diff --git a/src/qualimap/qualimap_rnaseq/config.vsh.yaml b/src/qualimap/qualimap_rnaseq/config.vsh.yaml
index adb3a5a3..7988ae27 100644
--- a/src/qualimap/qualimap_rnaseq/config.vsh.yaml
+++ b/src/qualimap/qualimap_rnaseq/config.vsh.yaml
@@ -1,5 +1,4 @@
-name: qualimap_rnaseq
-namespace: qualimap
+name: "qualimap"
 keywords: [RNA-seq, quality control, QC Report]
 description: |
   Qualimap RNA-seq QC reports quality control metrics and bias estimations 
diff --git a/target/executable/agat/agat_convert_bed2gff/.config.vsh.yaml b/target/executable/agat/agat_convert_bed2gff/.config.vsh.yaml
index 82a3e79a..ed69faf9 100644
--- a/target/executable/agat/agat_convert_bed2gff/.config.vsh.yaml
+++ b/target/executable/agat/agat_convert_bed2gff/.config.vsh.yaml
@@ -235,7 +235,7 @@ build_info:
   output: "target/executable/agat/agat_convert_bed2gff"
   executable: "target/executable/agat/agat_convert_bed2gff/agat_convert_bed2gff"
   viash_version: "0.9.0-RC6"
-  git_commit: "1bbebbb5cb1e1abdefa478488aaa240909e54316"
+  git_commit: "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
   git_remote: "https://github.com/viash-hub/biobox"
 package_config:
   name: "biobox"
diff --git a/target/executable/agat/agat_convert_bed2gff/agat_convert_bed2gff b/target/executable/agat/agat_convert_bed2gff/agat_convert_bed2gff
index 494e526d..5ff35fb9 100755
--- a/target/executable/agat/agat_convert_bed2gff/agat_convert_bed2gff
+++ b/target/executable/agat/agat_convert_bed2gff/agat_convert_bed2gff
@@ -514,9 +514,9 @@ RUN agat --version | sed 's/AGAT\s\(.*\)/agat: "\1"/' > /var/software_versions.t
 
 LABEL org.opencontainers.image.authors="Leïla Paquay"
 LABEL org.opencontainers.image.description="Companion container for running component agat agat_convert_bed2gff"
-LABEL org.opencontainers.image.created="2024-08-20T21:05:37Z"
+LABEL org.opencontainers.image.created="2024-08-20T21:05:02Z"
 LABEL org.opencontainers.image.source="https://github.com/NBISweden/AGAT"
-LABEL org.opencontainers.image.revision="1bbebbb5cb1e1abdefa478488aaa240909e54316"
+LABEL org.opencontainers.image.revision="d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
 LABEL org.opencontainers.image.version="qualimap"
 
 VIASHDOCKER
diff --git a/target/executable/agat/agat_convert_embl2gff/.config.vsh.yaml b/target/executable/agat/agat_convert_embl2gff/.config.vsh.yaml
index d3dd019e..dfb70eb1 100644
--- a/target/executable/agat/agat_convert_embl2gff/.config.vsh.yaml
+++ b/target/executable/agat/agat_convert_embl2gff/.config.vsh.yaml
@@ -225,7 +225,7 @@ build_info:
   output: "target/executable/agat/agat_convert_embl2gff"
   executable: "target/executable/agat/agat_convert_embl2gff/agat_convert_embl2gff"
   viash_version: "0.9.0-RC6"
-  git_commit: "1bbebbb5cb1e1abdefa478488aaa240909e54316"
+  git_commit: "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
   git_remote: "https://github.com/viash-hub/biobox"
 package_config:
   name: "biobox"
diff --git a/target/executable/agat/agat_convert_embl2gff/agat_convert_embl2gff b/target/executable/agat/agat_convert_embl2gff/agat_convert_embl2gff
index 296fc044..5274c8f7 100755
--- a/target/executable/agat/agat_convert_embl2gff/agat_convert_embl2gff
+++ b/target/executable/agat/agat_convert_embl2gff/agat_convert_embl2gff
@@ -504,9 +504,9 @@ RUN agat --version | sed 's/AGAT\s\(.*\)/agat: "\1"/' > /var/software_versions.t
 
 LABEL org.opencontainers.image.authors="Leïla Paquay"
 LABEL org.opencontainers.image.description="Companion container for running component agat agat_convert_embl2gff"
-LABEL org.opencontainers.image.created="2024-08-20T21:05:37Z"
+LABEL org.opencontainers.image.created="2024-08-20T21:05:01Z"
 LABEL org.opencontainers.image.source="https://github.com/NBISweden/AGAT"
-LABEL org.opencontainers.image.revision="1bbebbb5cb1e1abdefa478488aaa240909e54316"
+LABEL org.opencontainers.image.revision="d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
 LABEL org.opencontainers.image.version="qualimap"
 
 VIASHDOCKER
diff --git a/target/executable/agat/agat_convert_sp_gff2gtf/.config.vsh.yaml b/target/executable/agat/agat_convert_sp_gff2gtf/.config.vsh.yaml
index 0e18331a..f55ef9be 100644
--- a/target/executable/agat/agat_convert_sp_gff2gtf/.config.vsh.yaml
+++ b/target/executable/agat/agat_convert_sp_gff2gtf/.config.vsh.yaml
@@ -228,7 +228,7 @@ build_info:
   output: "target/executable/agat/agat_convert_sp_gff2gtf"
   executable: "target/executable/agat/agat_convert_sp_gff2gtf/agat_convert_sp_gff2gtf"
   viash_version: "0.9.0-RC6"
-  git_commit: "1bbebbb5cb1e1abdefa478488aaa240909e54316"
+  git_commit: "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
   git_remote: "https://github.com/viash-hub/biobox"
 package_config:
   name: "biobox"
diff --git a/target/executable/agat/agat_convert_sp_gff2gtf/agat_convert_sp_gff2gtf b/target/executable/agat/agat_convert_sp_gff2gtf/agat_convert_sp_gff2gtf
index 15d198e3..8c5f2744 100755
--- a/target/executable/agat/agat_convert_sp_gff2gtf/agat_convert_sp_gff2gtf
+++ b/target/executable/agat/agat_convert_sp_gff2gtf/agat_convert_sp_gff2gtf
@@ -518,9 +518,9 @@ RUN agat --version | sed 's/AGAT\s\(.*\)/agat: "\1"/' > /var/software_versions.t
 
 LABEL org.opencontainers.image.authors="Leïla Paquay"
 LABEL org.opencontainers.image.description="Companion container for running component agat agat_convert_sp_gff2gtf"
-LABEL org.opencontainers.image.created="2024-08-20T21:05:37Z"
+LABEL org.opencontainers.image.created="2024-08-20T21:05:02Z"
 LABEL org.opencontainers.image.source="https://github.com/NBISweden/AGAT"
-LABEL org.opencontainers.image.revision="1bbebbb5cb1e1abdefa478488aaa240909e54316"
+LABEL org.opencontainers.image.revision="d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
 LABEL org.opencontainers.image.version="qualimap"
 
