'docker'].target_tag := 'v0.4.0'" ], - "authors" : [ - { - "name" : "Robrecht Cannoodt", - "roles" : [ - "author", - "maintainer" - ], - "info" : { - "links" : { - "email" : "robrecht@data-intuitive.com", - "github" : "rcannood", - "orcid" : "0000-0003-3641-729X", - "linkedin" : "robrechtcannoodt" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Science Engineer" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Angela Oliveira Pisco", - "roles" : [ - "author" - ], - "info" : { - "role" : "Contributor", - "links" : { - "github" : "aopisco", - "orcid" : "0000-0003-0142-2355", - "linkedin" : "aopisco" - }, - "organizations" : [ - { - "name" : "Insitro", - "href" : "https://insitro.com", - "role" : "Director of Computational Biology" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Dorien Roosen", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dorien@data-intuitive.com", - "github" : "dorien-er", - "linkedin" : "dorien-roosen" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Dries Schaumont", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dries@data-intuitive.com", - "github" : "DriesSchaumont", - "orcid" : "0000-0002-4389-0440", - "linkedin" : "dries-schaumont" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Emma Rousseau", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "emmarousseau", - "linkedin" : "emmarousseau1" - } - } - }, - { - "name" : "Jakub Majercik", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "jakub@data-intuitive.com", - "github" : "jakubmajercik", - "linkedin" : "jakubmajercik" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Bioinformatics Engineer" - } - ] - } - }, - { - "name" : "Kai Waldrant", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "KaiWaldrant", - "orcid" : "0009-0003-8555-1361", - "linkedin" : "kaiwaldrant" - } - } - }, - { - "name" : "Leïla Paquay", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "Leila011", - "linkedin" : "leilapaquay" - } - } - }, - { - "name" : "Sai Nirmayi Yasa", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "sainirmayi", - "linkedin" : "sai-nirmayi-yasa" - } - } - }, - { - "name" : "Theodoro Gasperin Terra Camargo", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "theodorogtc@gmail.com", - "github" : "tgaspe", - "linkedin" : "theodoro-gasperin-terra-camargo" - } - } - }, - { - "name" : "Toni Verbeiren", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "tverbeiren", - "linkedin" : "verbeiren" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist and CEO" - } - ] - } - }, - { - "name" : "Weiwei Schultz", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "linkedin" : "weiwei-schultz" - }, - "organizations" : [ - { - "name" : "Janssen R&D US", - "role" : "Associate Director Data Sciences" - } - ] - } - } - ], "keywords" : [ "bioinformatics", "modules", diff --git a/target/nextflow/bedtools/bedtools_maskfasta/.config.vsh.yaml b/target/nextflow/bedtools/bedtools_maskfasta/.config.vsh.yaml index 996f2fe4..a6c1a2cc 100644 --- a/target/nextflow/bedtools/bedtools_maskfasta/.config.vsh.yaml +++ b/target/nextflow/bedtools/bedtools_maskfasta/.config.vsh.yaml @@ -240,7 +240,7 @@ build_info: output: "target/nextflow/bedtools/bedtools_maskfasta" executable: "target/nextflow/bedtools/bedtools_maskfasta/main.nf" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -266,134 +266,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/nextflow/bedtools/bedtools_maskfasta/main.nf b/target/nextflow/bedtools/bedtools_maskfasta/main.nf index 100081ae..6fd24c75 100644 --- a/target/nextflow/bedtools/bedtools_maskfasta/main.nf +++ b/target/nextflow/bedtools/bedtools_maskfasta/main.nf @@ -3316,7 +3316,7 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/bedtools/bedtools_maskfasta", "viash_version" : "0.9.4", - "git_commit" : "736f18e9887893ca830612b48744fe312fe3c696", + "git_commit" : "666507c86de9150bfbdffdb2dbabc1dbde3c3262", "git_remote" : "https://github.com/viash-hub/biobox" }, "package_config" : { @@ -3333,220 +3333,6 @@ meta = [ ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", ".engines[.type == 'docker'].target_tag := 'v0.4.0'" ], - "authors" : [ - { - "name" : "Robrecht Cannoodt", - "roles" : [ - "author", - "maintainer" - ], - "info" : { - "links" : { - "email" : "robrecht@data-intuitive.com", - "github" : "rcannood", - "orcid" : "0000-0003-3641-729X", - "linkedin" : "robrechtcannoodt" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Science Engineer" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Angela Oliveira Pisco", - "roles" : [ - "author" - ], - "info" : { - "role" : "Contributor", - "links" : { - "github" : "aopisco", - "orcid" : "0000-0003-0142-2355", - "linkedin" : "aopisco" - }, - "organizations" : [ - { - "name" : "Insitro", - "href" : "https://insitro.com", - "role" : "Director of Computational Biology" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Dorien Roosen", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dorien@data-intuitive.com", - "github" : "dorien-er", - "linkedin" : "dorien-roosen" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Dries Schaumont", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dries@data-intuitive.com", - "github" : "DriesSchaumont", - "orcid" : "0000-0002-4389-0440", - "linkedin" : "dries-schaumont" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Emma Rousseau", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "emmarousseau", - "linkedin" : "emmarousseau1" - } - } - }, - { - "name" : "Jakub Majercik", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "jakub@data-intuitive.com", - "github" : "jakubmajercik", - "linkedin" : "jakubmajercik" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Bioinformatics Engineer" - } - ] - } - }, - { - "name" : "Kai Waldrant", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "KaiWaldrant", - "orcid" : "0009-0003-8555-1361", - "linkedin" : "kaiwaldrant" - } - } - }, - { - "name" : "Leïla Paquay", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "Leila011", - "linkedin" : "leilapaquay" - } - } - }, - { - "name" : "Sai Nirmayi Yasa", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "sainirmayi", - "linkedin" : "sai-nirmayi-yasa" - } - } - }, - { - "name" : "Theodoro Gasperin Terra Camargo", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "theodorogtc@gmail.com", - "github" : "tgaspe", - "linkedin" : "theodoro-gasperin-terra-camargo" - } - } - }, - { - "name" : "Toni Verbeiren", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "tverbeiren", - "linkedin" : "verbeiren" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist and CEO" - } - ] - } - }, - { - "name" : "Weiwei Schultz", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "linkedin" : "weiwei-schultz" - }, - "organizations" : [ - { - "name" : "Janssen R&D US", - "role" : "Associate Director Data Sciences" - } - ] - } - } - ], "keywords" : [ "bioinformatics", "modules", diff --git a/target/nextflow/bedtools/bedtools_merge/.config.vsh.yaml b/target/nextflow/bedtools/bedtools_merge/.config.vsh.yaml index 0dabd3af..07f0970e 100644 --- a/target/nextflow/bedtools/bedtools_merge/.config.vsh.yaml +++ b/target/nextflow/bedtools/bedtools_merge/.config.vsh.yaml @@ -328,7 +328,7 @@ build_info: output: "target/nextflow/bedtools/bedtools_merge" executable: "target/nextflow/bedtools/bedtools_merge/main.nf" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -354,134 +354,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/nextflow/bedtools/bedtools_merge/main.nf b/target/nextflow/bedtools/bedtools_merge/main.nf index bb0a8164..5d237798 100644 --- a/target/nextflow/bedtools/bedtools_merge/main.nf +++ b/target/nextflow/bedtools/bedtools_merge/main.nf @@ -3411,7 +3411,7 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/bedtools/bedtools_merge", "viash_version" : "0.9.4", - "git_commit" : "736f18e9887893ca830612b48744fe312fe3c696", + "git_commit" : "666507c86de9150bfbdffdb2dbabc1dbde3c3262", "git_remote" : "https://github.com/viash-hub/biobox" }, "package_config" : { @@ -3428,220 +3428,6 @@ meta = [ ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", ".engines[.type == 'docker'].target_tag := 'v0.4.0'" ], - "authors" : [ - { - "name" : "Robrecht Cannoodt", - "roles" : [ - "author", - "maintainer" - ], - "info" : { - "links" : { - "email" : "robrecht@data-intuitive.com", - "github" : "rcannood", - "orcid" : "0000-0003-3641-729X", - "linkedin" : "robrechtcannoodt" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Science Engineer" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Angela Oliveira Pisco", - "roles" : [ - "author" - ], - "info" : { - "role" : "Contributor", - "links" : { - "github" : "aopisco", - "orcid" : "0000-0003-0142-2355", - "linkedin" : "aopisco" - }, - "organizations" : [ - { - "name" : "Insitro", - "href" : "https://insitro.com", - "role" : "Director of Computational Biology" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Dorien Roosen", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dorien@data-intuitive.com", - "github" : "dorien-er", - "linkedin" : "dorien-roosen" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Dries Schaumont", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dries@data-intuitive.com", - "github" : "DriesSchaumont", - "orcid" : "0000-0002-4389-0440", - "linkedin" : "dries-schaumont" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Emma Rousseau", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "emmarousseau", - "linkedin" : "emmarousseau1" - } - } - }, - { - "name" : "Jakub Majercik", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "jakub@data-intuitive.com", - "github" : "jakubmajercik", - "linkedin" : "jakubmajercik" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Bioinformatics Engineer" - } - ] - } - }, - { - "name" : "Kai Waldrant", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "KaiWaldrant", - "orcid" : "0009-0003-8555-1361", - "linkedin" : "kaiwaldrant" - } - } - }, - { - "name" : "Leïla Paquay", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "Leila011", - "linkedin" : "leilapaquay" - } - } - }, - { - "name" : "Sai Nirmayi Yasa", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "sainirmayi", - "linkedin" : "sai-nirmayi-yasa" - } - } - }, - { - "name" : "Theodoro Gasperin Terra Camargo", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "theodorogtc@gmail.com", - "github" : "tgaspe", - "linkedin" : "theodoro-gasperin-terra-camargo" - } - } - }, - { - "name" : "Toni Verbeiren", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "tverbeiren", - "linkedin" : "verbeiren" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist and CEO" - } - ] - } - }, - { - "name" : "Weiwei Schultz", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "linkedin" : "weiwei-schultz" - }, - "organizations" : [ - { - "name" : "Janssen R&D US", - "role" : "Associate Director Data Sciences" - } - ] - } - } - ], "keywords" : [ "bioinformatics", "modules", diff --git a/target/nextflow/bedtools/bedtools_multicov/.config.vsh.yaml b/target/nextflow/bedtools/bedtools_multicov/.config.vsh.yaml index d9c6b4b5..48cef3fc 100644 --- a/target/nextflow/bedtools/bedtools_multicov/.config.vsh.yaml +++ b/target/nextflow/bedtools/bedtools_multicov/.config.vsh.yaml @@ -315,7 +315,7 @@ build_info: output: "target/nextflow/bedtools/bedtools_multicov" executable: "target/nextflow/bedtools/bedtools_multicov/main.nf" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -341,134 +341,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/nextflow/bedtools/bedtools_multicov/main.nf b/target/nextflow/bedtools/bedtools_multicov/main.nf index c874bf7a..ecaf4a86 100644 --- a/target/nextflow/bedtools/bedtools_multicov/main.nf +++ b/target/nextflow/bedtools/bedtools_multicov/main.nf @@ -3389,7 +3389,7 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/bedtools/bedtools_multicov", "viash_version" : "0.9.4", - "git_commit" : "736f18e9887893ca830612b48744fe312fe3c696", + "git_commit" : "666507c86de9150bfbdffdb2dbabc1dbde3c3262", "git_remote" : "https://github.com/viash-hub/biobox" }, "package_config" : { @@ -3406,220 +3406,6 @@ meta = [ ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", ".engines[.type == 'docker'].target_tag := 'v0.4.0'" ], - "authors" : [ - { - "name" : "Robrecht Cannoodt", - "roles" : [ - "author", - "maintainer" - ], - "info" : { - "links" : { - "email" : "robrecht@data-intuitive.com", - "github" : "rcannood", - "orcid" : "0000-0003-3641-729X", - "linkedin" : "robrechtcannoodt" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Science Engineer" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Angela Oliveira Pisco", - "roles" : [ - "author" - ], - "info" : { - "role" : "Contributor", - "links" : { - "github" : "aopisco", - "orcid" : "0000-0003-0142-2355", - "linkedin" : "aopisco" - }, - "organizations" : [ - { - "name" : "Insitro", - "href" : "https://insitro.com", - "role" : "Director of Computational Biology" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Dorien Roosen", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dorien@data-intuitive.com", - "github" : "dorien-er", - "linkedin" : "dorien-roosen" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Dries Schaumont", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dries@data-intuitive.com", - "github" : "DriesSchaumont", - "orcid" : "0000-0002-4389-0440", - "linkedin" : "dries-schaumont" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Emma Rousseau", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "emmarousseau", - "linkedin" : "emmarousseau1" - } - } - }, - { - "name" : "Jakub Majercik", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "jakub@data-intuitive.com", - "github" : "jakubmajercik", - "linkedin" : "jakubmajercik" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Bioinformatics Engineer" - } - ] - } - }, - { - "name" : "Kai Waldrant", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "KaiWaldrant", - "orcid" : "0009-0003-8555-1361", - "linkedin" : "kaiwaldrant" - } - } - }, - { - "name" : "Leïla Paquay", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "Leila011", - "linkedin" : "leilapaquay" - } - } - }, - { - "name" : "Sai Nirmayi Yasa", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "sainirmayi", - "linkedin" : "sai-nirmayi-yasa" - } - } - }, - { - "name" : "Theodoro Gasperin Terra Camargo", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "theodorogtc@gmail.com", - "github" : "tgaspe", - "linkedin" : "theodoro-gasperin-terra-camargo" - } - } - }, - { - "name" : "Toni Verbeiren", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "tverbeiren", - "linkedin" : "verbeiren" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist and CEO" - } - ] - } - }, - { - "name" : "Weiwei Schultz", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "linkedin" : "weiwei-schultz" - }, - "organizations" : [ - { - "name" : "Janssen R&D US", - "role" : "Associate Director Data Sciences" - } - ] - } - } - ], "keywords" : [ "bioinformatics", "modules", diff --git a/target/nextflow/bedtools/bedtools_multiinter/.config.vsh.yaml b/target/nextflow/bedtools/bedtools_multiinter/.config.vsh.yaml index 8ad60e9c..a89068c2 100644 --- a/target/nextflow/bedtools/bedtools_multiinter/.config.vsh.yaml +++ b/target/nextflow/bedtools/bedtools_multiinter/.config.vsh.yaml @@ -261,7 +261,7 @@ build_info: output: "target/nextflow/bedtools/bedtools_multiinter" executable: "target/nextflow/bedtools/bedtools_multiinter/main.nf" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -287,134 +287,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/nextflow/bedtools/bedtools_multiinter/main.nf b/target/nextflow/bedtools/bedtools_multiinter/main.nf index 0d803b51..74d5ba0b 100644 --- a/target/nextflow/bedtools/bedtools_multiinter/main.nf +++ b/target/nextflow/bedtools/bedtools_multiinter/main.nf @@ -3332,7 +3332,7 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/bedtools/bedtools_multiinter", "viash_version" : "0.9.4", - "git_commit" : "736f18e9887893ca830612b48744fe312fe3c696", + "git_commit" : "666507c86de9150bfbdffdb2dbabc1dbde3c3262", "git_remote" : "https://github.com/viash-hub/biobox" }, "package_config" : { @@ -3349,220 +3349,6 @@ meta = [ ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", ".engines[.type == 'docker'].target_tag := 'v0.4.0'" ], - "authors" : [ - { - "name" : "Robrecht Cannoodt", - "roles" : [ - "author", - "maintainer" - ], - "info" : { - "links" : { - "email" : "robrecht@data-intuitive.com", - "github" : "rcannood", - "orcid" : "0000-0003-3641-729X", - "linkedin" : "robrechtcannoodt" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Science Engineer" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Angela Oliveira Pisco", - "roles" : [ - "author" - ], - "info" : { - "role" : "Contributor", - "links" : { - "github" : "aopisco", - "orcid" : "0000-0003-0142-2355", - "linkedin" : "aopisco" - }, - "organizations" : [ - { - "name" : "Insitro", - "href" : "https://insitro.com", - "role" : "Director of Computational Biology" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Dorien Roosen", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dorien@data-intuitive.com", - "github" : "dorien-er", - "linkedin" : "dorien-roosen" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Dries Schaumont", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dries@data-intuitive.com", - "github" : "DriesSchaumont", - "orcid" : "0000-0002-4389-0440", - "linkedin" : "dries-schaumont" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Emma Rousseau", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "emmarousseau", - "linkedin" : "emmarousseau1" - } - } - }, - { - "name" : "Jakub Majercik", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "jakub@data-intuitive.com", - "github" : "jakubmajercik", - "linkedin" : "jakubmajercik" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Bioinformatics Engineer" - } - ] - } - }, - { - "name" : "Kai Waldrant", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "KaiWaldrant", - "orcid" : "0009-0003-8555-1361", - "linkedin" : "kaiwaldrant" - } - } - }, - { - "name" : "Leïla Paquay", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "Leila011", - "linkedin" : "leilapaquay" - } - } - }, - { - "name" : "Sai Nirmayi Yasa", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "sainirmayi", - "linkedin" : "sai-nirmayi-yasa" - } - } - }, - { - "name" : "Theodoro Gasperin Terra Camargo", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "theodorogtc@gmail.com", - "github" : "tgaspe", - "linkedin" : "theodoro-gasperin-terra-camargo" - } - } - }, - { - "name" : "Toni Verbeiren", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "tverbeiren", - "linkedin" : "verbeiren" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist and CEO" - } - ] - } - }, - { - "name" : "Weiwei Schultz", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "linkedin" : "weiwei-schultz" - }, - "organizations" : [ - { - "name" : "Janssen R&D US", - "role" : "Associate Director Data Sciences" - } - ] - } - } - ], "keywords" : [ "bioinformatics", "modules", diff --git a/target/nextflow/bedtools/bedtools_overlap/.config.vsh.yaml b/target/nextflow/bedtools/bedtools_overlap/.config.vsh.yaml index 02d0c900..ca8c01ee 100644 --- a/target/nextflow/bedtools/bedtools_overlap/.config.vsh.yaml +++ b/target/nextflow/bedtools/bedtools_overlap/.config.vsh.yaml @@ -206,7 +206,7 @@ build_info: output: "target/nextflow/bedtools/bedtools_overlap" executable: "target/nextflow/bedtools/bedtools_overlap/main.nf" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -232,134 +232,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/nextflow/bedtools/bedtools_overlap/main.nf b/target/nextflow/bedtools/bedtools_overlap/main.nf index 51b2e6f2..5ec99544 100644 --- a/target/nextflow/bedtools/bedtools_overlap/main.nf +++ b/target/nextflow/bedtools/bedtools_overlap/main.nf @@ -3276,7 +3276,7 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/bedtools/bedtools_overlap", "viash_version" : "0.9.4", - "git_commit" : "736f18e9887893ca830612b48744fe312fe3c696", + "git_commit" : "666507c86de9150bfbdffdb2dbabc1dbde3c3262", "git_remote" : "https://github.com/viash-hub/biobox" }, "package_config" : { @@ -3293,220 +3293,6 @@ meta = [ ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", ".engines[.type == 'docker'].target_tag := 'v0.4.0'" ], - "authors" : [ - { - "name" : "Robrecht Cannoodt", - "roles" : [ - "author", - "maintainer" - ], - "info" : { - "links" : { - "email" : "robrecht@data-intuitive.com", - "github" : "rcannood", - "orcid" : "0000-0003-3641-729X", - "linkedin" : "robrechtcannoodt" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Science Engineer" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Angela Oliveira Pisco", - "roles" : [ - "author" - ], - "info" : { - "role" : "Contributor", - "links" : { - "github" : "aopisco", - "orcid" : "0000-0003-0142-2355", - "linkedin" : "aopisco" - }, - "organizations" : [ - { - "name" : "Insitro", - "href" : "https://insitro.com", - "role" : "Director of Computational Biology" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Dorien Roosen", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dorien@data-intuitive.com", - "github" : "dorien-er", - "linkedin" : "dorien-roosen" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Dries Schaumont", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dries@data-intuitive.com", - "github" : "DriesSchaumont", - "orcid" : "0000-0002-4389-0440", - "linkedin" : "dries-schaumont" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Emma Rousseau", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "emmarousseau", - "linkedin" : "emmarousseau1" - } - } - }, - { - "name" : "Jakub Majercik", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "jakub@data-intuitive.com", - "github" : "jakubmajercik", - "linkedin" : "jakubmajercik" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Bioinformatics Engineer" - } - ] - } - }, - { - "name" : "Kai Waldrant", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "KaiWaldrant", - "orcid" : "0009-0003-8555-1361", - "linkedin" : "kaiwaldrant" - } - } - }, - { - "name" : "Leïla Paquay", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "Leila011", - "linkedin" : "leilapaquay" - } - } - }, - { - "name" : "Sai Nirmayi Yasa", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "sainirmayi", - "linkedin" : "sai-nirmayi-yasa" - } - } - }, - { - "name" : "Theodoro Gasperin Terra Camargo", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "theodorogtc@gmail.com", - "github" : "tgaspe", - "linkedin" : "theodoro-gasperin-terra-camargo" - } - } - }, - { - "name" : "Toni Verbeiren", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "tverbeiren", - "linkedin" : "verbeiren" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist and CEO" - } - ] - } - }, - { - "name" : "Weiwei Schultz", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "linkedin" : "weiwei-schultz" - }, - "organizations" : [ - { - "name" : "Janssen R&D US", - "role" : "Associate Director Data Sciences" - } - ] - } - } - ], "keywords" : [ "bioinformatics", "modules", diff --git a/target/nextflow/bedtools/bedtools_pairtobed/.config.vsh.yaml b/target/nextflow/bedtools/bedtools_pairtobed/.config.vsh.yaml index ccc0df2d..64c4475d 100644 --- a/target/nextflow/bedtools/bedtools_pairtobed/.config.vsh.yaml +++ b/target/nextflow/bedtools/bedtools_pairtobed/.config.vsh.yaml @@ -330,7 +330,7 @@ build_info: output: "target/nextflow/bedtools/bedtools_pairtobed" executable: "target/nextflow/bedtools/bedtools_pairtobed/main.nf" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -356,134 +356,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/nextflow/bedtools/bedtools_pairtobed/main.nf b/target/nextflow/bedtools/bedtools_pairtobed/main.nf index 26ceff32..adccd5ba 100644 --- a/target/nextflow/bedtools/bedtools_pairtobed/main.nf +++ b/target/nextflow/bedtools/bedtools_pairtobed/main.nf @@ -3400,7 +3400,7 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/bedtools/bedtools_pairtobed", "viash_version" : "0.9.4", - "git_commit" : "736f18e9887893ca830612b48744fe312fe3c696", + "git_commit" : "666507c86de9150bfbdffdb2dbabc1dbde3c3262", "git_remote" : "https://github.com/viash-hub/biobox" }, "package_config" : { @@ -3417,220 +3417,6 @@ meta = [ ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", ".engines[.type == 'docker'].target_tag := 'v0.4.0'" ], - "authors" : [ - { - "name" : "Robrecht Cannoodt", - "roles" : [ - "author", - "maintainer" - ], - "info" : { - "links" : { - "email" : "robrecht@data-intuitive.com", - "github" : "rcannood", - "orcid" : "0000-0003-3641-729X", - "linkedin" : "robrechtcannoodt" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Science Engineer" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Angela Oliveira Pisco", - "roles" : [ - "author" - ], - "info" : { - "role" : "Contributor", - "links" : { - "github" : "aopisco", - "orcid" : "0000-0003-0142-2355", - "linkedin" : "aopisco" - }, - "organizations" : [ - { - "name" : "Insitro", - "href" : "https://insitro.com", - "role" : "Director of Computational Biology" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Dorien Roosen", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dorien@data-intuitive.com", - "github" : "dorien-er", - "linkedin" : "dorien-roosen" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Dries Schaumont", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dries@data-intuitive.com", - "github" : "DriesSchaumont", - "orcid" : "0000-0002-4389-0440", - "linkedin" : "dries-schaumont" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Emma Rousseau", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "emmarousseau", - "linkedin" : "emmarousseau1" - } - } - }, - { - "name" : "Jakub Majercik", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "jakub@data-intuitive.com", - "github" : "jakubmajercik", - "linkedin" : "jakubmajercik" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Bioinformatics Engineer" - } - ] - } - }, - { - "name" : "Kai Waldrant", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "KaiWaldrant", - "orcid" : "0009-0003-8555-1361", - "linkedin" : "kaiwaldrant" - } - } - }, - { - "name" : "Leïla Paquay", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "Leila011", - "linkedin" : "leilapaquay" - } - } - }, - { - "name" : "Sai Nirmayi Yasa", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "sainirmayi", - "linkedin" : "sai-nirmayi-yasa" - } - } - }, - { - "name" : "Theodoro Gasperin Terra Camargo", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "theodorogtc@gmail.com", - "github" : "tgaspe", - "linkedin" : "theodoro-gasperin-terra-camargo" - } - } - }, - { - "name" : "Toni Verbeiren", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "tverbeiren", - "linkedin" : "verbeiren" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist and CEO" - } - ] - } - }, - { - "name" : "Weiwei Schultz", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "linkedin" : "weiwei-schultz" - }, - "organizations" : [ - { - "name" : "Janssen R&D US", - "role" : "Associate Director Data Sciences" - } - ] - } - } - ], "keywords" : [ "bioinformatics", "modules", diff --git a/target/nextflow/bedtools/bedtools_pairtopair/.config.vsh.yaml b/target/nextflow/bedtools/bedtools_pairtopair/.config.vsh.yaml index 733cb22f..a4725a17 100644 --- a/target/nextflow/bedtools/bedtools_pairtopair/.config.vsh.yaml +++ b/target/nextflow/bedtools/bedtools_pairtopair/.config.vsh.yaml @@ -288,7 +288,7 @@ build_info: output: "target/nextflow/bedtools/bedtools_pairtopair" executable: "target/nextflow/bedtools/bedtools_pairtopair/main.nf" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -314,134 +314,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/nextflow/bedtools/bedtools_pairtopair/main.nf b/target/nextflow/bedtools/bedtools_pairtopair/main.nf index 77b772fe..1f0196f7 100644 --- a/target/nextflow/bedtools/bedtools_pairtopair/main.nf +++ b/target/nextflow/bedtools/bedtools_pairtopair/main.nf @@ -3361,7 +3361,7 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/bedtools/bedtools_pairtopair", "viash_version" : "0.9.4", - "git_commit" : "736f18e9887893ca830612b48744fe312fe3c696", + "git_commit" : "666507c86de9150bfbdffdb2dbabc1dbde3c3262", "git_remote" : "https://github.com/viash-hub/biobox" }, "package_config" : { @@ -3378,220 +3378,6 @@ meta = [ ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", ".engines[.type == 'docker'].target_tag := 'v0.4.0'" ], - "authors" : [ - { - "name" : "Robrecht Cannoodt", - "roles" : [ - "author", - "maintainer" - ], - "info" : { - "links" : { - "email" : "robrecht@data-intuitive.com", - "github" : "rcannood", - "orcid" : "0000-0003-3641-729X", - "linkedin" : "robrechtcannoodt" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Science Engineer" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Angela Oliveira Pisco", - "roles" : [ - "author" - ], - "info" : { - "role" : "Contributor", - "links" : { - "github" : "aopisco", - "orcid" : "0000-0003-0142-2355", - "linkedin" : "aopisco" - }, - "organizations" : [ - { - "name" : "Insitro", - "href" : "https://insitro.com", - "role" : "Director of Computational Biology" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Dorien Roosen", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dorien@data-intuitive.com", - "github" : "dorien-er", - "linkedin" : "dorien-roosen" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Dries Schaumont", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dries@data-intuitive.com", - "github" : "DriesSchaumont", - "orcid" : "0000-0002-4389-0440", - "linkedin" : "dries-schaumont" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Emma Rousseau", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "emmarousseau", - "linkedin" : "emmarousseau1" - } - } - }, - { - "name" : "Jakub Majercik", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "jakub@data-intuitive.com", - "github" : "jakubmajercik", - "linkedin" : "jakubmajercik" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Bioinformatics Engineer" - } - ] - } - }, - { - "name" : "Kai Waldrant", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "KaiWaldrant", - "orcid" : "0009-0003-8555-1361", - "linkedin" : "kaiwaldrant" - } - } - }, - { - "name" : "Leïla Paquay", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "Leila011", - "linkedin" : "leilapaquay" - } - } - }, - { - "name" : "Sai Nirmayi Yasa", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "sainirmayi", - "linkedin" : "sai-nirmayi-yasa" - } - } - }, - { - "name" : "Theodoro Gasperin Terra Camargo", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "theodorogtc@gmail.com", - "github" : "tgaspe", - "linkedin" : "theodoro-gasperin-terra-camargo" - } - } - }, - { - "name" : "Toni Verbeiren", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "tverbeiren", - "linkedin" : "verbeiren" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist and CEO" - } - ] - } - }, - { - "name" : "Weiwei Schultz", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "linkedin" : "weiwei-schultz" - }, - "organizations" : [ - { - "name" : "Janssen R&D US", - "role" : "Associate Director Data Sciences" - } - ] - } - } - ], "keywords" : [ "bioinformatics", "modules", diff --git a/target/nextflow/bedtools/bedtools_random/.config.vsh.yaml b/target/nextflow/bedtools/bedtools_random/.config.vsh.yaml index 47a5cc91..e4a7cb75 100644 --- a/target/nextflow/bedtools/bedtools_random/.config.vsh.yaml +++ b/target/nextflow/bedtools/bedtools_random/.config.vsh.yaml @@ -240,7 +240,7 @@ build_info: output: "target/nextflow/bedtools/bedtools_random" executable: "target/nextflow/bedtools/bedtools_random/main.nf" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -266,134 +266,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/nextflow/bedtools/bedtools_random/main.nf b/target/nextflow/bedtools/bedtools_random/main.nf index 074cbd85..4394bfcf 100644 --- a/target/nextflow/bedtools/bedtools_random/main.nf +++ b/target/nextflow/bedtools/bedtools_random/main.nf @@ -3313,7 +3313,7 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/bedtools/bedtools_random", "viash_version" : "0.9.4", - "git_commit" : "736f18e9887893ca830612b48744fe312fe3c696", + "git_commit" : "666507c86de9150bfbdffdb2dbabc1dbde3c3262", "git_remote" : "https://github.com/viash-hub/biobox" }, "package_config" : { @@ -3330,220 +3330,6 @@ meta = [ ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", ".engines[.type == 'docker'].target_tag := 'v0.4.0'" ], - "authors" : [ - { - "name" : "Robrecht Cannoodt", - "roles" : [ - "author", - "maintainer" - ], - "info" : { - "links" : { - "email" : "robrecht@data-intuitive.com", - "github" : "rcannood", - "orcid" : "0000-0003-3641-729X", - "linkedin" : "robrechtcannoodt" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Science Engineer" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Angela Oliveira Pisco", - "roles" : [ - "author" - ], - "info" : { - "role" : "Contributor", - "links" : { - "github" : "aopisco", - "orcid" : "0000-0003-0142-2355", - "linkedin" : "aopisco" - }, - "organizations" : [ - { - "name" : "Insitro", - "href" : "https://insitro.com", - "role" : "Director of Computational Biology" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Dorien Roosen", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dorien@data-intuitive.com", - "github" : "dorien-er", - "linkedin" : "dorien-roosen" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Dries Schaumont", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dries@data-intuitive.com", - "github" : "DriesSchaumont", - "orcid" : "0000-0002-4389-0440", - "linkedin" : "dries-schaumont" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Emma Rousseau", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "emmarousseau", - "linkedin" : "emmarousseau1" - } - } - }, - { - "name" : "Jakub Majercik", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "jakub@data-intuitive.com", - "github" : "jakubmajercik", - "linkedin" : "jakubmajercik" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Bioinformatics Engineer" - } - ] - } - }, - { - "name" : "Kai Waldrant", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "KaiWaldrant", - "orcid" : "0009-0003-8555-1361", - "linkedin" : "kaiwaldrant" - } - } - }, - { - "name" : "Leïla Paquay", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "Leila011", - "linkedin" : "leilapaquay" - } - } - }, - { - "name" : "Sai Nirmayi Yasa", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "sainirmayi", - "linkedin" : "sai-nirmayi-yasa" - } - } - }, - { - "name" : "Theodoro Gasperin Terra Camargo", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "theodorogtc@gmail.com", - "github" : "tgaspe", - "linkedin" : "theodoro-gasperin-terra-camargo" - } - } - }, - { - "name" : "Toni Verbeiren", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "tverbeiren", - "linkedin" : "verbeiren" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist and CEO" - } - ] - } - }, - { - "name" : "Weiwei Schultz", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "linkedin" : "weiwei-schultz" - }, - "organizations" : [ - { - "name" : "Janssen R&D US", - "role" : "Associate Director Data Sciences" - } - ] - } - } - ], "keywords" : [ "bioinformatics", "modules", diff --git a/target/nextflow/bedtools/bedtools_reldist/.config.vsh.yaml b/target/nextflow/bedtools/bedtools_reldist/.config.vsh.yaml index a6c73a88..f21f149a 100644 --- a/target/nextflow/bedtools/bedtools_reldist/.config.vsh.yaml +++ b/target/nextflow/bedtools/bedtools_reldist/.config.vsh.yaml @@ -221,7 +221,7 @@ build_info: output: "target/nextflow/bedtools/bedtools_reldist" executable: "target/nextflow/bedtools/bedtools_reldist/main.nf" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -247,134 +247,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/nextflow/bedtools/bedtools_reldist/main.nf b/target/nextflow/bedtools/bedtools_reldist/main.nf index 5c825e84..a6c249fb 100644 --- a/target/nextflow/bedtools/bedtools_reldist/main.nf +++ b/target/nextflow/bedtools/bedtools_reldist/main.nf @@ -3288,7 +3288,7 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/bedtools/bedtools_reldist", "viash_version" : "0.9.4", - "git_commit" : "736f18e9887893ca830612b48744fe312fe3c696", + "git_commit" : "666507c86de9150bfbdffdb2dbabc1dbde3c3262", "git_remote" : "https://github.com/viash-hub/biobox" }, "package_config" : { @@ -3305,220 +3305,6 @@ meta = [ ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", ".engines[.type == 'docker'].target_tag := 'v0.4.0'" ], - "authors" : [ - { - "name" : "Robrecht Cannoodt", - "roles" : [ - "author", - "maintainer" - ], - "info" : { - "links" : { - "email" : "robrecht@data-intuitive.com", - "github" : "rcannood", - "orcid" : "0000-0003-3641-729X", - "linkedin" : "robrechtcannoodt" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Science Engineer" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Angela Oliveira Pisco", - "roles" : [ - "author" - ], - "info" : { - "role" : "Contributor", - "links" : { - "github" : "aopisco", - "orcid" : "0000-0003-0142-2355", - "linkedin" : "aopisco" - }, - "organizations" : [ - { - "name" : "Insitro", - "href" : "https://insitro.com", - "role" : "Director of Computational Biology" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Dorien Roosen", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dorien@data-intuitive.com", - "github" : "dorien-er", - "linkedin" : "dorien-roosen" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Dries Schaumont", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dries@data-intuitive.com", - "github" : "DriesSchaumont", - "orcid" : "0000-0002-4389-0440", - "linkedin" : "dries-schaumont" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Emma Rousseau", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "emmarousseau", - "linkedin" : "emmarousseau1" - } - } - }, - { - "name" : "Jakub Majercik", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "jakub@data-intuitive.com", - "github" : "jakubmajercik", - "linkedin" : "jakubmajercik" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Bioinformatics Engineer" - } - ] - } - }, - { - "name" : "Kai Waldrant", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "KaiWaldrant", - "orcid" : "0009-0003-8555-1361", - "linkedin" : "kaiwaldrant" - } - } - }, - { - "name" : "Leïla Paquay", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "Leila011", - "linkedin" : "leilapaquay" - } - } - }, - { - "name" : "Sai Nirmayi Yasa", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "sainirmayi", - "linkedin" : "sai-nirmayi-yasa" - } - } - }, - { - "name" : "Theodoro Gasperin Terra Camargo", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "theodorogtc@gmail.com", - "github" : "tgaspe", - "linkedin" : "theodoro-gasperin-terra-camargo" - } - } - }, - { - "name" : "Toni Verbeiren", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "tverbeiren", - "linkedin" : "verbeiren" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist and CEO" - } - ] - } - }, - { - "name" : "Weiwei Schultz", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "linkedin" : "weiwei-schultz" - }, - "organizations" : [ - { - "name" : "Janssen R&D US", - "role" : "Associate Director Data Sciences" - } - ] - } - } - ], "keywords" : [ "bioinformatics", "modules", diff --git a/target/nextflow/bedtools/bedtools_sample/.config.vsh.yaml b/target/nextflow/bedtools/bedtools_sample/.config.vsh.yaml index cf2a6631..f2223d2c 100644 --- a/target/nextflow/bedtools/bedtools_sample/.config.vsh.yaml +++ b/target/nextflow/bedtools/bedtools_sample/.config.vsh.yaml @@ -293,7 +293,7 @@ build_info: output: "target/nextflow/bedtools/bedtools_sample" executable: "target/nextflow/bedtools/bedtools_sample/main.nf" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -319,134 +319,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/nextflow/bedtools/bedtools_sample/main.nf b/target/nextflow/bedtools/bedtools_sample/main.nf index dad6e850..3247b2a8 100644 --- a/target/nextflow/bedtools/bedtools_sample/main.nf +++ b/target/nextflow/bedtools/bedtools_sample/main.nf @@ -3376,7 +3376,7 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/bedtools/bedtools_sample", "viash_version" : "0.9.4", - "git_commit" : "736f18e9887893ca830612b48744fe312fe3c696", + "git_commit" : "666507c86de9150bfbdffdb2dbabc1dbde3c3262", "git_remote" : "https://github.com/viash-hub/biobox" }, "package_config" : { @@ -3393,220 +3393,6 @@ meta = [ ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", ".engines[.type == 'docker'].target_tag := 'v0.4.0'" ], - "authors" : [ - { - "name" : "Robrecht Cannoodt", - "roles" : [ - "author", - "maintainer" - ], - "info" : { - "links" : { - "email" : "robrecht@data-intuitive.com", - "github" : "rcannood", - "orcid" : "0000-0003-3641-729X", - "linkedin" : "robrechtcannoodt" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Science Engineer" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Angela Oliveira Pisco", - "roles" : [ - "author" - ], - "info" : { - "role" : "Contributor", - "links" : { - "github" : "aopisco", - "orcid" : "0000-0003-0142-2355", - "linkedin" : "aopisco" - }, - "organizations" : [ - { - "name" : "Insitro", - "href" : "https://insitro.com", - "role" : "Director of Computational Biology" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Dorien Roosen", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dorien@data-intuitive.com", - "github" : "dorien-er", - "linkedin" : "dorien-roosen" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Dries Schaumont", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dries@data-intuitive.com", - "github" : "DriesSchaumont", - "orcid" : "0000-0002-4389-0440", - "linkedin" : "dries-schaumont" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Emma Rousseau", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "emmarousseau", - "linkedin" : "emmarousseau1" - } - } - }, - { - "name" : "Jakub Majercik", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "jakub@data-intuitive.com", - "github" : "jakubmajercik", - "linkedin" : "jakubmajercik" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Bioinformatics Engineer" - } - ] - } - }, - { - "name" : "Kai Waldrant", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "KaiWaldrant", - "orcid" : "0009-0003-8555-1361", - "linkedin" : "kaiwaldrant" - } - } - }, - { - "name" : "Leïla Paquay", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "Leila011", - "linkedin" : "leilapaquay" - } - } - }, - { - "name" : "Sai Nirmayi Yasa", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "sainirmayi", - "linkedin" : "sai-nirmayi-yasa" - } - } - }, - { - "name" : "Theodoro Gasperin Terra Camargo", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "theodorogtc@gmail.com", - "github" : "tgaspe", - "linkedin" : "theodoro-gasperin-terra-camargo" - } - } - }, - { - "name" : "Toni Verbeiren", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "tverbeiren", - "linkedin" : "verbeiren" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist and CEO" - } - ] - } - }, - { - "name" : "Weiwei Schultz", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "linkedin" : "weiwei-schultz" - }, - "organizations" : [ - { - "name" : "Janssen R&D US", - "role" : "Associate Director Data Sciences" - } - ] - } - } - ], "keywords" : [ "bioinformatics", "modules", diff --git a/target/nextflow/bedtools/bedtools_shift/.config.vsh.yaml b/target/nextflow/bedtools/bedtools_shift/.config.vsh.yaml index 8b32517c..a89e1d43 100644 --- a/target/nextflow/bedtools/bedtools_shift/.config.vsh.yaml +++ b/target/nextflow/bedtools/bedtools_shift/.config.vsh.yaml @@ -273,7 +273,7 @@ build_info: output: "target/nextflow/bedtools/bedtools_shift" executable: "target/nextflow/bedtools/bedtools_shift/main.nf" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -299,134 +299,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/nextflow/bedtools/bedtools_shift/main.nf b/target/nextflow/bedtools/bedtools_shift/main.nf index 83b097ed..b828bfc2 100644 --- a/target/nextflow/bedtools/bedtools_shift/main.nf +++ b/target/nextflow/bedtools/bedtools_shift/main.nf @@ -3346,7 +3346,7 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/bedtools/bedtools_shift", "viash_version" : "0.9.4", - "git_commit" : "736f18e9887893ca830612b48744fe312fe3c696", + "git_commit" : "666507c86de9150bfbdffdb2dbabc1dbde3c3262", "git_remote" : "https://github.com/viash-hub/biobox" }, "package_config" : { @@ -3363,220 +3363,6 @@ meta = [ ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", ".engines[.type == 'docker'].target_tag := 'v0.4.0'" ], - "authors" : [ - { - "name" : "Robrecht Cannoodt", - "roles" : [ - "author", - "maintainer" - ], - "info" : { - "links" : { - "email" : "robrecht@data-intuitive.com", - "github" : "rcannood", - "orcid" : "0000-0003-3641-729X", - "linkedin" : "robrechtcannoodt" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Science Engineer" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Angela Oliveira Pisco", - "roles" : [ - "author" - ], - "info" : { - "role" : "Contributor", - "links" : { - "github" : "aopisco", - "orcid" : "0000-0003-0142-2355", - "linkedin" : "aopisco" - }, - "organizations" : [ - { - "name" : "Insitro", - "href" : "https://insitro.com", - "role" : "Director of Computational Biology" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Dorien Roosen", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dorien@data-intuitive.com", - "github" : "dorien-er", - "linkedin" : "dorien-roosen" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Dries Schaumont", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dries@data-intuitive.com", - "github" : "DriesSchaumont", - "orcid" : "0000-0002-4389-0440", - "linkedin" : "dries-schaumont" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Emma Rousseau", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "emmarousseau", - "linkedin" : "emmarousseau1" - } - } - }, - { - "name" : "Jakub Majercik", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "jakub@data-intuitive.com", - "github" : "jakubmajercik", - "linkedin" : "jakubmajercik" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Bioinformatics Engineer" - } - ] - } - }, - { - "name" : "Kai Waldrant", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "KaiWaldrant", - "orcid" : "0009-0003-8555-1361", - "linkedin" : "kaiwaldrant" - } - } - }, - { - "name" : "Leïla Paquay", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "Leila011", - "linkedin" : "leilapaquay" - } - } - }, - { - "name" : "Sai Nirmayi Yasa", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "sainirmayi", - "linkedin" : "sai-nirmayi-yasa" - } - } - }, - { - "name" : "Theodoro Gasperin Terra Camargo", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "theodorogtc@gmail.com", - "github" : "tgaspe", - "linkedin" : "theodoro-gasperin-terra-camargo" - } - } - }, - { - "name" : "Toni Verbeiren", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "tverbeiren", - "linkedin" : "verbeiren" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist and CEO" - } - ] - } - }, - { - "name" : "Weiwei Schultz", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "linkedin" : "weiwei-schultz" - }, - "organizations" : [ - { - "name" : "Janssen R&D US", - "role" : "Associate Director Data Sciences" - } - ] - } - } - ], "keywords" : [ "bioinformatics", "modules", diff --git a/target/nextflow/bedtools/bedtools_shuffle/.config.vsh.yaml b/target/nextflow/bedtools/bedtools_shuffle/.config.vsh.yaml index f0a1beba..6f05d168 100644 --- a/target/nextflow/bedtools/bedtools_shuffle/.config.vsh.yaml +++ b/target/nextflow/bedtools/bedtools_shuffle/.config.vsh.yaml @@ -348,7 +348,7 @@ build_info: output: "target/nextflow/bedtools/bedtools_shuffle" executable: "target/nextflow/bedtools/bedtools_shuffle/main.nf" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -374,134 +374,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/nextflow/bedtools/bedtools_shuffle/main.nf b/target/nextflow/bedtools/bedtools_shuffle/main.nf index 3ae73135..1eb44566 100644 --- a/target/nextflow/bedtools/bedtools_shuffle/main.nf +++ b/target/nextflow/bedtools/bedtools_shuffle/main.nf @@ -3413,7 +3413,7 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/bedtools/bedtools_shuffle", "viash_version" : "0.9.4", - "git_commit" : "736f18e9887893ca830612b48744fe312fe3c696", + "git_commit" : "666507c86de9150bfbdffdb2dbabc1dbde3c3262", "git_remote" : "https://github.com/viash-hub/biobox" }, "package_config" : { @@ -3430,220 +3430,6 @@ meta = [ ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", ".engines[.type == 'docker'].target_tag := 'v0.4.0'" ], - "authors" : [ - { - "name" : "Robrecht Cannoodt", - "roles" : [ - "author", - "maintainer" - ], - "info" : { - "links" : { - "email" : "robrecht@data-intuitive.com", - "github" : "rcannood", - "orcid" : "0000-0003-3641-729X", - "linkedin" : "robrechtcannoodt" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Science Engineer" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Angela Oliveira Pisco", - "roles" : [ - "author" - ], - "info" : { - "role" : "Contributor", - "links" : { - "github" : "aopisco", - "orcid" : "0000-0003-0142-2355", - "linkedin" : "aopisco" - }, - "organizations" : [ - { - "name" : "Insitro", - "href" : "https://insitro.com", - "role" : "Director of Computational Biology" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Dorien Roosen", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dorien@data-intuitive.com", - "github" : "dorien-er", - "linkedin" : "dorien-roosen" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Dries Schaumont", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dries@data-intuitive.com", - "github" : "DriesSchaumont", - "orcid" : "0000-0002-4389-0440", - "linkedin" : "dries-schaumont" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Emma Rousseau", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "emmarousseau", - "linkedin" : "emmarousseau1" - } - } - }, - { - "name" : "Jakub Majercik", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "jakub@data-intuitive.com", - "github" : "jakubmajercik", - "linkedin" : "jakubmajercik" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Bioinformatics Engineer" - } - ] - } - }, - { - "name" : "Kai Waldrant", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "KaiWaldrant", - "orcid" : "0009-0003-8555-1361", - "linkedin" : "kaiwaldrant" - } - } - }, - { - "name" : "Leïla Paquay", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "Leila011", - "linkedin" : "leilapaquay" - } - } - }, - { - "name" : "Sai Nirmayi Yasa", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "sainirmayi", - "linkedin" : "sai-nirmayi-yasa" - } - } - }, - { - "name" : "Theodoro Gasperin Terra Camargo", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "theodorogtc@gmail.com", - "github" : "tgaspe", - "linkedin" : "theodoro-gasperin-terra-camargo" - } - } - }, - { - "name" : "Toni Verbeiren", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "tverbeiren", - "linkedin" : "verbeiren" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist and CEO" - } - ] - } - }, - { - "name" : "Weiwei Schultz", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "linkedin" : "weiwei-schultz" - }, - "organizations" : [ - { - "name" : "Janssen R&D US", - "role" : "Associate Director Data Sciences" - } - ] - } - } - ], "keywords" : [ "bioinformatics", "modules", diff --git a/target/nextflow/bedtools/bedtools_slop/.config.vsh.yaml b/target/nextflow/bedtools/bedtools_slop/.config.vsh.yaml index 36007f82..1b3af9c9 100644 --- a/target/nextflow/bedtools/bedtools_slop/.config.vsh.yaml +++ b/target/nextflow/bedtools/bedtools_slop/.config.vsh.yaml @@ -288,7 +288,7 @@ build_info: output: "target/nextflow/bedtools/bedtools_slop" executable: "target/nextflow/bedtools/bedtools_slop/main.nf" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -314,134 +314,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/nextflow/bedtools/bedtools_slop/main.nf b/target/nextflow/bedtools/bedtools_slop/main.nf index 2c4488ba..ed3285f1 100644 --- a/target/nextflow/bedtools/bedtools_slop/main.nf +++ b/target/nextflow/bedtools/bedtools_slop/main.nf @@ -3356,7 +3356,7 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/bedtools/bedtools_slop", "viash_version" : "0.9.4", - "git_commit" : "736f18e9887893ca830612b48744fe312fe3c696", + "git_commit" : "666507c86de9150bfbdffdb2dbabc1dbde3c3262", "git_remote" : "https://github.com/viash-hub/biobox" }, "package_config" : { @@ -3373,220 +3373,6 @@ meta = [ ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", ".engines[.type == 'docker'].target_tag := 'v0.4.0'" ], - "authors" : [ - { - "name" : "Robrecht Cannoodt", - "roles" : [ - "author", - "maintainer" - ], - "info" : { - "links" : { - "email" : "robrecht@data-intuitive.com", - "github" : "rcannood", - "orcid" : "0000-0003-3641-729X", - "linkedin" : "robrechtcannoodt" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Science Engineer" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Angela Oliveira Pisco", - "roles" : [ - "author" - ], - "info" : { - "role" : "Contributor", - "links" : { - "github" : "aopisco", - "orcid" : "0000-0003-0142-2355", - "linkedin" : "aopisco" - }, - "organizations" : [ - { - "name" : "Insitro", - "href" : "https://insitro.com", - "role" : "Director of Computational Biology" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Dorien Roosen", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dorien@data-intuitive.com", - "github" : "dorien-er", - "linkedin" : "dorien-roosen" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Dries Schaumont", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dries@data-intuitive.com", - "github" : "DriesSchaumont", - "orcid" : "0000-0002-4389-0440", - "linkedin" : "dries-schaumont" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Emma Rousseau", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "emmarousseau", - "linkedin" : "emmarousseau1" - } - } - }, - { - "name" : "Jakub Majercik", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "jakub@data-intuitive.com", - "github" : "jakubmajercik", - "linkedin" : "jakubmajercik" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Bioinformatics Engineer" - } - ] - } - }, - { - "name" : "Kai Waldrant", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "KaiWaldrant", - "orcid" : "0009-0003-8555-1361", - "linkedin" : "kaiwaldrant" - } - } - }, - { - "name" : "Leïla Paquay", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "Leila011", - "linkedin" : "leilapaquay" - } - } - }, - { - "name" : "Sai Nirmayi Yasa", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "sainirmayi", - "linkedin" : "sai-nirmayi-yasa" - } - } - }, - { - "name" : "Theodoro Gasperin Terra Camargo", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "theodorogtc@gmail.com", - "github" : "tgaspe", - "linkedin" : "theodoro-gasperin-terra-camargo" - } - } - }, - { - "name" : "Toni Verbeiren", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "tverbeiren", - "linkedin" : "verbeiren" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist and CEO" - } - ] - } - }, - { - "name" : "Weiwei Schultz", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "linkedin" : "weiwei-schultz" - }, - "organizations" : [ - { - "name" : "Janssen R&D US", - "role" : "Associate Director Data Sciences" - } - ] - } - } - ], "keywords" : [ "bioinformatics", "modules", diff --git a/target/nextflow/bedtools/bedtools_sort/.config.vsh.yaml b/target/nextflow/bedtools/bedtools_sort/.config.vsh.yaml index 0175aa64..757c15c3 100644 --- a/target/nextflow/bedtools/bedtools_sort/.config.vsh.yaml +++ b/target/nextflow/bedtools/bedtools_sort/.config.vsh.yaml @@ -276,7 +276,7 @@ build_info: output: "target/nextflow/bedtools/bedtools_sort" executable: "target/nextflow/bedtools/bedtools_sort/main.nf" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -302,134 +302,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/nextflow/bedtools/bedtools_sort/main.nf b/target/nextflow/bedtools/bedtools_sort/main.nf index add34b97..95fde003 100644 --- a/target/nextflow/bedtools/bedtools_sort/main.nf +++ b/target/nextflow/bedtools/bedtools_sort/main.nf @@ -3354,7 +3354,7 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/bedtools/bedtools_sort", "viash_version" : "0.9.4", - "git_commit" : "736f18e9887893ca830612b48744fe312fe3c696", + "git_commit" : "666507c86de9150bfbdffdb2dbabc1dbde3c3262", "git_remote" : "https://github.com/viash-hub/biobox" }, "package_config" : { @@ -3371,220 +3371,6 @@ meta = [ ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", ".engines[.type == 'docker'].target_tag := 'v0.4.0'" ], - "authors" : [ - { - "name" : "Robrecht Cannoodt", - "roles" : [ - "author", - "maintainer" - ], - "info" : { - "links" : { - "email" : "robrecht@data-intuitive.com", - "github" : "rcannood", - "orcid" : "0000-0003-3641-729X", - "linkedin" : "robrechtcannoodt" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Science Engineer" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Angela Oliveira Pisco", - "roles" : [ - "author" - ], - "info" : { - "role" : "Contributor", - "links" : { - "github" : "aopisco", - "orcid" : "0000-0003-0142-2355", - "linkedin" : "aopisco" - }, - "organizations" : [ - { - "name" : "Insitro", - "href" : "https://insitro.com", - "role" : "Director of Computational Biology" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Dorien Roosen", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dorien@data-intuitive.com", - "github" : "dorien-er", - "linkedin" : "dorien-roosen" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Dries Schaumont", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dries@data-intuitive.com", - "github" : "DriesSchaumont", - "orcid" : "0000-0002-4389-0440", - "linkedin" : "dries-schaumont" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Emma Rousseau", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "emmarousseau", - "linkedin" : "emmarousseau1" - } - } - }, - { - "name" : "Jakub Majercik", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "jakub@data-intuitive.com", - "github" : "jakubmajercik", - "linkedin" : "jakubmajercik" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Bioinformatics Engineer" - } - ] - } - }, - { - "name" : "Kai Waldrant", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "KaiWaldrant", - "orcid" : "0009-0003-8555-1361", - "linkedin" : "kaiwaldrant" - } - } - }, - { - "name" : "Leïla Paquay", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "Leila011", - "linkedin" : "leilapaquay" - } - } - }, - { - "name" : "Sai Nirmayi Yasa", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "sainirmayi", - "linkedin" : "sai-nirmayi-yasa" - } - } - }, - { - "name" : "Theodoro Gasperin Terra Camargo", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "theodorogtc@gmail.com", - "github" : "tgaspe", - "linkedin" : "theodoro-gasperin-terra-camargo" - } - } - }, - { - "name" : "Toni Verbeiren", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "tverbeiren", - "linkedin" : "verbeiren" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist and CEO" - } - ] - } - }, - { - "name" : "Weiwei Schultz", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "linkedin" : "weiwei-schultz" - }, - "organizations" : [ - { - "name" : "Janssen R&D US", - "role" : "Associate Director Data Sciences" - } - ] - } - } - ], "keywords" : [ "bioinformatics", "modules", diff --git a/target/nextflow/bedtools/bedtools_spacing/.config.vsh.yaml b/target/nextflow/bedtools/bedtools_spacing/.config.vsh.yaml index 14ab1f11..4f457f80 100644 --- a/target/nextflow/bedtools/bedtools_spacing/.config.vsh.yaml +++ b/target/nextflow/bedtools/bedtools_spacing/.config.vsh.yaml @@ -239,7 +239,7 @@ build_info: output: "target/nextflow/bedtools/bedtools_spacing" executable: "target/nextflow/bedtools/bedtools_spacing/main.nf" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -265,134 +265,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/nextflow/bedtools/bedtools_spacing/main.nf b/target/nextflow/bedtools/bedtools_spacing/main.nf index 8c366dd6..d6e99a0e 100644 --- a/target/nextflow/bedtools/bedtools_spacing/main.nf +++ b/target/nextflow/bedtools/bedtools_spacing/main.nf @@ -3312,7 +3312,7 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/bedtools/bedtools_spacing", "viash_version" : "0.9.4", - "git_commit" : "736f18e9887893ca830612b48744fe312fe3c696", + "git_commit" : "666507c86de9150bfbdffdb2dbabc1dbde3c3262", "git_remote" : "https://github.com/viash-hub/biobox" }, "package_config" : { @@ -3329,220 +3329,6 @@ meta = [ ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", ".engines[.type == 'docker'].target_tag := 'v0.4.0'" ], - "authors" : [ - { - "name" : "Robrecht Cannoodt", - "roles" : [ - "author", - "maintainer" - ], - "info" : { - "links" : { - "email" : "robrecht@data-intuitive.com", - "github" : "rcannood", - "orcid" : "0000-0003-3641-729X", - "linkedin" : "robrechtcannoodt" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Science Engineer" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Angela Oliveira Pisco", - "roles" : [ - "author" - ], - "info" : { - "role" : "Contributor", - "links" : { - "github" : "aopisco", - "orcid" : "0000-0003-0142-2355", - "linkedin" : "aopisco" - }, - "organizations" : [ - { - "name" : "Insitro", - "href" : "https://insitro.com", - "role" : "Director of Computational Biology" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Dorien Roosen", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dorien@data-intuitive.com", - "github" : "dorien-er", - "linkedin" : "dorien-roosen" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Dries Schaumont", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dries@data-intuitive.com", - "github" : "DriesSchaumont", - "orcid" : "0000-0002-4389-0440", - "linkedin" : "dries-schaumont" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Emma Rousseau", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "emmarousseau", - "linkedin" : "emmarousseau1" - } - } - }, - { - "name" : "Jakub Majercik", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "jakub@data-intuitive.com", - "github" : "jakubmajercik", - "linkedin" : "jakubmajercik" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Bioinformatics Engineer" - } - ] - } - }, - { - "name" : "Kai Waldrant", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "KaiWaldrant", - "orcid" : "0009-0003-8555-1361", - "linkedin" : "kaiwaldrant" - } - } - }, - { - "name" : "Leïla Paquay", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "Leila011", - "linkedin" : "leilapaquay" - } - } - }, - { - "name" : "Sai Nirmayi Yasa", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "sainirmayi", - "linkedin" : "sai-nirmayi-yasa" - } - } - }, - { - "name" : "Theodoro Gasperin Terra Camargo", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "theodorogtc@gmail.com", - "github" : "tgaspe", - "linkedin" : "theodoro-gasperin-terra-camargo" - } - } - }, - { - "name" : "Toni Verbeiren", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "tverbeiren", - "linkedin" : "verbeiren" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist and CEO" - } - ] - } - }, - { - "name" : "Weiwei Schultz", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "linkedin" : "weiwei-schultz" - }, - "organizations" : [ - { - "name" : "Janssen R&D US", - "role" : "Associate Director Data Sciences" - } - ] - } - } - ], "keywords" : [ "bioinformatics", "modules", diff --git a/target/nextflow/bedtools/bedtools_split/.config.vsh.yaml b/target/nextflow/bedtools/bedtools_split/.config.vsh.yaml index 86d1c0d6..0c2091b4 100644 --- a/target/nextflow/bedtools/bedtools_split/.config.vsh.yaml +++ b/target/nextflow/bedtools/bedtools_split/.config.vsh.yaml @@ -243,7 +243,7 @@ build_info: output: "target/nextflow/bedtools/bedtools_split" executable: "target/nextflow/bedtools/bedtools_split/main.nf" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -269,134 +269,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/nextflow/bedtools/bedtools_split/main.nf b/target/nextflow/bedtools/bedtools_split/main.nf index d15a2fe4..3a94d8aa 100644 --- a/target/nextflow/bedtools/bedtools_split/main.nf +++ b/target/nextflow/bedtools/bedtools_split/main.nf @@ -3312,7 +3312,7 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/bedtools/bedtools_split", "viash_version" : "0.9.4", - "git_commit" : "736f18e9887893ca830612b48744fe312fe3c696", + "git_commit" : "666507c86de9150bfbdffdb2dbabc1dbde3c3262", "git_remote" : "https://github.com/viash-hub/biobox" }, "package_config" : { @@ -3329,220 +3329,6 @@ meta = [ ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", ".engines[.type == 'docker'].target_tag := 'v0.4.0'" ], - "authors" : [ - { - "name" : "Robrecht Cannoodt", - "roles" : [ - "author", - "maintainer" - ], - "info" : { - "links" : { - "email" : "robrecht@data-intuitive.com", - "github" : "rcannood", - "orcid" : "0000-0003-3641-729X", - "linkedin" : "robrechtcannoodt" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Science Engineer" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Angela Oliveira Pisco", - "roles" : [ - "author" - ], - "info" : { - "role" : "Contributor", - "links" : { - "github" : "aopisco", - "orcid" : "0000-0003-0142-2355", - "linkedin" : "aopisco" - }, - "organizations" : [ - { - "name" : "Insitro", - "href" : "https://insitro.com", - "role" : "Director of Computational Biology" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Dorien Roosen", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dorien@data-intuitive.com", - "github" : "dorien-er", - "linkedin" : "dorien-roosen" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Dries Schaumont", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dries@data-intuitive.com", - "github" : "DriesSchaumont", - "orcid" : "0000-0002-4389-0440", - "linkedin" : "dries-schaumont" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Emma Rousseau", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "emmarousseau", - "linkedin" : "emmarousseau1" - } - } - }, - { - "name" : "Jakub Majercik", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "jakub@data-intuitive.com", - "github" : "jakubmajercik", - "linkedin" : "jakubmajercik" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Bioinformatics Engineer" - } - ] - } - }, - { - "name" : "Kai Waldrant", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "KaiWaldrant", - "orcid" : "0009-0003-8555-1361", - "linkedin" : "kaiwaldrant" - } - } - }, - { - "name" : "Leïla Paquay", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "Leila011", - "linkedin" : "leilapaquay" - } - } - }, - { - "name" : "Sai Nirmayi Yasa", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "sainirmayi", - "linkedin" : "sai-nirmayi-yasa" - } - } - }, - { - "name" : "Theodoro Gasperin Terra Camargo", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "theodorogtc@gmail.com", - "github" : "tgaspe", - "linkedin" : "theodoro-gasperin-terra-camargo" - } - } - }, - { - "name" : "Toni Verbeiren", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "tverbeiren", - "linkedin" : "verbeiren" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist and CEO" - } - ] - } - }, - { - "name" : "Weiwei Schultz", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "linkedin" : "weiwei-schultz" - }, - "organizations" : [ - { - "name" : "Janssen R&D US", - "role" : "Associate Director Data Sciences" - } - ] - } - } - ], "keywords" : [ "bioinformatics", "modules", diff --git a/target/nextflow/bedtools/bedtools_subtract/.config.vsh.yaml b/target/nextflow/bedtools/bedtools_subtract/.config.vsh.yaml index 8d409a7d..e139fafd 100644 --- a/target/nextflow/bedtools/bedtools_subtract/.config.vsh.yaml +++ b/target/nextflow/bedtools/bedtools_subtract/.config.vsh.yaml @@ -423,7 +423,7 @@ build_info: output: "target/nextflow/bedtools/bedtools_subtract" executable: "target/nextflow/bedtools/bedtools_subtract/main.nf" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -449,134 +449,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/nextflow/bedtools/bedtools_subtract/main.nf b/target/nextflow/bedtools/bedtools_subtract/main.nf index e86dd946..5576eb52 100644 --- a/target/nextflow/bedtools/bedtools_subtract/main.nf +++ b/target/nextflow/bedtools/bedtools_subtract/main.nf @@ -3490,7 +3490,7 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/bedtools/bedtools_subtract", "viash_version" : "0.9.4", - "git_commit" : "736f18e9887893ca830612b48744fe312fe3c696", + "git_commit" : "666507c86de9150bfbdffdb2dbabc1dbde3c3262", "git_remote" : "https://github.com/viash-hub/biobox" }, "package_config" : { @@ -3507,220 +3507,6 @@ meta = [ ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", ".engines[.type == 'docker'].target_tag := 'v0.4.0'" ], - "authors" : [ - { - "name" : "Robrecht Cannoodt", - "roles" : [ - "author", - "maintainer" - ], - "info" : { - "links" : { - "email" : "robrecht@data-intuitive.com", - "github" : "rcannood", - "orcid" : "0000-0003-3641-729X", - "linkedin" : "robrechtcannoodt" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Science Engineer" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Angela Oliveira Pisco", - "roles" : [ - "author" - ], - "info" : { - "role" : "Contributor", - "links" : { - "github" : "aopisco", - "orcid" : "0000-0003-0142-2355", - "linkedin" : "aopisco" - }, - "organizations" : [ - { - "name" : "Insitro", - "href" : "https://insitro.com", - "role" : "Director of Computational Biology" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Dorien Roosen", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dorien@data-intuitive.com", - "github" : "dorien-er", - "linkedin" : "dorien-roosen" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Dries Schaumont", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dries@data-intuitive.com", - "github" : "DriesSchaumont", - "orcid" : "0000-0002-4389-0440", - "linkedin" : "dries-schaumont" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Emma Rousseau", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "emmarousseau", - "linkedin" : "emmarousseau1" - } - } - }, - { - "name" : "Jakub Majercik", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "jakub@data-intuitive.com", - "github" : "jakubmajercik", - "linkedin" : "jakubmajercik" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Bioinformatics Engineer" - } - ] - } - }, - { - "name" : "Kai Waldrant", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "KaiWaldrant", - "orcid" : "0009-0003-8555-1361", - "linkedin" : "kaiwaldrant" - } - } - }, - { - "name" : "Leïla Paquay", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "Leila011", - "linkedin" : "leilapaquay" - } - } - }, - { - "name" : "Sai Nirmayi Yasa", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "sainirmayi", - "linkedin" : "sai-nirmayi-yasa" - } - } - }, - { - "name" : "Theodoro Gasperin Terra Camargo", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "theodorogtc@gmail.com", - "github" : "tgaspe", - "linkedin" : "theodoro-gasperin-terra-camargo" - } - } - }, - { - "name" : "Toni Verbeiren", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "tverbeiren", - "linkedin" : "verbeiren" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist and CEO" - } - ] - } - }, - { - "name" : "Weiwei Schultz", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "linkedin" : "weiwei-schultz" - }, - "organizations" : [ - { - "name" : "Janssen R&D US", - "role" : "Associate Director Data Sciences" - } - ] - } - } - ], "keywords" : [ "bioinformatics", "modules", diff --git a/target/nextflow/bedtools/bedtools_summary/.config.vsh.yaml b/target/nextflow/bedtools/bedtools_summary/.config.vsh.yaml index 5e9520e9..4e0e5e69 100644 --- a/target/nextflow/bedtools/bedtools_summary/.config.vsh.yaml +++ b/target/nextflow/bedtools/bedtools_summary/.config.vsh.yaml @@ -211,7 +211,7 @@ build_info: output: "target/nextflow/bedtools/bedtools_summary" executable: "target/nextflow/bedtools/bedtools_summary/main.nf" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -237,134 +237,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/nextflow/bedtools/bedtools_summary/main.nf b/target/nextflow/bedtools/bedtools_summary/main.nf index 5fedd77b..66c94cd5 100644 --- a/target/nextflow/bedtools/bedtools_summary/main.nf +++ b/target/nextflow/bedtools/bedtools_summary/main.nf @@ -3280,7 +3280,7 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/bedtools/bedtools_summary", "viash_version" : "0.9.4", - "git_commit" : "736f18e9887893ca830612b48744fe312fe3c696", + "git_commit" : "666507c86de9150bfbdffdb2dbabc1dbde3c3262", "git_remote" : "https://github.com/viash-hub/biobox" }, "package_config" : { @@ -3297,220 +3297,6 @@ meta = [ ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", ".engines[.type == 'docker'].target_tag := 'v0.4.0'" ], - "authors" : [ - { - "name" : "Robrecht Cannoodt", - "roles" : [ - "author", - "maintainer" - ], - "info" : { - "links" : { - "email" : "robrecht@data-intuitive.com", - "github" : "rcannood", - "orcid" : "0000-0003-3641-729X", - "linkedin" : "robrechtcannoodt" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Science Engineer" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Angela Oliveira Pisco", - "roles" : [ - "author" - ], - "info" : { - "role" : "Contributor", - "links" : { - "github" : "aopisco", - "orcid" : "0000-0003-0142-2355", - "linkedin" : "aopisco" - }, - "organizations" : [ - { - "name" : "Insitro", - "href" : "https://insitro.com", - "role" : "Director of Computational Biology" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Dorien Roosen", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dorien@data-intuitive.com", - "github" : "dorien-er", - "linkedin" : "dorien-roosen" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Dries Schaumont", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dries@data-intuitive.com", - "github" : "DriesSchaumont", - "orcid" : "0000-0002-4389-0440", - "linkedin" : "dries-schaumont" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Emma Rousseau", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "emmarousseau", - "linkedin" : "emmarousseau1" - } - } - }, - { - "name" : "Jakub Majercik", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "jakub@data-intuitive.com", - "github" : "jakubmajercik", - "linkedin" : "jakubmajercik" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Bioinformatics Engineer" - } - ] - } - }, - { - "name" : "Kai Waldrant", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "KaiWaldrant", - "orcid" : "0009-0003-8555-1361", - "linkedin" : "kaiwaldrant" - } - } - }, - { - "name" : "Leïla Paquay", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "Leila011", - "linkedin" : "leilapaquay" - } - } - }, - { - "name" : "Sai Nirmayi Yasa", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "sainirmayi", - "linkedin" : "sai-nirmayi-yasa" - } - } - }, - { - "name" : "Theodoro Gasperin Terra Camargo", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "theodorogtc@gmail.com", - "github" : "tgaspe", - "linkedin" : "theodoro-gasperin-terra-camargo" - } - } - }, - { - "name" : "Toni Verbeiren", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "tverbeiren", - "linkedin" : "verbeiren" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist and CEO" - } - ] - } - }, - { - "name" : "Weiwei Schultz", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "linkedin" : "weiwei-schultz" - }, - "organizations" : [ - { - "name" : "Janssen R&D US", - "role" : "Associate Director Data Sciences" - } - ] - } - } - ], "keywords" : [ "bioinformatics", "modules", diff --git a/target/nextflow/bedtools/bedtools_tag/.config.vsh.yaml b/target/nextflow/bedtools/bedtools_tag/.config.vsh.yaml index c3bf7469..f0dd1492 100644 --- a/target/nextflow/bedtools/bedtools_tag/.config.vsh.yaml +++ b/target/nextflow/bedtools/bedtools_tag/.config.vsh.yaml @@ -320,7 +320,7 @@ build_info: output: "target/nextflow/bedtools/bedtools_tag" executable: "target/nextflow/bedtools/bedtools_tag/main.nf" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -346,134 +346,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/nextflow/bedtools/bedtools_tag/main.nf b/target/nextflow/bedtools/bedtools_tag/main.nf index 1133fa78..c2b34bf6 100644 --- a/target/nextflow/bedtools/bedtools_tag/main.nf +++ b/target/nextflow/bedtools/bedtools_tag/main.nf @@ -3380,7 +3380,7 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/bedtools/bedtools_tag", "viash_version" : "0.9.4", - "git_commit" : "736f18e9887893ca830612b48744fe312fe3c696", + "git_commit" : "666507c86de9150bfbdffdb2dbabc1dbde3c3262", "git_remote" : "https://github.com/viash-hub/biobox" }, "package_config" : { @@ -3397,220 +3397,6 @@ meta = [ ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", ".engines[.type == 'docker'].target_tag := 'v0.4.0'" ], - "authors" : [ - { - "name" : "Robrecht Cannoodt", - "roles" : [ - "author", - "maintainer" - ], - "info" : { - "links" : { - "email" : "robrecht@data-intuitive.com", - "github" : "rcannood", - "orcid" : "0000-0003-3641-729X", - "linkedin" : "robrechtcannoodt" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Science Engineer" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Angela Oliveira Pisco", - "roles" : [ - "author" - ], - "info" : { - "role" : "Contributor", - "links" : { - "github" : "aopisco", - "orcid" : "0000-0003-0142-2355", - "linkedin" : "aopisco" - }, - "organizations" : [ - { - "name" : "Insitro", - "href" : "https://insitro.com", - "role" : "Director of Computational Biology" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Dorien Roosen", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dorien@data-intuitive.com", - "github" : "dorien-er", - "linkedin" : "dorien-roosen" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Dries Schaumont", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dries@data-intuitive.com", - "github" : "DriesSchaumont", - "orcid" : "0000-0002-4389-0440", - "linkedin" : "dries-schaumont" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Emma Rousseau", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "emmarousseau", - "linkedin" : "emmarousseau1" - } - } - }, - { - "name" : "Jakub Majercik", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "jakub@data-intuitive.com", - "github" : "jakubmajercik", - "linkedin" : "jakubmajercik" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Bioinformatics Engineer" - } - ] - } - }, - { - "name" : "Kai Waldrant", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "KaiWaldrant", - "orcid" : "0009-0003-8555-1361", - "linkedin" : "kaiwaldrant" - } - } - }, - { - "name" : "Leïla Paquay", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "Leila011", - "linkedin" : "leilapaquay" - } - } - }, - { - "name" : "Sai Nirmayi Yasa", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "sainirmayi", - "linkedin" : "sai-nirmayi-yasa" - } - } - }, - { - "name" : "Theodoro Gasperin Terra Camargo", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "theodorogtc@gmail.com", - "github" : "tgaspe", - "linkedin" : "theodoro-gasperin-terra-camargo" - } - } - }, - { - "name" : "Toni Verbeiren", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "tverbeiren", - "linkedin" : "verbeiren" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist and CEO" - } - ] - } - }, - { - "name" : "Weiwei Schultz", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "linkedin" : "weiwei-schultz" - }, - "organizations" : [ - { - "name" : "Janssen R&D US", - "role" : "Associate Director Data Sciences" - } - ] - } - } - ], "keywords" : [ "bioinformatics", "modules", diff --git a/target/nextflow/bedtools/bedtools_unionbedg/.config.vsh.yaml b/target/nextflow/bedtools/bedtools_unionbedg/.config.vsh.yaml index 7cd21e9f..f0a57142 100644 --- a/target/nextflow/bedtools/bedtools_unionbedg/.config.vsh.yaml +++ b/target/nextflow/bedtools/bedtools_unionbedg/.config.vsh.yaml @@ -201,7 +201,7 @@ build_info: output: "target/nextflow/bedtools/bedtools_unionbedg" executable: "target/nextflow/bedtools/bedtools_unionbedg/main.nf" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -227,134 +227,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/nextflow/bedtools/bedtools_unionbedg/main.nf b/target/nextflow/bedtools/bedtools_unionbedg/main.nf index 20bd86b2..01ab27e9 100644 --- a/target/nextflow/bedtools/bedtools_unionbedg/main.nf +++ b/target/nextflow/bedtools/bedtools_unionbedg/main.nf @@ -3272,7 +3272,7 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/bedtools/bedtools_unionbedg", "viash_version" : "0.9.4", - "git_commit" : "736f18e9887893ca830612b48744fe312fe3c696", + "git_commit" : "666507c86de9150bfbdffdb2dbabc1dbde3c3262", "git_remote" : "https://github.com/viash-hub/biobox" }, "package_config" : { @@ -3289,220 +3289,6 @@ meta = [ ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", ".engines[.type == 'docker'].target_tag := 'v0.4.0'" ], - "authors" : [ - { - "name" : "Robrecht Cannoodt", - "roles" : [ - "author", - "maintainer" - ], - "info" : { - "links" : { - "email" : "robrecht@data-intuitive.com", - "github" : "rcannood", - "orcid" : "0000-0003-3641-729X", - "linkedin" : "robrechtcannoodt" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Science Engineer" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Angela