 VIASHDOCKER
diff --git a/target/executable/agat/agat_convert_sp_gff2tsv/.config.vsh.yaml b/target/executable/agat/agat_convert_sp_gff2tsv/.config.vsh.yaml
index 1ff216b1..044931a1 100644
--- a/target/executable/agat/agat_convert_sp_gff2tsv/.config.vsh.yaml
+++ b/target/executable/agat/agat_convert_sp_gff2tsv/.config.vsh.yaml
@@ -188,7 +188,7 @@ build_info:
   output: "target/executable/agat/agat_convert_sp_gff2tsv"
   executable: "target/executable/agat/agat_convert_sp_gff2tsv/agat_convert_sp_gff2tsv"
   viash_version: "0.9.0-RC6"
-  git_commit: "1bbebbb5cb1e1abdefa478488aaa240909e54316"
+  git_commit: "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
   git_remote: "https://github.com/viash-hub/biobox"
 package_config:
   name: "biobox"
diff --git a/target/executable/agat/agat_convert_sp_gff2tsv/agat_convert_sp_gff2tsv b/target/executable/agat/agat_convert_sp_gff2tsv/agat_convert_sp_gff2tsv
index ce268643..5fa528ad 100755
--- a/target/executable/agat/agat_convert_sp_gff2tsv/agat_convert_sp_gff2tsv
+++ b/target/executable/agat/agat_convert_sp_gff2tsv/agat_convert_sp_gff2tsv
@@ -483,9 +483,9 @@ RUN agat --version | sed 's/AGAT\s\(.*\)/agat: "\1"/' > /var/software_versions.t
 
 LABEL org.opencontainers.image.authors="Leïla Paquay"
 LABEL org.opencontainers.image.description="Companion container for running component agat agat_convert_sp_gff2tsv"
-LABEL org.opencontainers.image.created="2024-08-20T21:05:37Z"
+LABEL org.opencontainers.image.created="2024-08-20T21:05:01Z"
 LABEL org.opencontainers.image.source="https://github.com/NBISweden/AGAT"
-LABEL org.opencontainers.image.revision="1bbebbb5cb1e1abdefa478488aaa240909e54316"
+LABEL org.opencontainers.image.revision="d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
 LABEL org.opencontainers.image.version="qualimap"
 
 VIASHDOCKER
diff --git a/target/executable/agat/agat_convert_sp_gxf2gxf/.config.vsh.yaml b/target/executable/agat/agat_convert_sp_gxf2gxf/.config.vsh.yaml
index f1d9ff34..6a79153b 100644
--- a/target/executable/agat/agat_convert_sp_gxf2gxf/.config.vsh.yaml
+++ b/target/executable/agat/agat_convert_sp_gxf2gxf/.config.vsh.yaml
@@ -195,7 +195,7 @@ build_info:
   output: "target/executable/agat/agat_convert_sp_gxf2gxf"
   executable: "target/executable/agat/agat_convert_sp_gxf2gxf/agat_convert_sp_gxf2gxf"
   viash_version: "0.9.0-RC6"
-  git_commit: "1bbebbb5cb1e1abdefa478488aaa240909e54316"
+  git_commit: "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
   git_remote: "https://github.com/viash-hub/biobox"
 package_config:
   name: "biobox"
diff --git a/target/executable/agat/agat_convert_sp_gxf2gxf/agat_convert_sp_gxf2gxf b/target/executable/agat/agat_convert_sp_gxf2gxf/agat_convert_sp_gxf2gxf
index dad8e024..8f012352 100755
--- a/target/executable/agat/agat_convert_sp_gxf2gxf/agat_convert_sp_gxf2gxf
+++ b/target/executable/agat/agat_convert_sp_gxf2gxf/agat_convert_sp_gxf2gxf
@@ -492,9 +492,9 @@ RUN agat --version | sed 's/AGAT\s\(.*\)/agat: "\1"/' > /var/software_versions.t
 
 LABEL org.opencontainers.image.authors="Leïla Paquay"
 LABEL org.opencontainers.image.description="Companion container for running component agat agat_convert_sp_gxf2gxf"
-LABEL org.opencontainers.image.created="2024-08-20T21:05:36Z"
+LABEL org.opencontainers.image.created="2024-08-20T21:05:01Z"
 LABEL org.opencontainers.image.source="https://github.com/NBISweden/AGAT"
-LABEL org.opencontainers.image.revision="1bbebbb5cb1e1abdefa478488aaa240909e54316"
+LABEL org.opencontainers.image.revision="d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
 LABEL org.opencontainers.image.version="qualimap"
 
 VIASHDOCKER
diff --git a/target/executable/arriba/.config.vsh.yaml b/target/executable/arriba/.config.vsh.yaml
index 886dad6d..cfd5fdfb 100644
--- a/target/executable/arriba/.config.vsh.yaml
+++ b/target/executable/arriba/.config.vsh.yaml
@@ -706,7 +706,7 @@ build_info:
   output: "target/executable/arriba"
   executable: "target/executable/arriba/arriba"
   viash_version: "0.9.0-RC6"
-  git_commit: "1bbebbb5cb1e1abdefa478488aaa240909e54316"
+  git_commit: "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
   git_remote: "https://github.com/viash-hub/biobox"
 package_config:
   name: "biobox"
diff --git a/target/executable/arriba/arriba b/target/executable/arriba/arriba
index 8eee7976..fb519183 100755
--- a/target/executable/arriba/arriba
+++ b/target/executable/arriba/arriba
@@ -753,9 +753,9 @@ RUN arriba -h | grep 'Version:' 2>&1 |  sed 's/Version:\s\(.*\)/arriba: "\1"/' >
 
 LABEL org.opencontainers.image.authors="Robrecht Cannoodt"
 LABEL org.opencontainers.image.description="Companion container for running component arriba"
-LABEL org.opencontainers.image.created="2024-08-20T21:05:39Z"
+LABEL org.opencontainers.image.created="2024-08-20T21:05:03Z"
 LABEL org.opencontainers.image.source="https://github.com/suhrig/arriba"
-LABEL org.opencontainers.image.revision="1bbebbb5cb1e1abdefa478488aaa240909e54316"
+LABEL org.opencontainers.image.revision="d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
 LABEL org.opencontainers.image.version="qualimap"
 