Oliveira Pisco", - "roles" : [ - "author" - ], - "info" : { - "role" : "Contributor", - "links" : { - "github" : "aopisco", - "orcid" : "0000-0003-0142-2355", - "linkedin" : "aopisco" - }, - "organizations" : [ - { - "name" : "Insitro", - "href" : "https://insitro.com", - "role" : "Director of Computational Biology" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Dorien Roosen", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dorien@data-intuitive.com", - "github" : "dorien-er", - "linkedin" : "dorien-roosen" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Dries Schaumont", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dries@data-intuitive.com", - "github" : "DriesSchaumont", - "orcid" : "0000-0002-4389-0440", - "linkedin" : "dries-schaumont" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Emma Rousseau", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "emmarousseau", - "linkedin" : "emmarousseau1" - } - } - }, - { - "name" : "Jakub Majercik", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "jakub@data-intuitive.com", - "github" : "jakubmajercik", - "linkedin" : "jakubmajercik" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Bioinformatics Engineer" - } - ] - } - }, - { - "name" : "Kai Waldrant", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "KaiWaldrant", - "orcid" : "0009-0003-8555-1361", - "linkedin" : "kaiwaldrant" - } - } - }, - { - "name" : "Leïla Paquay", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "Leila011", - "linkedin" : "leilapaquay" - } - } - }, - { - "name" : "Sai Nirmayi Yasa", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "sainirmayi", - "linkedin" : "sai-nirmayi-yasa" - } - } - }, - { - "name" : "Theodoro Gasperin Terra Camargo", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "theodorogtc@gmail.com", - "github" : "tgaspe", - "linkedin" : "theodoro-gasperin-terra-camargo" - } - } - }, - { - "name" : "Toni Verbeiren", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "tverbeiren", - "linkedin" : "verbeiren" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist and CEO" - } - ] - } - }, - { - "name" : "Weiwei Schultz", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "linkedin" : "weiwei-schultz" - }, - "organizations" : [ - { - "name" : "Janssen R&D US", - "role" : "Associate Director Data Sciences" - } - ] - } - } - ], "keywords" : [ "bioinformatics", "modules", diff --git a/target/nextflow/bedtools/bedtools_window/.config.vsh.yaml b/target/nextflow/bedtools/bedtools_window/.config.vsh.yaml index 0219cee1..9612fd15 100644 --- a/target/nextflow/bedtools/bedtools_window/.config.vsh.yaml +++ b/target/nextflow/bedtools/bedtools_window/.config.vsh.yaml @@ -366,7 +366,7 @@ build_info: output: "target/nextflow/bedtools/bedtools_window" executable: "target/nextflow/bedtools/bedtools_window/main.nf" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -392,134 +392,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/nextflow/bedtools/bedtools_window/main.nf b/target/nextflow/bedtools/bedtools_window/main.nf index 47eba149..3f1cd14c 100644 --- a/target/nextflow/bedtools/bedtools_window/main.nf +++ b/target/nextflow/bedtools/bedtools_window/main.nf @@ -3437,7 +3437,7 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/bedtools/bedtools_window", "viash_version" : "0.9.4", - "git_commit" : "736f18e9887893ca830612b48744fe312fe3c696", + "git_commit" : "666507c86de9150bfbdffdb2dbabc1dbde3c3262", "git_remote" : "https://github.com/viash-hub/biobox" }, "package_config" : { @@ -3454,220 +3454,6 @@ meta = [ ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", ".engines[.type == 'docker'].target_tag := 'v0.4.0'" ], - "authors" : [ - { - "name" : "Robrecht Cannoodt", - "roles" : [ - "author", - "maintainer" - ], - "info" : { - "links" : { - "email" : "robrecht@data-intuitive.com", - "github" : "rcannood", - "orcid" : "0000-0003-3641-729X", - "linkedin" : "robrechtcannoodt" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Science Engineer" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Angela Oliveira Pisco", - "roles" : [ - "author" - ], - "info" : { - "role" : "Contributor", - "links" : { - "github" : "aopisco", - "orcid" : "0000-0003-0142-2355", - "linkedin" : "aopisco" - }, - "organizations" : [ - { - "name" : "Insitro", - "href" : "https://insitro.com", - "role" : "Director of Computational Biology" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Dorien Roosen", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dorien@data-intuitive.com", - "github" : "dorien-er", - "linkedin" : "dorien-roosen" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Dries Schaumont", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dries@data-intuitive.com", - "github" : "DriesSchaumont", - "orcid" : "0000-0002-4389-0440", - "linkedin" : "dries-schaumont" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Emma Rousseau", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "emmarousseau", - "linkedin" : "emmarousseau1" - } - } - }, - { - "name" : "Jakub Majercik", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "jakub@data-intuitive.com", - "github" : "jakubmajercik", - "linkedin" : "jakubmajercik" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Bioinformatics Engineer" - } - ] - } - }, - { - "name" : "Kai Waldrant", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "KaiWaldrant", - "orcid" : "0009-0003-8555-1361", - "linkedin" : "kaiwaldrant" - } - } - }, - { - "name" : "Leïla Paquay", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "Leila011", - "linkedin" : "leilapaquay" - } - } - }, - { - "name" : "Sai Nirmayi Yasa", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "sainirmayi", - "linkedin" : "sai-nirmayi-yasa" - } - } - }, - { - "name" : "Theodoro Gasperin Terra Camargo", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "theodorogtc@gmail.com", - "github" : "tgaspe", - "linkedin" : "theodoro-gasperin-terra-camargo" - } - } - }, - { - "name" : "Toni Verbeiren", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "tverbeiren", - "linkedin" : "verbeiren" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist and CEO" - } - ] - } - }, - { - "name" : "Weiwei Schultz", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "linkedin" : "weiwei-schultz" - }, - "organizations" : [ - { - "name" : "Janssen R&D US", - "role" : "Associate Director Data Sciences" - } - ] - } - } - ], "keywords" : [ "bioinformatics", "modules", diff --git a/target/nextflow/bowtie2/bowtie2_align/.config.vsh.yaml b/target/nextflow/bowtie2/bowtie2_align/.config.vsh.yaml index 56752600..0debe998 100644 --- a/target/nextflow/bowtie2/bowtie2_align/.config.vsh.yaml +++ b/target/nextflow/bowtie2/bowtie2_align/.config.vsh.yaml @@ -844,7 +844,7 @@ build_info: output: "target/nextflow/bowtie2/bowtie2_align" executable: "target/nextflow/bowtie2/bowtie2_align/main.nf" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -870,134 +870,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/nextflow/bowtie2/bowtie2_align/main.nf b/target/nextflow/bowtie2/bowtie2_align/main.nf index fce7dd04..08818901 100644 --- a/target/nextflow/bowtie2/bowtie2_align/main.nf +++ b/target/nextflow/bowtie2/bowtie2_align/main.nf @@ -4081,7 +4081,7 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/bowtie2/bowtie2_align", "viash_version" : "0.9.4", - "git_commit" : "736f18e9887893ca830612b48744fe312fe3c696", + "git_commit" : "666507c86de9150bfbdffdb2dbabc1dbde3c3262", "git_remote" : "https://github.com/viash-hub/biobox" }, "package_config" : { @@ -4098,220 +4098,6 @@ meta = [ ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", ".engines[.type == 'docker'].target_tag := 'v0.4.0'" ], - "authors" : [ - { - "name" : "Robrecht Cannoodt", - "roles" : [ - "author", - "maintainer" - ], - "info" : { - "links" : { - "email" : "robrecht@data-intuitive.com", - "github" : "rcannood", - "orcid" : "0000-0003-3641-729X", - "linkedin" : "robrechtcannoodt" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Science Engineer" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Angela Oliveira Pisco", - "roles" : [ - "author" - ], - "info" : { - "role" : "Contributor", - "links" : { - "github" : "aopisco", - "orcid" : "0000-0003-0142-2355", - "linkedin" : "aopisco" - }, - "organizations" : [ - { - "name" : "Insitro", - "href" : "https://insitro.com", - "role" : "Director of Computational Biology" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Dorien Roosen", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dorien@data-intuitive.com", - "github" : "dorien-er", - "linkedin" : "dorien-roosen" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Dries Schaumont", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dries@data-intuitive.com", - "github" : "DriesSchaumont", - "orcid" : "0000-0002-4389-0440", - "linkedin" : "dries-schaumont" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Emma Rousseau", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "emmarousseau", - "linkedin" : "emmarousseau1" - } - } - }, - { - "name" : "Jakub Majercik", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "jakub@data-intuitive.com", - "github" : "jakubmajercik", - "linkedin" : "jakubmajercik" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Bioinformatics Engineer" - } - ] - } - }, - { - "name" : "Kai Waldrant", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "KaiWaldrant", - "orcid" : "0009-0003-8555-1361", - "linkedin" : "kaiwaldrant" - } - } - }, - { - "name" : "Leïla Paquay", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "Leila011", - "linkedin" : "leilapaquay" - } - } - }, - { - "name" : "Sai Nirmayi Yasa", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "sainirmayi", - "linkedin" : "sai-nirmayi-yasa" - } - } - }, - { - "name" : "Theodoro Gasperin Terra Camargo", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "theodorogtc@gmail.com", - "github" : "tgaspe", - "linkedin" : "theodoro-gasperin-terra-camargo" - } - } - }, - { - "name" : "Toni Verbeiren", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "tverbeiren", - "linkedin" : "verbeiren" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist and CEO" - } - ] - } - }, - { - "name" : "Weiwei Schultz", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "linkedin" : "weiwei-schultz" - }, - "organizations" : [ - { - "name" : "Janssen R&D US", - "role" : "Associate Director Data Sciences" - } - ] - } - } - ], "keywords" : [ "bioinformatics", "modules", diff --git a/target/nextflow/bowtie2/bowtie2_build/.config.vsh.yaml b/target/nextflow/bowtie2/bowtie2_build/.config.vsh.yaml index 77d3f49b..4843a89e 100644 --- a/target/nextflow/bowtie2/bowtie2_build/.config.vsh.yaml +++ b/target/nextflow/bowtie2/bowtie2_build/.config.vsh.yaml @@ -307,7 +307,7 @@ build_info: output: "target/nextflow/bowtie2/bowtie2_build" executable: "target/nextflow/bowtie2/bowtie2_build/main.nf" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -333,134 +333,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/nextflow/bowtie2/bowtie2_build/main.nf b/target/nextflow/bowtie2/bowtie2_build/main.nf index 5eaaf0d2..3a6aaff5 100644 --- a/target/nextflow/bowtie2/bowtie2_build/main.nf +++ b/target/nextflow/bowtie2/bowtie2_build/main.nf @@ -3418,7 +3418,7 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/bowtie2/bowtie2_build", "viash_version" : "0.9.4", - "git_commit" : "736f18e9887893ca830612b48744fe312fe3c696", + "git_commit" : "666507c86de9150bfbdffdb2dbabc1dbde3c3262", "git_remote" : "https://github.com/viash-hub/biobox" }, "package_config" : { @@ -3435,220 +3435,6 @@ meta = [ ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", ".engines[.type == 'docker'].target_tag := 'v0.4.0'" ], - "authors" : [ - { - "name" : "Robrecht Cannoodt", - "roles" : [ - "author", - "maintainer" - ], - "info" : { - "links" : { - "email" : "robrecht@data-intuitive.com", - "github" : "rcannood", - "orcid" : "0000-0003-3641-729X", - "linkedin" : "robrechtcannoodt" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Science Engineer" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Angela Oliveira Pisco", - "roles" : [ - "author" - ], - "info" : { - "role" : "Contributor", - "links" : { - "github" : "aopisco", - "orcid" : "0000-0003-0142-2355", - "linkedin" : "aopisco" - }, - "organizations" : [ - { - "name" : "Insitro", - "href" : "https://insitro.com", - "role" : "Director of Computational Biology" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Dorien Roosen", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dorien@data-intuitive.com", - "github" : "dorien-er", - "linkedin" : "dorien-roosen" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Dries Schaumont", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dries@data-intuitive.com", - "github" : "DriesSchaumont", - "orcid" : "0000-0002-4389-0440", - "linkedin" : "dries-schaumont" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Emma Rousseau", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "emmarousseau", - "linkedin" : "emmarousseau1" - } - } - }, - { - "name" : "Jakub Majercik", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "jakub@data-intuitive.com", - "github" : "jakubmajercik", - "linkedin" : "jakubmajercik" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Bioinformatics Engineer" - } - ] - } - }, - { - "name" : "Kai Waldrant", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "KaiWaldrant", - "orcid" : "0009-0003-8555-1361", - "linkedin" : "kaiwaldrant" - } - } - }, - { - "name" : "Leïla Paquay", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "Leila011", - "linkedin" : "leilapaquay" - } - } - }, - { - "name" : "Sai Nirmayi Yasa", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "sainirmayi", - "linkedin" : "sai-nirmayi-yasa" - } - } - }, - { - "name" : "Theodoro Gasperin Terra Camargo", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "theodorogtc@gmail.com", - "github" : "tgaspe", - "linkedin" : "theodoro-gasperin-terra-camargo" - } - } - }, - { - "name" : "Toni Verbeiren", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "tverbeiren", - "linkedin" : "verbeiren" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist and CEO" - } - ] - } - }, - { - "name" : "Weiwei Schultz", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "linkedin" : "weiwei-schultz" - }, - "organizations" : [ - { - "name" : "Janssen R&D US", - "role" : "Associate Director Data Sciences" - } - ] - } - } - ], "keywords" : [ "bioinformatics", "modules", diff --git a/target/nextflow/bowtie2/bowtie2_inspect/.config.vsh.yaml b/target/nextflow/bowtie2/bowtie2_inspect/.config.vsh.yaml index ab62cc4c..d85b15df 100644 --- a/target/nextflow/bowtie2/bowtie2_inspect/.config.vsh.yaml +++ b/target/nextflow/bowtie2/bowtie2_inspect/.config.vsh.yaml @@ -219,7 +219,7 @@ build_info: output: "target/nextflow/bowtie2/bowtie2_inspect" executable: "target/nextflow/bowtie2/bowtie2_inspect/main.nf" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -245,134 +245,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/nextflow/bowtie2/bowtie2_inspect/main.nf b/target/nextflow/bowtie2/bowtie2_inspect/main.nf index 1f8e8126..7eda192b 100644 --- a/target/nextflow/bowtie2/bowtie2_inspect/main.nf +++ b/target/nextflow/bowtie2/bowtie2_inspect/main.nf @@ -3315,7 +3315,7 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/bowtie2/bowtie2_inspect", "viash_version" : "0.9.4", - "git_commit" : "736f18e9887893ca830612b48744fe312fe3c696", + "git_commit" : "666507c86de9150bfbdffdb2dbabc1dbde3c3262", "git_remote" : "https://github.com/viash-hub/biobox" }, "package_config" : { @@ -3332,220 +3332,6 @@ meta = [ ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", ".engines[.type == 'docker'].target_tag := 'v0.4.0'" ], - "authors" : [ - { - "name" : "Robrecht Cannoodt", - "roles" : [ - "author", - "maintainer" - ], - "info" : { - "links" : { - "email" : "robrecht@data-intuitive.com", - "github" : "rcannood", - "orcid" : "0000-0003-3641-729X", - "linkedin" : "robrechtcannoodt" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Science Engineer" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Angela Oliveira Pisco", - "roles" : [ - "author" - ], - "info" : { - "role" : "Contributor", - "links" : { - "github" : "aopisco", - "orcid" : "0000-0003-0142-2355", - "linkedin" : "aopisco" - }, - "organizations" : [ - { - "name" : "Insitro", - "href" : "https://insitro.com", - "role" : "Director of Computational Biology" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Dorien Roosen", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dorien@data-intuitive.com", - "github" : "dorien-er", - "linkedin" : "dorien-roosen" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Dries Schaumont", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dries@data-intuitive.com", - "github" : "DriesSchaumont", - "orcid" : "0000-0002-4389-0440", - "linkedin" : "dries-schaumont" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Emma Rousseau", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "emmarousseau", - "linkedin" : "emmarousseau1" - } - } - }, - { - "name" : "Jakub Majercik", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "jakub@data-intuitive.com", - "github" : "jakubmajercik", - "linkedin" : "jakubmajercik" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Bioinformatics Engineer" - } - ] - } - }, - { - "name" : "Kai Waldrant", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "KaiWaldrant", - "orcid" : "0009-0003-8555-1361", - "linkedin" : "kaiwaldrant" - } - } - }, - { - "name" : "Leïla Paquay", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "Leila011", - "linkedin" : "leilapaquay" - } - } - }, - { - "name" : "Sai Nirmayi Yasa", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "sainirmayi", - "linkedin" : "sai-nirmayi-yasa" - } - } - }, - { - "name" : "Theodoro Gasperin Terra Camargo", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "theodorogtc@gmail.com", - "github" : "tgaspe", - "linkedin" : "theodoro-gasperin-terra-camargo" - } - } - }, - { - "name" : "Toni Verbeiren", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "tverbeiren", - "linkedin" : "verbeiren" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist and CEO" - } - ] - } - }, - { - "name" : "Weiwei Schultz", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "linkedin" : "weiwei-schultz" - }, - "organizations" : [ - { - "name" : "Janssen R&D US", - "role" : "Associate Director Data Sciences" - } - ] - } - } - ], "keywords" : [ "bioinformatics", "modules", diff --git a/target/nextflow/busco/busco_download_datasets/.config.vsh.yaml b/target/nextflow/busco/busco_download_datasets/.config.vsh.yaml index ad915244..25249568 100644 --- a/target/nextflow/busco/busco_download_datasets/.config.vsh.yaml +++ b/target/nextflow/busco/busco_download_datasets/.config.vsh.yaml @@ -161,7 +161,7 @@ build_info: output: "target/nextflow/busco/busco_download_datasets" executable: "target/nextflow/busco/busco_download_datasets/main.nf" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -187,134 +187,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/nextflow/busco/busco_download_datasets/main.nf b/target/nextflow/busco/busco_download_datasets/main.nf index fc3674fd..f84f6afd 100644 --- a/target/nextflow/busco/busco_download_datasets/main.nf +++ b/target/nextflow/busco/busco_download_datasets/main.nf @@ -3241,7 +3241,7 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/busco/busco_download_datasets", "viash_version" : "0.9.4", - "git_commit" : "736f18e9887893ca830612b48744fe312fe3c696", + "git_commit" : "666507c86de9150bfbdffdb2dbabc1dbde3c3262", "git_remote" : "https://github.com/viash-hub/biobox" }, "package_config" : { @@ -3258,220 +3258,6 @@ meta = [ ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", ".engines[.type == 'docker'].target_tag := 'v0.4.0'" ], - "authors" : [ - { - "name" : "Robrecht Cannoodt", - "roles" : [ - "author", - "maintainer" - ], - "info" : { - "links" : { - "email" : "robrecht@data-intuitive.com", - "github" : "rcannood", - "orcid" : "0000-0003-3641-729X", - "linkedin" : "robrechtcannoodt" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Science Engineer" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Angela Oliveira Pisco", - "roles" : [ - "author" - ], - "info" : { - "role" : "Contributor", - "links" : { - "github" : "aopisco", - "orcid" : "0000-0003-0142-2355", - "linkedin" : "aopisco" - }, - "organizations" : [ - { - "name" : "Insitro", - "href" : "https://insitro.com", - "role" : "Director of Computational Biology" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Dorien Roosen", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dorien@data-intuitive.com", - "github" : "dorien-er", - "linkedin" : "dorien-roosen" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Dries Schaumont", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dries@data-intuitive.com", - "github" : "DriesSchaumont", - "orcid" : "0000-0002-4389-0440", - "linkedin" : "dries-schaumont" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Emma Rousseau", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "emmarousseau", - "linkedin" : "emmarousseau1" - } - } - }, - { - "name" : "Jakub Majercik", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "jakub@data-intuitive.com", - "github" : "jakubmajercik", - "linkedin" : "jakubmajercik" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Bioinformatics Engineer" - } - ] - } - }, - { - "name" : "Kai Waldrant", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "KaiWaldrant", - "orcid" : "0009-0003-8555-1361", - "linkedin" : "kaiwaldrant" - } - } - }, - { - "name" : "Leïla Paquay", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "Leila011", - "linkedin" : "leilapaquay" - } - } - }, - { - "name" : "Sai Nirmayi Yasa", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "sainirmayi", - "linkedin" : "sai-nirmayi-yasa" - } - } - }, - { - "name" : "Theodoro Gasperin Terra Camargo", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "theodorogtc@gmail.com", - "github" : "tgaspe", - "linkedin" : "theodoro-gasperin-terra-camargo" - } - } - }, - { - "name" : "Toni Verbeiren", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "tverbeiren", - "linkedin" : "verbeiren" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist and CEO" - } - ] - } - }, - { - "name" : "Weiwei Schultz", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "linkedin" : "weiwei-schultz" - }, - "organizations" : [ - { - "name" : "Janssen R&D US", - "role" : "Associate Director Data Sciences" - } - ] - } - } - ], "keywords" : [ "bioinformatics", "modules", diff --git a/target/nextflow/busco/busco_list_datasets/.config.vsh.yaml b/target/nextflow/busco/busco_list_datasets/.config.vsh.yaml index 350b7be6..12faeeb4 100644 --- a/target/nextflow/busco/busco_list_datasets/.config.vsh.yaml +++ b/target/nextflow/busco/busco_list_datasets/.config.vsh.yaml @@ -148,7 +148,7 @@ build_info: output: "target/nextflow/busco/busco_list_datasets" executable: "target/nextflow/busco/busco_list_datasets/main.nf" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -174,134 +174,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/nextflow/busco/busco_list_datasets/main.nf b/target/nextflow/busco/busco_list_datasets/main.nf index 2c363f33..98e9ff8f 100644 --- a/target/nextflow/busco/busco_list_datasets/main.nf +++ b/target/nextflow/busco/busco_list_datasets/main.nf @@ -3227,7 +3227,7 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/busco/busco_list_datasets", "viash_version" : "0.9.4", - "git_commit" : "736f18e9887893ca830612b48744fe312fe3c696", + "git_commit" : "666507c86de9150bfbdffdb2dbabc1dbde3c3262", "git_remote" : "https://github.com/viash-hub/biobox" }, "package_config" : { @@ -3244,220 +3244,6 @@ meta = [ ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", ".engines[.type == 'docker'].target_tag := 'v0.4.0'" ], - "authors" : [ - { - "name" : "Robrecht Cannoodt", - "roles" : [ - "author", - "maintainer" - ], - "info" : { - "links" : { - "email" : "robrecht@data-intuitive.com", - "github" : "rcannood", - "orcid" : "0000-0003-3641-729X", - "linkedin" : "robrechtcannoodt" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Science Engineer" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Angela Oliveira Pisco", - "roles" : [ - "author" - ], - "info" : { - "role" : "Contributor", - "links" : { - "github" : "aopisco", - "orcid" : "0000-0003-0142-2355", - "linkedin" : "aopisco" - }, - "organizations" : [ - { - "name" : "Insitro", - "href" : "https://insitro.com", - "role" : "Director of Computational Biology" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Dorien Roosen", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dorien@data-intuitive.com", - "github" : "dorien-er", - "linkedin" : "dorien-roosen" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Dries Schaumont", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dries@data-intuitive.com", - "github" : "DriesSchaumont", - "orcid" : "0000-0002-4389-0440", - "linkedin" : "dries-schaumont" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Emma Rousseau", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "emmarousseau", - "linkedin" : "emmarousseau1" - } - } - }, - { - "name" : "Jakub Majercik", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "jakub@data-intuitive.com", - "github" : "jakubmajercik", - "linkedin" : "jakubmajercik" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Bioinformatics Engineer" - } - ] - } - }, - { - "name" : "Kai Waldrant", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "KaiWaldrant", - "orcid" : "0009-0003-8555-1361", - "linkedin" : "kaiwaldrant" - } - } - }, - { - "name" : "Leïla Paquay", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "Leila011", - "linkedin" : "leilapaquay" - } - } - }, - { - "name" : "Sai Nirmayi Yasa", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "sainirmayi", - "linkedin" : "sai-nirmayi-yasa" - } - } - }, - { - "name" : "Theodoro Gasperin Terra Camargo", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "theodorogtc@gmail.com", - "github" : "tgaspe", - "linkedin" : "theodoro-gasperin-terra-camargo" - } - } - }, - { - "name" : "Toni Verbeiren", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "tverbeiren", - "linkedin" : "verbeiren" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist and CEO" - } - ] - } - }, - { - "name" : "Weiwei Schultz", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "linkedin" : "weiwei-schultz" - }, - "organizations" : [ - { - "name" : "Janssen R&D US", - "role" : "Associate Director Data Sciences" - } - ] - } - } - ], "keywords" : [ "bioinformatics", "modules", diff --git a/target/nextflow/busco/busco_run/.config.vsh.yaml b/target/nextflow/busco/busco_run/.config.vsh.yaml index 2e5a269e..996d32cd 100644 --- a/target/nextflow/busco/busco_run/.config.vsh.yaml +++ b/target/nextflow/busco/busco_run/.config.vsh.yaml @@ -426,7 +426,7 @@ build_info: output: "target/nextflow/busco/busco_run" executable: "target/nextflow/busco/busco_run/main.nf" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -452,134 +452,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/nextflow/busco/busco_run/main.nf b/target/nextflow/busco/busco_run/main.nf index d248d99a..2c96a32b 100644 --- a/target/nextflow/busco/busco_run/main.nf +++ b/target/nextflow/busco/busco_run/main.nf @@ -3539,7 +3539,7 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/busco/busco_run", "viash_version" : "0.9.4", - "git_commit" : "736f18e9887893ca830612b48744fe312fe3c696", + "git_commit" : "666507c86de9150bfbdffdb2dbabc1dbde3c3262", "git_remote" : "https://github.com/viash-hub/biobox" }, "package_config" : { @@ -3556,220 +3556,6 @@ meta = [ ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", ".engines[.type == 'docker'].target_tag := 'v0.4.0'" ], - "authors" : [ - { - "name" : "Robrecht Cannoodt", - "roles" : [ - "author", - "maintainer" - ], - "info" : { - "links" : { - "email" : "robrecht@data-intuitive.com", - "github" : "rcannood", - "orcid" : "0000-0003-3641-729X", - "linkedin" : "robrechtcannoodt" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Science Engineer" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Angela Oliveira Pisco", - "roles" : [ - "author" - ], - "info" : { - "role" : "Contributor", - "links" : { - "github" : "aopisco", - "orcid" : "0000-0003-0142-2355", - "linkedin" : "aopisco" - }, - "organizations" : [ - { - "name" : "Insitro", - "href" : "https://insitro.com", - "role" : "Director of Computational Biology" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Dorien Roosen", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dorien@data-intuitive.com", - "github" : "dorien-er", - "linkedin" : "dorien-roosen" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Dries Schaumont", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dries@data-intuitive.com", - "github" : "DriesSchaumont", - "orcid" : "0000-0002-4389-0440", - "linkedin" : "dries-schaumont" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Emma Rousseau", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "emmarousseau", - "linkedin" : "emmarousseau1" - } - } - }, - { - "name" : "Jakub Majercik", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "jakub@data-intuitive.com", - "github" : "jakubmajercik", - "linkedin" : "jakubmajercik" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Bioinformatics Engineer" - } - ] - } - }, - { - "name" : "Kai Waldrant", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "KaiWaldrant", - "orcid" : "0009-0003-8555-1361", - "linkedin" : "kaiwaldrant" - } - } - }, - { - "name" : "Leïla Paquay", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "Leila011", - "linkedin" : "leilapaquay" - } - } - }, - { - "name" : "Sai Nirmayi Yasa", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "sainirmayi", - "linkedin" : "sai-nirmayi-yasa" - } - } - }, - { - "name" : "Theodoro Gasperin Terra Camargo", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "theodorogtc@gmail.com", - "github" : "tgaspe", - "linkedin" : "theodoro-gasperin-terra-camargo" - } - } - }, - { - "name" : "Toni Verbeiren", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "tverbeiren", - "linkedin" : "verbeiren" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist and CEO" - } - ] - } - }, - { - "name" : "Weiwei Schultz", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "linkedin" : "weiwei-schultz" - }, - "organizations" : [ - { - "name" : "Janssen R&D US", - "role" : "Associate Director Data Sciences" - } - ] - } - } - ], "keywords" : [ "bioinformatics", "modules", diff --git a/target/nextflow/bwa/bwa_aln/.config.vsh.yaml b/target/nextflow/bwa/bwa_aln/.config.vsh.yaml index 96971c23..1de51088 100644 --- a/target/nextflow/bwa/bwa_aln/.config.vsh.yaml +++ b/target/nextflow/bwa/bwa_aln/.config.vsh.yaml @@ -426,7 +426,7 @@ build_info: output: "target/nextflow/bwa/bwa_aln" executable: "target/nextflow/bwa/bwa_aln/main.nf" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -452,134 +452,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/nextflow/bwa/bwa_aln/main.nf b/target/nextflow/bwa/bwa_aln/main.nf index 10a9ef7d..e9909c47 100644 --- a/target/nextflow/bwa/bwa_aln/main.nf +++ b/target/nextflow/bwa/bwa_aln/main.nf @@ -3588,7 +3588,7 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/bwa/bwa_aln", "viash_version" : "0.9.4", - "git_commit" : "736f18e9887893ca830612b48744fe312fe3c696", + "git_commit" : "666507c86de9150bfbdffdb2dbabc1dbde3c3262", "git_remote" : "https://github.com/viash-hub/biobox" }, "package_config" : { @@ -3605,220 +3605,6 @@ meta = [ ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", ".engines[.type == 'docker'].target_tag := 'v0.4.0'" ], - "authors" : [ - { - "name" : "Robrecht Cannoodt", - "roles" : [ - "author", - "maintainer" - ], - "info" : { - "links" : { - "email" : "robrecht@data-intuitive.com", - "github" : "rcannood", - "orcid" : "0000-0003-3641-729X", - "linkedin" : "robrechtcannoodt" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Science Engineer" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Angela Oliveira Pisco", - "roles" : [ - "author" - ], - "info" : { - "role" : "Contributor", - "links" : { - "github" : "aopisco", - "orcid" : "0000-0003-0142-2355", - "linkedin" : "aopisco" - }, - "organizations" : [ - { - "name" : "Insitro", - "href" : "https://insitro.com", - "role" : "Director of Computational Biology" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Dorien Roosen", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dorien@data-intuitive.com", - "github" : "dorien-er", - "linkedin" : "dorien-roosen" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Dries Schaumont", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dries@data-intuitive.com", - "github" : "DriesSchaumont", - "orcid" : "0000-0002-4389-0440", - "linkedin" : "dries-schaumont" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Emma Rousseau", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "emmarousseau", - "linkedin" : "emmarousseau1" - } - } - }, - { - "name" : "Jakub Majercik", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "jakub@data-intuitive.com", - "github" : "jakubmajercik", - "linkedin" : "jakubmajercik" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Bioinformatics Engineer" - } - ] - } - }, - { - "name" : "Kai Waldrant", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "KaiWaldrant", - "orcid" : "0009-0003-8555-1361", - "linkedin" : "kaiwaldrant" - } - } - }, - { - "name" : "Leïla Paquay", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "Leila011", - "linkedin" : "leilapaquay" - } - } - }, - { - "name" : "Sai Nirmayi Yasa", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "sainirmayi", - "linkedin" : "sai-nirmayi-yasa" - } - } - }, - { - "name" : "Theodoro Gasperin Terra Camargo", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "theodorogtc@gmail.com", - "github" : "tgaspe", - "linkedin" : "theodoro-gasperin-terra-camargo" - } - } - }, - { - "name" : "Toni Verbeiren", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "tverbeiren", - "linkedin" : "verbeiren" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist and CEO" - } - ] - } - }, - { - "name" : "Weiwei Schultz", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "linkedin" : "weiwei-schultz" - }, - "organizations" : [ - { - "name" : "Janssen R&D US", - "role" : "Associate Director Data Sciences" - } - ] - } - } - ], "keywords" : [ "bioinformatics", "modules", diff --git a/target/nextflow/bwa/bwa_index/.config.vsh.yaml b/target/nextflow/bwa/bwa_index/.config.vsh.yaml index 8990521f..98ed9bad 100644 --- a/target/nextflow/bwa/bwa_index/.config.vsh.yaml +++ b/target/nextflow/bwa/bwa_index/.config.vsh.yaml @@ -221,7 +221,7 @@ build_info: output: "target/nextflow/bwa/bwa_index" executable: "target/nextflow/bwa/bwa_index/main.nf" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -247,134 +247,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/nextflow/bwa/bwa_index/main.nf b/target/nextflow/bwa/bwa_index/main.nf index 80242708..b85d7512 100644 --- a/target/nextflow/bwa/bwa_index/main.nf +++ b/target/nextflow/bwa/bwa_index/main.nf @@ -3324,7 +3324,7 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/bwa/bwa_index", "viash_version" : "0.9.4", - "git_commit" : "736f18e9887893ca830612b48744fe312fe3c696", + "git_commit" : "666507c86de9150bfbdffdb2dbabc1dbde3c3262", "git_remote" : "https://github.com/viash-hub/biobox" }, "package_config" : { @@ -3341,220 +3341,6 @@ meta = [ ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", ".engines[.type == 'docker'].target_tag := 'v0.4.0'" ], - "authors" : [ - { - "name" : "Robrecht Cannoodt", - "roles" : [ - "author", - "maintainer" - ], - "info" : { - "links" : { - "email" : "robrecht@data-intuitive.com", - "github" : "rcannood", - "orcid" : "0000-0003-3641-729X", - "linkedin" : "robrechtcannoodt" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Science Engineer" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Angela Oliveira Pisco", - "roles" : [ - "author" - ], - "info" : { - "role" : "Contributor", - "links" : { - "github" : "aopisco", - "orcid" : "0000-0003-0142-2355", - "linkedin" : "aopisco" - }, - "organizations" : [ - { - "name" : "Insitro", - "href" : "https://insitro.com", - "role" : "Director of Computational Biology" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Dorien Roosen", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dorien@data-intuitive.com", - "github" : "dorien-er", - "linkedin" : "dorien-roosen" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Dries Schaumont", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dries@data-intuitive.com", - "github" : "DriesSchaumont", - "orcid" : "0000-0002-4389-0440", - "linkedin" : "dries-schaumont" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Emma Rousseau", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "emmarousseau", - "linkedin" : "emmarousseau1" - } - } - }, - { - "name" : "Jakub Majercik", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "jakub@data-intuitive.com", - "github" : "jakubmajercik", - "linkedin" : "jakubmajercik" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Bioinformatics Engineer" - } - ] - } - }, - { - "name" : "Kai Waldrant", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "KaiWaldrant", - "orcid" : "0009-0003-8555-1361", - "linkedin" : "kaiwaldrant" - } - } - }, - { - "name" : "Leïla Paquay", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "Leila011", - "linkedin" : "leilapaquay" - } - } - }, - { - "name" : "Sai Nirmayi Yasa", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "sainirmayi", - "linkedin" : "sai-nirmayi-yasa" - } - } - }, - { - "name" : "Theodoro Gasperin Terra Camargo", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "theodorogtc@gmail.com", - "github" : "tgaspe", - "linkedin" : "theodoro-gasperin-terra-camargo" - } - } - }, - { - "name" : "Toni Verbeiren", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "tverbeiren", - "linkedin" : "verbeiren" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist and CEO" - } - ] - } - }, - { - "name" : "Weiwei Schultz", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "linkedin" : "weiwei-schultz" - }, - "organizations" : [ - { - "name" : "Janssen R&D US", - "role" : "Associate Director Data Sciences" - } - ] - } - } - ], "keywords" : [ "bioinformatics", "modules", diff --git a/target/nextflow/bwa/bwa_mem/.config.vsh.yaml b/target/nextflow/bwa/bwa_mem/.config.vsh.yaml index 7f32e257..081f719a 100644 --- a/target/nextflow/bwa/bwa_mem/.config.vsh.yaml +++ b/target/nextflow/bwa/bwa_mem/.config.vsh.yaml @@ -587,7 +587,7 @@ build_info: output: "target/nextflow/bwa/bwa_mem" executable: "target/nextflow/bwa/bwa_mem/main.nf" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -613,134 +613,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/nextflow/bwa/bwa_mem/main.nf b/target/nextflow/bwa/bwa_mem/main.nf index 6b584b70..c541f73b 100644 --- a/target/nextflow/bwa/bwa_mem/main.nf +++ b/target/nextflow/bwa/bwa_mem/main.nf @@ -3779,7 +3779,7 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/bwa/bwa_mem", "viash_version" : "0.9.4", - "git_commit" : "736f18e9887893ca830612b48744fe312fe3c696", + "git_commit" : "666507c86de9150bfbdffdb2dbabc1dbde3c3262", "git_remote" : "https://github.com/viash-hub/biobox" }, "package_config" : { @@ -3796,220 +3796,6 @@ meta = [ ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", ".engines[.type == 'docker'].target_tag := 'v0.4.0'" ], - "authors" : [ - { - "name" : "Robrecht Cannoodt", - "roles" : [ - "author", - "maintainer" - ], - "info" : { - "links" : { - "email" : "robrecht@data-intuitive.com", - "github" : "rcannood", - "orcid" : "0000-0003-3641-729X", - "linkedin" : "robrechtcannoodt" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Science Engineer" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Angela Oliveira Pisco", - "roles" : [ - "author" - ], - "info" : { - "role" : "Contributor", - "links" : { - "github" : "aopisco", - "orcid" : "0000-0003-0142-2355", - "linkedin" : "aopisco" - }, - "organizations" : [ - { - "name" : "Insitro", - "href" : "https://insitro.com", - "role" : "Director of Computational Biology" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Dorien Roosen", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dorien@data-intuitive.com", - "github" : "dorien-er", - "linkedin" : "dorien-roosen" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Dries Schaumont", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dries@data-intuitive.com", - "github" : "DriesSchaumont", - "orcid" : "0000-0002-4389-0440", - "linkedin" : "dries-schaumont" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Emma Rousseau", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "emmarousseau", - "linkedin" : "emmarousseau1" - } - } - }, - { - "name" : "Jakub Majercik", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "jakub@data-intuitive.com", - "github" : "jakubmajercik", - "linkedin" : "jakubmajercik" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Bioinformatics Engineer" - } - ] - } - }, - { - "name" : "Kai Waldrant", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "KaiWaldrant", - "orcid" : "0009-0003-8555-1361", - "linkedin" : "kaiwaldrant" - } - } - }, - { - "name" : "Leïla Paquay", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "Leila011", - "linkedin" : "leilapaquay" - } - } - }, - { - "name" : "Sai Nirmayi Yasa", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "sainirmayi", - "linkedin" : "sai-nirmayi-yasa" - } - } - }, - { - "name" : "Theodoro Gasperin Terra Camargo", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "theodorogtc@gmail.com", - "github" : "tgaspe", - "linkedin" : "theodoro-gasperin-terra-camargo" - } - } - }, - { - "name" : "Toni Verbeiren", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "tverbeiren", - "linkedin" : "verbeiren" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist and CEO" - } - ] - } - }, - { - "name" : "Weiwei Schultz", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "linkedin" : "weiwei-schultz" - }, - "organizations" : [ - { - "name" : "Janssen R&D US", - "role" : "Associate Director Data Sciences" - } - ] - } - } - ], "keywords" : [ "bioinformatics", "modules", diff --git a/target/nextflow/bwa/bwa_sampe/.config.vsh.yaml b/target/nextflow/bwa/bwa_sampe/.config.vsh.yaml index 2c893442..f7f7937c 100644 --- a/target/nextflow/bwa/bwa_sampe/.config.vsh.yaml +++ b/target/nextflow/bwa/bwa_sampe/.config.vsh.yaml @@ -327,7 +327,7 @@ build_info: output: "target/nextflow/bwa/bwa_sampe" executable: "target/nextflow/bwa/bwa_sampe/main.nf" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -353,134 +353,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/nextflow/bwa/bwa_sampe/main.nf b/target/nextflow/bwa/bwa_sampe/main.nf index 6ed30932..daa9e9c2 100644 --- a/target/nextflow/bwa/bwa_sampe/main.nf +++ b/target/nextflow/bwa/bwa_sampe/main.nf @@ -3460,7 +3460,7 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/bwa/bwa_sampe", "viash_version" : "0.9.4", - "git_commit" : "736f18e9887893ca830612b48744fe312fe3c696", + "git_commit" : "666507c86de9150bfbdffdb2dbabc1dbde3c3262", "git_remote" : "https://github.com/viash-hub/biobox" }, "package_config" : { @@ -3477,220 +3477,6 @@ meta = [ ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", ".engines[.type == 'docker'].target_tag := 'v0.4.0'" ], - "authors" : [ - { - "name" : "Robrecht Cannoodt", - "roles" : [ - "author", - "maintainer" - ], - "info" : { - "links" : { - "email" : "robrecht@data-intuitive.com", - "github" : "rcannood", - "orcid" : "0000-0003-3641-729X", - "linkedin" : "robrechtcannoodt" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Science Engineer" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Angela Oliveira Pisco", - "roles" : [ - "author" - ], - "info" : { - "role" : "Contributor", - "links" : { - "github" : "aopisco", - "orcid" : "0000-0003-0142-2355", - "linkedin" : "aopisco" - }, - "organizations" : [ - { - "name" : "Insitro", - "href" : "https://insitro.com", - "role" : "Director of Computational Biology" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Dorien Roosen", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dorien@data-intuitive.com", - "github" : "dorien-er", - "linkedin" : "dorien-roosen" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Dries Schaumont", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dries@data-intuitive.com", - "github" : "DriesSchaumont", - "orcid" : "0000-0002-4389-0440", - "linkedin" : "dries-schaumont" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Emma Rousseau", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "emmarousseau", - "linkedin" : "emmarousseau1" - } - } - }, - { - "name" : "Jakub Majercik", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "jakub@data-intuitive.com", - "github" : "jakubmajercik", - "linkedin" : "jakubmajercik" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Bioinformatics Engineer" - } - ] - } - }, - { - "name" : "Kai Waldrant", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "KaiWaldrant", - "orcid" : "0009-0003-8555-1361", - "linkedin" : "kaiwaldrant" - } - } - }, - { - "name" : "Leïla Paquay", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "Leila011", - "linkedin" : "leilapaquay" - } - } - }, - { - "name" : "Sai Nirmayi Yasa", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "sainirmayi", - "linkedin" : "sai-nirmayi-yasa" - } - } - }, - { - "name" : "Theodoro Gasperin Terra Camargo", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "theodorogtc@gmail.com", - "github" : "tgaspe", - "linkedin" : "theodoro-gasperin-terra-camargo" - } - } - }, - { - "name" : "Toni Verbeiren", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "tverbeiren", - "linkedin" : "verbeiren" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist and CEO" - } - ] - } - }, - { - "name" : "Weiwei Schultz", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "linkedin" : "weiwei-schultz" - }, - "organizations" : [ - { - "name" : "Janssen R&D US", - "role" : "Associate Director Data Sciences" - } - ] - } - } - ], "keywords" : [ "bioinformatics", "modules", diff --git a/target/nextflow/bwa/bwa_samse/.config.vsh.yaml b/target/nextflow/bwa/bwa_samse/.config.vsh.yaml index 32d7b714..7e38fcfc 100644 --- a/target/nextflow/bwa/bwa_samse/.config.vsh.yaml +++ b/target/nextflow/bwa/bwa_samse/.config.vsh.yaml @@ -232,7 +232,7 @@ build_info: output: "target/nextflow/bwa/bwa_samse" executable: "target/nextflow/bwa/bwa_samse/main.nf" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -258,134 +258,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/nextflow/bwa/bwa_samse/main.nf b/target/nextflow/bwa/bwa_samse/main.nf index 284314f7..5c60998f 100644 --- a/target/nextflow/bwa/bwa_samse/main.nf +++ b/target/nextflow/bwa/bwa_samse/main.nf @@ -3340,7 +3340,7 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/bwa/bwa_samse", "viash_version" : "0.9.4", - "git_commit" : "736f18e9887893ca830612b48744fe312fe3c696", + "git_commit" : "666507c86de9150bfbdffdb2dbabc1dbde3c3262", "git_remote" : "https://github.com/viash-hub/biobox" }, "package_config" : { @@ -3357,220 +3357,6 @@ meta = [ ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", ".engines[.type == 'docker'].target_tag := 'v0.4.0'" ], - "authors" : [ - { - "name" : "Robrecht Cannoodt", - "roles" : [ - "author", - "maintainer" - ], - "info" : { - "links" : { - "email" : "robrecht@data-intuitive.com", - "github" : "rcannood", - "orcid" : "0000-0003-3641-729X", - "linkedin" : "robrechtcannoodt" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Science Engineer" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Angela Oliveira Pisco", - "roles" : [ - "author" - ], - "info" : { - "role" : "Contributor", - "links" : { - "github" : "aopisco", - "orcid" : "0000-0003-0142-2355", - "linkedin" : "aopisco" - }, - "organizations" : [ - { - "name" : "Insitro", - "href" : "https://insitro.com", - "role" : "Director of Computational Biology" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Dorien Roosen", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dorien@data-intuitive.com", - "github" : "dorien-er", - "linkedin" : "dorien-roosen" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Dries Schaumont", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dries@data-intuitive.com", - "github" : "DriesSchaumont", - "orcid" : "0000-0002-4389-0440", - "linkedin" : "dries-schaumont" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Emma Rousseau", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "emmarousseau", - "linkedin" : "emmarousseau1" - } - } - }, - { - "name" : "Jakub Majercik", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "jakub@data-intuitive.com", - "github" : "jakubmajercik", - "linkedin" : "jakubmajercik" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Bioinformatics Engineer" - } - ] - } - }, - { - "name" : "Kai Waldrant", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "KaiWaldrant", - "orcid" : "0009-0003-8555-1361", - "linkedin" : "kaiwaldrant" - } - } - }, - { - "name" : "Leïla Paquay", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "Leila011", - "linkedin" : "leilapaquay" - } - } - }, - { - "name" : "Sai Nirmayi Yasa", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "sainirmayi", - "linkedin" : "sai-nirmayi-yasa" - } - } - }, - { - "name" : "Theodoro Gasperin Terra Camargo", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "theodorogtc@gmail.com", - "github" : "tgaspe", - "linkedin" : "theodoro-gasperin-terra-camargo" - } - } - }, - { - "name" : "Toni Verbeiren", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "tverbeiren", - "linkedin" : "verbeiren" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist and CEO" - } - ] - } - }, - { - "name" : "Weiwei Schultz", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "linkedin" : "weiwei-schultz" - }, - "organizations" : [ - { - "name" : "Janssen R&D US", - "role" : "Associate Director Data Sciences" - } - ] - } - } - ], "keywords" : [ "bioinformatics", "modules", diff --git a/target/nextflow/cellranger/cellranger_count/.config.vsh.yaml b/target/nextflow/cellranger/cellranger_count/.config.vsh.yaml index 8e29eda0..9bb7080c 100644 --- a/target/nextflow/cellranger/cellranger_count/.config.vsh.yaml +++ b/target/nextflow/cellranger/cellranger_count/.config.vsh.yaml @@ -374,7 +374,7 @@ build_info: output: "target/nextflow/cellranger/cellranger_count" executable: "target/nextflow/cellranger/cellranger_count/main.nf" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -400,134 +400,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/nextflow/cellranger/cellranger_count/main.nf b/target/nextflow/cellranger/cellranger_count/main.nf index 4bae8c8a..f7a8e4bc 100644 --- a/target/nextflow/cellranger/cellranger_count/main.nf +++ b/target/nextflow/cellranger/cellranger_count/main.nf @@ -3474,7 +3474,7 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/cellranger/cellranger_count", "viash_version" : "0.9.4", - "git_commit" : "736f18e9887893ca830612b48744fe312fe3c696", + "git_commit" : "666507c86de9150bfbdffdb2dbabc1dbde3c3262", "git_remote" : "https://github.com/viash-hub/biobox" }, "package_config" : { @@ -3491,220 +3491,6 @@ meta = [ ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", ".engines[.type == 'docker'].target_tag := 'v0.4.0'" ], - "authors" : [ - { - "name" : "Robrecht Cannoodt", - "roles" : [ - "author", - "maintainer" - ], - "info" : { - "links" : { - "email" : "robrecht@data-intuitive.com", - "github" : "rcannood", - "orcid" : "0000-0003-3641-729X", - "linkedin" : "robrechtcannoodt" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Science Engineer" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Angela Oliveira Pisco", - "roles" : [ - "author" - ], - "info" : { - "role" : "Contributor", - "links" : { - "github" : "aopisco", - "orcid" : "0000-0003-0142-2355", - "linkedin" : "aopisco" - }, - "organizations" : [ - { - "name" : "Insitro", - "href" : "https://insitro.com", - "role" : "Director of Computational Biology" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Dorien Roosen", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dorien@data-intuitive.com", - "github" : "dorien-er", - "linkedin" : "dorien-roosen" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Dries Schaumont", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dries@data-intuitive.com", - "github" : "DriesSchaumont", - "orcid" : "0000-0002-4389-0440", - "linkedin" : "dries-schaumont" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Emma Rousseau", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "emmarousseau", - "linkedin" : "emmarousseau1" - } - } - }, - { - "name" : "Jakub Majercik", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "jakub@data-intuitive.com", - "github" : "jakubmajercik", - "linkedin" : "jakubmajercik" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Bioinformatics Engineer" - } - ] - } - }, - { - "name" : "Kai Waldrant", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "KaiWaldrant", - "orcid" : "0009-0003-8555-1361", - "linkedin" : "kaiwaldrant" - } - } - }, - { - "name" : "Leïla Paquay", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "Leila011", - "linkedin" : "leilapaquay" - } - } - }, - { - "name" : "Sai Nirmayi Yasa", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "sainirmayi", - "linkedin" : "sai-nirmayi-yasa" - } - } - }, - { - "name" : "Theodoro Gasperin Terra Camargo", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "theodorogtc@gmail.com", - "github" : "tgaspe", - "linkedin" : "theodoro-gasperin-terra-camargo" - } - } - }, - { - "name" : "Toni Verbeiren", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "tverbeiren", - "linkedin" : "verbeiren" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist and CEO" - } - ] - } - }, - { - "name" : "Weiwei Schultz", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "linkedin" : "weiwei-schultz" - }, - "organizations" : [ - { - "name" : "Janssen R&D US", - "role" : "Associate Director Data Sciences" - } - ] - } - } - ], "keywords" : [ "bioinformatics", "modules", diff --git a/target/nextflow/cellranger/cellranger_mkref/.config.vsh.yaml b/target/nextflow/cellranger/cellranger_mkref/.config.vsh.yaml index d150d9ff..eba1dd88 100644 --- a/target/nextflow/cellranger/cellranger_mkref/.config.vsh.yaml +++ b/target/nextflow/cellranger/cellranger_mkref/.config.vsh.yaml @@ -197,7 +197,7 @@ build_info: output: "target/nextflow/cellranger/cellranger_mkref" executable: "target/nextflow/cellranger/cellranger_mkref/main.nf" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -223,134 +223,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/nextflow/cellranger/cellranger_mkref/main.nf b/target/nextflow/cellranger/cellranger_mkref/main.nf index 89814e67..1c49f817 100644 --- a/target/nextflow/cellranger/cellranger_mkref/main.nf +++ b/target/nextflow/cellranger/cellranger_mkref/main.nf @@ -3285,7 +3285,7 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/cellranger/cellranger_mkref", "viash_version" : "0.9.4", - "git_commit" : "736f18e9887893ca830612b48744fe312fe3c696", + "git_commit" : "666507c86de9150bfbdffdb2dbabc1dbde3c3262", "git_remote" : "https://github.com/viash-hub/biobox" }, "package_config" : { @@ -3302,220 +3302,6 @@ meta = [ ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", ".engines[.type == 'docker'].target_tag := 'v0.4.0'" ], - "authors" : [ - { - "name" : "Robrecht Cannoodt", - "roles" : [ - "author", - "maintainer" - ], - "info" : { - "links" : { - "email" : "robrecht@data-intuitive.com", - "github" : "rcannood", - "orcid" : "0000-0003-3641-729X", - "linkedin" : "robrechtcannoodt" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Science Engineer" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Angela Oliveira Pisco", - "roles" : [ - "author" - ], - "info" : { - "role" : "Contributor", - "links" : { - "github" : "aopisco", - "orcid" : "0000-0003-0142-2355", - "linkedin" : "aopisco" - }, - "organizations" : [ - { - "name" : "Insitro", - "href" : "https://insitro.com", - "role" : "Director of Computational Biology" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Dorien Roosen", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dorien@data-intuitive.com", - "github" : "dorien-er", - "linkedin" : "dorien-roosen" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Dries Schaumont", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dries@data-intuitive.com", - "github" : "DriesSchaumont", - "orcid" : "0000-0002-4389-0440", - "linkedin" : "dries-schaumont" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Emma Rousseau", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "emmarousseau", - "linkedin" : "emmarousseau1" - } - } - }, - { - "name" : "Jakub Majercik", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "jakub@data-intuitive.com", - "github" : "jakubmajercik", - "linkedin" : "jakubmajercik" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Bioinformatics Engineer" - } - ] - } - }, - { - "name" : "Kai Waldrant", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "KaiWaldrant", - "orcid" : "0009-0003-8555-1361", - "linkedin" : "kaiwaldrant" - } - } - }, - { - "name" : "Leïla Paquay", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "Leila011", - "linkedin" : "leilapaquay" - } - } - }, - { - "name" : "Sai Nirmayi Yasa", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "sainirmayi", - "linkedin" : "sai-nirmayi-yasa" - } - } - }, - { - "name" : "Theodoro Gasperin Terra Camargo", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "theodorogtc@gmail.com", - "github" : "tgaspe", - "linkedin" : "theodoro-gasperin-terra-camargo" - } - } - }, - { - "name" : "Toni Verbeiren", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "tverbeiren", - "linkedin" : "verbeiren" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist and CEO" - } - ] - } - }, - { - "name" : "Weiwei Schultz", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "linkedin" : "weiwei-schultz" - }, - "organizations" : [ - { - "name" : "Janssen R&D US", - "role" : "Associate Director Data Sciences" - } - ] - } - } - ], "keywords" : [ "bioinformatics", "modules", diff --git a/target/nextflow/cutadapt/.config.vsh.yaml b/target/nextflow/cutadapt/.config.vsh.yaml index 5803e801..e767c823 100644 --- a/target/nextflow/cutadapt/.config.vsh.yaml +++ b/target/nextflow/cutadapt/.config.vsh.yaml @@ -743,7 +743,7 @@ build_info: output: "target/nextflow/cutadapt" executable: "target/nextflow/cutadapt/main.nf" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -769,134 +769,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/nextflow/cutadapt/main.nf b/target/nextflow/cutadapt/main.nf index a7ef3442..f8e29876 100644 --- a/target/nextflow/cutadapt/main.nf +++ b/target/nextflow/cutadapt/main.nf @@ -3849,7 +3849,7 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/cutadapt", "viash_version" : "0.9.4", - "git_commit" : "736f18e9887893ca830612b48744fe312fe3c696", + "git_commit" : "666507c86de9150bfbdffdb2dbabc1dbde3c3262", "git_remote" : "https://github.com/viash-hub/biobox" }, "package_config" : { @@ -3866,220 +3866,6 @@ meta = [ ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", ".engines[.type == 'docker'].target_tag := 'v0.4.0'" ], - "authors" : [ - { - "name" : "Robrecht Cannoodt", - "roles" : [ - "author", - "maintainer" - ], - "info" : { - "links" : { - "email" : "robrecht@data-intuitive.com", - "github" : "rcannood", - "orcid" : "0000-0003-3641-729X", - "linkedin" : "robrechtcannoodt" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Science Engineer" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Angela Oliveira Pisco", - "roles" : [ - "author" - ], - "info" : { - "role" : "Contributor", - "links" : { - "github" : "aopisco", - "orcid" : "0000-0003-0142-2355", - "linkedin" : "aopisco" - }, - "organizations" : [ - { - "name" : "Insitro", - "href" : "https://insitro.com", - "role" : "Director of Computational Biology" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Dorien Roosen", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dorien@data-intuitive.com", - "github" : "dorien-er", - "linkedin" : "dorien-roosen" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Dries Schaumont", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dries@data-intuitive.com", - "github" : "DriesSchaumont", - "orcid" : "0000-0002-4389-0440", - "linkedin" : "dries-schaumont" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Emma Rousseau", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "emmarousseau", - "linkedin" : "emmarousseau1" - } - } - }, - { - "name" : "Jakub Majercik", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "jakub@data-intuitive.com", - "github" : "jakubmajercik", - "linkedin" : "jakubmajercik" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Bioinformatics Engineer" - } - ] - } - }, - { - "name" : "Kai Waldrant", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "KaiWaldrant", - "orcid" : "0009-0003-8555-1361", - "linkedin" : "kaiwaldrant" - } - } - }, - { - "name" : "Leïla Paquay", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "Leila011", - "linkedin" : "leilapaquay" - } - } - }, - { - "name" : "Sai Nirmayi Yasa", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "sainirmayi", - "linkedin" : "sai-nirmayi-yasa" - } - } - }, - { - "name" : "Theodoro Gasperin Terra Camargo", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "theodorogtc@gmail.com", - "github" : "tgaspe", - "linkedin" : "theodoro-gasperin-terra-camargo" - } - } - }, - { - "name" : "Toni Verbeiren", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "tverbeiren", - "linkedin" : "verbeiren" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist and CEO" - } - ] - } - }, - { - "name" : "Weiwei Schultz", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "linkedin" : "weiwei-schultz" - }, - "organizations" : [ - { - "name" : "Janssen R&D US", - "role" : "Associate Director Data Sciences" - } - ] - } - } - ], "keywords" : [ "bioinformatics", "modules", diff --git a/target/nextflow/falco/.config.vsh.yaml b/target/nextflow/falco/.config.vsh.yaml index bc827d3e..83bb8b27 100644 --- a/target/nextflow/falco/.config.vsh.yaml +++ b/target/nextflow/falco/.config.vsh.yaml @@ -321,7 +321,7 @@ build_info: output: "target/nextflow/falco" executable: "target/nextflow/falco/main.nf" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -347,134 +347,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/nextflow/falco/main.nf b/target/nextflow/falco/main.nf index 41ac91eb..128b8f9f 100644 --- a/target/nextflow/falco/main.nf +++ b/target/nextflow/falco/main.nf @@ -3401,7 +3401,7 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/falco", "viash_version" : "0.9.4", - "git_commit" : "736f18e9887893ca830612b48744fe312fe3c696", + "git_commit" : "666507c86de9150bfbdffdb2dbabc1dbde3c3262", "git_remote" : "https://github.com/viash-hub/biobox" }, "package_config" : { @@ -3418,220 +3418,6 @@ meta = [ ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", ".engines[.type == 'docker'].target_tag := 'v0.4.0'" ], - "authors" : [ - { - "name" : "Robrecht Cannoodt", - "roles" : [ - "author", - "maintainer" - ], - "info" : { - "links" : { - "email" : "robrecht@data-intuitive.com", - "github" : "rcannood", - "orcid" : "0000-0003-3641-729X", - "linkedin" : "robrechtcannoodt" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Science Engineer" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Angela Oliveira Pisco", - "roles" : [ - "author" - ], - "info" : { - "role" : "Contributor", - "links" : { - "github" : "aopisco", - "orcid" : "0000-0003-0142-2355", - "linkedin" : "aopisco" - }, - "organizations" : [ - { - "name" : "Insitro", - "href" : "https://insitro.com", - "role" : "Director of Computational Biology" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Dorien Roosen", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dorien@data-intuitive.com", - "github" : "dorien-er", - "linkedin" : "dorien-roosen" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Dries Schaumont", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dries@data-intuitive.com", - "github" : "DriesSchaumont", - "orcid" : "0000-0002-4389-0440", - "linkedin" : "dries-schaumont" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Emma Rousseau", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "emmarousseau", - "linkedin" : "emmarousseau1" - } - } - }, - { - "name" : "Jakub Majercik", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "jakub@data-intuitive.com", - "github" : "jakubmajercik", - "linkedin" : "jakubmajercik" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Bioinformatics Engineer" - } - ] - } - }, - { - "name" : "Kai Waldrant", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "KaiWaldrant", - "orcid" : "0009-0003-8555-1361", - "linkedin" : "kaiwaldrant" - } - } - }, - { - "name" : "Leïla Paquay", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "Leila011", - "linkedin" : "leilapaquay" - } - } - }, - { - "name" : "Sai Nirmayi Yasa", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "sainirmayi", - "linkedin" : "sai-nirmayi-yasa" - } - } - }, - { - "name" : "Theodoro Gasperin Terra Camargo", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "theodorogtc@gmail.com", - "github" : "tgaspe", - "linkedin" : "theodoro-gasperin-terra-camargo" - } - } - }, - { - "name" : "Toni Verbeiren", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "tverbeiren", - "linkedin" : "verbeiren" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist and CEO" - } - ] - } - }, - { - "name" : "Weiwei Schultz", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "linkedin" : "weiwei-schultz" - }, - "organizations" : [ - { - "name" : "Janssen R&D US", - "role" : "Associate Director Data Sciences" - } - ] - } - } - ], "keywords" : [ "bioinformatics", "modules", diff --git a/target/nextflow/fastp/.config.vsh.yaml b/target/nextflow/fastp/.config.vsh.yaml index 64d59801..38b84765 100644 --- a/target/nextflow/fastp/.config.vsh.yaml +++ b/target/nextflow/fastp/.config.vsh.yaml @@ -1086,7 +1086,7 @@ build_info: output: "target/nextflow/fastp" executable: "target/nextflow/fastp/main.nf" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -1112,134 +1112,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/nextflow/fastp/main.nf b/target/nextflow/fastp/main.nf index fbefeb7b..1ef24dfd 100644 --- a/target/nextflow/fastp/main.nf +++ b/target/nextflow/fastp/main.nf @@ -4253,7 +4253,7 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/fastp", "viash_version" : "0.9.4", - "git_commit" : "736f18e9887893ca830612b48744fe312fe3c696", + "git_commit" : "666507c86de9150bfbdffdb2dbabc1dbde3c3262", "git_remote" : "https://github.com/viash-hub/biobox" }, "package_config" : { @@ -4270,220 +4270,6 @@ meta = [ ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", ".engines[.type == 'docker'].target_tag := 'v0.4.0'" ], - "authors" : [ - { - "name" : "Robrecht Cannoodt", - "roles" : [ - "author", - "maintainer" - ], - "info" : { - "links" : { - "email" : "robrecht@data-intuitive.com", - "github" : "rcannood", - "orcid" : "0000-0003-3641-729X", - "linkedin" : "robrechtcannoodt" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Science Engineer" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Angela Oliveira Pisco", - "roles" : [ - "author" - ], - "info" : { - "role" : "Contributor", - "links" : { - "github" : "aopisco", - "orcid" : "0000-0003-0142-2355", - "linkedin" : "aopisco" - }, - "organizations" : [ - { - "name" : "Insitro", - "href" : "https://insitro.com", - "role" : "Director of Computational Biology" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Dorien Roosen", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dorien@data-intuitive.com", - "github" : "dorien-er", - "linkedin" : "dorien-roosen" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Dries Schaumont", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dries@data-intuitive.com", - "github" : "DriesSchaumont", - "orcid" : "0000-0002-4389-0440", - "linkedin" : "dries-schaumont" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Emma Rousseau", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "emmarousseau", - "linkedin" : "emmarousseau1" - } - } - }, - { - "name" : "Jakub Majercik", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "jakub@data-intuitive.com", - "github" : "jakubmajercik", - "linkedin" : "jakubmajercik" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Bioinformatics Engineer" - } - ] - } - }, - { - "name" : "Kai Waldrant", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "KaiWaldrant", - "orcid" : "0009-0003-8555-1361", - "linkedin" : "kaiwaldrant" - } - } - }, - { - "name" : "Leïla Paquay", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "Leila011", - "linkedin" : "leilapaquay" - } - } - }, - { - "name" : "Sai Nirmayi Yasa", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "sainirmayi", - "linkedin" : "sai-nirmayi-yasa" - } - } - }, - { - "name" : "Theodoro Gasperin Terra Camargo", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "theodorogtc@gmail.com", - "github" : "tgaspe", - "linkedin" : "theodoro-gasperin-terra-camargo" - } - } - }, - { - "name" : "Toni Verbeiren", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "tverbeiren", - "linkedin" : "verbeiren" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist and CEO" - } - ] - } - }, - { - "name" : "Weiwei Schultz", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "linkedin" : "weiwei-schultz" - }, - "organizations" : [ - { - "name" : "Janssen R&D US", - "role" : "Associate Director Data Sciences" - } - ] - } - } - ], "keywords" : [ "bioinformatics", "modules", diff --git a/target/nextflow/fastqc/.config.vsh.yaml b/target/nextflow/fastqc/.config.vsh.yaml index d5e63f0a..5f9a9bd2 100644 --- a/target/nextflow/fastqc/.config.vsh.yaml +++ b/target/nextflow/fastqc/.config.vsh.yaml @@ -351,7 +351,7 @@ build_info: output: "target/nextflow/fastqc" executable: "target/nextflow/fastqc/main.nf" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -377,134 +377,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/nextflow/fastqc/main.nf b/target/nextflow/fastqc/main.nf index 4edb3612..d6751b80 100644 --- a/target/nextflow/fastqc/main.nf +++ b/target/nextflow/fastqc/main.nf @@ -3419,7 +3419,7 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/fastqc", "viash_version" : "0.9.4", - "git_commit" : "736f18e9887893ca830612b48744fe312fe3c696", + "git_commit" : "666507c86de9150bfbdffdb2dbabc1dbde3c3262", "git_remote" : "https://github.com/viash-hub/biobox" }, "package_config" : { @@ -3436,220 +3436,6 @@ meta = [ ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", ".engines[.type == 'docker'].target_tag := 'v0.4.0'" ], - "authors" : [ - { - "name" : "Robrecht Cannoodt", - "roles" : [ - "author", - "maintainer" - ], - "info" : { - "links" : { - "email" : "robrecht@data-intuitive.com", - "github" : "rcannood", - "orcid" : "0000-0003-3641-729X", - "linkedin" : "robrechtcannoodt" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Science Engineer" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Angela Oliveira Pisco", - "roles" : [ - "author" - ], - "info" : { - "role" : "Contributor", - "links" : { - "github" : "aopisco", - "orcid" : "0000-0003-0142-2355", - "linkedin" : "aopisco" - }, - "organizations" : [ - { - "name" : "Insitro", - "href" : "https://insitro.com", - "role" : "Director of Computational Biology" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Dorien Roosen", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dorien@data-intuitive.com", - "github" : "dorien-er", - "linkedin" : "dorien-roosen" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Dries Schaumont", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dries@data-intuitive.com", - "github" : "DriesSchaumont", - "orcid" : "0000-0002-4389-0440", - "linkedin" : "dries-schaumont" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Emma Rousseau", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "emmarousseau", - "linkedin" : "emmarousseau1" - } - } - }, - { - "name" : "Jakub Majercik", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "jakub@data-intuitive.com", - "github" : "jakubmajercik", - "linkedin" : "jakubmajercik" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Bioinformatics Engineer" - } - ] - } - }, - { - "name" : "Kai Waldrant", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "KaiWaldrant", - "orcid" : "0009-0003-8555-1361", - "linkedin" : "kaiwaldrant" - } - } - }, - { - "name" : "Leïla Paquay", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "Leila011", - "linkedin" : "leilapaquay" - } - } - }, - { - "name" : "Sai Nirmayi Yasa", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "sainirmayi", - "linkedin" : "sai-nirmayi-yasa" - } - } - }, - { - "name" : "Theodoro Gasperin Terra Camargo", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "theodorogtc@gmail.com", - "github" : "tgaspe", - "linkedin" : "theodoro-gasperin-terra-camargo" - } - } - }, - { - "name" : "Toni Verbeiren", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "tverbeiren", - "linkedin" : "verbeiren" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist and CEO" - } - ] - } - }, - { - "name" : "Weiwei Schultz", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "linkedin" : "weiwei-schultz" - }, - "organizations" : [ - { - "name" : "Janssen R&D US", - "role" : "Associate Director Data Sciences" - } - ] - } - } - ], "keywords" : [ "bioinformatics", "modules", diff --git a/target/nextflow/featurecounts/.config.vsh.yaml b/target/nextflow/featurecounts/.config.vsh.yaml index 46c3918d..4fb0ddda 100644 --- a/target/nextflow/featurecounts/.config.vsh.yaml +++ b/target/nextflow/featurecounts/.config.vsh.yaml @@ -644,7 +644,7 @@ build_info: output: "target/nextflow/featurecounts" executable: "target/nextflow/featurecounts/main.nf" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -670,134 +670,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/nextflow/featurecounts/main.nf b/target/nextflow/featurecounts/main.nf index 6b384ed9..0a5cd98a 100644 --- a/target/nextflow/featurecounts/main.nf +++ b/target/nextflow/featurecounts/main.nf @@ -3772,7 +3772,7 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/featurecounts", "viash_version" : "0.9.4", - "git_commit" : "736f18e9887893ca830612b48744fe312fe3c696", + "git_commit" : "666507c86de9150bfbdffdb2dbabc1dbde3c3262", "git_remote" : "https://github.com/viash-hub/biobox" }, "package_config" : { @@ -3789,220 +3789,6 @@ meta = [ ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", ".engines[.type == 'docker'].target_tag := 'v0.4.0'" ], - "authors" : [ - { - "name" : "Robrecht Cannoodt", - "roles" : [ - "author", - "maintainer" - ], - "info" : { - "links" : { - "email" : "robrecht@data-intuitive.com", - "github" : "rcannood", - "orcid" : "0000-0003-3641-729X", - "linkedin" : "robrechtcannoodt" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Science Engineer" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Angela Oliveira Pisco", - "roles" : [ - "author" - ], - "info" : { - "role" : "Contributor", - "links" : { - "github" : "aopisco", - "orcid" : "0000-0003-0142-2355", - "linkedin" : "aopisco" - }, - "organizations" : [ - { - "name" : "Insitro", - "href" : "https://insitro.com", - "role" : "Director of Computational Biology" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Dorien Roosen", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dorien@data-intuitive.com", - "github" : "dorien-er", - "linkedin" : "dorien-roosen" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Dries Schaumont", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dries@data-intuitive.com", - "github" : "DriesSchaumont", - "orcid" : "0000-0002-4389-0440", - "linkedin" : "dries-schaumont" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Emma Rousseau", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "emmarousseau", - "linkedin" : "emmarousseau1" - } - } - }, - { - "name" : "Jakub Majercik", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "jakub@data-intuitive.com", - "github" : "jakubmajercik", - "linkedin" : "jakubmajercik" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Bioinformatics Engineer" - } - ] - } - }, - { - "name" : "Kai Waldrant", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "KaiWaldrant", - "orcid" : "0009-0003-8555-1361", - "linkedin" : "kaiwaldrant" - } - } - }, - { - "name" : "Leïla Paquay", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "Leila011", - "linkedin" : "leilapaquay" - } - } - }, - { - "name" : "Sai Nirmayi Yasa", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "sainirmayi", - "linkedin" : "sai-nirmayi-yasa" - } - } - }, - { - "name" : "Theodoro Gasperin Terra Camargo", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "theodorogtc@gmail.com", - "github" : "tgaspe", - "linkedin" : "theodoro-gasperin-terra-camargo" - } - } - }, - { - "name" : "Toni Verbeiren", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "tverbeiren", - "linkedin" : "verbeiren" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist and CEO" - } - ] - } - }, - { - "name" : "Weiwei Schultz", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "linkedin" : "weiwei-schultz" - }, - "organizations" : [ - { - "name" : "Janssen R&D US", - "role" : "Associate Director Data Sciences" - } - ] - } - } - ], "keywords" : [ "bioinformatics", "modules", diff --git a/target/nextflow/fq/fq_filter/.config.vsh.yaml b/target/nextflow/fq/fq_filter/.config.vsh.yaml index 9325599f..cdd4fe43 100644 --- a/target/nextflow/fq/fq_filter/.config.vsh.yaml +++ b/target/nextflow/fq/fq_filter/.config.vsh.yaml @@ -179,7 +179,7 @@ build_info: output: "target/nextflow/fq/fq_filter" executable: "target/nextflow/fq/fq_filter/main.nf" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -205,134 +205,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/nextflow/fq/fq_filter/main.nf b/target/nextflow/fq/fq_filter/main.nf index d0e72ec1..39d62745 100644 --- a/target/nextflow/fq/fq_filter/main.nf +++ b/target/nextflow/fq/fq_filter/main.nf @@ -3263,7 +3263,7 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/fq/fq_filter", "viash_version" : "0.9.4", - "git_commit" : "736f18e9887893ca830612b48744fe312fe3c696", + "git_commit" : "666507c86de9150bfbdffdb2dbabc1dbde3c3262", "git_remote" : "https://github.com/viash-hub/biobox" }, "package_config" : { @@ -3280,220 +3280,6 @@ meta = [ ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", ".engines[.type == 'docker'].target_tag := 'v0.4.0'" ], - "authors" : [ - { - "name" : "Robrecht Cannoodt", - "roles" : [ - "author", - "maintainer" - ], - "info" : { - "links" : { - "email" : "robrecht@data-intuitive.com", - "github" : "rcannood", - "orcid" : "0000-0003-3641-729X", - "linkedin" : "robrechtcannoodt" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Science Engineer" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Angela Oliveira Pisco", - "roles" : [ - "author" - ], - "info" : { - "role" : "Contributor", - "links" : { - "github" : "aopisco", - "orcid" : "0000-0003-0142-2355", - "linkedin" : "aopisco" - }, - "organizations" : [ - { - "name" : "Insitro", - "href" : "https://insitro.com", - "role" : "Director of Computational Biology" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Dorien Roosen", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dorien@data-intuitive.com", - "github" : "dorien-er", - "linkedin" : "dorien-roosen" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Dries Schaumont", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dries@data-intuitive.com", - "github" : "DriesSchaumont", - "orcid" : "0000-0002-4389-0440", - "linkedin" : "dries-schaumont" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Emma Rousseau", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "emmarousseau", - "linkedin" : "emmarousseau1" - } - } - }, - { - "name" : "Jakub Majercik", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "jakub@data-intuitive.com", - "github" : "jakubmajercik", - "linkedin" : "jakubmajercik" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Bioinformatics Engineer" - } - ] - } - }, - { - "name" : "Kai Waldrant", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "KaiWaldrant", - "orcid" : "0009-0003-8555-1361", - "linkedin" : "kaiwaldrant" - } - } - }, - { - "name" : "Leïla Paquay", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "Leila011", - "linkedin" : "leilapaquay" - } - } - }, - { - "name" : "Sai Nirmayi Yasa", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "sainirmayi", - "linkedin" : "sai-nirmayi-yasa" - } - } - }, - { - "name" : "Theodoro Gasperin Terra Camargo", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "theodorogtc@gmail.com", - "github" : "tgaspe", - "linkedin" : "theodoro-gasperin-terra-camargo" - } - } - }, - { - "name" : "Toni Verbeiren", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "tverbeiren", - "linkedin" : "verbeiren" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist and CEO" - } - ] - } - }, - { - "name" : "Weiwei Schultz", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "linkedin" : "weiwei-schultz" - }, - "organizations" : [ - { - "name" : "Janssen R&D US", - "role" : "Associate Director Data