 VIASHDOCKER
diff --git a/target/executable/bcl_convert/.config.vsh.yaml b/target/executable/bcl_convert/.config.vsh.yaml
index 54548a65..19887fe5 100644
--- a/target/executable/bcl_convert/.config.vsh.yaml
+++ b/target/executable/bcl_convert/.config.vsh.yaml
@@ -418,7 +418,7 @@ build_info:
   output: "target/executable/bcl_convert"
   executable: "target/executable/bcl_convert/bcl_convert"
   viash_version: "0.9.0-RC6"
-  git_commit: "1bbebbb5cb1e1abdefa478488aaa240909e54316"
+  git_commit: "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
   git_remote: "https://github.com/viash-hub/biobox"
 package_config:
   name: "biobox"
diff --git a/target/executable/bcl_convert/bcl_convert b/target/executable/bcl_convert/bcl_convert
index ddf070fa..000d5a57 100755
--- a/target/executable/bcl_convert/bcl_convert
+++ b/target/executable/bcl_convert/bcl_convert
@@ -598,9 +598,9 @@ RUN echo "bcl-convert: \"$(bcl-convert -V 2>&1 >/dev/null | sed -n '/Version/ s/
 
 LABEL org.opencontainers.image.authors="Toni Verbeiren, Dorien Roosen"
 LABEL org.opencontainers.image.description="Companion container for running component bcl_convert"
-LABEL org.opencontainers.image.created="2024-08-20T21:05:38Z"
+LABEL org.opencontainers.image.created="2024-08-20T21:05:03Z"
 LABEL org.opencontainers.image.source="https://github.com/viash-hub/biobox"
-LABEL org.opencontainers.image.revision="1bbebbb5cb1e1abdefa478488aaa240909e54316"
+LABEL org.opencontainers.image.revision="d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
 LABEL org.opencontainers.image.version="qualimap"
 
 VIASHDOCKER
diff --git a/target/executable/bd_rhapsody/bd_rhapsody_make_reference/.config.vsh.yaml b/target/executable/bd_rhapsody/bd_rhapsody_make_reference/.config.vsh.yaml
index e4edf7a1..93fb7239 100644
--- a/target/executable/bd_rhapsody/bd_rhapsody_make_reference/.config.vsh.yaml
+++ b/target/executable/bd_rhapsody/bd_rhapsody_make_reference/.config.vsh.yaml
@@ -270,7 +270,7 @@ build_info:
   output: "target/executable/bd_rhapsody/bd_rhapsody_make_reference"
   executable: "target/executable/bd_rhapsody/bd_rhapsody_make_reference/bd_rhapsody_make_reference"
   viash_version: "0.9.0-RC6"
-  git_commit: "1bbebbb5cb1e1abdefa478488aaa240909e54316"
+  git_commit: "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
   git_remote: "https://github.com/viash-hub/biobox"
 package_config:
   name: "biobox"
diff --git a/target/executable/bd_rhapsody/bd_rhapsody_make_reference/bd_rhapsody_make_reference b/target/executable/bd_rhapsody/bd_rhapsody_make_reference/bd_rhapsody_make_reference
index 54ed6c37..5058de07 100755
--- a/target/executable/bd_rhapsody/bd_rhapsody_make_reference/bd_rhapsody_make_reference
+++ b/target/executable/bd_rhapsody/bd_rhapsody_make_reference/bd_rhapsody_make_reference
@@ -548,9 +548,9 @@ RUN echo "bdgenomics/rhapsody: 2.2.1" > /var/software_versions.txt
 
 LABEL org.opencontainers.image.authors="Robrecht Cannoodt, Weiwei Schultz"
 LABEL org.opencontainers.image.description="Companion container for running component bd_rhapsody bd_rhapsody_make_reference"
-LABEL org.opencontainers.image.created="2024-08-20T21:05:41Z"
+LABEL org.opencontainers.image.created="2024-08-20T21:05:07Z"
 LABEL org.opencontainers.image.source="https://bitbucket.org/CRSwDev/cwl/src/master/v2.2.1/Extra_Utilities/"
-LABEL org.opencontainers.image.revision="1bbebbb5cb1e1abdefa478488aaa240909e54316"
+LABEL org.opencontainers.image.revision="d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
 LABEL org.opencontainers.image.version="qualimap"
 
 VIASHDOCKER
diff --git a/target/executable/bedtools/bedtools_bamtofastq/.config.vsh.yaml b/target/executable/bedtools/bedtools_bamtofastq/.config.vsh.yaml
index 8fe8a523..96271e26 100644
--- a/target/executable/bedtools/bedtools_bamtofastq/.config.vsh.yaml
+++ b/target/executable/bedtools/bedtools_bamtofastq/.config.vsh.yaml
@@ -187,7 +187,7 @@ build_info:
   output: "target/executable/bedtools/bedtools_bamtofastq"
   executable: "target/executable/bedtools/bedtools_bamtofastq/bedtools_bamtofastq"
   viash_version: "0.9.0-RC6"
-  git_commit: "1bbebbb5cb1e1abdefa478488aaa240909e54316"
+  git_commit: "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
   git_remote: "https://github.com/viash-hub/biobox"
 package_config:
   name: "biobox"
diff --git a/target/executable/bedtools/bedtools_bamtofastq/bedtools_bamtofastq b/target/executable/bedtools/bedtools_bamtofastq/bedtools_bamtofastq
index ea3c17e4..891015ac 100755
--- a/target/executable/bedtools/bedtools_bamtofastq/bedtools_bamtofastq
+++ b/target/executable/bedtools/bedtools_bamtofastq/bedtools_bamtofastq
@@ -482,9 +482,9 @@ RUN echo "bedtools: \"$(bedtools --version | sed -n 's/^bedtools //p')\"" > /var
 
 LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo"
 LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_bamtofastq"
-LABEL org.opencontainers.image.created="2024-08-20T21:05:27Z"
+LABEL org.opencontainers.image.created="2024-08-20T21:04:51Z"
 LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2"
-LABEL org.opencontainers.image.revision="1bbebbb5cb1e1abdefa478488aaa240909e54316"
+LABEL org.opencontainers.image.revision="d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
 LABEL org.opencontainers.image.version="qualimap"
 
 VIASHDOCKER
diff --git a/target/executable/bedtools/bedtools_bedtobam/.config.vsh.yaml b/target/executable/bedtools/bedtools_bedtobam/.config.vsh.yaml
index 837fecca..3c259cd4 100644
--- a/target/executable/bedtools/bedtools_bedtobam/.config.vsh.yaml
+++ b/target/executable/bedtools/bedtools_bedtobam/.config.vsh.yaml
@@ -214,7 +214,7 @@ build_info:
   output: "target/executable/bedtools/bedtools_bedtobam"
   executable: "target/executable/bedtools/bedtools_bedtobam/bedtools_bedtobam"
   viash_version: "0.9.0-RC6"
-  git_commit: "1bbebbb5cb1e1abdefa478488aaa240909e54316"
+  git_commit: "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
   git_remote: "https://github.com/viash-hub/biobox"
 package_config:
   name: "biobox"
diff --git a/target/executable/bedtools/bedtools_bedtobam/bedtools_bedtobam b/target/executable/bedtools/bedtools_bedtobam/bedtools_bedtobam
index 03b4bcb3..e6be00bd 100755
--- a/target/executable/bedtools/bedtools_bedtobam/bedtools_bedtobam
+++ b/target/executable/bedtools/bedtools_bedtobam/bedtools_bedtobam
@@ -495,9 +495,9 @@ RUN echo "bedtools: \"$(bedtools --version | sed -n 's/^bedtools //p')\"" > /var
 
 LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo"
 LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_bedtobam"
-LABEL org.opencontainers.image.created="2024-08-20T21:05:27Z"
+LABEL org.opencontainers.image.created="2024-08-20T21:04:52Z"
 LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2"
-LABEL org.opencontainers.image.revision="1bbebbb5cb1e1abdefa478488aaa240909e54316"
+LABEL org.opencontainers.image.revision="d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
 LABEL org.opencontainers.image.version="qualimap"
 
 VIASHDOCKER
diff --git a/target/executable/bedtools/bedtools_getfasta/.config.vsh.yaml b/target/executable/bedtools/bedtools_getfasta/.config.vsh.yaml
index f97ca9aa..dc45156e 100644
--- a/target/executable/bedtools/bedtools_getfasta/.config.vsh.yaml
+++ b/target/executable/bedtools/bedtools_getfasta/.config.vsh.yaml
@@ -232,7 +232,7 @@ build_info:
   output: "target/executable/bedtools/bedtools_getfasta"
   executable: "target/executable/bedtools/bedtools_getfasta/bedtools_getfasta"
   viash_version: "0.9.0-RC6"
-  git_commit: "1bbebbb5cb1e1abdefa478488aaa240909e54316"
+  git_commit: "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
   git_remote: "https://github.com/viash-hub/biobox"
 package_config:
   name: "biobox"
diff --git a/target/executable/bedtools/bedtools_getfasta/bedtools_getfasta b/target/executable/bedtools/bedtools_getfasta/bedtools_getfasta
index 687e3070..cd3b584c 100755
--- a/target/executable/bedtools/bedtools_getfasta/bedtools_getfasta
+++ b/target/executable/bedtools/bedtools_getfasta/bedtools_getfasta
@@ -525,9 +525,9 @@ RUN echo "bedtools: \"$(bedtools --version | sed -n 's/^bedtools //p')\"" > /var
 
 LABEL org.opencontainers.image.authors="Dries Schaumont"
 LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_getfasta"
-LABEL org.opencontainers.image.created="2024-08-20T21:05:26Z"
+LABEL org.opencontainers.image.created="2024-08-20T21:04:51Z"
 LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2"
-LABEL org.opencontainers.image.revision="1bbebbb5cb1e1abdefa478488aaa240909e54316"
+LABEL org.opencontainers.image.revision="d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
 LABEL org.opencontainers.image.version="qualimap"
 
 VIASHDOCKER
diff --git a/target/executable/bedtools/bedtools_intersect/.config.vsh.yaml b/target/executable/bedtools/bedtools_intersect/.config.vsh.yaml
index 36b1e2bf..ce8a0c3d 100644
--- a/target/executable/bedtools/bedtools_intersect/.config.vsh.yaml
+++ b/target/executable/bedtools/bedtools_intersect/.config.vsh.yaml
@@ -410,7 +410,7 @@ build_info:
   output: "target/executable/bedtools/bedtools_intersect"
   executable: "target/executable/bedtools/bedtools_intersect/bedtools_intersect"
   viash_version: "0.9.0-RC6"
-  git_commit: "1bbebbb5cb1e1abdefa478488aaa240909e54316"
+  git_commit: "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
   git_remote: "https://github.com/viash-hub/biobox"
 package_config:
   name: "biobox"
diff --git a/target/executable/bedtools/bedtools_intersect/bedtools_intersect b/target/executable/bedtools/bedtools_intersect/bedtools_intersect
index 6b9763e5..3dda0002 100755
--- a/target/executable/bedtools/bedtools_intersect/bedtools_intersect
+++ b/target/executable/bedtools/bedtools_intersect/bedtools_intersect
@@ -632,9 +632,9 @@ RUN echo "bedtools: \"$(bedtools --version | sed -n 's/^bedtools //p')\"" > /var
 
 LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo"
 LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_intersect"
-LABEL org.opencontainers.image.created="2024-08-20T21:05:26Z"
+LABEL org.opencontainers.image.created="2024-08-20T21:04:51Z"
 LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2"
-LABEL org.opencontainers.image.revision="1bbebbb5cb1e1abdefa478488aaa240909e54316"
+LABEL org.opencontainers.image.revision="d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
 LABEL org.opencontainers.image.version="qualimap"
 
 VIASHDOCKER
diff --git a/target/executable/bedtools/bedtools_sort/.config.vsh.yaml b/target/executable/bedtools/bedtools_sort/.config.vsh.yaml
index dcfc9f77..d5e8e238 100644
--- a/target/executable/bedtools/bedtools_sort/.config.vsh.yaml
+++ b/target/executable/bedtools/bedtools_sort/.config.vsh.yaml
@@ -222,7 +222,7 @@ build_info:
   output: "target/executable/bedtools/bedtools_sort"
   executable: "target/executable/bedtools/bedtools_sort/bedtools_sort"
   viash_version: "0.9.0-RC6"
-  git_commit: "1bbebbb5cb1e1abdefa478488aaa240909e54316"
+  git_commit: "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
   git_remote: "https://github.com/viash-hub/biobox"
 package_config:
   name: "biobox"
diff --git a/target/executable/bedtools/bedtools_sort/bedtools_sort b/target/executable/bedtools/bedtools_sort/bedtools_sort
index fda4cf38..66d87f5b 100755
--- a/target/executable/bedtools/bedtools_sort/bedtools_sort
+++ b/target/executable/bedtools/bedtools_sort/bedtools_sort
@@ -508,9 +508,9 @@ RUN echo "bedtools: \"$(bedtools --version | sed -n 's/^bedtools //p')\"" > /var
 
 LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo"
 LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_sort"
-LABEL org.opencontainers.image.created="2024-08-20T21:05:27Z"
+LABEL org.opencontainers.image.created="2024-08-20T21:04:52Z"
 LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2"
-LABEL org.opencontainers.image.revision="1bbebbb5cb1e1abdefa478488aaa240909e54316"
+LABEL org.opencontainers.image.revision="d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
 LABEL org.opencontainers.image.version="qualimap"
 