Sciences" - } - ] - } - } - ], "keywords" : [ "bioinformatics", "modules", diff --git a/target/nextflow/fq/fq_generate/.config.vsh.yaml b/target/nextflow/fq/fq_generate/.config.vsh.yaml index c89a5665..26fa8ccf 100644 --- a/target/nextflow/fq/fq_generate/.config.vsh.yaml +++ b/target/nextflow/fq/fq_generate/.config.vsh.yaml @@ -203,7 +203,7 @@ build_info: output: "target/nextflow/fq/fq_generate" executable: "target/nextflow/fq/fq_generate/main.nf" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -229,134 +229,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/nextflow/fq/fq_generate/main.nf b/target/nextflow/fq/fq_generate/main.nf index 9eb8ccef..12c06381 100644 --- a/target/nextflow/fq/fq_generate/main.nf +++ b/target/nextflow/fq/fq_generate/main.nf @@ -3297,7 +3297,7 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/fq/fq_generate", "viash_version" : "0.9.4", - "git_commit" : "736f18e9887893ca830612b48744fe312fe3c696", + "git_commit" : "666507c86de9150bfbdffdb2dbabc1dbde3c3262", "git_remote" : "https://github.com/viash-hub/biobox" }, "package_config" : { @@ -3314,220 +3314,6 @@ meta = [ ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", ".engines[.type == 'docker'].target_tag := 'v0.4.0'" ], - "authors" : [ - { - "name" : "Robrecht Cannoodt", - "roles" : [ - "author", - "maintainer" - ], - "info" : { - "links" : { - "email" : "robrecht@data-intuitive.com", - "github" : "rcannood", - "orcid" : "0000-0003-3641-729X", - "linkedin" : "robrechtcannoodt" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Science Engineer" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Angela Oliveira Pisco", - "roles" : [ - "author" - ], - "info" : { - "role" : "Contributor", - "links" : { - "github" : "aopisco", - "orcid" : "0000-0003-0142-2355", - "linkedin" : "aopisco" - }, - "organizations" : [ - { - "name" : "Insitro", - "href" : "https://insitro.com", - "role" : "Director of Computational Biology" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Dorien Roosen", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dorien@data-intuitive.com", - "github" : "dorien-er", - "linkedin" : "dorien-roosen" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Dries Schaumont", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dries@data-intuitive.com", - "github" : "DriesSchaumont", - "orcid" : "0000-0002-4389-0440", - "linkedin" : "dries-schaumont" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Emma Rousseau", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "emmarousseau", - "linkedin" : "emmarousseau1" - } - } - }, - { - "name" : "Jakub Majercik", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "jakub@data-intuitive.com", - "github" : "jakubmajercik", - "linkedin" : "jakubmajercik" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Bioinformatics Engineer" - } - ] - } - }, - { - "name" : "Kai Waldrant", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "KaiWaldrant", - "orcid" : "0009-0003-8555-1361", - "linkedin" : "kaiwaldrant" - } - } - }, - { - "name" : "Leïla Paquay", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "Leila011", - "linkedin" : "leilapaquay" - } - } - }, - { - "name" : "Sai Nirmayi Yasa", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "sainirmayi", - "linkedin" : "sai-nirmayi-yasa" - } - } - }, - { - "name" : "Theodoro Gasperin Terra Camargo", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "theodorogtc@gmail.com", - "github" : "tgaspe", - "linkedin" : "theodoro-gasperin-terra-camargo" - } - } - }, - { - "name" : "Toni Verbeiren", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "tverbeiren", - "linkedin" : "verbeiren" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist and CEO" - } - ] - } - }, - { - "name" : "Weiwei Schultz", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "linkedin" : "weiwei-schultz" - }, - "organizations" : [ - { - "name" : "Janssen R&D US", - "role" : "Associate Director Data Sciences" - } - ] - } - } - ], "keywords" : [ "bioinformatics", "modules", diff --git a/target/nextflow/fq/fq_lint/.config.vsh.yaml b/target/nextflow/fq/fq_lint/.config.vsh.yaml index a717ed24..79966a8c 100644 --- a/target/nextflow/fq/fq_lint/.config.vsh.yaml +++ b/target/nextflow/fq/fq_lint/.config.vsh.yaml @@ -230,7 +230,7 @@ build_info: output: "target/nextflow/fq/fq_lint" executable: "target/nextflow/fq/fq_lint/main.nf" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -256,134 +256,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/nextflow/fq/fq_lint/main.nf b/target/nextflow/fq/fq_lint/main.nf index e207c592..75bee2d4 100644 --- a/target/nextflow/fq/fq_lint/main.nf +++ b/target/nextflow/fq/fq_lint/main.nf @@ -3328,7 +3328,7 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/fq/fq_lint", "viash_version" : "0.9.4", - "git_commit" : "736f18e9887893ca830612b48744fe312fe3c696", + "git_commit" : "666507c86de9150bfbdffdb2dbabc1dbde3c3262", "git_remote" : "https://github.com/viash-hub/biobox" }, "package_config" : { @@ -3345,220 +3345,6 @@ meta = [ ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", ".engines[.type == 'docker'].target_tag := 'v0.4.0'" ], - "authors" : [ - { - "name" : "Robrecht Cannoodt", - "roles" : [ - "author", - "maintainer" - ], - "info" : { - "links" : { - "email" : "robrecht@data-intuitive.com", - "github" : "rcannood", - "orcid" : "0000-0003-3641-729X", - "linkedin" : "robrechtcannoodt" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Science Engineer" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Angela Oliveira Pisco", - "roles" : [ - "author" - ], - "info" : { - "role" : "Contributor", - "links" : { - "github" : "aopisco", - "orcid" : "0000-0003-0142-2355", - "linkedin" : "aopisco" - }, - "organizations" : [ - { - "name" : "Insitro", - "href" : "https://insitro.com", - "role" : "Director of Computational Biology" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Dorien Roosen", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dorien@data-intuitive.com", - "github" : "dorien-er", - "linkedin" : "dorien-roosen" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Dries Schaumont", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dries@data-intuitive.com", - "github" : "DriesSchaumont", - "orcid" : "0000-0002-4389-0440", - "linkedin" : "dries-schaumont" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Emma Rousseau", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "emmarousseau", - "linkedin" : "emmarousseau1" - } - } - }, - { - "name" : "Jakub Majercik", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "jakub@data-intuitive.com", - "github" : "jakubmajercik", - "linkedin" : "jakubmajercik" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Bioinformatics Engineer" - } - ] - } - }, - { - "name" : "Kai Waldrant", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "KaiWaldrant", - "orcid" : "0009-0003-8555-1361", - "linkedin" : "kaiwaldrant" - } - } - }, - { - "name" : "Leïla Paquay", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "Leila011", - "linkedin" : "leilapaquay" - } - } - }, - { - "name" : "Sai Nirmayi Yasa", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "sainirmayi", - "linkedin" : "sai-nirmayi-yasa" - } - } - }, - { - "name" : "Theodoro Gasperin Terra Camargo", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "theodorogtc@gmail.com", - "github" : "tgaspe", - "linkedin" : "theodoro-gasperin-terra-camargo" - } - } - }, - { - "name" : "Toni Verbeiren", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "tverbeiren", - "linkedin" : "verbeiren" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist and CEO" - } - ] - } - }, - { - "name" : "Weiwei Schultz", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "linkedin" : "weiwei-schultz" - }, - "organizations" : [ - { - "name" : "Janssen R&D US", - "role" : "Associate Director Data Sciences" - } - ] - } - } - ], "keywords" : [ "bioinformatics", "modules", diff --git a/target/nextflow/fq/fq_subsample/.config.vsh.yaml b/target/nextflow/fq/fq_subsample/.config.vsh.yaml index 3cbb8340..fa098d0b 100644 --- a/target/nextflow/fq/fq_subsample/.config.vsh.yaml +++ b/target/nextflow/fq/fq_subsample/.config.vsh.yaml @@ -215,7 +215,7 @@ build_info: output: "target/nextflow/fq/fq_subsample" executable: "target/nextflow/fq/fq_subsample/main.nf" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -241,134 +241,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/nextflow/fq/fq_subsample/main.nf b/target/nextflow/fq/fq_subsample/main.nf index 3c319094..8311040b 100644 --- a/target/nextflow/fq/fq_subsample/main.nf +++ b/target/nextflow/fq/fq_subsample/main.nf @@ -3305,7 +3305,7 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/fq/fq_subsample", "viash_version" : "0.9.4", - "git_commit" : "736f18e9887893ca830612b48744fe312fe3c696", + "git_commit" : "666507c86de9150bfbdffdb2dbabc1dbde3c3262", "git_remote" : "https://github.com/viash-hub/biobox" }, "package_config" : { @@ -3322,220 +3322,6 @@ meta = [ ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", ".engines[.type == 'docker'].target_tag := 'v0.4.0'" ], - "authors" : [ - { - "name" : "Robrecht Cannoodt", - "roles" : [ - "author", - "maintainer" - ], - "info" : { - "links" : { - "email" : "robrecht@data-intuitive.com", - "github" : "rcannood", - "orcid" : "0000-0003-3641-729X", - "linkedin" : "robrechtcannoodt" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Science Engineer" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Angela Oliveira Pisco", - "roles" : [ - "author" - ], - "info" : { - "role" : "Contributor", - "links" : { - "github" : "aopisco", - "orcid" : "0000-0003-0142-2355", - "linkedin" : "aopisco" - }, - "organizations" : [ - { - "name" : "Insitro", - "href" : "https://insitro.com", - "role" : "Director of Computational Biology" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Dorien Roosen", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dorien@data-intuitive.com", - "github" : "dorien-er", - "linkedin" : "dorien-roosen" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Dries Schaumont", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dries@data-intuitive.com", - "github" : "DriesSchaumont", - "orcid" : "0000-0002-4389-0440", - "linkedin" : "dries-schaumont" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Emma Rousseau", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "emmarousseau", - "linkedin" : "emmarousseau1" - } - } - }, - { - "name" : "Jakub Majercik", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "jakub@data-intuitive.com", - "github" : "jakubmajercik", - "linkedin" : "jakubmajercik" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Bioinformatics Engineer" - } - ] - } - }, - { - "name" : "Kai Waldrant", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "KaiWaldrant", - "orcid" : "0009-0003-8555-1361", - "linkedin" : "kaiwaldrant" - } - } - }, - { - "name" : "Leïla Paquay", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "Leila011", - "linkedin" : "leilapaquay" - } - } - }, - { - "name" : "Sai Nirmayi Yasa", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "sainirmayi", - "linkedin" : "sai-nirmayi-yasa" - } - } - }, - { - "name" : "Theodoro Gasperin Terra Camargo", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "theodorogtc@gmail.com", - "github" : "tgaspe", - "linkedin" : "theodoro-gasperin-terra-camargo" - } - } - }, - { - "name" : "Toni Verbeiren", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "tverbeiren", - "linkedin" : "verbeiren" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist and CEO" - } - ] - } - }, - { - "name" : "Weiwei Schultz", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "linkedin" : "weiwei-schultz" - }, - "organizations" : [ - { - "name" : "Janssen R&D US", - "role" : "Associate Director Data Sciences" - } - ] - } - } - ], "keywords" : [ "bioinformatics", "modules", diff --git a/target/nextflow/gffread/.config.vsh.yaml b/target/nextflow/gffread/.config.vsh.yaml index a6062612..fa7d8769 100644 --- a/target/nextflow/gffread/.config.vsh.yaml +++ b/target/nextflow/gffread/.config.vsh.yaml @@ -683,7 +683,7 @@ build_info: output: "target/nextflow/gffread" executable: "target/nextflow/gffread/main.nf" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -709,134 +709,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/nextflow/gffread/main.nf b/target/nextflow/gffread/main.nf index 507490f6..47d8f5b2 100644 --- a/target/nextflow/gffread/main.nf +++ b/target/nextflow/gffread/main.nf @@ -3828,7 +3828,7 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/gffread", "viash_version" : "0.9.4", - "git_commit" : "736f18e9887893ca830612b48744fe312fe3c696", + "git_commit" : "666507c86de9150bfbdffdb2dbabc1dbde3c3262", "git_remote" : "https://github.com/viash-hub/biobox" }, "package_config" : { @@ -3845,220 +3845,6 @@ meta = [ ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", ".engines[.type == 'docker'].target_tag := 'v0.4.0'" ], - "authors" : [ - { - "name" : "Robrecht Cannoodt", - "roles" : [ - "author", - "maintainer" - ], - "info" : { - "links" : { - "email" : "robrecht@data-intuitive.com", - "github" : "rcannood", - "orcid" : "0000-0003-3641-729X", - "linkedin" : "robrechtcannoodt" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Science Engineer" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Angela Oliveira Pisco", - "roles" : [ - "author" - ], - "info" : { - "role" : "Contributor", - "links" : { - "github" : "aopisco", - "orcid" : "0000-0003-0142-2355", - "linkedin" : "aopisco" - }, - "organizations" : [ - { - "name" : "Insitro", - "href" : "https://insitro.com", - "role" : "Director of Computational Biology" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Dorien Roosen", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dorien@data-intuitive.com", - "github" : "dorien-er", - "linkedin" : "dorien-roosen" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Dries Schaumont", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dries@data-intuitive.com", - "github" : "DriesSchaumont", - "orcid" : "0000-0002-4389-0440", - "linkedin" : "dries-schaumont" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Emma Rousseau", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "emmarousseau", - "linkedin" : "emmarousseau1" - } - } - }, - { - "name" : "Jakub Majercik", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "jakub@data-intuitive.com", - "github" : "jakubmajercik", - "linkedin" : "jakubmajercik" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Bioinformatics Engineer" - } - ] - } - }, - { - "name" : "Kai Waldrant", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "KaiWaldrant", - "orcid" : "0009-0003-8555-1361", - "linkedin" : "kaiwaldrant" - } - } - }, - { - "name" : "Leïla Paquay", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "Leila011", - "linkedin" : "leilapaquay" - } - } - }, - { - "name" : "Sai Nirmayi Yasa", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "sainirmayi", - "linkedin" : "sai-nirmayi-yasa" - } - } - }, - { - "name" : "Theodoro Gasperin Terra Camargo", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "theodorogtc@gmail.com", - "github" : "tgaspe", - "linkedin" : "theodoro-gasperin-terra-camargo" - } - } - }, - { - "name" : "Toni Verbeiren", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "tverbeiren", - "linkedin" : "verbeiren" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist and CEO" - } - ] - } - }, - { - "name" : "Weiwei Schultz", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "linkedin" : "weiwei-schultz" - }, - "organizations" : [ - { - "name" : "Janssen R&D US", - "role" : "Associate Director Data Sciences" - } - ] - } - } - ], "keywords" : [ "bioinformatics", "modules", diff --git a/target/nextflow/kallisto/kallisto_index/.config.vsh.yaml b/target/nextflow/kallisto/kallisto_index/.config.vsh.yaml index 92a719dc..ae7f55ba 100644 --- a/target/nextflow/kallisto/kallisto_index/.config.vsh.yaml +++ b/target/nextflow/kallisto/kallisto_index/.config.vsh.yaml @@ -221,7 +221,7 @@ build_info: output: "target/nextflow/kallisto/kallisto_index" executable: "target/nextflow/kallisto/kallisto_index/main.nf" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -247,134 +247,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/nextflow/kallisto/kallisto_index/main.nf b/target/nextflow/kallisto/kallisto_index/main.nf index 6985b553..d3944334 100644 --- a/target/nextflow/kallisto/kallisto_index/main.nf +++ b/target/nextflow/kallisto/kallisto_index/main.nf @@ -3301,7 +3301,7 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/kallisto/kallisto_index", "viash_version" : "0.9.4", - "git_commit" : "736f18e9887893ca830612b48744fe312fe3c696", + "git_commit" : "666507c86de9150bfbdffdb2dbabc1dbde3c3262", "git_remote" : "https://github.com/viash-hub/biobox" }, "package_config" : { @@ -3318,220 +3318,6 @@ meta = [ ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", ".engines[.type == 'docker'].target_tag := 'v0.4.0'" ], - "authors" : [ - { - "name" : "Robrecht Cannoodt", - "roles" : [ - "author", - "maintainer" - ], - "info" : { - "links" : { - "email" : "robrecht@data-intuitive.com", - "github" : "rcannood", - "orcid" : "0000-0003-3641-729X", - "linkedin" : "robrechtcannoodt" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Science Engineer" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Angela Oliveira Pisco", - "roles" : [ - "author" - ], - "info" : { - "role" : "Contributor", - "links" : { - "github" : "aopisco", - "orcid" : "0000-0003-0142-2355", - "linkedin" : "aopisco" - }, - "organizations" : [ - { - "name" : "Insitro", - "href" : "https://insitro.com", - "role" : "Director of Computational Biology" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Dorien Roosen", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dorien@data-intuitive.com", - "github" : "dorien-er", - "linkedin" : "dorien-roosen" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Dries Schaumont", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dries@data-intuitive.com", - "github" : "DriesSchaumont", - "orcid" : "0000-0002-4389-0440", - "linkedin" : "dries-schaumont" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Emma Rousseau", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "emmarousseau", - "linkedin" : "emmarousseau1" - } - } - }, - { - "name" : "Jakub Majercik", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "jakub@data-intuitive.com", - "github" : "jakubmajercik", - "linkedin" : "jakubmajercik" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Bioinformatics Engineer" - } - ] - } - }, - { - "name" : "Kai Waldrant", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "KaiWaldrant", - "orcid" : "0009-0003-8555-1361", - "linkedin" : "kaiwaldrant" - } - } - }, - { - "name" : "Leïla Paquay", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "Leila011", - "linkedin" : "leilapaquay" - } - } - }, - { - "name" : "Sai Nirmayi Yasa", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "sainirmayi", - "linkedin" : "sai-nirmayi-yasa" - } - } - }, - { - "name" : "Theodoro Gasperin Terra Camargo", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "theodorogtc@gmail.com", - "github" : "tgaspe", - "linkedin" : "theodoro-gasperin-terra-camargo" - } - } - }, - { - "name" : "Toni Verbeiren", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "tverbeiren", - "linkedin" : "verbeiren" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist and CEO" - } - ] - } - }, - { - "name" : "Weiwei Schultz", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "linkedin" : "weiwei-schultz" - }, - "organizations" : [ - { - "name" : "Janssen R&D US", - "role" : "Associate Director Data Sciences" - } - ] - } - } - ], "keywords" : [ "bioinformatics", "modules", diff --git a/target/nextflow/kallisto/kallisto_quant/.config.vsh.yaml b/target/nextflow/kallisto/kallisto_quant/.config.vsh.yaml index da8ab0b9..92ad1f85 100644 --- a/target/nextflow/kallisto/kallisto_quant/.config.vsh.yaml +++ b/target/nextflow/kallisto/kallisto_quant/.config.vsh.yaml @@ -249,7 +249,7 @@ build_info: output: "target/nextflow/kallisto/kallisto_quant" executable: "target/nextflow/kallisto/kallisto_quant/main.nf" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -275,134 +275,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/nextflow/kallisto/kallisto_quant/main.nf b/target/nextflow/kallisto/kallisto_quant/main.nf index d74aede0..e29955ff 100644 --- a/target/nextflow/kallisto/kallisto_quant/main.nf +++ b/target/nextflow/kallisto/kallisto_quant/main.nf @@ -3335,7 +3335,7 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/kallisto/kallisto_quant", "viash_version" : "0.9.4", - "git_commit" : "736f18e9887893ca830612b48744fe312fe3c696", + "git_commit" : "666507c86de9150bfbdffdb2dbabc1dbde3c3262", "git_remote" : "https://github.com/viash-hub/biobox" }, "package_config" : { @@ -3352,220 +3352,6 @@ meta = [ ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", ".engines[.type == 'docker'].target_tag := 'v0.4.0'" ], - "authors" : [ - { - "name" : "Robrecht Cannoodt", - "roles" : [ - "author", - "maintainer" - ], - "info" : { - "links" : { - "email" : "robrecht@data-intuitive.com", - "github" : "rcannood", - "orcid" : "0000-0003-3641-729X", - "linkedin" : "robrechtcannoodt" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Science Engineer" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Angela Oliveira Pisco", - "roles" : [ - "author" - ], - "info" : { - "role" : "Contributor", - "links" : { - "github" : "aopisco", - "orcid" : "0000-0003-0142-2355", - "linkedin" : "aopisco" - }, - "organizations" : [ - { - "name" : "Insitro", - "href" : "https://insitro.com", - "role" : "Director of Computational Biology" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Dorien Roosen", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dorien@data-intuitive.com", - "github" : "dorien-er", - "linkedin" : "dorien-roosen" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Dries Schaumont", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dries@data-intuitive.com", - "github" : "DriesSchaumont", - "orcid" : "0000-0002-4389-0440", - "linkedin" : "dries-schaumont" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Emma Rousseau", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "emmarousseau", - "linkedin" : "emmarousseau1" - } - } - }, - { - "name" : "Jakub Majercik", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "jakub@data-intuitive.com", - "github" : "jakubmajercik", - "linkedin" : "jakubmajercik" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Bioinformatics Engineer" - } - ] - } - }, - { - "name" : "Kai Waldrant", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "KaiWaldrant", - "orcid" : "0009-0003-8555-1361", - "linkedin" : "kaiwaldrant" - } - } - }, - { - "name" : "Leïla Paquay", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "Leila011", - "linkedin" : "leilapaquay" - } - } - }, - { - "name" : "Sai Nirmayi Yasa", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "sainirmayi", - "linkedin" : "sai-nirmayi-yasa" - } - } - }, - { - "name" : "Theodoro Gasperin Terra Camargo", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "theodorogtc@gmail.com", - "github" : "tgaspe", - "linkedin" : "theodoro-gasperin-terra-camargo" - } - } - }, - { - "name" : "Toni Verbeiren", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "tverbeiren", - "linkedin" : "verbeiren" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist and CEO" - } - ] - } - }, - { - "name" : "Weiwei Schultz", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "linkedin" : "weiwei-schultz" - }, - "organizations" : [ - { - "name" : "Janssen R&D US", - "role" : "Associate Director Data Sciences" - } - ] - } - } - ], "keywords" : [ "bioinformatics", "modules", diff --git a/target/nextflow/lofreq/lofreq_call/.config.vsh.yaml b/target/nextflow/lofreq/lofreq_call/.config.vsh.yaml index 79b8b840..8bd552d7 100644 --- a/target/nextflow/lofreq/lofreq_call/.config.vsh.yaml +++ b/target/nextflow/lofreq/lofreq_call/.config.vsh.yaml @@ -503,7 +503,7 @@ build_info: output: "target/nextflow/lofreq/lofreq_call" executable: "target/nextflow/lofreq/lofreq_call/main.nf" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -529,134 +529,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/nextflow/lofreq/lofreq_call/main.nf b/target/nextflow/lofreq/lofreq_call/main.nf index 438fc310..d5f267df 100644 --- a/target/nextflow/lofreq/lofreq_call/main.nf +++ b/target/nextflow/lofreq/lofreq_call/main.nf @@ -3632,7 +3632,7 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/lofreq/lofreq_call", "viash_version" : "0.9.4", - "git_commit" : "736f18e9887893ca830612b48744fe312fe3c696", + "git_commit" : "666507c86de9150bfbdffdb2dbabc1dbde3c3262", "git_remote" : "https://github.com/viash-hub/biobox" }, "package_config" : { @@ -3649,220 +3649,6 @@ meta = [ ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", ".engines[.type == 'docker'].target_tag := 'v0.4.0'" ], - "authors" : [ - { - "name" : "Robrecht Cannoodt", - "roles" : [ - "author", - "maintainer" - ], - "info" : { - "links" : { - "email" : "robrecht@data-intuitive.com", - "github" : "rcannood", - "orcid" : "0000-0003-3641-729X", - "linkedin" : "robrechtcannoodt" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Science Engineer" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Angela Oliveira Pisco", - "roles" : [ - "author" - ], - "info" : { - "role" : "Contributor", - "links" : { - "github" : "aopisco", - "orcid" : "0000-0003-0142-2355", - "linkedin" : "aopisco" - }, - "organizations" : [ - { - "name" : "Insitro", - "href" : "https://insitro.com", - "role" : "Director of Computational Biology" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Dorien Roosen", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dorien@data-intuitive.com", - "github" : "dorien-er", - "linkedin" : "dorien-roosen" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Dries Schaumont", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dries@data-intuitive.com", - "github" : "DriesSchaumont", - "orcid" : "0000-0002-4389-0440", - "linkedin" : "dries-schaumont" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Emma Rousseau", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "emmarousseau", - "linkedin" : "emmarousseau1" - } - } - }, - { - "name" : "Jakub Majercik", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "jakub@data-intuitive.com", - "github" : "jakubmajercik", - "linkedin" : "jakubmajercik" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Bioinformatics Engineer" - } - ] - } - }, - { - "name" : "Kai Waldrant", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "KaiWaldrant", - "orcid" : "0009-0003-8555-1361", - "linkedin" : "kaiwaldrant" - } - } - }, - { - "name" : "Leïla Paquay", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "Leila011", - "linkedin" : "leilapaquay" - } - } - }, - { - "name" : "Sai Nirmayi Yasa", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "sainirmayi", - "linkedin" : "sai-nirmayi-yasa" - } - } - }, - { - "name" : "Theodoro Gasperin Terra Camargo", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "theodorogtc@gmail.com", - "github" : "tgaspe", - "linkedin" : "theodoro-gasperin-terra-camargo" - } - } - }, - { - "name" : "Toni Verbeiren", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "tverbeiren", - "linkedin" : "verbeiren" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist and CEO" - } - ] - } - }, - { - "name" : "Weiwei Schultz", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "linkedin" : "weiwei-schultz" - }, - "organizations" : [ - { - "name" : "Janssen R&D US", - "role" : "Associate Director Data Sciences" - } - ] - } - } - ], "keywords" : [ "bioinformatics", "modules", diff --git a/target/nextflow/lofreq/lofreq_indelqual/.config.vsh.yaml b/target/nextflow/lofreq/lofreq_indelqual/.config.vsh.yaml index f801ad1f..7d4c4542 100644 --- a/target/nextflow/lofreq/lofreq_indelqual/.config.vsh.yaml +++ b/target/nextflow/lofreq/lofreq_indelqual/.config.vsh.yaml @@ -211,7 +211,7 @@ build_info: output: "target/nextflow/lofreq/lofreq_indelqual" executable: "target/nextflow/lofreq/lofreq_indelqual/main.nf" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -237,134 +237,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/nextflow/lofreq/lofreq_indelqual/main.nf b/target/nextflow/lofreq/lofreq_indelqual/main.nf index 04f19633..af213582 100644 --- a/target/nextflow/lofreq/lofreq_indelqual/main.nf +++ b/target/nextflow/lofreq/lofreq_indelqual/main.nf @@ -3295,7 +3295,7 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/lofreq/lofreq_indelqual", "viash_version" : "0.9.4", - "git_commit" : "736f18e9887893ca830612b48744fe312fe3c696", + "git_commit" : "666507c86de9150bfbdffdb2dbabc1dbde3c3262", "git_remote" : "https://github.com/viash-hub/biobox" }, "package_config" : { @@ -3312,220 +3312,6 @@ meta = [ ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", ".engines[.type == 'docker'].target_tag := 'v0.4.0'" ], - "authors" : [ - { - "name" : "Robrecht Cannoodt", - "roles" : [ - "author", - "maintainer" - ], - "info" : { - "links" : { - "email" : "robrecht@data-intuitive.com", - "github" : "rcannood", - "orcid" : "0000-0003-3641-729X", - "linkedin" : "robrechtcannoodt" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Science Engineer" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Angela Oliveira Pisco", - "roles" : [ - "author" - ], - "info" : { - "role" : "Contributor", - "links" : { - "github" : "aopisco", - "orcid" : "0000-0003-0142-2355", - "linkedin" : "aopisco" - }, - "organizations" : [ - { - "name" : "Insitro", - "href" : "https://insitro.com", - "role" : "Director of Computational Biology" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Dorien Roosen", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dorien@data-intuitive.com", - "github" : "dorien-er", - "linkedin" : "dorien-roosen" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Dries Schaumont", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dries@data-intuitive.com", - "github" : "DriesSchaumont", - "orcid" : "0000-0002-4389-0440", - "linkedin" : "dries-schaumont" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Emma Rousseau", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "emmarousseau", - "linkedin" : "emmarousseau1" - } - } - }, - { - "name" : "Jakub Majercik", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "jakub@data-intuitive.com", - "github" : "jakubmajercik", - "linkedin" : "jakubmajercik" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Bioinformatics Engineer" - } - ] - } - }, - { - "name" : "Kai Waldrant", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "KaiWaldrant", - "orcid" : "0009-0003-8555-1361", - "linkedin" : "kaiwaldrant" - } - } - }, - { - "name" : "Leïla Paquay", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "Leila011", - "linkedin" : "leilapaquay" - } - } - }, - { - "name" : "Sai Nirmayi Yasa", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "sainirmayi", - "linkedin" : "sai-nirmayi-yasa" - } - } - }, - { - "name" : "Theodoro Gasperin Terra Camargo", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "theodorogtc@gmail.com", - "github" : "tgaspe", - "linkedin" : "theodoro-gasperin-terra-camargo" - } - } - }, - { - "name" : "Toni Verbeiren", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "tverbeiren", - "linkedin" : "verbeiren" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist and CEO" - } - ] - } - }, - { - "name" : "Weiwei Schultz", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "linkedin" : "weiwei-schultz" - }, - "organizations" : [ - { - "name" : "Janssen R&D US", - "role" : "Associate Director Data Sciences" - } - ] - } - } - ], "keywords" : [ "bioinformatics", "modules", diff --git a/target/nextflow/multiqc/.config.vsh.yaml b/target/nextflow/multiqc/.config.vsh.yaml index 24dc6b26..23f9180b 100644 --- a/target/nextflow/multiqc/.config.vsh.yaml +++ b/target/nextflow/multiqc/.config.vsh.yaml @@ -459,7 +459,7 @@ build_info: output: "target/nextflow/multiqc" executable: "target/nextflow/multiqc/main.nf" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -485,134 +485,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/nextflow/multiqc/main.nf b/target/nextflow/multiqc/main.nf index c36adcd7..cda44a63 100644 --- a/target/nextflow/multiqc/main.nf +++ b/target/nextflow/multiqc/main.nf @@ -3596,7 +3596,7 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/multiqc", "viash_version" : "0.9.4", - "git_commit" : "736f18e9887893ca830612b48744fe312fe3c696", + "git_commit" : "666507c86de9150bfbdffdb2dbabc1dbde3c3262", "git_remote" : "https://github.com/viash-hub/biobox" }, "package_config" : { @@ -3613,220 +3613,6 @@ meta = [ ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", ".engines[.type == 'docker'].target_tag := 'v0.4.0'" ], - "authors" : [ - { - "name" : "Robrecht Cannoodt", - "roles" : [ - "author", - "maintainer" - ], - "info" : { - "links" : { - "email" : "robrecht@data-intuitive.com", - "github" : "rcannood", - "orcid" : "0000-0003-3641-729X", - "linkedin" : "robrechtcannoodt" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Science Engineer" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Angela Oliveira Pisco", - "roles" : [ - "author" - ], - "info" : { - "role" : "Contributor", - "links" : { - "github" : "aopisco", - "orcid" : "0000-0003-0142-2355", - "linkedin" : "aopisco" - }, - "organizations" : [ - { - "name" : "Insitro", - "href" : "https://insitro.com", - "role" : "Director of Computational Biology" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Dorien Roosen", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dorien@data-intuitive.com", - "github" : "dorien-er", - "linkedin" : "dorien-roosen" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Dries Schaumont", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dries@data-intuitive.com", - "github" : "DriesSchaumont", - "orcid" : "0000-0002-4389-0440", - "linkedin" : "dries-schaumont" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Emma Rousseau", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "emmarousseau", - "linkedin" : "emmarousseau1" - } - } - }, - { - "name" : "Jakub Majercik", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "jakub@data-intuitive.com", - "github" : "jakubmajercik", - "linkedin" : "jakubmajercik" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Bioinformatics Engineer" - } - ] - } - }, - { - "name" : "Kai Waldrant", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "KaiWaldrant", - "orcid" : "0009-0003-8555-1361", - "linkedin" : "kaiwaldrant" - } - } - }, - { - "name" : "Leïla Paquay", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "Leila011", - "linkedin" : "leilapaquay" - } - } - }, - { - "name" : "Sai Nirmayi Yasa", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "sainirmayi", - "linkedin" : "sai-nirmayi-yasa" - } - } - }, - { - "name" : "Theodoro Gasperin Terra Camargo", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "theodorogtc@gmail.com", - "github" : "tgaspe", - "linkedin" : "theodoro-gasperin-terra-camargo" - } - } - }, - { - "name" : "Toni Verbeiren", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "tverbeiren", - "linkedin" : "verbeiren" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist and CEO" - } - ] - } - }, - { - "name" : "Weiwei Schultz", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "linkedin" : "weiwei-schultz" - }, - "organizations" : [ - { - "name" : "Janssen R&D US", - "role" : "Associate Director Data Sciences" - } - ] - } - } - ], "keywords" : [ "bioinformatics", "modules", diff --git a/target/nextflow/nanoplot/.config.vsh.yaml b/target/nextflow/nanoplot/.config.vsh.yaml index e35c5fd8..c64e1580 100644 --- a/target/nextflow/nanoplot/.config.vsh.yaml +++ b/target/nextflow/nanoplot/.config.vsh.yaml @@ -495,7 +495,7 @@ build_info: output: "target/nextflow/nanoplot" executable: "target/nextflow/nanoplot/main.nf" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -521,134 +521,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/nextflow/nanoplot/main.nf b/target/nextflow/nanoplot/main.nf index 56502cec..0db7f2f4 100644 --- a/target/nextflow/nanoplot/main.nf +++ b/target/nextflow/nanoplot/main.nf @@ -3627,7 +3627,7 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/nanoplot", "viash_version" : "0.9.4", - "git_commit" : "736f18e9887893ca830612b48744fe312fe3c696", + "git_commit" : "666507c86de9150bfbdffdb2dbabc1dbde3c3262", "git_remote" : "https://github.com/viash-hub/biobox" }, "package_config" : { @@ -3644,220 +3644,6 @@ meta = [ ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", ".engines[.type == 'docker'].target_tag := 'v0.4.0'" ], - "authors" : [ - { - "name" : "Robrecht Cannoodt", - "roles" : [ - "author", - "maintainer" - ], - "info" : { - "links" : { - "email" : "robrecht@data-intuitive.com", - "github" : "rcannood", - "orcid" : "0000-0003-3641-729X", - "linkedin" : "robrechtcannoodt" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Science Engineer" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Angela Oliveira Pisco", - "roles" : [ - "author" - ], - "info" : { - "role" : "Contributor", - "links" : { - "github" : "aopisco", - "orcid" : "0000-0003-0142-2355", - "linkedin" : "aopisco" - }, - "organizations" : [ - { - "name" : "Insitro", - "href" : "https://insitro.com", - "role" : "Director of Computational Biology" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Dorien Roosen", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dorien@data-intuitive.com", - "github" : "dorien-er", - "linkedin" : "dorien-roosen" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Dries Schaumont", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dries@data-intuitive.com", - "github" : "DriesSchaumont", - "orcid" : "0000-0002-4389-0440", - "linkedin" : "dries-schaumont" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Emma Rousseau", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "emmarousseau", - "linkedin" : "emmarousseau1" - } - } - }, - { - "name" : "Jakub Majercik", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "jakub@data-intuitive.com", - "github" : "jakubmajercik", - "linkedin" : "jakubmajercik" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Bioinformatics Engineer" - } - ] - } - }, - { - "name" : "Kai Waldrant", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "KaiWaldrant", - "orcid" : "0009-0003-8555-1361", - "linkedin" : "kaiwaldrant" - } - } - }, - { - "name" : "Leïla Paquay", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "Leila011", - "linkedin" : "leilapaquay" - } - } - }, - { - "name" : "Sai Nirmayi Yasa", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "sainirmayi", - "linkedin" : "sai-nirmayi-yasa" - } - } - }, - { - "name" : "Theodoro Gasperin Terra Camargo", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "theodorogtc@gmail.com", - "github" : "tgaspe", - "linkedin" : "theodoro-gasperin-terra-camargo" - } - } - }, - { - "name" : "Toni Verbeiren", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "tverbeiren", - "linkedin" : "verbeiren" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist and CEO" - } - ] - } - }, - { - "name" : "Weiwei Schultz", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "linkedin" : "weiwei-schultz" - }, - "organizations" : [ - { - "name" : "Janssen R&D US", - "role" : "Associate Director Data Sciences" - } - ] - } - } - ], "keywords" : [ "bioinformatics", "modules", diff --git a/target/nextflow/pear/.config.vsh.yaml b/target/nextflow/pear/.config.vsh.yaml index 493e9004..36d11e9f 100644 --- a/target/nextflow/pear/.config.vsh.yaml +++ b/target/nextflow/pear/.config.vsh.yaml @@ -395,7 +395,7 @@ build_info: output: "target/nextflow/pear" executable: "target/nextflow/pear/main.nf" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -421,134 +421,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/nextflow/pear/main.nf b/target/nextflow/pear/main.nf index 55946ee7..634b8456 100644 --- a/target/nextflow/pear/main.nf +++ b/target/nextflow/pear/main.nf @@ -3478,7 +3478,7 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/pear", "viash_version" : "0.9.4", - "git_commit" : "736f18e9887893ca830612b48744fe312fe3c696", + "git_commit" : "666507c86de9150bfbdffdb2dbabc1dbde3c3262", "git_remote" : "https://github.com/viash-hub/biobox" }, "package_config" : { @@ -3495,220 +3495,6 @@ meta = [ ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", ".engines[.type == 'docker'].target_tag := 'v0.4.0'" ], - "authors" : [ - { - "name" : "Robrecht Cannoodt", - "roles" : [ - "author", - "maintainer" - ], - "info" : { - "links" : { - "email" : "robrecht@data-intuitive.com", - "github" : "rcannood", - "orcid" : "0000-0003-3641-729X", - "linkedin" : "robrechtcannoodt" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Science Engineer" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Angela Oliveira Pisco", - "roles" : [ - "author" - ], - "info" : { - "role" : "Contributor", - "links" : { - "github" : "aopisco", - "orcid" : "0000-0003-0142-2355", - "linkedin" : "aopisco" - }, - "organizations" : [ - { - "name" : "Insitro", - "href" : "https://insitro.com", - "role" : "Director of Computational Biology" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Dorien Roosen", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dorien@data-intuitive.com", - "github" : "dorien-er", - "linkedin" : "dorien-roosen" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Dries Schaumont", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dries@data-intuitive.com", - "github" : "DriesSchaumont", - "orcid" : "0000-0002-4389-0440", - "linkedin" : "dries-schaumont" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Emma Rousseau", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "emmarousseau", - "linkedin" : "emmarousseau1" - } - } - }, - { - "name" : "Jakub Majercik", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "jakub@data-intuitive.com", - "github" : "jakubmajercik", - "linkedin" : "jakubmajercik" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Bioinformatics Engineer" - } - ] - } - }, - { - "name" : "Kai Waldrant", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "KaiWaldrant", - "orcid" : "0009-0003-8555-1361", - "linkedin" : "kaiwaldrant" - } - } - }, - { - "name" : "Leïla Paquay", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "Leila011", - "linkedin" : "leilapaquay" - } - } - }, - { - "name" : "Sai Nirmayi Yasa", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "sainirmayi", - "linkedin" : "sai-nirmayi-yasa" - } - } - }, - { - "name" : "Theodoro Gasperin Terra Camargo", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "theodorogtc@gmail.com", - "github" : "tgaspe", - "linkedin" : "theodoro-gasperin-terra-camargo" - } - } - }, - { - "name" : "Toni Verbeiren", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "tverbeiren", - "linkedin" : "verbeiren" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist and CEO" - } - ] - } - }, - { - "name" : "Weiwei Schultz", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "linkedin" : "weiwei-schultz" - }, - "organizations" : [ - { - "name" : "Janssen R&D US", - "role" : "Associate Director Data Sciences" - } - ] - } - } - ], "keywords" : [ "bioinformatics", "modules", diff --git a/target/nextflow/qualimap/qualimap_rnaseq/.config.vsh.yaml b/target/nextflow/qualimap/qualimap_rnaseq/.config.vsh.yaml index 186fc9c6..82a64cae 100644 --- a/target/nextflow/qualimap/qualimap_rnaseq/.config.vsh.yaml +++ b/target/nextflow/qualimap/qualimap_rnaseq/.config.vsh.yaml @@ -267,7 +267,7 @@ build_info: output: "target/nextflow/qualimap/qualimap_rnaseq" executable: "target/nextflow/qualimap/qualimap_rnaseq/main.nf" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -293,134 +293,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/nextflow/qualimap/qualimap_rnaseq/main.nf b/target/nextflow/qualimap/qualimap_rnaseq/main.nf index a75864bf..c733b22d 100644 --- a/target/nextflow/qualimap/qualimap_rnaseq/main.nf +++ b/target/nextflow/qualimap/qualimap_rnaseq/main.nf @@ -3359,7 +3359,7 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/qualimap/qualimap_rnaseq", "viash_version" : "0.9.4", - "git_commit" : "736f18e9887893ca830612b48744fe312fe3c696", + "git_commit" : "666507c86de9150bfbdffdb2dbabc1dbde3c3262", "git_remote" : "https://github.com/viash-hub/biobox" }, "package_config" : { @@ -3376,220 +3376,6 @@ meta = [ ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", ".engines[.type == 'docker'].target_tag := 'v0.4.0'" ], - "authors" : [ - { - "name" : "Robrecht Cannoodt", - "roles" : [ - "author", - "maintainer" - ], - "info" : { - "links" : { - "email" : "robrecht@data-intuitive.com", - "github" : "rcannood", - "orcid" : "0000-0003-3641-729X", - "linkedin" : "robrechtcannoodt" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Science Engineer" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Angela Oliveira Pisco", - "roles" : [ - "author" - ], - "info" : { - "role" : "Contributor", - "links" : { - "github" : "aopisco", - "orcid" : "0000-0003-0142-2355", - "linkedin" : "aopisco" - }, - "organizations" : [ - { - "name" : "Insitro", - "href" : "https://insitro.com", - "role" : "Director of Computational Biology" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Dorien Roosen", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dorien@data-intuitive.com", - "github" : "dorien-er", - "linkedin" : "dorien-roosen" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Dries Schaumont", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dries@data-intuitive.com", - "github" : "DriesSchaumont", - "orcid" : "0000-0002-4389-0440", - "linkedin" : "dries-schaumont" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Emma Rousseau", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "emmarousseau", - "linkedin" : "emmarousseau1" - } - } - }, - { - "name" : "Jakub Majercik", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "jakub@data-intuitive.com", - "github" : "jakubmajercik", - "linkedin" : "jakubmajercik" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Bioinformatics Engineer" - } - ] - } - }, - { - "name" : "Kai Waldrant", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "KaiWaldrant", - "orcid" : "0009-0003-8555-1361", - "linkedin" : "kaiwaldrant" - } - } - }, - { - "name" : "Leïla Paquay", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "Leila011", - "linkedin" : "leilapaquay" - } - } - }, - { - "name" : "Sai Nirmayi Yasa", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "sainirmayi", - "linkedin" : "sai-nirmayi-yasa" - } - } - }, - { - "name" : "Theodoro Gasperin Terra Camargo", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "theodorogtc@gmail.com", - "github" : "tgaspe", - "linkedin" : "theodoro-gasperin-terra-camargo" - } - } - }, - { - "name" : "Toni Verbeiren", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "tverbeiren", - "linkedin" : "verbeiren" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist and CEO" - } - ] - } - }, - { - "name" : "Weiwei Schultz", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "linkedin" : "weiwei-schultz" - }, - "organizations" : [ - { - "name" : "Janssen R&D US", - "role" : "Associate Director Data Sciences" - } - ] - } - } - ], "keywords" : [ "bioinformatics", "modules", diff --git a/target/nextflow/rsem/rsem_calculate_expression/.config.vsh.yaml b/target/nextflow/rsem/rsem_calculate_expression/.config.vsh.yaml index 8c04c523..18379587 100644 --- a/target/nextflow/rsem/rsem_calculate_expression/.config.vsh.yaml +++ b/target/nextflow/rsem/rsem_calculate_expression/.config.vsh.yaml @@ -855,7 +855,7 @@ build_info: output: "target/nextflow/rsem/rsem_calculate_expression" executable: "target/nextflow/rsem/rsem_calculate_expression/main.nf" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -881,134 +881,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/nextflow/rsem/rsem_calculate_expression/main.nf b/target/nextflow/rsem/rsem_calculate_expression/main.nf index 0f9f1e58..ce792678 100644 --- a/target/nextflow/rsem/rsem_calculate_expression/main.nf +++ b/target/nextflow/rsem/rsem_calculate_expression/main.nf @@ -3891,7 +3891,7 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/rsem/rsem_calculate_expression", "viash_version" : "0.9.4", - "git_commit" : "736f18e9887893ca830612b48744fe312fe3c696", + "git_commit" : "666507c86de9150bfbdffdb2dbabc1dbde3c3262", "git_remote" : "https://github.com/viash-hub/biobox" }, "package_config" : { @@ -3908,220 +3908,6 @@ meta = [ ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", ".engines[.type == 'docker'].target_tag := 'v0.4.0'" ], - "authors" : [ - { - "name" : "Robrecht Cannoodt", - "roles" : [ - "author", - "maintainer" - ], - "info" : { - "links" : { - "email" : "robrecht@data-intuitive.com", - "github" : "rcannood", - "orcid" : "0000-0003-3641-729X", - "linkedin" : "robrechtcannoodt" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Science Engineer" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Angela Oliveira Pisco", - "roles" : [ - "author" - ], - "info" : { - "role" : "Contributor", - "links" : { - "github" : "aopisco", - "orcid" : "0000-0003-0142-2355", - "linkedin" : "aopisco" - }, - "organizations" : [ - { - "name" : "Insitro", - "href" : "https://insitro.com", - "role" : "Director of Computational Biology" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Dorien Roosen", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dorien@data-intuitive.com", - "github" : "dorien-er", - "linkedin" : "dorien-roosen" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Dries Schaumont", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dries@data-intuitive.com", - "github" : "DriesSchaumont", - "orcid" : "0000-0002-4389-0440", - "linkedin" : "dries-schaumont" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Emma Rousseau", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "emmarousseau", - "linkedin" : "emmarousseau1" - } - } - }, - { - "name" : "Jakub Majercik", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "jakub@data-intuitive.com", - "github" : "jakubmajercik", - "linkedin" : "jakubmajercik" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Bioinformatics Engineer" - } - ] - } - }, - { - "name" : "Kai Waldrant", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "KaiWaldrant", - "orcid" : "0009-0003-8555-1361", - "linkedin" : "kaiwaldrant" - } - } - }, - { - "name" : "Leïla Paquay", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "Leila011", - "linkedin" : "leilapaquay" - } - } - }, - { - "name" : "Sai Nirmayi Yasa", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "sainirmayi", - "linkedin" : "sai-nirmayi-yasa" - } - } - }, - { - "name" : "Theodoro Gasperin Terra Camargo", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "theodorogtc@gmail.com", - "github" : "tgaspe", - "linkedin" : "theodoro-gasperin-terra-camargo" - } - } - }, - { - "name" : "Toni Verbeiren", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "tverbeiren", - "linkedin" : "verbeiren" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist and CEO" - } - ] - } - }, - { - "name" : "Weiwei Schultz", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "linkedin" : "weiwei-schultz" - }, - "organizations" : [ - { - "name" : "Janssen R&D US", - "role" : "Associate Director Data Sciences" - } - ] - } - } - ], "keywords" : [ "bioinformatics", "modules", diff --git a/target/nextflow/rsem/rsem_prepare_reference/.config.vsh.yaml b/target/nextflow/rsem/rsem_prepare_reference/.config.vsh.yaml index e39b872e..5fe9d2d2 100644 --- a/target/nextflow/rsem/rsem_prepare_reference/.config.vsh.yaml +++ b/target/nextflow/rsem/rsem_prepare_reference/.config.vsh.yaml @@ -415,7 +415,7 @@ build_info: output: "target/nextflow/rsem/rsem_prepare_reference" executable: "target/nextflow/rsem/rsem_prepare_reference/main.nf" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -441,134 +441,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/nextflow/rsem/rsem_prepare_reference/main.nf b/target/nextflow/rsem/rsem_prepare_reference/main.nf index 2c7a02b1..1eca7611 100644 --- a/target/nextflow/rsem/rsem_prepare_reference/main.nf +++ b/target/nextflow/rsem/rsem_prepare_reference/main.nf @@ -3468,7 +3468,7 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/rsem/rsem_prepare_reference", "viash_version" : "0.9.4", - "git_commit" : "736f18e9887893ca830612b48744fe312fe3c696", + "git_commit" : "666507c86de9150bfbdffdb2dbabc1dbde3c3262", "git_remote" : "https://github.com/viash-hub/biobox" }, "package_config" : { @@ -3485,220 +3485,6 @@ meta = [ ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", ".engines[.type == 'docker'].target_tag := 'v0.4.0'" ], - "authors" : [ - { - "name" : "Robrecht Cannoodt", - "roles" : [ - "author", - "maintainer" - ], - "info" : { - "links" : { - "email" : "robrecht@data-intuitive.com", - "github" : "rcannood", - "orcid" : "0000-0003-3641-729X", - "linkedin" : "robrechtcannoodt" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Science Engineer" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Angela Oliveira Pisco", - "roles" : [ - "author" - ], - "info" : { - "role" : "Contributor", - "links" : { - "github" : "aopisco", - "orcid" : "0000-0003-0142-2355", - "linkedin" : "aopisco" - }, - "organizations" : [ - { - "name" : "Insitro", - "href" : "https://insitro.com", - "role" : "Director of Computational Biology" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Dorien Roosen", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dorien@data-intuitive.com", - "github" : "dorien-er", - "linkedin" : "dorien-roosen" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Dries Schaumont", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dries@data-intuitive.com", - "github" : "DriesSchaumont", - "orcid" : "0000-0002-4389-0440", - "linkedin" : "dries-schaumont" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Emma Rousseau", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "emmarousseau", - "linkedin" : "emmarousseau1" - } - } - }, - { - "name" : "Jakub Majercik", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "jakub@data-intuitive.com", - "github" : "jakubmajercik", - "linkedin" : "jakubmajercik" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Bioinformatics Engineer" - } - ] - } - }, - { - "name" : "Kai Waldrant", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "KaiWaldrant", - "orcid" : "0009-0003-8555-1361", - "linkedin" : "kaiwaldrant" - } - } - }, - { - "name" : "Leïla Paquay", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "Leila011", - "linkedin" : "leilapaquay" - } - } - }, - { - "name" : "Sai Nirmayi Yasa", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "sainirmayi", - "linkedin" : "sai-nirmayi-yasa" - } - } - }, - { - "name" : "Theodoro Gasperin Terra Camargo", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "theodorogtc@gmail.com", - "github" : "tgaspe", - "linkedin" : "theodoro-gasperin-terra-camargo" - } - } - }, - { - "name" : "Toni Verbeiren", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "tverbeiren", - "linkedin" : "verbeiren" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist and CEO" - } - ] - } - }, - { - "name" : "Weiwei Schultz", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "linkedin" : "weiwei-schultz" - }, - "organizations" : [ - { - "name" : "Janssen R&D US", - "role" : "Associate Director Data Sciences" - } - ] - } - } - ], "keywords" : [ "bioinformatics", "modules", diff --git a/target/nextflow/rseqc/rseqc_bamstat/.config.vsh.yaml b/target/nextflow/rseqc/rseqc_bamstat/.config.vsh.yaml index 46f531a5..a6854cb4 100644 --- a/target/nextflow/rseqc/rseqc_bamstat/.config.vsh.yaml +++ b/target/nextflow/rseqc/rseqc_bamstat/.config.vsh.yaml @@ -173,7 +173,7 @@ build_info: output: "target/nextflow/rseqc/rseqc_bamstat" executable: "target/nextflow/rseqc/rseqc_bamstat/main.nf" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -199,134 +199,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/nextflow/rseqc/rseqc_bamstat/main.nf b/target/nextflow/rseqc/rseqc_bamstat/main.nf index 79329cf0..845425b0 100644 --- a/target/nextflow/rseqc/rseqc_bamstat/main.nf +++ b/target/nextflow/rseqc/rseqc_bamstat/main.nf @@ -3258,7 +3258,7 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/rseqc/rseqc_bamstat", "viash_version" : "0.9.4", - "git_commit" : "736f18e9887893ca830612b48744fe312fe3c696", + "git_commit" : "666507c86de9150bfbdffdb2dbabc1dbde3c3262", "git_remote" : "https://github.com/viash-hub/biobox" }, "package_config" : { @@ -3275,220 +3275,6 @@ meta = [ ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", ".engines[.type == 'docker'].target_tag := 'v0.4.0'" ], - "authors" : [ - { - "name" : "Robrecht Cannoodt", - "roles" : [ - "author", - "maintainer" - ], - "info" : { - "links" : { - "email" : "robrecht@data-intuitive.com", - "github" : "rcannood", - "orcid" : "0000-0003-3641-729X", - "linkedin" : "robrechtcannoodt" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Science Engineer" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Angela Oliveira Pisco", - "roles" : [ - "author" - ], - "info" : { - "role" : "Contributor", - "links" : { - "github" : "aopisco", - "orcid" : "0000-0003-0142-2355", - "linkedin" : "aopisco" - }, - "organizations" : [ - { - "name" : "Insitro", - "href" : "https://insitro.com", - "role" : "Director of Computational Biology" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Dorien Roosen", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dorien@data-intuitive.com", - "github" : "dorien-er", - "linkedin" : "dorien-roosen" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Dries Schaumont", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dries@data-intuitive.com", - "github" : "DriesSchaumont", - "orcid" : "0000-0002-4389-0440", - "linkedin" : "dries-schaumont" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Emma Rousseau", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "emmarousseau", - "linkedin" : "emmarousseau1" - } - } - }, - { - "name" : "Jakub Majercik", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "jakub@data-intuitive.com", - "github" : "jakubmajercik", - "linkedin" : "jakubmajercik" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Bioinformatics Engineer" - } - ] - } - }, - { - "name" : "Kai Waldrant", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "KaiWaldrant", - "orcid" : "0009-0003-8555-1361", - "linkedin" : "kaiwaldrant" - } - } - }, - { - "name" : "Leïla Paquay", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "Leila011", - "linkedin" : "leilapaquay" - } - } - }, - { - "name" : "Sai Nirmayi Yasa", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "sainirmayi", - "linkedin" : "sai-nirmayi-yasa" - } - } - }, - { - "name" : "Theodoro Gasperin Terra Camargo", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "theodorogtc@gmail.com", - "github" : "tgaspe", - "linkedin" : "theodoro-gasperin-terra-camargo" - } - } - }, - { - "name" : "Toni Verbeiren", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "tverbeiren", - "linkedin" : "verbeiren" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist and CEO" - } - ] - } - }, - { - "name" : "Weiwei Schultz", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "linkedin" : "weiwei-schultz" - }, - "organizations" : [ - { - "name" : "Janssen R&D US", - "role" : "Associate Director Data Sciences" - } - ] - } - } - ], "keywords" : [ "bioinformatics", "modules", diff --git a/target/nextflow/rseqc/rseqc_inferexperiment/.config.vsh.yaml b/target/nextflow/rseqc/rseqc_inferexperiment/.config.vsh.yaml index 4dd65765..bae642bf 100644 --- a/target/nextflow/rseqc/rseqc_inferexperiment/.config.vsh.yaml +++ b/target/nextflow/rseqc/rseqc_inferexperiment/.config.vsh.yaml @@ -199,7 +199,7 @@ build_info: output: "target/nextflow/rseqc/rseqc_inferexperiment" executable: "target/nextflow/rseqc/rseqc_inferexperiment/main.nf" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -225,134 +225,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/nextflow/rseqc/rseqc_inferexperiment/main.nf b/target/nextflow/rseqc/rseqc_inferexperiment/main.nf index 93544bb4..11c777d5 100644 --- a/target/nextflow/rseqc/rseqc_inferexperiment/main.nf +++ b/target/nextflow/rseqc/rseqc_inferexperiment/main.nf @@ -3291,7 +3291,7 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/rseqc/rseqc_inferexperiment", "viash_version" : "0.9.4", - "git_commit" : "736f18e9887893ca830612b48744fe312fe3c696", + "git_commit" : "666507c86de9150bfbdffdb2dbabc1dbde3c3262", "git_remote" : "https://github.com/viash-hub/biobox" }, "package_config" : { @@ -3308,220 +3308,6 @@ meta = [ ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", ".engines[.type == 'docker'].target_tag := 'v0.4.0'" ], - "authors" : [ - { - "name" : "Robrecht Cannoodt", - "roles" : [ - "author", - "maintainer" - ], - "info" : { - "links" : { - "email" : "robrecht@data-intuitive.com", - "github" : "rcannood", - "orcid" : "0000-0003-3641-729X", - "linkedin" : "robrechtcannoodt" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Science Engineer" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Angela Oliveira Pisco", - "roles" : [ - "author" - ], - "info" : { - "role" : "Contributor", - "links" : { - "github" : "aopisco", - "orcid" : "0000-0003-0142-2355", - "linkedin" : "aopisco" - }, - "organizations" : [ - { - "name" : "Insitro", - "href" : "https://insitro.com", - "role" : "Director of Computational Biology" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Dorien Roosen", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dorien@data-intuitive.com", - "github" : "dorien-er", - "linkedin" : "dorien-roosen" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Dries Schaumont", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dries@data-intuitive.com", - "github" : "DriesSchaumont", - "orcid" : "0000-0002-4389-0440", - "linkedin" : "dries-schaumont" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Emma Rousseau", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "emmarousseau", - "linkedin" : "emmarousseau1" - } - } - }, - { - "name" : "Jakub Majercik", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "jakub@data-intuitive.com", - "github" : "jakubmajercik", - "linkedin" : "jakubmajercik" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Bioinformatics Engineer" - } - ] - } - }, - { - "name" : "Kai Waldrant", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "KaiWaldrant", - "orcid" : "0009-0003-8555-1361", - "linkedin" : "kaiwaldrant" - } - } - }, - { - "name" : "Leïla Paquay", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "Leila011", - "linkedin" : "leilapaquay" - } - } - }, - { - "name" : "Sai Nirmayi Yasa", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "sainirmayi", - "linkedin" : "sai-nirmayi-yasa" - } - } - }, - { - "name" : "Theodoro Gasperin Terra Camargo", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "theodorogtc@gmail.com", - "github" : "tgaspe", - "linkedin" : "theodoro-gasperin-terra-camargo" - } - } - }, - { - "name" : "Toni Verbeiren", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "tverbeiren", - "linkedin" : "verbeiren" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist and CEO" - } - ] - } - }, - { - "name" : "Weiwei Schultz", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "linkedin" : "weiwei-schultz" - }, - "organizations" : [ - { - "name" : "Janssen R&D US", - "role" : "Associate Director Data Sciences" - } - ] - } - } - ], "keywords" : [ "bioinformatics", "modules", diff --git a/target/nextflow/rseqc/rseqc_inner_distance/.config.vsh.yaml b/target/nextflow/rseqc/rseqc_inner_distance/.config.vsh.yaml index 3913501b..66431e57 100644 --- a/target/nextflow/rseqc/rseqc_inner_distance/.config.vsh.yaml +++ b/target/nextflow/rseqc/rseqc_inner_distance/.config.vsh.yaml @@ -292,7 +292,7 @@ build_info: output: "target/nextflow/rseqc/rseqc_inner_distance" executable: "target/nextflow/rseqc/rseqc_inner_distance/main.nf" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -318,134 +318,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/nextflow/rseqc/rseqc_inner_distance/main.nf b/target/nextflow/rseqc/rseqc_inner_distance/main.nf index 68bc3ffe..1b780395 100644 --- a/target/nextflow/rseqc/rseqc_inner_distance/main.nf +++ b/target/nextflow/rseqc/rseqc_inner_distance/main.nf @@ -3391,7 +3391,7 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/rseqc/rseqc_inner_distance", "viash_version" : "0.9.4", - "git_commit" : "736f18e9887893ca830612b48744fe312fe3c696", + "git_commit" : "666507c86de9150bfbdffdb2dbabc1dbde3c3262", "git_remote" : "https://github.com/viash-hub/biobox" }, "package_config" : { @@ -3408,220 +3408,6 @@ meta = [ ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", ".engines[.type == 'docker'].target_tag := 'v0.4.0'" ], - "authors" : [ - { - "name" : "Robrecht Cannoodt", - "roles" : [ - "author", - "maintainer" - ], - "info" : { - "links" : { - "email" : "robrecht@data-intuitive.com", - "github" : "rcannood", - "orcid" : "0000-0003-3641-729X", - "linkedin" : "robrechtcannoodt" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Science Engineer" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Angela Oliveira Pisco", - "roles" : [ - "author" - ], - "info" : { - "role" : "Contributor", - "links" : { - "github" : "aopisco", - "orcid" : "0000-0003-0142-2355", - "linkedin" : "aopisco" - }, - "organizations" : [ - { - "name" : "Insitro", - "href" : "https://insitro.com", - "role" : "Director of Computational Biology" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Dorien Roosen", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dorien@data-intuitive.com", - "github" : "dorien-er", - "linkedin" : "dorien-roosen" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Dries Schaumont", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dries@data-intuitive.com", - "github" : "DriesSchaumont", - "orcid" : "0000-0002-4389-0440", - "linkedin" : "dries-schaumont" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Emma Rousseau", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "emmarousseau", - "linkedin" : "emmarousseau1" - } - } - }, - { - "name" : "Jakub Majercik", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "jakub@data-intuitive.com", - "github" : "jakubmajercik", - "linkedin" : "jakubmajercik" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Bioinformatics Engineer" - } - ] - } - }, - { - "name" : "Kai Waldrant", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "KaiWaldrant", - "orcid" : "0009-0003-8555-1361", - "linkedin" : "kaiwaldrant" - } - } - }, - { - "name" : "Leïla Paquay", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "Leila011", - "linkedin" : "leilapaquay" - } - } - }, - { - "name" : "Sai Nirmayi Yasa", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "sainirmayi", - "linkedin" : "sai-nirmayi-yasa" - } - } - }, - { - "name" : "Theodoro Gasperin Terra Camargo", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "theodorogtc@gmail.com", - "github" : "tgaspe", - "linkedin" : "theodoro-gasperin-terra-camargo" - } - } - }, - { - "name" : "Toni Verbeiren", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "tverbeiren", - "linkedin" : "verbeiren" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist and CEO" - } - ] - } - }, - { - "name" : "Weiwei Schultz", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "linkedin" : "weiwei-schultz" - }, - "organizations" : [ - { - "name" : "Janssen R&D US", - "role" : "Associate Director Data Sciences" - } - ] - } - } - ], "keywords" : [ "bioinformatics", "modules", diff --git a/target/nextflow/salmon/salmon_index/.config.vsh.yaml b/target/nextflow/salmon/salmon_index/.config.vsh.yaml index 56469161..0843a222 100644 --- a/target/nextflow/salmon/salmon_index/.config.vsh.yaml +++ b/target/nextflow/salmon/salmon_index/.config.vsh.yaml @@ -276,7 +276,7 @@ build_info: output: "target/nextflow/salmon/salmon_index" executable: "target/nextflow/salmon/salmon_index/main.nf" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -302,134 +302,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/nextflow/salmon/salmon_index/main.nf b/target/nextflow/salmon/salmon_index/main.nf index ec665247..3410eefc 100644 --- a/target/nextflow/salmon/salmon_index/main.nf +++ b/target/nextflow/salmon/salmon_index/main.nf @@ -3352,7 +3352,7 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/salmon/salmon_index", "viash_version" : "0.9.4", - "git_commit" : "736f18e9887893ca830612b48744fe312fe3c696", + "git_commit" : "666507c86de9150bfbdffdb2dbabc1dbde3c3262", "git_remote" : "https://github.com/viash-hub/biobox" }, "package_config" : { @@ -3369,220 +3369,6 @@ meta = [ ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", ".engines[.type == 'docker'].target_tag := 'v0.4.0'" ], - "authors" : [ - { - "name" : "Robrecht Cannoodt", - "roles" : [ - "author", - "maintainer" - ], - "info" : { - "links" : { - "email" : "robrecht@data-intuitive.com", - "github" : "rcannood", - "orcid" : "0000-0003-3641-729X", - "linkedin" : "robrechtcannoodt" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Science Engineer" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Angela Oliveira Pisco", - "roles" : [ - "author" - ], - "info" : { - "role" : "Contributor", - "links" : { - "github" : "aopisco", - "orcid" : "0000-0003-0142-2355", - "linkedin" : "aopisco" - }, - "organizations" : [ - { - "name" : "Insitro", - "href" : "https://insitro.com", - "role" : "Director of Computational Biology" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Dorien Roosen", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dorien@data-intuitive.com", - "github" : "dorien-er", - "linkedin" : "dorien-roosen" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Dries Schaumont", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dries@data-intuitive.com", - "github" : "DriesSchaumont", - "orcid" : "0000-0002-4389-0440", - "linkedin" : "dries-schaumont" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Emma Rousseau", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "emmarousseau", - "linkedin" : "emmarousseau1" - } - } - }, - { - "name" : "Jakub Majercik", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "jakub@data-intuitive.com", - "github" : "jakubmajercik", - "linkedin" : "jakubmajercik" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Bioinformatics Engineer" - } - ] - } - }, - { - "name" : "Kai Waldrant", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "KaiWaldrant", - "orcid" : "0009-0003-8555-1361", - "linkedin" : "kaiwaldrant" - } - } - }, - { - "name" : "Leïla Paquay", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "Leila011", - "linkedin" : "leilapaquay" - } - } - }, - { - "name" : "Sai Nirmayi Yasa", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "sainirmayi", - "linkedin" : "sai-nirmayi-yasa" - } - } - }, - { - "name" : "Theodoro Gasperin Terra Camargo", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "theodorogtc@gmail.com", - "github" : "tgaspe", - "linkedin" : "theodoro-gasperin-terra-camargo" - } - } - }, - { - "name" : "Toni Verbeiren", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "tverbeiren", - "linkedin" : "verbeiren" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist and CEO" - } - ] - } - }, - { - "name" : "Weiwei Schultz", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "linkedin" : "weiwei-schultz" - }, - "organizations" : [ - { - "name" : "Janssen R&D US", - "role" : "Associate Director Data Sciences" - } - ] - } - } - ], "keywords" : [ "bioinformatics", "modules", diff --git a/target/nextflow/salmon/salmon_quant/.config.vsh.yaml b/target/nextflow/salmon/salmon_quant/.config.vsh.yaml index 71298758..d9fffde3 100644 --- a/target/nextflow/salmon/salmon_quant/.config.vsh.yaml +++ b/target/nextflow/salmon/salmon_quant/.config.vsh.yaml @@ -1172,7 +1172,7 @@ build_info: output: "target/nextflow/salmon/salmon_quant" executable: "target/nextflow/salmon/salmon_quant/main.nf" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -1198,134 +1198,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/nextflow/salmon/salmon_quant/main.nf b/target/nextflow/salmon/salmon_quant/main.nf index c4e03715..3c258d6d 100644 --- a/target/nextflow/salmon/salmon_quant/main.nf +++ b/target/nextflow/salmon/salmon_quant/main.nf @@ -4187,7 +4187,7 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/salmon/salmon_quant", "viash_version" : "0.9.4", - "git_commit" : "736f18e9887893ca830612b48744fe312fe3c696", + "git_commit" : "666507c86de9150bfbdffdb2dbabc1dbde3c3262", "git_remote" : "https://github.com/viash-hub/biobox" }, "package_config" : { @@ -4204,220 +4204,6 @@ meta = [ ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", ".engines[.type == 'docker'].target_tag := 'v0.4.0'" ], - "authors" : [ - { - "name" : "Robrecht Cannoodt", - "roles" : [ - "author", - "maintainer" - ], - "info" : { - "links" : { - "email" : "robrecht@data-intuitive.com", - "github" : "rcannood", - "orcid" : "0000-0003-3641-729X", - "linkedin" : "robrechtcannoodt" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Science Engineer" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Angela Oliveira Pisco", - "roles" : [ - "author" - ], - "info" : { - "role" : "Contributor", - "links" : { - "github" : "aopisco", - "orcid" : "0000-0003-0142-2355", - "linkedin" : "aopisco" - }, - "organizations" : [ - { - "name" : "Insitro", - "href" : "https://insitro.com", - "role" : "Director of Computational Biology" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Dorien Roosen", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dorien@data-intuitive.com", - "github" : "dorien-er", - "linkedin" : "dorien-roosen" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Dries Schaumont", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dries@data-intuitive.com", - "github" : "DriesSchaumont", - "orcid" : "0000-0002-4389-0440", - "linkedin" : "dries-schaumont" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Emma Rousseau", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "emmarousseau", - "linkedin" : "emmarousseau1" - } - } - }, - { - "name" : "Jakub Majercik", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "jakub@data-intuitive.com", - "github" : "jakubmajercik", - "linkedin" : "jakubmajercik" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Bioinformatics Engineer" - } - ] - } - }, - { - "name" : "Kai Waldrant", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "KaiWaldrant", - "orcid" : "0009-0003-8555-1361", - "linkedin" : "kaiwaldrant" - } - } - }, - { - "name" : "Leïla Paquay", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "Leila011", - "linkedin" : "leilapaquay" - } - } - }, - { - "name" : "Sai Nirmayi Yasa", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "sainirmayi", - "linkedin" : "sai-nirmayi-yasa" - } - } - }, - { - "name" : "Theodoro Gasperin Terra Camargo", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "theodorogtc@gmail.com", - "github" : "tgaspe", - "linkedin" : "theodoro-gasperin-terra-camargo" - } - } - }, - { - "name" : "Toni Verbeiren", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "tverbeiren", - "linkedin" : "verbeiren" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist and CEO" - } - ] - } - }, - { - "name" : "Weiwei Schultz", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "linkedin" : "weiwei-schultz" - }, - "organizations" : [ - { - "name" : "Janssen R&D US", - "role" : "Associate Director Data Sciences" - } - ] - } - } - ], "keywords" : [ "bioinformatics", "modules", diff --git a/target/nextflow/samtools/samtools_collate/.config.vsh.yaml b/target/nextflow/samtools/samtools_collate/.config.vsh.yaml index ab915a82..cf6e8ae1 100644 --- a/target/nextflow/samtools/samtools_collate/.config.vsh.yaml +++ b/target/nextflow/samtools/samtools_collate/.config.vsh.yaml @@ -262,7 +262,7 @@ build_info: output: "target/nextflow/samtools/samtools_collate" executable: "target/nextflow/samtools/samtools_collate/main.nf" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -288,134 +288,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/nextflow/samtools/samtools_collate/main.nf b/target/nextflow/samtools/samtools_collate/main.nf index c37bbbb8..fcd233ab 100644 --- a/target/nextflow/samtools/samtools_collate/main.nf +++ b/target/nextflow/samtools/samtools_collate/main.nf @@ -3362,7 +3362,7 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/samtools/samtools_collate", "viash_version" : "0.9.4", - "git_commit" : "736f18e9887893ca830612b48744fe312fe3c696", + "git_commit" : "666507c86de9150bfbdffdb2dbabc1dbde3c3262", "git_remote" : "https://github.com/viash-hub/biobox" }, "package_config" : { @@ -3379,220 +3379,6 @@ meta = [ ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", ".engines[.type == 'docker'].target_tag := 'v0.4.0'" ], - "authors" : [ - { - "name" : "Robrecht Cannoodt", - "roles" : [ - "author", - "maintainer" - ], - "info" : { - "links" : { - "email" : "robrecht@data-intuitive.com", - "github" : "rcannood", - "orcid" : "0000-0003-3641-729X", - "linkedin" : "robrechtcannoodt" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Science Engineer" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Angela Oliveira Pisco", - "roles" : [ - "author" - ], - "info" : { - "role" : "Contributor", - "links" : { - "github" : "aopisco", - "orcid" : "0000-0003-0142-2355", - "linkedin" : "aopisco" - }, - "organizations" : [ - { - "name" : "Insitro", - "href" : "https://insitro.com", - "role" : "Director of Computational Biology" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Dorien Roosen", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dorien@data-intuitive.com", - "github" : "dorien-er", - "linkedin" : "dorien-roosen" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Dries Schaumont", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dries@data-intuitive.com", - "github" : "DriesSchaumont", - "orcid" : "0000-0002-4389-0440", - "linkedin" : "dries-schaumont" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Emma Rousseau", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "emmarousseau", - "linkedin" : "emmarousseau1" - } - } - }, - { - "name" : "Jakub Majercik", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "jakub@data-intuitive.com", - "github" : "jakubmajercik", - "linkedin" : "jakubmajercik" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Bioinformatics Engineer" - } - ] - } - }, - { - "name" : "Kai Waldrant", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "KaiWaldrant", - "orcid" : "0009-0003-8555-1361", - "linkedin" : "kaiwaldrant" - } - } - }, - { - "name" : "Leïla Paquay", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "Leila011", - "linkedin" : "leilapaquay" - } - } - }, - { - "name" : "Sai Nirmayi Yasa", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "sainirmayi", - "linkedin" : "sai-nirmayi-yasa" - } - } - }, - { - "name" : "Theodoro Gasperin Terra Camargo", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "theodorogtc@gmail.com", - "github" : "tgaspe", - "linkedin" : "theodoro-gasperin-terra-camargo" - } - } - }, - { - "name" : "Toni Verbeiren", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "tverbeiren", - "linkedin" : "verbeiren" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist and CEO" - } - ] - } - }, - { - "name" : "Weiwei Schultz", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "linkedin" : "weiwei-schultz" - }, - "organizations" : [ - { - "name" : "Janssen R&D US", - "role" : "Associate Director Data Sciences" - } - ] - } - } - ], "keywords" : [ "bioinformatics", "modules", diff --git a/target/nextflow/samtools/samtools_faidx/.config.vsh.yaml b/target/nextflow/samtools/samtools_faidx/.config.vsh.yaml index 9df100ee..5cd5d33a 100644 --- a/target/nextflow/samtools/samtools_faidx/.config.vsh.yaml +++ b/target/nextflow/samtools/samtools_faidx/.config.vsh.yaml @@ -241,7 +241,7 @@ build_info: output: "target/nextflow/samtools/samtools_faidx" executable: "target/nextflow/samtools/samtools_faidx/main.nf" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -267,134 +267,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/nextflow/samtools/samtools_faidx/main.nf b/target/nextflow/samtools/samtools_faidx/main.nf index f497e528..6d651766 100644 --- a/target/nextflow/samtools/samtools_faidx/main.nf +++ b/target/nextflow/samtools/samtools_faidx/main.nf @@ -3334,7 +3334,7 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/samtools/samtools_faidx", "viash_version" : "0.9.4", - "git_commit" : "736f18e9887893ca830612b48744fe312fe3c696", + "git_commit" : "666507c86de9150bfbdffdb2dbabc1dbde3c3262", "git_remote" : "https://github.com/viash-hub/biobox" }, "package_config" : { @@ -3351,220 +3351,6 @@ meta = [ ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", ".engines[.type == 'docker'].target_tag := 'v0.4.0'" ], - "authors" : [ - { - "name" : "Robrecht Cannoodt", - "roles" : [ - "author", - "maintainer" - ], - "info" : { - "links" : { - "email" : "robrecht@data-intuitive.com", - "github" : "rcannood", - "orcid" : "0000-0003-3641-729X", - "linkedin" : "robrechtcannoodt" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Science Engineer" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Angela Oliveira Pisco", - "roles" : [ - "author" - ], - "info" : { - "role" : "Contributor", - "links" : { - "github" : "aopisco", - "orcid" : "0000-0003-0142-2355", - "linkedin" : "aopisco" - }, - "organizations" : [ - { - "name" : "Insitro", - "href" : "https://insitro.com", - "role" : "Director of Computational Biology" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Dorien Roosen", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dorien@data-intuitive.com", - "github" : "dorien-er", - "linkedin" : "dorien-roosen" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Dries Schaumont", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dries@data-intuitive.com", - "github" : "DriesSchaumont", - "orcid" : "0000-0002-4389-0440", - "linkedin" : "dries-schaumont" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Emma Rousseau", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "emmarousseau", - "linkedin" : "emmarousseau1" - } - } - }, - { - "name" : "Jakub Majercik", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "jakub@data-intuitive.com", - "github" : "jakubmajercik", - "linkedin" : "jakubmajercik" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Bioinformatics Engineer" - } - ] - } - }, - { - "name" : "Kai Waldrant", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "KaiWaldrant", - "orcid" : "0009-0003-8555-1361", - "linkedin" : "kaiwaldrant" - } - } - }, - { - "name" : "Leïla Paquay", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "Leila011", - "linkedin" : "leilapaquay" - } - } - }, - { - "name" : "Sai Nirmayi Yasa", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "sainirmayi", - "linkedin" : "sai-nirmayi-yasa" - } - } - }, - { - "name" : "Theodoro Gasperin Terra Camargo", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "theodorogtc@gmail.com", - "github" : "tgaspe", - "linkedin" : "theodoro-gasperin-terra-camargo" - } - } - }, - { - "name" : "Toni Verbeiren", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "tverbeiren", - "linkedin" : "verbeiren" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist and CEO" - } - ] - } - }, - { - "name" : "Weiwei Schultz", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "linkedin" : "weiwei-schultz" - }, - "organizations" : [ - { - "name" : "Janssen R&D US", - "role" : "Associate Director Data Sciences" - } - ] - } - } - ], "keywords" : [ "bioinformatics", "modules", diff --git a/target/nextflow/samtools/samtools_fasta/.config.vsh.yaml b/target/nextflow/samtools/samtools_fasta/.config.vsh.yaml index 415897f0..853d250d 100644 --- a/target/nextflow/samtools/samtools_fasta/.config.vsh.yaml +++ b/target/nextflow/samtools/samtools_fasta/.config.vsh.yaml @@ -431,7 +431,7 @@ build_info: output: "target/nextflow/samtools/samtools_fasta" executable: "target/nextflow/samtools/samtools_fasta/main.nf" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -457,134 +457,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/nextflow/samtools/samtools_fasta/main.nf b/target/nextflow/samtools/samtools_fasta/main.nf index c3512c34..3f3ebe58 100644 --- a/target/nextflow/samtools/samtools_fasta/main.nf +++ b/target/nextflow/samtools/samtools_fasta/main.nf @@ -3526,7 +3526,7 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/samtools/samtools_fasta", "viash_version" : "0.9.4", - "git_commit" : "736f18e9887893ca830612b48744fe312fe3c696", + "git_commit" : "666507c86de9150bfbdffdb2dbabc1dbde3c3262", "git_remote" : "https://github.com/viash-hub/biobox" }, "package_config" : { @@ -3543,220 +3543,6 @@ meta = [ ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", ".engines[.type == 'docker'].target_tag := 'v0.4.0'" ], - "authors" : [ - { - "name" : "Robrecht Cannoodt", - "roles" : [ - "author", - "maintainer" - ], - "info" : { - "links" : { - "email" : "robrecht@data-intuitive.com", - "github" : "rcannood", - "orcid" : "0000-0003-3641-729X", - "linkedin" : "robrechtcannoodt" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Science Engineer" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Angela Oliveira Pisco", - "roles" : [ - "author" - ], - "info" : { - "role" : "Contributor", - "links" : { - "github" : "aopisco", - "orcid" : "0000-0003-0142-2355", - "linkedin" : "aopisco" - }, - "organizations" : [ - { - "name" : "Insitro", - "href" : "https://insitro.com", - "role" : "Director of Computational Biology" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Dorien Roosen", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dorien@data-intuitive.com", - "github" : "dorien-er", - "linkedin" : "dorien-roosen" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Dries Schaumont", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dries@data-intuitive.com", - "github" : "DriesSchaumont", - "orcid" : "0000-0002-4389-0440", - "linkedin" : "dries-schaumont" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Emma Rousseau", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "emmarousseau", - "linkedin" : "emmarousseau1" - } - } - }, - { - "name" : "Jakub Majercik", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "jakub@data-intuitive.com", - "github" : "jakubmajercik", - "linkedin" : "jakubmajercik" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Bioinformatics Engineer" - } - ] - } - }, - { - "name" : "Kai Waldrant", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "KaiWaldrant", - "orcid" : "0009-0003-8555-1361", - "linkedin" : "kaiwaldrant" - } - } - }, - { - "name" : "Leïla Paquay", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "Leila011", - "linkedin" : "leilapaquay" - } - } - }, - { - "name" : "Sai Nirmayi Yasa", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "sainirmayi", - "linkedin" : "sai-nirmayi-yasa" - } - } - }, - { - "name" : "Theodoro Gasperin Terra Camargo", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "theodorogtc@gmail.com", - "github" : "tgaspe", - "linkedin" : "theodoro-gasperin-terra-camargo" - } - } - }, - { - "name" : "Toni Verbeiren", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "tverbeiren", - "linkedin" : "verbeiren" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist and CEO" - } - ] - } - }, - { - "name" : "Weiwei Schultz", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "linkedin" : "weiwei-schultz" - }, - "organizations" : [ - { - "name" : "Janssen R&D US", - "role" : "Associate Director Data Sciences" - } - ] - } - } - ], "keywords" : [ "bioinformatics", "modules", diff --git a/target/nextflow/samtools/samtools_fastq/.config.vsh.yaml b/target/nextflow/samtools/samtools_fastq/.config.vsh.yaml index 46c920e8..cf89cba3 100644 --- a/target/nextflow/samtools/samtools_fastq/.config.vsh.yaml +++ b/target/nextflow/samtools/samtools_fastq/.config.vsh.yaml @@ -431,7 +431,7 @@ build_info: output: "target/nextflow/samtools/samtools_fastq" executable: "target/nextflow/samtools/samtools_fastq/main.nf" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -457,134 +457,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/nextflow/samtools/samtools_fastq/main.nf b/target/nextflow/samtools/samtools_fastq/main.nf index 7432de9c..f726205c 100644 --- a/target/nextflow/samtools/samtools_fastq/main.nf +++ b/target/nextflow/samtools/samtools_fastq/main.nf @@ -3526,7 +3526,7 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/samtools/samtools_fastq", "viash_version" : "0.9.4", - "git_commit" : "736f18e9887893ca830612b48744fe312fe3c696", + "git_commit" : "666507c86de9150bfbdffdb2dbabc1dbde3c3262", "git_remote" : "https://github.com/viash-hub/biobox" }, "package_config" : { @@ -3543,220 +3543,6 @@ meta = [ ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", ".engines[.type == 'docker'].target_tag := 'v0.4.0'" ], - "authors" : [ - { - "name" : "Robrecht Cannoodt", - "roles" : [ - "author", - "maintainer" - ], - "info" : { - "links" : { - "email" : "robrecht@data-intuitive.com", - "github" : "rcannood", - "orcid" : "0000-0003-3641-729X", - "linkedin" : "robrechtcannoodt" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Science Engineer" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Angela Oliveira Pisco", - "roles" : [ - "author" - ], - "info" : { - "role" : "Contributor", - "links" : { - "github" : "aopisco", - "orcid" : "0000-0003-0142-2355", - "linkedin" : "aopisco" - }, - "organizations" : [ - { - "name" : "Insitro", - "href" : "https://insitro.com", - "role" : "Director of Computational Biology" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Dorien Roosen", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dorien@data-intuitive.com", - "github" : "dorien-er", - "linkedin" : "dorien-roosen" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Dries Schaumont", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dries@data-intuitive.com", - "github" : "DriesSchaumont", - "orcid" : "0000-0002-4389-0440", - "linkedin" : "dries-schaumont" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Emma Rousseau", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "emmarousseau", - "linkedin" : "emmarousseau1" - } - } - }, - { - "name" : "Jakub Majercik", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "jakub@data-intuitive.com", - "github" : "jakubmajercik", - "linkedin" : "jakubmajercik" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Bioinformatics Engineer" - } - ] - } - }, - { - "name" : "Kai Waldrant", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "KaiWaldrant", - "orcid" : "0009-0003-8555-1361", - "linkedin" : "kaiwaldrant" - } - } - }, - { - "name" : "Leïla Paquay", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "Leila011", - "linkedin" : "leilapaquay" - } - } - }, - { - "name" : "Sai Nirmayi Yasa", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "sainirmayi", - "linkedin" : "sai-nirmayi-yasa" - } - } - }, - { - "name" : "Theodoro Gasperin Terra Camargo", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "theodorogtc@gmail.com", - "github" : "tgaspe", - "linkedin" : "theodoro-gasperin-terra-camargo" - } - } - }, - { - "name" : "Toni Verbeiren", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "tverbeiren", - "linkedin" : "verbeiren" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist and CEO" - } - ] - } - }, - { - "name" : "Weiwei Schultz", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "linkedin" : "weiwei-schultz" - }, - "organizations" : [ - { - "name" : "Janssen R&D US", - "role" : "Associate Director Data Sciences" - } - ] - } - } - ], "keywords" : [ "bioinformatics", "modules", diff --git a/target/nextflow/samtools/samtools_flagstat/.config.vsh.yaml b/target/nextflow/samtools/samtools_flagstat/.config.vsh.yaml index e4a37535..73077a8c 100644 --- a/target/nextflow/samtools/samtools_flagstat/.config.vsh.yaml +++ b/target/nextflow/samtools/samtools_flagstat/.config.vsh.yaml @@ -171,7 +171,7 @@ build_info: output: "target/nextflow/samtools/samtools_flagstat" executable: "target/nextflow/samtools/samtools_flagstat/main.nf" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -197,134 +197,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/nextflow/samtools/samtools_flagstat/main.nf b/target/nextflow/samtools/samtools_flagstat/main.nf index 1ad9b322..2b105e82 100644 --- a/target/nextflow/samtools/samtools_flagstat/main.nf +++ b/target/nextflow/samtools/samtools_flagstat/main.nf @@ -3250,7 +3250,7 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/samtools/samtools_flagstat", "viash_version" : "0.9.4", - "git_commit" : "736f18e9887893ca830612b48744fe312fe3c696", + "git_commit" : "666507c86de9150bfbdffdb2dbabc1dbde3c3262", "git_remote" : "https://github.com/viash-hub/biobox" }, "package_config" : { @@ -3267,220 +3267,6 @@ meta = [ ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", ".engines[.type == 'docker'].target_tag := 'v0.4.0'" ], - "authors" : [ - { - "name" : "Robrecht Cannoodt", - "roles" : [ - "author", - "maintainer" - ], - "info" : { - "links" : { - "email" : "robrecht@data-intuitive.com", - "github" : "rcannood", - "orcid" : "0000-0003-3641-729X", - "linkedin" : "robrechtcannoodt" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Science Engineer" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Angela Oliveira Pisco", - "roles" : [ - "author" - ], - "info" : { - "role" : "Contributor", - "links" : { - "github" : "aopisco", - "orcid" : "0000-0003-0142-2355", - "linkedin" : "aopisco" - }, - "organizations" : [ - { - "name" : "Insitro", - "href" : "https://insitro.com", - "role" : "Director of Computational Biology" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Dorien Roosen", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dorien@data-intuitive.com", - "github" : "dorien-er", - "linkedin" : "dorien-roosen" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Dries Schaumont", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dries@data-intuitive.com", - "github" : "DriesSchaumont", - "orcid" : "0000-0002-4389-0440", - "linkedin" : "dries-schaumont" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Emma Rousseau", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "emmarousseau", - "linkedin" : "emmarousseau1" - } - } - }, - { - "name" : "Jakub Majercik", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "jakub@data-intuitive.com", - "github" : "jakubmajercik", - "linkedin" : "jakubmajercik" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Bioinformatics Engineer" - } - ] - } - }, - { - "name" : "Kai Waldrant", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "KaiWaldrant", - "orcid" : "0009-0003-8555-1361", - "linkedin" : "kaiwaldrant" - } - } - }, - { - "name" : "Leïla Paquay", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "Leila011", - "linkedin" : "leilapaquay" - } - } - }, - { - "name" : "Sai Nirmayi Yasa", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "sainirmayi", - "linkedin" : "sai-nirmayi-yasa" - } - } - }, - { - "name" : "Theodoro Gasperin Terra Camargo", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "theodorogtc@gmail.com", - "github" : "tgaspe", - "linkedin" : "theodoro-gasperin-terra-camargo" - } - } - }, - { - "name" : "Toni Verbeiren", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "tverbeiren", - "linkedin" : "verbeiren" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist and CEO" - } - ] - } - }, - { - "name" : "Weiwei Schultz", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "linkedin" : "weiwei-schultz" - }, - "organizations" : [ - { - "name" : "Janssen R&D US", - "role" : "Associate Director Data Sciences" - } - ] - } - } - ], "keywords" : [ "bioinformatics", "modules", diff --git a/target/nextflow/samtools/samtools_idxstats/.config.vsh.yaml b/target/nextflow/samtools/samtools_idxstats/.config.vsh.yaml index 54ba2306..572fc5b3 100644 --- a/target/nextflow/samtools/samtools_idxstats/.config.vsh.yaml +++ b/target/nextflow/samtools/samtools_idxstats/.config.vsh.yaml @@ -181,7 +181,7 @@ build_info: output: "target/nextflow/samtools/samtools_idxstats" executable: "target/nextflow/samtools/samtools_idxstats/main.nf" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -207,134 +207,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/nextflow/samtools/samtools_idxstats/main.nf b/target/nextflow/samtools/samtools_idxstats/main.nf index a29a3167..c151533a 100644 --- a/target/nextflow/samtools/samtools_idxstats/main.nf +++ b/target/nextflow/samtools/samtools_idxstats/main.nf @@ -3262,7 +3262,7 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/samtools/samtools_idxstats", "viash_version" : "0.9.4", - "git_commit" : "736f18e9887893ca830612b48744fe312fe3c696", + "git_commit" : "666507c86de9150bfbdffdb2dbabc1dbde3c3262", "git_remote" : "https://github.com/viash-hub/biobox" }, "package_config" : { @@ -3279,220 +3279,6 @@ meta = [ ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", ".engines[.type == 'docker'].target_tag := 'v0.4.0'" ], - "authors" : [ - { - "name" : "Robrecht Cannoodt", - "roles" : [ - "author", - "maintainer" - ], - "info" : { - "links" : { - "email" : "robrecht@data-intuitive.com", - "github" : "rcannood", - "orcid" : "0000-0003-3641-729X", - "linkedin" : "robrechtcannoodt" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Science Engineer" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Angela Oliveira Pisco", - "roles" : [ - "author" - ], - "info" : { - "role" : "Contributor", - "links" : { - "github" : "aopisco", - "orcid" : "0000-0003-0142-2355", - "linkedin" : "aopisco" - }, - "organizations" : [ - { - "name" : "Insitro", - "href" : "https://insitro.com", - "role" : "Director of Computational Biology" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Dorien Roosen", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dorien@data-intuitive.com", - "github" : "dorien-er", - "linkedin" : "dorien-roosen" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Dries Schaumont", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dries@data-intuitive.com", - "github" : "DriesSchaumont", - "orcid" : "0000-0002-4389-0440", - "linkedin" : "dries-schaumont" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Emma Rousseau", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "emmarousseau", - "linkedin" : "emmarousseau1" - } - } - }, - { - "name" : "Jakub Majercik", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "jakub@data-intuitive.com", - "github" : "jakubmajercik", - "linkedin" : "jakubmajercik" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Bioinformatics Engineer" - } - ] - } - }, - { - "name" : "Kai Waldrant", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "KaiWaldrant", - "orcid" : "0009-0003-8555-1361", - "linkedin" : "kaiwaldrant" - } - } - }, - { - "name" : "Leïla Paquay", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "Leila011", - "linkedin" : "leilapaquay" - } - } - }, - { - "name" : "Sai Nirmayi Yasa", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "sainirmayi", - "linkedin" : "sai-nirmayi-yasa" - } - } - }, - { - "name" : "Theodoro Gasperin Terra Camargo", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "theodorogtc@gmail.com", - "github" : "tgaspe", - "linkedin" : "theodoro-gasperin-terra-camargo" - } - } - }, - { - "name" : "Toni Verbeiren", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "tverbeiren", - "linkedin" : "verbeiren" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist and CEO" - } - ] - } - }, - { - "name" : "Weiwei Schultz", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "linkedin" : "weiwei-schultz" - }, - "organizations" : [ - { - "name" : "Janssen R&D US", - "role" : "Associate Director Data Sciences" - } - ] - } - } - ], "keywords" : [ "bioinformatics", "modules", diff --git a/target/nextflow/samtools/samtools_index/.config.vsh.yaml b/target/nextflow/samtools/samtools_index/.config.vsh.yaml index ab2a7b24..4bd6242e 100644 --- a/target/nextflow/samtools/samtools_index/.config.vsh.yaml +++ b/target/nextflow/samtools/samtools_index/.config.vsh.yaml @@ -187,7 +187,7 @@ build_info: output: "target/nextflow/samtools/samtools_index" executable: "target/nextflow/samtools/samtools_index/main.nf" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -213,134 +213,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/nextflow/samtools/samtools_index/main.nf b/target/nextflow/samtools/samtools_index/main.nf index 67b33012..94458232 100644 --- a/target/nextflow/samtools/samtools_index/main.nf +++ b/target/nextflow/samtools/samtools_index/main.nf @@ -3275,7 +3275,7 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/samtools/samtools_index", "viash_version" : "0.9.4", - "git_commit" : "736f18e9887893ca830612b48744fe312fe3c696", + "git_commit" : "666507c86de9150bfbdffdb2dbabc1dbde3c3262", "git_remote" : "https://github.com/viash-hub/biobox" }, "package_config" : { @@ -3292,220 +3292,6 @@ meta = [ ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", ".engines[.type == 'docker'].target_tag := 'v0.4.0'" ], - "authors" : [ - { - "name" : "Robrecht Cannoodt", - "roles" : [ - "author", - "maintainer" - ], - "info" : { - "links" : { - "email" : "robrecht@data-intuitive.com", - "github" : "rcannood", - "orcid" : "0000-0003-3641-729X", - "linkedin" : "robrechtcannoodt" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Science Engineer" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Angela Oliveira Pisco", - "roles" : [ - "author" - ], - "info" : { - "role" : "Contributor", - "links" : { - "github" : "aopisco", - "orcid" : "0000-0003-0142-2355", - "linkedin" : "aopisco" - }, - "organizations" : [ - { - "name" : "Insitro", - "href" : "https://insitro.com", - "role" : "Director of Computational Biology" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Dorien Roosen", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dorien@data-intuitive.com", - "github" : "dorien-er", - "linkedin" : "dorien-roosen" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Dries Schaumont", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dries@data-intuitive.com", - "github" : "DriesSchaumont", - "orcid" : "0000-0002-4389-0440", - "linkedin" : "dries-schaumont" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Emma Rousseau", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "emmarousseau", - "linkedin" : "emmarousseau1" - } - } - }, - { - "name" : "Jakub Majercik", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "jakub@data-intuitive.com", - "github" : "jakubmajercik", - "linkedin" : "jakubmajercik" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Bioinformatics Engineer" - } - ] - } - }, - { - "name" : "Kai Waldrant", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "KaiWaldrant", - "orcid" : "0009-0003-8555-1361", - "linkedin" : "kaiwaldrant" - } - } - }, - { - "name" : "Leïla Paquay", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "Leila011", - "linkedin" : "leilapaquay" - } - } - }, - { - "name" : "Sai Nirmayi Yasa", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "sainirmayi", - "linkedin" : "sai-nirmayi-yasa" - } - } - }, - { - "name" : "Theodoro Gasperin Terra Camargo", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "theodorogtc@gmail.com", - "github" : "tgaspe", - "linkedin" : "theodoro-gasperin-terra-camargo" - } - } - }, - { - "name" : "Toni Verbeiren", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "tverbeiren", - "linkedin" : "verbeiren" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist and CEO" - } - ] - } - }, - { - "name" : "Weiwei Schultz", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "linkedin" : "weiwei-schultz" - }, - "organizations" : [ - { - "name" : "Janssen R&D US", - "role" : "Associate Director Data Sciences" - } - ] - } - } - ], "keywords" : [ "bioinformatics", "modules", diff --git a/target/nextflow/samtools/samtools_sort/.config.vsh.yaml b/target/nextflow/samtools/samtools_sort/.config.vsh.yaml index a99ee45f..2fe14a41 100644 --- a/target/nextflow/samtools/samtools_sort/.config.vsh.yaml +++ b/target/nextflow/samtools/samtools_sort/.config.vsh.yaml @@ -330,7 +330,7 @@ build_info: output: "target/nextflow/samtools/samtools_sort" executable: "target/nextflow/samtools/samtools_sort/main.nf" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -356,134 +356,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/nextflow/samtools/samtools_sort/main.nf b/target/nextflow/samtools/samtools_sort/main.nf index 4c376a5a..64f85883 100644 --- a/target/nextflow/samtools/samtools_sort/main.nf +++ b/target/nextflow/samtools/samtools_sort/main.nf @@ -3447,7 +3447,7 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/samtools/samtools_sort", "viash_version" : "0.9.4", - "git_commit" : "736f18e9887893ca830612b48744fe312fe3c696", + "git_commit" : "666507c86de9150bfbdffdb2dbabc1dbde3c3262", "git_remote" : "https://github.com/viash-hub/biobox" }, "package_config" : { @@ -3464,220 +3464,6 @@ meta = [ ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", ".engines[.type == 'docker'].target_tag := 'v0.4.0'" ], - "authors" : [ - { - "name" : "Robrecht Cannoodt", - "roles" : [ - "author", - "maintainer" - ], - "info" : { - "links" : { - "email" : "robrecht@data-intuitive.com", - "github" : "rcannood", - "orcid" : "0000-0003-3641-729X", - "linkedin" : "robrechtcannoodt" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Science Engineer" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Angela Oliveira Pisco", - "roles" : [ - "author" - ], - "info" : { - "role" : "Contributor", - "links" : { - "github" : "aopisco", - "orcid" : "0000-0003-0142-2355", - "linkedin" : "aopisco" - }, - "organizations" : [ - { - "name" : "Insitro", - "href" : "https://insitro.com", - "role" : "Director of Computational Biology" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Dorien Roosen", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dorien@data-intuitive.com", - "github" : "dorien-er", - "linkedin" : "dorien-roosen" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Dries Schaumont", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dries@data-intuitive.com", - "github" : "DriesSchaumont", - "orcid" : "0000-0002-4389-0440", - "linkedin" : "dries-schaumont" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Emma Rousseau", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "emmarousseau", - "linkedin" : "emmarousseau1" - } - } - }, - { - "name" : "Jakub Majercik", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "jakub@data-intuitive.com", - "github" : "jakubmajercik", - "linkedin" : "jakubmajercik" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Bioinformatics Engineer" - } - ] - } - }, - { - "name" : "Kai Waldrant", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "KaiWaldrant", - "orcid" : "0009-0003-8555-1361", - "linkedin" : "kaiwaldrant" - } - } - }, - { - "name" : "Leïla Paquay", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "Leila011", - "linkedin" : "leilapaquay" - } - } - }, - { - "name" : "Sai Nirmayi Yasa", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "sainirmayi", - "linkedin" : "sai-nirmayi-yasa" - } - } - }, - { - "name" : "Theodoro Gasperin Terra Camargo", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "theodorogtc@gmail.com", - "github" : "tgaspe", - "linkedin" : "theodoro-gasperin-terra-camargo" - } - } - }, - { - "name" : "Toni Verbeiren", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "tverbeiren", - "linkedin" : "verbeiren" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist and CEO" - } - ] - } - }, - { - "name" : "Weiwei Schultz", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "linkedin" : "weiwei-schultz" - }, - "organizations" : [ - { - "name" : "Janssen R&D US", - "role" : "Associate Director Data Sciences" - } - ] - } - } - ], "keywords" : [ "bioinformatics", "modules", diff --git a/target/nextflow/samtools/samtools_stats/.config.vsh.yaml b/target/nextflow/samtools/samtools_stats/.config.vsh.yaml index cfaca7c1..9108f73e 100644 --- a/target/nextflow/samtools/samtools_stats/.config.vsh.yaml +++ b/target/nextflow/samtools/samtools_stats/.config.vsh.yaml @@ -399,7 +399,7 @@ build_info: output: "target/nextflow/samtools/samtools_stats" executable: "target/nextflow/samtools/samtools_stats/main.nf" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -425,134 +425,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/nextflow/samtools/samtools_stats/main.nf b/target/nextflow/samtools/samtools_stats/main.nf index a8851e8c..dc877aef 100644 --- a/target/nextflow/samtools/samtools_stats/main.nf +++ b/target/nextflow/samtools/samtools_stats/main.nf @@ -3517,7 +3517,7 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/samtools/samtools_stats", "viash_version" : "0.9.4", - "git_commit" : "736f18e9887893ca830612b48744fe312fe3c696", + "git_commit" : "666507c86de9150bfbdffdb2dbabc1dbde3c3262", "git_remote" : "https://github.com/viash-hub/biobox" }, "package_config" : { @@ -3534,220 +3534,6 @@ meta = [ ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", ".engines[.type == 'docker'].target_tag := 'v0.4.0'" ], - "authors" : [ - { - "name" : "Robrecht Cannoodt", - "roles" : [ - "author", - "maintainer" - ], - "info" : { - "links" : { - "email" : "robrecht@data-intuitive.com", - "github" : "rcannood", - "orcid" : "0000-0003-3641-729X", - "linkedin" : "robrechtcannoodt" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Science Engineer" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Angela Oliveira Pisco", - "roles" : [ - "author" - ], - "info" : { - "role" : "Contributor", - "links" : { - "github" : "aopisco", - "orcid" : "0000-0003-0142-2355", - "linkedin" : "aopisco" - }, - "organizations" : [ - { - "name" : "Insitro", - "href" : "https://insitro.com", - "role" : "Director of Computational Biology" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Dorien Roosen", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dorien@data-intuitive.com", - "github" : "dorien-er", - "linkedin" : "dorien-roosen" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Dries Schaumont", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dries@data-intuitive.com", - "github" : "DriesSchaumont", - "orcid" : "0000-0002-4389-0440", - "linkedin" : "dries-schaumont" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Emma Rousseau", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "emmarousseau", - "linkedin" : "emmarousseau1" - } - } - }, - { - "name" : "Jakub Majercik", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "jakub@data-intuitive.com", - "github" : "jakubmajercik", - "linkedin" : "jakubmajercik" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Bioinformatics Engineer" - } - ] - } - }, - { - "name" : "Kai Waldrant", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "KaiWaldrant", - "orcid" : "0009-0003-8555-1361", - "linkedin" : "kaiwaldrant" - } - } - }, - { - "name" : "Leïla Paquay", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "Leila011", - "linkedin" : "leilapaquay" - } - } - }, - { - "name" : "Sai Nirmayi Yasa", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "sainirmayi", - "linkedin" : "sai-nirmayi-yasa" - } - } - }, - { - "name" : "Theodoro Gasperin Terra Camargo", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "theodorogtc@gmail.com", - "github" : "tgaspe", - "linkedin" : "theodoro-gasperin-terra-camargo" - } - } - }, - { - "name" : "Toni Verbeiren", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "tverbeiren", - "linkedin" : "verbeiren" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist and CEO" - } - ] - } - }, - { - "name" : "Weiwei Schultz", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "linkedin" : "weiwei-schultz" - }, - "organizations" : [ - { - "name" : "Janssen R&D US", - "role" : "Associate Director Data Sciences" - } - ] - } - } - ], "keywords" : [ "bioinformatics", "modules", diff --git a/target/nextflow/samtools/samtools_view/.config.vsh.yaml b/target/nextflow/samtools/samtools_view/.config.vsh.yaml index 094f1742..d4606f19 100644 --- a/target/nextflow/samtools/samtools_view/.config.vsh.yaml +++ b/target/nextflow/samtools/samtools_view/.config.vsh.yaml @@ -663,7 +663,7 @@ build_info: output: "target/nextflow/samtools/samtools_view" executable: "target/nextflow/samtools/samtools_view/main.nf" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -689,134 +689,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/nextflow/samtools/samtools_view/main.nf b/target/nextflow/samtools/samtools_view/main.nf index 1d2cac73..879da95c 100644 --- a/target/nextflow/samtools/samtools_view/main.nf +++ b/target/nextflow/samtools/samtools_view/main.nf @@ -3698,7 +3698,7 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/samtools/samtools_view", "viash_version" : "0.9.4", - "git_commit" : "736f18e9887893ca830612b48744fe312fe3c696", + "git_commit" : "666507c86de9150bfbdffdb2dbabc1dbde3c3262", "git_remote" : "https://github.com/viash-hub/biobox" }, "package_config" : { @@ -3715,220 +3715,6 @@ meta = [ ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", ".engines[.type == 'docker'].target_tag := 'v0.4.0'" ], - "authors" : [ - { - "name" : "Robrecht Cannoodt", - "roles" : [ - "author", - "maintainer" - ], - "info" : { - "links" : { - "email" : "robrecht@data-intuitive.com", - "github" : "rcannood", - "orcid" : "0000-0003-3641-729X", - "linkedin" : "robrechtcannoodt" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Science Engineer" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Angela Oliveira Pisco", - "roles" : [ - "author" - ], - "info" : { - "role" : "Contributor", - "links" : { - "github" : "aopisco", - "orcid" : "0000-0003-0142-2355", - "linkedin" : "aopisco" - }, - "organizations" : [ - { - "name" : "Insitro", - "href" : "https://insitro.com", - "role" : "Director of Computational Biology" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Dorien Roosen", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dorien@data-intuitive.com", - "github" : "dorien-er", - "linkedin" : "dorien-roosen" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Dries Schaumont", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dries@data-intuitive.com", - "github" : "DriesSchaumont", - "orcid" : "0000-0002-4389-0440", - "linkedin" : "dries-schaumont" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Emma Rousseau", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "emmarousseau", - "linkedin" : "emmarousseau1" - } - } - }, - { - "name" : "Jakub Majercik", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "jakub@data-intuitive.com", - "github" : "jakubmajercik", - "linkedin" : "jakubmajercik" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Bioinformatics Engineer" - } - ] - } - }, - { - "name" : "Kai Waldrant", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "KaiWaldrant", - "orcid" : "0009-0003-8555-1361", - "linkedin" : "kaiwaldrant" - } - } - }, - { - "name" : "Leïla Paquay", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "Leila011", - "linkedin" : "leilapaquay" - } - } - }, - { - "name" : "Sai Nirmayi Yasa", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "sainirmayi", - "linkedin" : "sai-nirmayi-yasa" - } - } - }, - { - "name" : "Theodoro Gasperin Terra Camargo", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "theodorogtc@gmail.com", - "github" : "tgaspe", - "linkedin" : "theodoro-gasperin-terra-camargo" - } - } - }, - { - "name" : "Toni Verbeiren", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "tverbeiren", - "linkedin" : "verbeiren" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist and CEO" - } - ] - } - }, - { - "name" : "Weiwei Schultz", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "linkedin" : "weiwei-schultz" - }, - "organizations" : [ - { - "name" : "Janssen R&D US", - "role" : "Associate Director Data Sciences" - } - ] - } - } - ], "keywords" : [ "bioinformatics", "modules", diff --git a/target/nextflow/seqtk/seqtk_sample/.config.vsh.yaml b/target/nextflow/seqtk/seqtk_sample/.config.vsh.yaml index 2535e7f6..e7f73532 100644 --- a/target/nextflow/seqtk/seqtk_sample/.config.vsh.yaml +++ b/target/nextflow/seqtk/seqtk_sample/.config.vsh.yaml @@ -176,7 +176,7 @@ build_info: output: "target/nextflow/seqtk/seqtk_sample" executable: "target/nextflow/seqtk/seqtk_sample/main.nf" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -202,134 +202,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/nextflow/seqtk/seqtk_sample/main.nf b/target/nextflow/seqtk/seqtk_sample/main.nf index 293cf148..c4849031 100644 --- a/target/nextflow/seqtk/seqtk_sample/main.nf +++ b/target/nextflow/seqtk/seqtk_sample/main.nf @@ -3260,7 +3260,7 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/seqtk/seqtk_sample", "viash_version" : "0.9.4", - "git_commit" : "736f18e9887893ca830612b48744fe312fe3c696", + "git_commit" : "666507c86de9150bfbdffdb2dbabc1dbde3c3262", "git_remote" : "https://github.com/viash-hub/biobox" }, "package_config" : { @@ -3277,220 +3277,6 @@ meta = [ ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", ".engines[.type == 'docker'].target_tag := 'v0.4.0'" ], - "authors" : [ - { - "name" : "Robrecht Cannoodt", - "roles" : [ - "author", - "maintainer" - ], - "info" : { - "links" : { - "email" : "robrecht@data-intuitive.com", - "github" : "rcannood", - "orcid" : "0000-0003-3641-729X", - "linkedin" : "robrechtcannoodt" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Science Engineer" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Angela Oliveira Pisco", - "roles" : [ - "author" - ], - "info" : { - "role" : "Contributor", - "links" : { - "github" : "aopisco", - "orcid" : "0000-0003-0142-2355", - "linkedin" : "aopisco" - }, - "organizations" : [ - { - "name" : "Insitro", - "href" : "https://insitro.com", - "role" : "Director of Computational Biology" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Dorien Roosen", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dorien@data-intuitive.com", - "github" : "dorien-er", - "linkedin" : "dorien-roosen" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Dries Schaumont", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dries@data-intuitive.com", - "github" : "DriesSchaumont", - "orcid" : "0000-0002-4389-0440", - "linkedin" : "dries-schaumont" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Emma Rousseau", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "emmarousseau", - "linkedin" : "emmarousseau1" - } - } - }, - { - "name" : "Jakub Majercik", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "jakub@data-intuitive.com", - "github" : "jakubmajercik", - "linkedin" : "jakubmajercik" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Bioinformatics Engineer" - } - ] - } - }, - { - "name" : "Kai Waldrant", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "KaiWaldrant", - "orcid" : "0009-0003-8555-1361", - "linkedin" : "kaiwaldrant" - } - } - }, - { - "name" : "Leïla Paquay", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "Leila011", - "linkedin" : "leilapaquay" - } - } - }, - { - "name" : "Sai Nirmayi Yasa", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "sainirmayi", - "linkedin" : "sai-nirmayi-yasa" - } - } - }, - { - "name" : "Theodoro Gasperin Terra Camargo", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "theodorogtc@gmail.com", - "github" : "tgaspe", - "linkedin" : "theodoro-gasperin-terra-camargo" - } - } - }, - { - "name" : "Toni Verbeiren", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "tverbeiren", - "linkedin" : "verbeiren" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist and CEO" - } - ] - } - }, - { - "name" : "Weiwei Schultz", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "linkedin" : "weiwei-schultz" - }, - "organizations" : [ - { - "name" : "Janssen R&D US", - "role" : "Associate Director Data Sciences" - } - ] - } - } - ], "keywords" : [ "bioinformatics", "modules", diff --git a/target/nextflow/seqtk/seqtk_subseq/.config.vsh.yaml b/target/nextflow/seqtk/seqtk_subseq/.config.vsh.yaml index 7650068f..6adf51ea 100644 --- a/target/nextflow/seqtk/seqtk_subseq/.config.vsh.yaml +++ b/target/nextflow/seqtk/seqtk_subseq/.config.vsh.yaml @@ -195,7 +195,7 @@ build_info: output: "target/nextflow/seqtk/seqtk_subseq" executable: "target/nextflow/seqtk/seqtk_subseq/main.nf" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -221,134 +221,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/nextflow/seqtk/seqtk_subseq/main.nf b/target/nextflow/seqtk/seqtk_subseq/main.nf index 33da13c4..256cb474 100644 --- a/target/nextflow/seqtk/seqtk_subseq/main.nf +++ b/target/nextflow/seqtk/seqtk_subseq/main.nf @@ -3283,7 +3283,7 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/seqtk/seqtk_subseq", "viash_version" : "0.9.4", - "git_commit" : "736f18e9887893ca830612b48744fe312fe3c696", + "git_commit" : "666507c86de9150bfbdffdb2dbabc1dbde3c3262", "git_remote" : "https://github.com/viash-hub/biobox" }, "package_config" : { @@ -3300,220 +3300,6 @@ meta = [ ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", ".engines[.type == 'docker'].target_tag := 'v0.4.0'" ], - "authors" : [ - { - "name" : "Robrecht Cannoodt", - "roles" : [ - "author", - "maintainer" - ], - "info" : { - "links" : { - "email" : "robrecht@data-intuitive.com", - "github" : "rcannood", - "orcid" : "0000-0003-3641-729X", - "linkedin" : "robrechtcannoodt" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Science Engineer" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Angela Oliveira Pisco", - "roles" : [ - "author" - ], - "info" : { - "role" : "Contributor", - "links" : { - "github" : "aopisco", - "orcid" : "0000-0003-0142-2355", - "linkedin" : "aopisco" - }, - "organizations" : [ - { - "name" : "Insitro", - "href" : "https://insitro.com", - "role" : "Director of Computational Biology" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Dorien Roosen", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dorien@data-intuitive.com", - "github" : "dorien-er", - "linkedin" : "dorien-roosen" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Dries