 VIASHDOCKER
diff --git a/target/executable/busco/busco_download_datasets/.config.vsh.yaml b/target/executable/busco/busco_download_datasets/.config.vsh.yaml
index 33737e65..7bfd3ea3 100644
--- a/target/executable/busco/busco_download_datasets/.config.vsh.yaml
+++ b/target/executable/busco/busco_download_datasets/.config.vsh.yaml
@@ -158,7 +158,7 @@ build_info:
   output: "target/executable/busco/busco_download_datasets"
   executable: "target/executable/busco/busco_download_datasets/busco_download_datasets"
   viash_version: "0.9.0-RC6"
-  git_commit: "1bbebbb5cb1e1abdefa478488aaa240909e54316"
+  git_commit: "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
   git_remote: "https://github.com/viash-hub/biobox"
 package_config:
   name: "biobox"
diff --git a/target/executable/busco/busco_download_datasets/busco_download_datasets b/target/executable/busco/busco_download_datasets/busco_download_datasets
index 7bf88781..b723f968 100755
--- a/target/executable/busco/busco_download_datasets/busco_download_datasets
+++ b/target/executable/busco/busco_download_datasets/busco_download_datasets
@@ -474,9 +474,9 @@ RUN busco --version | sed 's/BUSCO\s\(.*\)/busco: "\1"/' > /var/software_version
 
 LABEL org.opencontainers.image.authors="Dorien Roosen"
 LABEL org.opencontainers.image.description="Companion container for running component busco busco_download_datasets"
-LABEL org.opencontainers.image.created="2024-08-20T21:05:35Z"
+LABEL org.opencontainers.image.created="2024-08-20T21:05:00Z"
 LABEL org.opencontainers.image.source="https://gitlab.com/ezlab/busco"
-LABEL org.opencontainers.image.revision="1bbebbb5cb1e1abdefa478488aaa240909e54316"
+LABEL org.opencontainers.image.revision="d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
 LABEL org.opencontainers.image.version="qualimap"
 
 VIASHDOCKER
diff --git a/target/executable/busco/busco_list_datasets/.config.vsh.yaml b/target/executable/busco/busco_list_datasets/.config.vsh.yaml
index 3a20050c..82103a46 100644
--- a/target/executable/busco/busco_list_datasets/.config.vsh.yaml
+++ b/target/executable/busco/busco_list_datasets/.config.vsh.yaml
@@ -145,7 +145,7 @@ build_info:
   output: "target/executable/busco/busco_list_datasets"
   executable: "target/executable/busco/busco_list_datasets/busco_list_datasets"
   viash_version: "0.9.0-RC6"
-  git_commit: "1bbebbb5cb1e1abdefa478488aaa240909e54316"
+  git_commit: "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
   git_remote: "https://github.com/viash-hub/biobox"
 package_config:
   name: "biobox"
diff --git a/target/executable/busco/busco_list_datasets/busco_list_datasets b/target/executable/busco/busco_list_datasets/busco_list_datasets
index e7ebb1f8..a9341137 100755
--- a/target/executable/busco/busco_list_datasets/busco_list_datasets
+++ b/target/executable/busco/busco_list_datasets/busco_list_datasets
@@ -464,9 +464,9 @@ RUN busco --version | sed 's/BUSCO\s\(.*\)/busco: "\1"/' > /var/software_version
 
 LABEL org.opencontainers.image.authors="Dorien Roosen"
 LABEL org.opencontainers.image.description="Companion container for running component busco busco_list_datasets"
-LABEL org.opencontainers.image.created="2024-08-20T21:05:36Z"
+LABEL org.opencontainers.image.created="2024-08-20T21:05:00Z"
 LABEL org.opencontainers.image.source="https://gitlab.com/ezlab/busco"
-LABEL org.opencontainers.image.revision="1bbebbb5cb1e1abdefa478488aaa240909e54316"
+LABEL org.opencontainers.image.revision="d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
 LABEL org.opencontainers.image.version="qualimap"
 
 VIASHDOCKER
diff --git a/target/executable/busco/busco_run/.config.vsh.yaml b/target/executable/busco/busco_run/.config.vsh.yaml
index 8dd7bfd0..c3fd7140 100644
--- a/target/executable/busco/busco_run/.config.vsh.yaml
+++ b/target/executable/busco/busco_run/.config.vsh.yaml
@@ -423,7 +423,7 @@ build_info:
   output: "target/executable/busco/busco_run"
   executable: "target/executable/busco/busco_run/busco_run"
   viash_version: "0.9.0-RC6"
-  git_commit: "1bbebbb5cb1e1abdefa478488aaa240909e54316"
+  git_commit: "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
   git_remote: "https://github.com/viash-hub/biobox"
 package_config:
   name: "biobox"
diff --git a/target/executable/busco/busco_run/busco_run b/target/executable/busco/busco_run/busco_run
index 223142c5..fcb7a0e3 100755
--- a/target/executable/busco/busco_run/busco_run
+++ b/target/executable/busco/busco_run/busco_run
@@ -631,9 +631,9 @@ RUN busco --version | sed 's/BUSCO\s\(.*\)/busco: "\1"/' > /var/software_version
 
 LABEL org.opencontainers.image.authors="Dorien Roosen"
 LABEL org.opencontainers.image.description="Companion container for running component busco busco_run"
-LABEL org.opencontainers.image.created="2024-08-20T21:05:36Z"
+LABEL org.opencontainers.image.created="2024-08-20T21:05:00Z"
 LABEL org.opencontainers.image.source="https://gitlab.com/ezlab/busco"
-LABEL org.opencontainers.image.revision="1bbebbb5cb1e1abdefa478488aaa240909e54316"
+LABEL org.opencontainers.image.revision="d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
 LABEL org.opencontainers.image.version="qualimap"
 
 VIASHDOCKER
diff --git a/target/executable/cutadapt/.config.vsh.yaml b/target/executable/cutadapt/.config.vsh.yaml
index 3ec3b2d5..e4915197 100644
--- a/target/executable/cutadapt/.config.vsh.yaml
+++ b/target/executable/cutadapt/.config.vsh.yaml
@@ -740,7 +740,7 @@ build_info:
   output: "target/executable/cutadapt"
   executable: "target/executable/cutadapt/cutadapt"
   viash_version: "0.9.0-RC6"
-  git_commit: "1bbebbb5cb1e1abdefa478488aaa240909e54316"
+  git_commit: "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
   git_remote: "https://github.com/viash-hub/biobox"
 package_config:
   name: "biobox"
diff --git a/target/executable/cutadapt/cutadapt b/target/executable/cutadapt/cutadapt
index 601f611c..6999553e 100755
--- a/target/executable/cutadapt/cutadapt
+++ b/target/executable/cutadapt/cutadapt
@@ -830,9 +830,9 @@ RUN cutadapt --version | sed 's/\(.*\)/cutadapt: "\1"/' > /var/software_versions
 
 LABEL org.opencontainers.image.authors="Toni Verbeiren"
 LABEL org.opencontainers.image.description="Companion container for running component cutadapt"
-LABEL org.opencontainers.image.created="2024-08-20T21:05:40Z"
+LABEL org.opencontainers.image.created="2024-08-20T21:05:05Z"
 LABEL org.opencontainers.image.source="https://github.com/marcelm/cutadapt"
-LABEL org.opencontainers.image.revision="1bbebbb5cb1e1abdefa478488aaa240909e54316"
+LABEL org.opencontainers.image.revision="d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
 LABEL org.opencontainers.image.version="qualimap"
 
 VIASHDOCKER
diff --git a/target/executable/falco/.config.vsh.yaml b/target/executable/falco/.config.vsh.yaml
index aada455c..7315c0cd 100644
--- a/target/executable/falco/.config.vsh.yaml
+++ b/target/executable/falco/.config.vsh.yaml
@@ -317,7 +317,7 @@ build_info:
   output: "target/executable/falco"
   executable: "target/executable/falco/falco"
   viash_version: "0.9.0-RC6"
-  git_commit: "1bbebbb5cb1e1abdefa478488aaa240909e54316"
+  git_commit: "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
   git_remote: "https://github.com/viash-hub/biobox"
 package_config:
   name: "biobox"
diff --git a/target/executable/falco/falco b/target/executable/falco/falco
index a57d832b..be6289c1 100755
--- a/target/executable/falco/falco
+++ b/target/executable/falco/falco
@@ -588,9 +588,9 @@ RUN echo "falco: \"$(falco -v | sed -n 's/^falco //p')\"" > /var/software_versio
 
 LABEL org.opencontainers.image.authors="Toni Verbeiren"
 LABEL org.opencontainers.image.description="Companion container for running component falco"
-LABEL org.opencontainers.image.created="2024-08-20T21:05:41Z"
+LABEL org.opencontainers.image.created="2024-08-20T21:05:06Z"
 LABEL org.opencontainers.image.source="https://github.com/smithlabcode/falco"
-LABEL org.opencontainers.image.revision="1bbebbb5cb1e1abdefa478488aaa240909e54316"
+LABEL org.opencontainers.image.revision="d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
 LABEL org.opencontainers.image.version="qualimap"
 
 VIASHDOCKER
diff --git a/target/executable/fastp/.config.vsh.yaml b/target/executable/fastp/.config.vsh.yaml
index b0bd948c..6846d8d3 100644
--- a/target/executable/fastp/.config.vsh.yaml
+++ b/target/executable/fastp/.config.vsh.yaml
@@ -1083,7 +1083,7 @@ build_info:
   output: "target/executable/fastp"
   executable: "target/executable/fastp/fastp"
   viash_version: "0.9.0-RC6"
-  git_commit: "1bbebbb5cb1e1abdefa478488aaa240909e54316"
+  git_commit: "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
   git_remote: "https://github.com/viash-hub/biobox"
 package_config:
   name: "biobox"
diff --git a/target/executable/fastp/fastp b/target/executable/fastp/fastp
index 64843386..54d3f876 100755
--- a/target/executable/fastp/fastp
+++ b/target/executable/fastp/fastp
@@ -1027,9 +1027,9 @@ RUN fastp --version 2>&1 | sed 's# #: "#;s#$#"#' > /var/software_versions.txt
 
 LABEL org.opencontainers.image.authors="Robrecht Cannoodt"
 LABEL org.opencontainers.image.description="Companion container for running component fastp"
-LABEL org.opencontainers.image.created="2024-08-20T21:05:38Z"
+LABEL org.opencontainers.image.created="2024-08-20T21:05:02Z"
 LABEL org.opencontainers.image.source="https://github.com/OpenGene/fastp"
-LABEL org.opencontainers.image.revision="1bbebbb5cb1e1abdefa478488aaa240909e54316"
+LABEL org.opencontainers.image.revision="d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
 LABEL org.opencontainers.image.version="qualimap"
 
 VIASHDOCKER
diff --git a/target/executable/featurecounts/.config.vsh.yaml b/target/executable/featurecounts/.config.vsh.yaml
index f0ccbf00..f504e053 100644
--- a/target/executable/featurecounts/.config.vsh.yaml
+++ b/target/executable/featurecounts/.config.vsh.yaml
@@ -645,7 +645,7 @@ build_info:
   output: "target/executable/featurecounts"
   executable: "target/executable/featurecounts/featurecounts"
   viash_version: "0.9.0-RC6"
-  git_commit: "1bbebbb5cb1e1abdefa478488aaa240909e54316"
+  git_commit: "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
   git_remote: "https://github.com/viash-hub/biobox"
 package_config:
   name: "biobox"
diff --git a/target/executable/featurecounts/featurecounts b/target/executable/featurecounts/featurecounts
index 11b6e456..97c16547 100755
--- a/target/executable/featurecounts/featurecounts
+++ b/target/executable/featurecounts/featurecounts
@@ -753,9 +753,9 @@ RUN featureCounts -v 2>&1 | sed 's/featureCounts v\([0-9.]*\)/featureCounts: \1/
 
 LABEL org.opencontainers.image.authors="Sai Nirmayi Yasa"
 LABEL org.opencontainers.image.description="Companion container for running component featurecounts"
-LABEL org.opencontainers.image.created="2024-08-20T21:05:34Z"
+LABEL org.opencontainers.image.created="2024-08-20T21:04:58Z"
 LABEL org.opencontainers.image.source="https://github.com/ShiLab-Bioinformatics/subread"
-LABEL org.opencontainers.image.revision="1bbebbb5cb1e1abdefa478488aaa240909e54316"
+LABEL org.opencontainers.image.revision="d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
 LABEL org.opencontainers.image.version="qualimap"
 
 VIASHDOCKER
diff --git a/target/executable/gffread/.config.vsh.yaml b/target/executable/gffread/.config.vsh.yaml
index b82b8fce..1a0b51f5 100644
--- a/target/executable/gffread/.config.vsh.yaml
+++ b/target/executable/gffread/.config.vsh.yaml
@@ -685,7 +685,7 @@ build_info:
   output: "target/executable/gffread"
   executable: "target/executable/gffread/gffread"
   viash_version: "0.9.0-RC6"
-  git_commit: "1bbebbb5cb1e1abdefa478488aaa240909e54316"
+  git_commit: "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
   git_remote: "https://github.com/viash-hub/biobox"
 package_config:
   name: "biobox"
diff --git a/target/executable/gffread/gffread b/target/executable/gffread/gffread
index 96be4a47..a2ae3c15 100755
--- a/target/executable/gffread/gffread
+++ b/target/executable/gffread/gffread
@@ -806,9 +806,9 @@ RUN echo "gffread: \"$(gffread --version 2>&1)\"" > /var/software_versions.txt
 