Schaumont", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dries@data-intuitive.com", - "github" : "DriesSchaumont", - "orcid" : "0000-0002-4389-0440", - "linkedin" : "dries-schaumont" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Emma Rousseau", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "emmarousseau", - "linkedin" : "emmarousseau1" - } - } - }, - { - "name" : "Jakub Majercik", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "jakub@data-intuitive.com", - "github" : "jakubmajercik", - "linkedin" : "jakubmajercik" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Bioinformatics Engineer" - } - ] - } - }, - { - "name" : "Kai Waldrant", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "KaiWaldrant", - "orcid" : "0009-0003-8555-1361", - "linkedin" : "kaiwaldrant" - } - } - }, - { - "name" : "Leïla Paquay", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "Leila011", - "linkedin" : "leilapaquay" - } - } - }, - { - "name" : "Sai Nirmayi Yasa", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "sainirmayi", - "linkedin" : "sai-nirmayi-yasa" - } - } - }, - { - "name" : "Theodoro Gasperin Terra Camargo", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "theodorogtc@gmail.com", - "github" : "tgaspe", - "linkedin" : "theodoro-gasperin-terra-camargo" - } - } - }, - { - "name" : "Toni Verbeiren", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "tverbeiren", - "linkedin" : "verbeiren" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist and CEO" - } - ] - } - }, - { - "name" : "Weiwei Schultz", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "linkedin" : "weiwei-schultz" - }, - "organizations" : [ - { - "name" : "Janssen R&D US", - "role" : "Associate Director Data Sciences" - } - ] - } - } - ], "keywords" : [ "bioinformatics", "modules", diff --git a/target/nextflow/sgdemux/.config.vsh.yaml b/target/nextflow/sgdemux/.config.vsh.yaml index 5cabe201..10ffbf09 100644 --- a/target/nextflow/sgdemux/.config.vsh.yaml +++ b/target/nextflow/sgdemux/.config.vsh.yaml @@ -433,7 +433,7 @@ build_info: output: "target/nextflow/sgdemux" executable: "target/nextflow/sgdemux/main.nf" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -459,134 +459,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/nextflow/sgdemux/main.nf b/target/nextflow/sgdemux/main.nf index 0cbfe995..5b5f85ed 100644 --- a/target/nextflow/sgdemux/main.nf +++ b/target/nextflow/sgdemux/main.nf @@ -3534,7 +3534,7 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/sgdemux", "viash_version" : "0.9.4", - "git_commit" : "736f18e9887893ca830612b48744fe312fe3c696", + "git_commit" : "666507c86de9150bfbdffdb2dbabc1dbde3c3262", "git_remote" : "https://github.com/viash-hub/biobox" }, "package_config" : { @@ -3551,220 +3551,6 @@ meta = [ ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", ".engines[.type == 'docker'].target_tag := 'v0.4.0'" ], - "authors" : [ - { - "name" : "Robrecht Cannoodt", - "roles" : [ - "author", - "maintainer" - ], - "info" : { - "links" : { - "email" : "robrecht@data-intuitive.com", - "github" : "rcannood", - "orcid" : "0000-0003-3641-729X", - "linkedin" : "robrechtcannoodt" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Science Engineer" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Angela Oliveira Pisco", - "roles" : [ - "author" - ], - "info" : { - "role" : "Contributor", - "links" : { - "github" : "aopisco", - "orcid" : "0000-0003-0142-2355", - "linkedin" : "aopisco" - }, - "organizations" : [ - { - "name" : "Insitro", - "href" : "https://insitro.com", - "role" : "Director of Computational Biology" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Dorien Roosen", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dorien@data-intuitive.com", - "github" : "dorien-er", - "linkedin" : "dorien-roosen" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Dries Schaumont", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dries@data-intuitive.com", - "github" : "DriesSchaumont", - "orcid" : "0000-0002-4389-0440", - "linkedin" : "dries-schaumont" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Emma Rousseau", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "emmarousseau", - "linkedin" : "emmarousseau1" - } - } - }, - { - "name" : "Jakub Majercik", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "jakub@data-intuitive.com", - "github" : "jakubmajercik", - "linkedin" : "jakubmajercik" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Bioinformatics Engineer" - } - ] - } - }, - { - "name" : "Kai Waldrant", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "KaiWaldrant", - "orcid" : "0009-0003-8555-1361", - "linkedin" : "kaiwaldrant" - } - } - }, - { - "name" : "Leïla Paquay", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "Leila011", - "linkedin" : "leilapaquay" - } - } - }, - { - "name" : "Sai Nirmayi Yasa", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "sainirmayi", - "linkedin" : "sai-nirmayi-yasa" - } - } - }, - { - "name" : "Theodoro Gasperin Terra Camargo", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "theodorogtc@gmail.com", - "github" : "tgaspe", - "linkedin" : "theodoro-gasperin-terra-camargo" - } - } - }, - { - "name" : "Toni Verbeiren", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "tverbeiren", - "linkedin" : "verbeiren" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist and CEO" - } - ] - } - }, - { - "name" : "Weiwei Schultz", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "linkedin" : "weiwei-schultz" - }, - "organizations" : [ - { - "name" : "Janssen R&D US", - "role" : "Associate Director Data Sciences" - } - ] - } - } - ], "keywords" : [ "bioinformatics", "modules", diff --git a/target/nextflow/snpeff/snpeff_ann/.config.vsh.yaml b/target/nextflow/snpeff/snpeff_ann/.config.vsh.yaml index b6abc5c1..16cca308 100644 --- a/target/nextflow/snpeff/snpeff_ann/.config.vsh.yaml +++ b/target/nextflow/snpeff/snpeff_ann/.config.vsh.yaml @@ -644,7 +644,7 @@ build_info: output: "target/nextflow/snpeff/snpeff_ann" executable: "target/nextflow/snpeff/snpeff_ann/main.nf" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -670,134 +670,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/nextflow/snpeff/snpeff_ann/main.nf b/target/nextflow/snpeff/snpeff_ann/main.nf index 379999b9..f870779d 100644 --- a/target/nextflow/snpeff/snpeff_ann/main.nf +++ b/target/nextflow/snpeff/snpeff_ann/main.nf @@ -3809,7 +3809,7 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/snpeff/snpeff_ann", "viash_version" : "0.9.4", - "git_commit" : "736f18e9887893ca830612b48744fe312fe3c696", + "git_commit" : "666507c86de9150bfbdffdb2dbabc1dbde3c3262", "git_remote" : "https://github.com/viash-hub/biobox" }, "package_config" : { @@ -3826,220 +3826,6 @@ meta = [ ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", ".engines[.type == 'docker'].target_tag := 'v0.4.0'" ], - "authors" : [ - { - "name" : "Robrecht Cannoodt", - "roles" : [ - "author", - "maintainer" - ], - "info" : { - "links" : { - "email" : "robrecht@data-intuitive.com", - "github" : "rcannood", - "orcid" : "0000-0003-3641-729X", - "linkedin" : "robrechtcannoodt" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Science Engineer" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Angela Oliveira Pisco", - "roles" : [ - "author" - ], - "info" : { - "role" : "Contributor", - "links" : { - "github" : "aopisco", - "orcid" : "0000-0003-0142-2355", - "linkedin" : "aopisco" - }, - "organizations" : [ - { - "name" : "Insitro", - "href" : "https://insitro.com", - "role" : "Director of Computational Biology" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Dorien Roosen", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dorien@data-intuitive.com", - "github" : "dorien-er", - "linkedin" : "dorien-roosen" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Dries Schaumont", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dries@data-intuitive.com", - "github" : "DriesSchaumont", - "orcid" : "0000-0002-4389-0440", - "linkedin" : "dries-schaumont" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Emma Rousseau", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "emmarousseau", - "linkedin" : "emmarousseau1" - } - } - }, - { - "name" : "Jakub Majercik", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "jakub@data-intuitive.com", - "github" : "jakubmajercik", - "linkedin" : "jakubmajercik" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Bioinformatics Engineer" - } - ] - } - }, - { - "name" : "Kai Waldrant", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "KaiWaldrant", - "orcid" : "0009-0003-8555-1361", - "linkedin" : "kaiwaldrant" - } - } - }, - { - "name" : "Leïla Paquay", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "Leila011", - "linkedin" : "leilapaquay" - } - } - }, - { - "name" : "Sai Nirmayi Yasa", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "sainirmayi", - "linkedin" : "sai-nirmayi-yasa" - } - } - }, - { - "name" : "Theodoro Gasperin Terra Camargo", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "theodorogtc@gmail.com", - "github" : "tgaspe", - "linkedin" : "theodoro-gasperin-terra-camargo" - } - } - }, - { - "name" : "Toni Verbeiren", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "tverbeiren", - "linkedin" : "verbeiren" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist and CEO" - } - ] - } - }, - { - "name" : "Weiwei Schultz", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "linkedin" : "weiwei-schultz" - }, - "organizations" : [ - { - "name" : "Janssen R&D US", - "role" : "Associate Director Data Sciences" - } - ] - } - } - ], "keywords" : [ "bioinformatics", "modules", diff --git a/target/nextflow/sortmerna/.config.vsh.yaml b/target/nextflow/sortmerna/.config.vsh.yaml index b86f9e05..1ac16829 100644 --- a/target/nextflow/sortmerna/.config.vsh.yaml +++ b/target/nextflow/sortmerna/.config.vsh.yaml @@ -597,7 +597,7 @@ build_info: output: "target/nextflow/sortmerna" executable: "target/nextflow/sortmerna/main.nf" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -623,134 +623,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/nextflow/sortmerna/main.nf b/target/nextflow/sortmerna/main.nf index 200df132..7380f9d3 100644 --- a/target/nextflow/sortmerna/main.nf +++ b/target/nextflow/sortmerna/main.nf @@ -3690,7 +3690,7 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/sortmerna", "viash_version" : "0.9.4", - "git_commit" : "736f18e9887893ca830612b48744fe312fe3c696", + "git_commit" : "666507c86de9150bfbdffdb2dbabc1dbde3c3262", "git_remote" : "https://github.com/viash-hub/biobox" }, "package_config" : { @@ -3707,220 +3707,6 @@ meta = [ ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", ".engines[.type == 'docker'].target_tag := 'v0.4.0'" ], - "authors" : [ - { - "name" : "Robrecht Cannoodt", - "roles" : [ - "author", - "maintainer" - ], - "info" : { - "links" : { - "email" : "robrecht@data-intuitive.com", - "github" : "rcannood", - "orcid" : "0000-0003-3641-729X", - "linkedin" : "robrechtcannoodt" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Science Engineer" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Angela Oliveira Pisco", - "roles" : [ - "author" - ], - "info" : { - "role" : "Contributor", - "links" : { - "github" : "aopisco", - "orcid" : "0000-0003-0142-2355", - "linkedin" : "aopisco" - }, - "organizations" : [ - { - "name" : "Insitro", - "href" : "https://insitro.com", - "role" : "Director of Computational Biology" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Dorien Roosen", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dorien@data-intuitive.com", - "github" : "dorien-er", - "linkedin" : "dorien-roosen" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Dries Schaumont", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dries@data-intuitive.com", - "github" : "DriesSchaumont", - "orcid" : "0000-0002-4389-0440", - "linkedin" : "dries-schaumont" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Emma Rousseau", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "emmarousseau", - "linkedin" : "emmarousseau1" - } - } - }, - { - "name" : "Jakub Majercik", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "jakub@data-intuitive.com", - "github" : "jakubmajercik", - "linkedin" : "jakubmajercik" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Bioinformatics Engineer" - } - ] - } - }, - { - "name" : "Kai Waldrant", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "KaiWaldrant", - "orcid" : "0009-0003-8555-1361", - "linkedin" : "kaiwaldrant" - } - } - }, - { - "name" : "Leïla Paquay", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "Leila011", - "linkedin" : "leilapaquay" - } - } - }, - { - "name" : "Sai Nirmayi Yasa", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "sainirmayi", - "linkedin" : "sai-nirmayi-yasa" - } - } - }, - { - "name" : "Theodoro Gasperin Terra Camargo", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "theodorogtc@gmail.com", - "github" : "tgaspe", - "linkedin" : "theodoro-gasperin-terra-camargo" - } - } - }, - { - "name" : "Toni Verbeiren", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "tverbeiren", - "linkedin" : "verbeiren" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist and CEO" - } - ] - } - }, - { - "name" : "Weiwei Schultz", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "linkedin" : "weiwei-schultz" - }, - "organizations" : [ - { - "name" : "Janssen R&D US", - "role" : "Associate Director Data Sciences" - } - ] - } - } - ], "keywords" : [ "bioinformatics", "modules", diff --git a/target/nextflow/star/star_align_reads/.config.vsh.yaml b/target/nextflow/star/star_align_reads/.config.vsh.yaml index c13b377f..ec033884 100644 --- a/target/nextflow/star/star_align_reads/.config.vsh.yaml +++ b/target/nextflow/star/star_align_reads/.config.vsh.yaml @@ -2671,7 +2671,7 @@ build_info: output: "target/nextflow/star/star_align_reads" executable: "target/nextflow/star/star_align_reads/main.nf" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -2697,134 +2697,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/nextflow/star/star_align_reads/main.nf b/target/nextflow/star/star_align_reads/main.nf index 4dc789de..62ca973e 100644 --- a/target/nextflow/star/star_align_reads/main.nf +++ b/target/nextflow/star/star_align_reads/main.nf @@ -6178,7 +6178,7 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/star/star_align_reads", "viash_version" : "0.9.4", - "git_commit" : "736f18e9887893ca830612b48744fe312fe3c696", + "git_commit" : "666507c86de9150bfbdffdb2dbabc1dbde3c3262", "git_remote" : "https://github.com/viash-hub/biobox" }, "package_config" : { @@ -6195,220 +6195,6 @@ meta = [ ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", ".engines[.type == 'docker'].target_tag := 'v0.4.0'" ], - "authors" : [ - { - "name" : "Robrecht Cannoodt", - "roles" : [ - "author", - "maintainer" - ], - "info" : { - "links" : { - "email" : "robrecht@data-intuitive.com", - "github" : "rcannood", - "orcid" : "0000-0003-3641-729X", - "linkedin" : "robrechtcannoodt" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Science Engineer" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Angela Oliveira Pisco", - "roles" : [ - "author" - ], - "info" : { - "role" : "Contributor", - "links" : { - "github" : "aopisco", - "orcid" : "0000-0003-0142-2355", - "linkedin" : "aopisco" - }, - "organizations" : [ - { - "name" : "Insitro", - "href" : "https://insitro.com", - "role" : "Director of Computational Biology" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Dorien Roosen", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dorien@data-intuitive.com", - "github" : "dorien-er", - "linkedin" : "dorien-roosen" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Dries Schaumont", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dries@data-intuitive.com", - "github" : "DriesSchaumont", - "orcid" : "0000-0002-4389-0440", - "linkedin" : "dries-schaumont" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Emma Rousseau", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "emmarousseau", - "linkedin" : "emmarousseau1" - } - } - }, - { - "name" : "Jakub Majercik", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "jakub@data-intuitive.com", - "github" : "jakubmajercik", - "linkedin" : "jakubmajercik" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Bioinformatics Engineer" - } - ] - } - }, - { - "name" : "Kai Waldrant", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "KaiWaldrant", - "orcid" : "0009-0003-8555-1361", - "linkedin" : "kaiwaldrant" - } - } - }, - { - "name" : "Leïla Paquay", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "Leila011", - "linkedin" : "leilapaquay" - } - } - }, - { - "name" : "Sai Nirmayi Yasa", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "sainirmayi", - "linkedin" : "sai-nirmayi-yasa" - } - } - }, - { - "name" : "Theodoro Gasperin Terra Camargo", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "theodorogtc@gmail.com", - "github" : "tgaspe", - "linkedin" : "theodoro-gasperin-terra-camargo" - } - } - }, - { - "name" : "Toni Verbeiren", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "tverbeiren", - "linkedin" : "verbeiren" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist and CEO" - } - ] - } - }, - { - "name" : "Weiwei Schultz", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "linkedin" : "weiwei-schultz" - }, - "organizations" : [ - { - "name" : "Janssen R&D US", - "role" : "Associate Director Data Sciences" - } - ] - } - } - ], "keywords" : [ "bioinformatics", "modules", diff --git a/target/nextflow/star/star_genome_generate/.config.vsh.yaml b/target/nextflow/star/star_genome_generate/.config.vsh.yaml index 295238fe..44de1116 100644 --- a/target/nextflow/star/star_genome_generate/.config.vsh.yaml +++ b/target/nextflow/star/star_genome_generate/.config.vsh.yaml @@ -332,7 +332,7 @@ build_info: output: "target/nextflow/star/star_genome_generate" executable: "target/nextflow/star/star_genome_generate/main.nf" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -358,134 +358,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/nextflow/star/star_genome_generate/main.nf b/target/nextflow/star/star_genome_generate/main.nf index 78587541..4add86b0 100644 --- a/target/nextflow/star/star_genome_generate/main.nf +++ b/target/nextflow/star/star_genome_generate/main.nf @@ -3418,7 +3418,7 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/star/star_genome_generate", "viash_version" : "0.9.4", - "git_commit" : "736f18e9887893ca830612b48744fe312fe3c696", + "git_commit" : "666507c86de9150bfbdffdb2dbabc1dbde3c3262", "git_remote" : "https://github.com/viash-hub/biobox" }, "package_config" : { @@ -3435,220 +3435,6 @@ meta = [ ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", ".engines[.type == 'docker'].target_tag := 'v0.4.0'" ], - "authors" : [ - { - "name" : "Robrecht Cannoodt", - "roles" : [ - "author", - "maintainer" - ], - "info" : { - "links" : { - "email" : "robrecht@data-intuitive.com", - "github" : "rcannood", - "orcid" : "0000-0003-3641-729X", - "linkedin" : "robrechtcannoodt" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Science Engineer" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Angela Oliveira Pisco", - "roles" : [ - "author" - ], - "info" : { - "role" : "Contributor", - "links" : { - "github" : "aopisco", - "orcid" : "0000-0003-0142-2355", - "linkedin" : "aopisco" - }, - "organizations" : [ - { - "name" : "Insitro", - "href" : "https://insitro.com", - "role" : "Director of Computational Biology" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Dorien Roosen", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dorien@data-intuitive.com", - "github" : "dorien-er", - "linkedin" : "dorien-roosen" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Dries Schaumont", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dries@data-intuitive.com", - "github" : "DriesSchaumont", - "orcid" : "0000-0002-4389-0440", - "linkedin" : "dries-schaumont" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Emma Rousseau", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "emmarousseau", - "linkedin" : "emmarousseau1" - } - } - }, - { - "name" : "Jakub Majercik", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "jakub@data-intuitive.com", - "github" : "jakubmajercik", - "linkedin" : "jakubmajercik" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Bioinformatics Engineer" - } - ] - } - }, - { - "name" : "Kai Waldrant", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "KaiWaldrant", - "orcid" : "0009-0003-8555-1361", - "linkedin" : "kaiwaldrant" - } - } - }, - { - "name" : "Leïla Paquay", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "Leila011", - "linkedin" : "leilapaquay" - } - } - }, - { - "name" : "Sai Nirmayi Yasa", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "sainirmayi", - "linkedin" : "sai-nirmayi-yasa" - } - } - }, - { - "name" : "Theodoro Gasperin Terra Camargo", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "theodorogtc@gmail.com", - "github" : "tgaspe", - "linkedin" : "theodoro-gasperin-terra-camargo" - } - } - }, - { - "name" : "Toni Verbeiren", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "tverbeiren", - "linkedin" : "verbeiren" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist and CEO" - } - ] - } - }, - { - "name" : "Weiwei Schultz", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "linkedin" : "weiwei-schultz" - }, - "organizations" : [ - { - "name" : "Janssen R&D US", - "role" : "Associate Director Data Sciences" - } - ] - } - } - ], "keywords" : [ "bioinformatics", "modules", diff --git a/target/nextflow/trimgalore/.config.vsh.yaml b/target/nextflow/trimgalore/.config.vsh.yaml index ec4c8dfd..1038af79 100644 --- a/target/nextflow/trimgalore/.config.vsh.yaml +++ b/target/nextflow/trimgalore/.config.vsh.yaml @@ -769,7 +769,7 @@ build_info: output: "target/nextflow/trimgalore" executable: "target/nextflow/trimgalore/main.nf" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -795,134 +795,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/nextflow/trimgalore/main.nf b/target/nextflow/trimgalore/main.nf index a39a346d..f8726f18 100644 --- a/target/nextflow/trimgalore/main.nf +++ b/target/nextflow/trimgalore/main.nf @@ -3783,7 +3783,7 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/trimgalore", "viash_version" : "0.9.4", - "git_commit" : "736f18e9887893ca830612b48744fe312fe3c696", + "git_commit" : "666507c86de9150bfbdffdb2dbabc1dbde3c3262", "git_remote" : "https://github.com/viash-hub/biobox" }, "package_config" : { @@ -3800,220 +3800,6 @@ meta = [ ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", ".engines[.type == 'docker'].target_tag := 'v0.4.0'" ], - "authors" : [ - { - "name" : "Robrecht Cannoodt", - "roles" : [ - "author", - "maintainer" - ], - "info" : { - "links" : { - "email" : "robrecht@data-intuitive.com", - "github" : "rcannood", - "orcid" : "0000-0003-3641-729X", - "linkedin" : "robrechtcannoodt" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Science Engineer" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Angela Oliveira Pisco", - "roles" : [ - "author" - ], - "info" : { - "role" : "Contributor", - "links" : { - "github" : "aopisco", - "orcid" : "0000-0003-0142-2355", - "linkedin" : "aopisco" - }, - "organizations" : [ - { - "name" : "Insitro", - "href" : "https://insitro.com", - "role" : "Director of Computational Biology" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Dorien Roosen", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dorien@data-intuitive.com", - "github" : "dorien-er", - "linkedin" : "dorien-roosen" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Dries Schaumont", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dries@data-intuitive.com", - "github" : "DriesSchaumont", - "orcid" : "0000-0002-4389-0440", - "linkedin" : "dries-schaumont" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Emma Rousseau", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "emmarousseau", - "linkedin" : "emmarousseau1" - } - } - }, - { - "name" : "Jakub Majercik", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "jakub@data-intuitive.com", - "github" : "jakubmajercik", - "linkedin" : "jakubmajercik" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Bioinformatics Engineer" - } - ] - } - }, - { - "name" : "Kai Waldrant", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "KaiWaldrant", - "orcid" : "0009-0003-8555-1361", - "linkedin" : "kaiwaldrant" - } - } - }, - { - "name" : "Leïla Paquay", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "Leila011", - "linkedin" : "leilapaquay" - } - } - }, - { - "name" : "Sai Nirmayi Yasa", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "sainirmayi", - "linkedin" : "sai-nirmayi-yasa" - } - } - }, - { - "name" : "Theodoro Gasperin Terra Camargo", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "theodorogtc@gmail.com", - "github" : "tgaspe", - "linkedin" : "theodoro-gasperin-terra-camargo" - } - } - }, - { - "name" : "Toni Verbeiren", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "tverbeiren", - "linkedin" : "verbeiren" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist and CEO" - } - ] - } - }, - { - "name" : "Weiwei Schultz", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "linkedin" : "weiwei-schultz" - }, - "organizations" : [ - { - "name" : "Janssen R&D US", - "role" : "Associate Director Data Sciences" - } - ] - } - } - ], "keywords" : [ "bioinformatics", "modules", diff --git a/target/nextflow/umi_tools/umi_tools_dedup/.config.vsh.yaml b/target/nextflow/umi_tools/umi_tools_dedup/.config.vsh.yaml index b7013302..7cdae4e7 100644 --- a/target/nextflow/umi_tools/umi_tools_dedup/.config.vsh.yaml +++ b/target/nextflow/umi_tools/umi_tools_dedup/.config.vsh.yaml @@ -609,7 +609,7 @@ build_info: output: "target/nextflow/umi_tools/umi_tools_dedup" executable: "target/nextflow/umi_tools/umi_tools_dedup/main.nf" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -635,134 +635,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/nextflow/umi_tools/umi_tools_dedup/main.nf b/target/nextflow/umi_tools/umi_tools_dedup/main.nf index a2ef72f9..23a3ad40 100644 --- a/target/nextflow/umi_tools/umi_tools_dedup/main.nf +++ b/target/nextflow/umi_tools/umi_tools_dedup/main.nf @@ -3709,7 +3709,7 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/umi_tools/umi_tools_dedup", "viash_version" : "0.9.4", - "git_commit" : "736f18e9887893ca830612b48744fe312fe3c696", + "git_commit" : "666507c86de9150bfbdffdb2dbabc1dbde3c3262", "git_remote" : "https://github.com/viash-hub/biobox" }, "package_config" : { @@ -3726,220 +3726,6 @@ meta = [ ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", ".engines[.type == 'docker'].target_tag := 'v0.4.0'" ], - "authors" : [ - { - "name" : "Robrecht Cannoodt", - "roles" : [ - "author", - "maintainer" - ], - "info" : { - "links" : { - "email" : "robrecht@data-intuitive.com", - "github" : "rcannood", - "orcid" : "0000-0003-3641-729X", - "linkedin" : "robrechtcannoodt" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Science Engineer" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Angela Oliveira Pisco", - "roles" : [ - "author" - ], - "info" : { - "role" : "Contributor", - "links" : { - "github" : "aopisco", - "orcid" : "0000-0003-0142-2355", - "linkedin" : "aopisco" - }, - "organizations" : [ - { - "name" : "Insitro", - "href" : "https://insitro.com", - "role" : "Director of Computational Biology" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Dorien Roosen", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dorien@data-intuitive.com", - "github" : "dorien-er", - "linkedin" : "dorien-roosen" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Dries Schaumont", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dries@data-intuitive.com", - "github" : "DriesSchaumont", - "orcid" : "0000-0002-4389-0440", - "linkedin" : "dries-schaumont" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Emma Rousseau", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "emmarousseau", - "linkedin" : "emmarousseau1" - } - } - }, - { - "name" : "Jakub Majercik", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "jakub@data-intuitive.com", - "github" : "jakubmajercik", - "linkedin" : "jakubmajercik" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Bioinformatics Engineer" - } - ] - } - }, - { - "name" : "Kai Waldrant", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "KaiWaldrant", - "orcid" : "0009-0003-8555-1361", - "linkedin" : "kaiwaldrant" - } - } - }, - { - "name" : "Leïla Paquay", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "Leila011", - "linkedin" : "leilapaquay" - } - } - }, - { - "name" : "Sai Nirmayi Yasa", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "sainirmayi", - "linkedin" : "sai-nirmayi-yasa" - } - } - }, - { - "name" : "Theodoro Gasperin Terra Camargo", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "theodorogtc@gmail.com", - "github" : "tgaspe", - "linkedin" : "theodoro-gasperin-terra-camargo" - } - } - }, - { - "name" : "Toni Verbeiren", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "tverbeiren", - "linkedin" : "verbeiren" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist and CEO" - } - ] - } - }, - { - "name" : "Weiwei Schultz", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "linkedin" : "weiwei-schultz" - }, - "organizations" : [ - { - "name" : "Janssen R&D US", - "role" : "Associate Director Data Sciences" - } - ] - } - } - ], "keywords" : [ "bioinformatics", "modules", diff --git a/target/nextflow/umi_tools/umi_tools_extract/.config.vsh.yaml b/target/nextflow/umi_tools/umi_tools_extract/.config.vsh.yaml index 0fdf5a0f..9474e485 100644 --- a/target/nextflow/umi_tools/umi_tools_extract/.config.vsh.yaml +++ b/target/nextflow/umi_tools/umi_tools_extract/.config.vsh.yaml @@ -437,7 +437,7 @@ build_info: output: "target/nextflow/umi_tools/umi_tools_extract" executable: "target/nextflow/umi_tools/umi_tools_extract/main.nf" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -463,134 +463,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/nextflow/umi_tools/umi_tools_extract/main.nf b/target/nextflow/umi_tools/umi_tools_extract/main.nf index cfb2e2c0..8baef4ce 100644 --- a/target/nextflow/umi_tools/umi_tools_extract/main.nf +++ b/target/nextflow/umi_tools/umi_tools_extract/main.nf @@ -3529,7 +3529,7 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/umi_tools/umi_tools_extract", "viash_version" : "0.9.4", - "git_commit" : "736f18e9887893ca830612b48744fe312fe3c696", + "git_commit" : "666507c86de9150bfbdffdb2dbabc1dbde3c3262", "git_remote" : "https://github.com/viash-hub/biobox" }, "package_config" : { @@ -3546,220 +3546,6 @@ meta = [ ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", ".engines[.type == 'docker'].target_tag := 'v0.4.0'" ], - "authors" : [ - { - "name" : "Robrecht Cannoodt", - "roles" : [ - "author", - "maintainer" - ], - "info" : { - "links" : { - "email" : "robrecht@data-intuitive.com", - "github" : "rcannood", - "orcid" : "0000-0003-3641-729X", - "linkedin" : "robrechtcannoodt" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Science Engineer" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Angela Oliveira Pisco", - "roles" : [ - "author" - ], - "info" : { - "role" : "Contributor", - "links" : { - "github" : "aopisco", - "orcid" : "0000-0003-0142-2355", - "linkedin" : "aopisco" - }, - "organizations" : [ - { - "name" : "Insitro", - "href" : "https://insitro.com", - "role" : "Director of Computational Biology" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Dorien Roosen", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dorien@data-intuitive.com", - "github" : "dorien-er", - "linkedin" : "dorien-roosen" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Dries Schaumont", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dries@data-intuitive.com", - "github" : "DriesSchaumont", - "orcid" : "0000-0002-4389-0440", - "linkedin" : "dries-schaumont" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Emma Rousseau", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "emmarousseau", - "linkedin" : "emmarousseau1" - } - } - }, - { - "name" : "Jakub Majercik", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "jakub@data-intuitive.com", - "github" : "jakubmajercik", - "linkedin" : "jakubmajercik" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Bioinformatics Engineer" - } - ] - } - }, - { - "name" : "Kai Waldrant", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "KaiWaldrant", - "orcid" : "0009-0003-8555-1361", - "linkedin" : "kaiwaldrant" - } - } - }, - { - "name" : "Leïla Paquay", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "Leila011", - "linkedin" : "leilapaquay" - } - } - }, - { - "name" : "Sai Nirmayi Yasa", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "sainirmayi", - "linkedin" : "sai-nirmayi-yasa" - } - } - }, - { - "name" : "Theodoro Gasperin Terra Camargo", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "theodorogtc@gmail.com", - "github" : "tgaspe", - "linkedin" : "theodoro-gasperin-terra-camargo" - } - } - }, - { - "name" : "Toni Verbeiren", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "tverbeiren", - "linkedin" : "verbeiren" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist and CEO" - } - ] - } - }, - { - "name" : "Weiwei Schultz", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "linkedin" : "weiwei-schultz" - }, - "organizations" : [ - { - "name" : "Janssen R&D US", - "role" : "Associate Director Data Sciences" - } - ] - } - } - ], "keywords" : [ "bioinformatics", "modules", diff --git a/target/nextflow/umi_tools/umi_tools_prepareforrsem/.config.vsh.yaml b/target/nextflow/umi_tools/umi_tools_prepareforrsem/.config.vsh.yaml index 70abaee7..86f2c346 100644 --- a/target/nextflow/umi_tools/umi_tools_prepareforrsem/.config.vsh.yaml +++ b/target/nextflow/umi_tools/umi_tools_prepareforrsem/.config.vsh.yaml @@ -259,7 +259,7 @@ build_info: output: "target/nextflow/umi_tools/umi_tools_prepareforrsem" executable: "target/nextflow/umi_tools/umi_tools_prepareforrsem/main.nf" viash_version: "0.9.4" - git_commit: "736f18e9887893ca830612b48744fe312fe3c696" + git_commit: "666507c86de9150bfbdffdb2dbabc1dbde3c3262" git_remote: "https://github.com/viash-hub/biobox" package_config: name: "biobox" @@ -285,134 +285,6 @@ package_config: - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - ".engines[.type == 'docker'].target_tag := 'v0.4.0'" - authors: - - name: "Robrecht Cannoodt" - roles: - - "author" - - "maintainer" - info: - links: - email: "robrecht@data-intuitive.com" - github: "rcannood" - orcid: "0000-0003-3641-729X" - linkedin: "robrechtcannoodt" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Science Engineer" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Angela Oliveira Pisco" - roles: - - "author" - info: - role: "Contributor" - links: - github: "aopisco" - orcid: "0000-0003-0142-2355" - linkedin: "aopisco" - organizations: - - name: "Insitro" - href: "https://insitro.com" - role: "Director of Computational Biology" - - name: "Open Problems" - href: "https://openproblems.bio" - role: "Core Member" - - name: "Dorien Roosen" - roles: - - "author" - info: - links: - email: "dorien@data-intuitive.com" - github: "dorien-er" - linkedin: "dorien-roosen" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Dries Schaumont" - roles: - - "author" - info: - links: - email: "dries@data-intuitive.com" - github: "DriesSchaumont" - orcid: "0000-0002-4389-0440" - linkedin: "dries-schaumont" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist" - - name: "Emma Rousseau" - roles: - - "author" - info: - links: - github: "emmarousseau" - linkedin: "emmarousseau1" - - name: "Jakub Majercik" - roles: - - "author" - info: - links: - email: "jakub@data-intuitive.com" - github: "jakubmajercik" - linkedin: "jakubmajercik" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Bioinformatics Engineer" - - name: "Kai Waldrant" - roles: - - "author" - info: - links: - github: "KaiWaldrant" - orcid: "0009-0003-8555-1361" - linkedin: "kaiwaldrant" - - name: "Leïla Paquay" - roles: - - "author" - info: - links: - github: "Leila011" - linkedin: "leilapaquay" - - name: "Sai Nirmayi Yasa" - roles: - - "author" - info: - links: - github: "sainirmayi" - linkedin: "sai-nirmayi-yasa" - - name: "Theodoro Gasperin Terra Camargo" - roles: - - "author" - info: - links: - email: "theodorogtc@gmail.com" - github: "tgaspe" - linkedin: "theodoro-gasperin-terra-camargo" - - name: "Toni Verbeiren" - roles: - - "author" - info: - links: - github: "tverbeiren" - linkedin: "verbeiren" - organizations: - - name: "Data Intuitive" - href: "https://www.data-intuitive.com" - role: "Data Scientist and CEO" - - name: "Weiwei Schultz" - roles: - - "author" - info: - links: - linkedin: "weiwei-schultz" - organizations: - - name: "Janssen R&D US" - role: "Associate Director Data Sciences" keywords: - "bioinformatics" - "modules" diff --git a/target/nextflow/umi_tools/umi_tools_prepareforrsem/main.nf b/target/nextflow/umi_tools/umi_tools_prepareforrsem/main.nf index c3ceb80b..dc7dfc71 100644 --- a/target/nextflow/umi_tools/umi_tools_prepareforrsem/main.nf +++ b/target/nextflow/umi_tools/umi_tools_prepareforrsem/main.nf @@ -3351,7 +3351,7 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/umi_tools/umi_tools_prepareforrsem", "viash_version" : "0.9.4", - "git_commit" : "736f18e9887893ca830612b48744fe312fe3c696", + "git_commit" : "666507c86de9150bfbdffdb2dbabc1dbde3c3262", "git_remote" : "https://github.com/viash-hub/biobox" }, "package_config" : { @@ -3368,220 +3368,6 @@ meta = [ ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", ".engines[.type == 'docker'].target_tag := 'v0.4.0'" ], - "authors" : [ - { - "name" : "Robrecht Cannoodt", - "roles" : [ - "author", - "maintainer" - ], - "info" : { - "links" : { - "email" : "robrecht@data-intuitive.com", - "github" : "rcannood", - "orcid" : "0000-0003-3641-729X", - "linkedin" : "robrechtcannoodt" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Science Engineer" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Angela Oliveira Pisco", - "roles" : [ - "author" - ], - "info" : { - "role" : "Contributor", - "links" : { - "github" : "aopisco", - "orcid" : "0000-0003-0142-2355", - "linkedin" : "aopisco" - }, - "organizations" : [ - { - "name" : "Insitro", - "href" : "https://insitro.com", - "role" : "Director of Computational Biology" - }, - { - "name" : "Open Problems", - "href" : "https://openproblems.bio", - "role" : "Core Member" - } - ] - } - }, - { - "name" : "Dorien Roosen", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dorien@data-intuitive.com", - "github" : "dorien-er", - "linkedin" : "dorien-roosen" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Dries Schaumont", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "dries@data-intuitive.com", - "github" : "DriesSchaumont", - "orcid" : "0000-0002-4389-0440", - "linkedin" : "dries-schaumont" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist" - } - ] - } - }, - { - "name" : "Emma Rousseau", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "emmarousseau", - "linkedin" : "emmarousseau1" - } - } - }, - { - "name" : "Jakub Majercik", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "jakub@data-intuitive.com", - "github" : "jakubmajercik", - "linkedin" : "jakubmajercik" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Bioinformatics Engineer" - } - ] - } - }, - { - "name" : "Kai Waldrant", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "KaiWaldrant", - "orcid" : "0009-0003-8555-1361", - "linkedin" : "kaiwaldrant" - } - } - }, - { - "name" : "Leïla Paquay", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "Leila011", - "linkedin" : "leilapaquay" - } - } - }, - { - "name" : "Sai Nirmayi Yasa", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "sainirmayi", - "linkedin" : "sai-nirmayi-yasa" - } - } - }, - { - "name" : "Theodoro Gasperin Terra Camargo", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "email" : "theodorogtc@gmail.com", - "github" : "tgaspe", - "linkedin" : "theodoro-gasperin-terra-camargo" - } - } - }, - { - "name" : "Toni Verbeiren", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "github" : "tverbeiren", - "linkedin" : "verbeiren" - }, - "organizations" : [ - { - "name" : "Data Intuitive", - "href" : "https://www.data-intuitive.com", - "role" : "Data Scientist and CEO" - } - ] - } - }, - { - "name" : "Weiwei Schultz", - "roles" : [ - "author" - ], - "info" : { - "links" : { - "linkedin" : "weiwei-schultz" - }, - "organizations" : [ - { - "name" : "Janssen R&D US", - "role" : "Associate Director Data Sciences" - } - ] - } - } - ], "keywords" : [ "bioinformatics", "modules",