 LABEL org.opencontainers.image.authors="Emma Rousseau"
 LABEL org.opencontainers.image.description="Companion container for running component gffread"
-LABEL org.opencontainers.image.created="2024-08-20T21:05:25Z"
+LABEL org.opencontainers.image.created="2024-08-20T21:04:50Z"
 LABEL org.opencontainers.image.source="https://github.com/gpertea/gffread"
-LABEL org.opencontainers.image.revision="1bbebbb5cb1e1abdefa478488aaa240909e54316"
+LABEL org.opencontainers.image.revision="d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
 LABEL org.opencontainers.image.version="qualimap"
 
 VIASHDOCKER
diff --git a/target/executable/lofreq/lofreq_call/.config.vsh.yaml b/target/executable/lofreq/lofreq_call/.config.vsh.yaml
index 29c0a98c..65870256 100644
--- a/target/executable/lofreq/lofreq_call/.config.vsh.yaml
+++ b/target/executable/lofreq/lofreq_call/.config.vsh.yaml
@@ -507,7 +507,7 @@ build_info:
   output: "target/executable/lofreq/lofreq_call"
   executable: "target/executable/lofreq/lofreq_call/lofreq_call"
   viash_version: "0.9.0-RC6"
-  git_commit: "1bbebbb5cb1e1abdefa478488aaa240909e54316"
+  git_commit: "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
   git_remote: "https://github.com/viash-hub/biobox"
 package_config:
   name: "biobox"
diff --git a/target/executable/lofreq/lofreq_call/lofreq_call b/target/executable/lofreq/lofreq_call/lofreq_call
index aefd97dd..9a5cb337 100755
--- a/target/executable/lofreq/lofreq_call/lofreq_call
+++ b/target/executable/lofreq/lofreq_call/lofreq_call
@@ -655,9 +655,9 @@ echo "lofreq: $version" > /var/software_versions.txt
 
 LABEL org.opencontainers.image.authors="Kai Waldrant"
 LABEL org.opencontainers.image.description="Companion container for running component lofreq lofreq_call"
-LABEL org.opencontainers.image.created="2024-08-20T21:05:33Z"
+LABEL org.opencontainers.image.created="2024-08-20T21:04:58Z"
 LABEL org.opencontainers.image.source="https://github.com/viash-hub/biobox"
-LABEL org.opencontainers.image.revision="1bbebbb5cb1e1abdefa478488aaa240909e54316"
+LABEL org.opencontainers.image.revision="d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
 LABEL org.opencontainers.image.version="qualimap"
 
 VIASHDOCKER
diff --git a/target/executable/lofreq/lofreq_indelqual/.config.vsh.yaml b/target/executable/lofreq/lofreq_indelqual/.config.vsh.yaml
index c0130764..c7b9da24 100644
--- a/target/executable/lofreq/lofreq_indelqual/.config.vsh.yaml
+++ b/target/executable/lofreq/lofreq_indelqual/.config.vsh.yaml
@@ -215,7 +215,7 @@ build_info:
   output: "target/executable/lofreq/lofreq_indelqual"
   executable: "target/executable/lofreq/lofreq_indelqual/lofreq_indelqual"
   viash_version: "0.9.0-RC6"
-  git_commit: "1bbebbb5cb1e1abdefa478488aaa240909e54316"
+  git_commit: "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
   git_remote: "https://github.com/viash-hub/biobox"
 package_config:
   name: "biobox"
diff --git a/target/executable/lofreq/lofreq_indelqual/lofreq_indelqual b/target/executable/lofreq/lofreq_indelqual/lofreq_indelqual
index 4084f870..cf5b3386 100755
--- a/target/executable/lofreq/lofreq_indelqual/lofreq_indelqual
+++ b/target/executable/lofreq/lofreq_indelqual/lofreq_indelqual
@@ -500,9 +500,9 @@ echo "lofreq: $version" > /var/software_versions.txt
 
 LABEL org.opencontainers.image.authors="Kai Waldrant"
 LABEL org.opencontainers.image.description="Companion container for running component lofreq lofreq_indelqual"
-LABEL org.opencontainers.image.created="2024-08-20T21:05:33Z"
+LABEL org.opencontainers.image.created="2024-08-20T21:04:57Z"
 LABEL org.opencontainers.image.source="https://github.com/viash-hub/biobox"
-LABEL org.opencontainers.image.revision="1bbebbb5cb1e1abdefa478488aaa240909e54316"
+LABEL org.opencontainers.image.revision="d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
 LABEL org.opencontainers.image.version="qualimap"
 
 VIASHDOCKER
diff --git a/target/executable/multiqc/.config.vsh.yaml b/target/executable/multiqc/.config.vsh.yaml
index e988a3fd..d86606ee 100644
--- a/target/executable/multiqc/.config.vsh.yaml
+++ b/target/executable/multiqc/.config.vsh.yaml
@@ -456,7 +456,7 @@ build_info:
   output: "target/executable/multiqc"
   executable: "target/executable/multiqc/multiqc"
   viash_version: "0.9.0-RC6"
-  git_commit: "1bbebbb5cb1e1abdefa478488aaa240909e54316"
+  git_commit: "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
   git_remote: "https://github.com/viash-hub/biobox"
 package_config:
   name: "biobox"
diff --git a/target/executable/multiqc/multiqc b/target/executable/multiqc/multiqc
index 8b5ef81d..d7b8ffdc 100755
--- a/target/executable/multiqc/multiqc
+++ b/target/executable/multiqc/multiqc
@@ -636,9 +636,9 @@ RUN multiqc --version | sed 's/multiqc, version\s\(.*\)/multiqc: "\1"/' > /var/s
 
 LABEL org.opencontainers.image.authors="Dorien Roosen"
 LABEL org.opencontainers.image.description="Companion container for running component multiqc"
-LABEL org.opencontainers.image.created="2024-08-20T21:05:41Z"
+LABEL org.opencontainers.image.created="2024-08-20T21:05:06Z"
 LABEL org.opencontainers.image.source="https://github.com/viash-hub/biobox"
-LABEL org.opencontainers.image.revision="1bbebbb5cb1e1abdefa478488aaa240909e54316"
+LABEL org.opencontainers.image.revision="d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
 LABEL org.opencontainers.image.version="qualimap"
 
 VIASHDOCKER
diff --git a/target/executable/pear/.config.vsh.yaml b/target/executable/pear/.config.vsh.yaml
index b96c9c06..9f1fefcb 100644
--- a/target/executable/pear/.config.vsh.yaml
+++ b/target/executable/pear/.config.vsh.yaml
@@ -398,7 +398,7 @@ build_info:
   output: "target/executable/pear"
   executable: "target/executable/pear/pear"
   viash_version: "0.9.0-RC6"
-  git_commit: "1bbebbb5cb1e1abdefa478488aaa240909e54316"
+  git_commit: "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
   git_remote: "https://github.com/viash-hub/biobox"
 package_config:
   name: "biobox"
diff --git a/target/executable/pear/pear b/target/executable/pear/pear
index 28b2465f..4f78ad99 100755
--- a/target/executable/pear/pear
+++ b/target/executable/pear/pear
@@ -596,9 +596,9 @@ echo "pear: $version" > /var/software_versions.txt
 
 LABEL org.opencontainers.image.authors="Kai Waldrant"
 LABEL org.opencontainers.image.description="Companion container for running component pear"
-LABEL org.opencontainers.image.created="2024-08-20T21:05:28Z"
+LABEL org.opencontainers.image.created="2024-08-20T21:04:52Z"
 LABEL org.opencontainers.image.source="https://github.com/tseemann/PEAR"
-LABEL org.opencontainers.image.revision="1bbebbb5cb1e1abdefa478488aaa240909e54316"
+LABEL org.opencontainers.image.revision="d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
 LABEL org.opencontainers.image.version="qualimap"
 
 VIASHDOCKER
diff --git a/target/executable/qualimap/qualimap_rnaseq/.config.vsh.yaml b/target/executable/qualimap/.config.vsh.yaml
similarity index 97%
rename from target/executable/qualimap/qualimap_rnaseq/.config.vsh.yaml
rename to target/executable/qualimap/.config.vsh.yaml
index b5718051..1ba49a7c 100644
--- a/target/executable/qualimap/qualimap_rnaseq/.config.vsh.yaml
+++ b/target/executable/qualimap/.config.vsh.yaml
@@ -1,5 +1,4 @@
-name: "qualimap_rnaseq"
-namespace: "qualimap"
+name: "qualimap"
 version: "qualimap"
 authors:
 - name: "Dorien Roosen"
@@ -279,10 +278,10 @@ build_info:
   config: "src/qualimap/qualimap_rnaseq/config.vsh.yaml"
   runner: "executable"
   engine: "docker|native"
-  output: "target/executable/qualimap/qualimap_rnaseq"
-  executable: "target/executable/qualimap/qualimap_rnaseq/qualimap_rnaseq"
+  output: "target/executable/qualimap"
+  executable: "target/executable/qualimap/qualimap"
   viash_version: "0.9.0-RC6"
-  git_commit: "1bbebbb5cb1e1abdefa478488aaa240909e54316"
+  git_commit: "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
   git_remote: "https://github.com/viash-hub/biobox"
 package_config:
   name: "biobox"
diff --git a/target/executable/qualimap/qualimap_rnaseq/qualimap_rnaseq b/target/executable/qualimap/qualimap
similarity index 99%
rename from target/executable/qualimap/qualimap_rnaseq/qualimap_rnaseq
rename to target/executable/qualimap/qualimap
index e3050630..f02fd6c0 100755
--- a/target/executable/qualimap/qualimap_rnaseq/qualimap_rnaseq
+++ b/target/executable/qualimap/qualimap
@@ -1,6 +1,6 @@
 #!/usr/bin/env bash
 
-# qualimap_rnaseq qualimap
+# qualimap qualimap
 # 
 # This wrapper script is auto-generated by viash 0.9.0-RC6 and is thus a
 # derivative work thereof. This software comes with ABSOLUTELY NO WARRANTY from
@@ -165,8 +165,8 @@ VIASH_META_RESOURCES_DIR=`ViashSourceDir ${BASH_SOURCE[0]}`
 VIASH_TARGET_DIR=`ViashFindTargetDir $VIASH_META_RESOURCES_DIR`
 
 # define meta fields
-VIASH_META_NAME="qualimap_rnaseq"
-VIASH_META_FUNCTIONALITY_NAME="qualimap_rnaseq"
+VIASH_META_NAME="qualimap"
+VIASH_META_FUNCTIONALITY_NAME="qualimap"
 VIASH_META_EXECUTABLE="$VIASH_META_RESOURCES_DIR/$VIASH_META_NAME"
 VIASH_META_CONFIG="$VIASH_META_RESOURCES_DIR/.config.vsh.yaml"
 VIASH_META_TEMP_DIR="$VIASH_TEMP"
@@ -174,7 +174,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "qualimap_rnaseq qualimap"
+  echo "qualimap qualimap"
   echo ""
   echo "Qualimap RNA-seq QC reports quality control metrics and bias estimations"
   echo "which are specific for whole transcriptome sequencing, including reads genomic"
@@ -540,10 +540,10 @@ RUN Rscript -e 'if (!requireNamespace("remotes", quietly = TRUE)) install.packag
   Rscript -e 'remotes::install_cran(c("optparse"), repos = "https://cran.rstudio.com")'
 
 LABEL org.opencontainers.image.authors="Dorien Roosen"
-LABEL org.opencontainers.image.description="Companion container for running component qualimap qualimap_rnaseq"
-LABEL org.opencontainers.image.created="2024-08-20T21:05:32Z"
+LABEL org.opencontainers.image.description="Companion container for running component qualimap"
+LABEL org.opencontainers.image.created="2024-08-20T21:04:56Z"
 LABEL org.opencontainers.image.source="https://bitbucket.org/kokonech/qualimap/commits/branch/master"
-LABEL org.opencontainers.image.revision="1bbebbb5cb1e1abdefa478488aaa240909e54316"
+LABEL org.opencontainers.image.revision="d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
 LABEL org.opencontainers.image.version="qualimap"
 
 VIASHDOCKER
@@ -667,7 +667,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "qualimap_rnaseq qualimap"
+            echo "qualimap qualimap"
             exit
             ;;
         --bam)
@@ -866,7 +866,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then
 
   # determine docker image id
   if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then
-    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/biobox/qualimap/qualimap_rnaseq:qualimap'
+    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/biobox/qualimap:qualimap'
   fi
 
   # print dockerfile
@@ -1234,7 +1234,7 @@ fi
 ViashDebug "Running command: $(echo $VIASH_CMD)"
 cat << VIASHEOF | eval $VIASH_CMD
 set -e
-tempscript=\$(mktemp "$VIASH_META_TEMP_DIR/viash-run-qualimap_rnaseq-XXXXXX").sh
+tempscript=\$(mktemp "$VIASH_META_TEMP_DIR/viash-run-qualimap-XXXXXX").sh
 function clean_up {
   rm "\$tempscript"
 }
diff --git a/target/executable/salmon/salmon_index/.config.vsh.yaml b/target/executable/salmon/salmon_index/.config.vsh.yaml
index ff5a6332..d8fc81a2 100644
--- a/target/executable/salmon/salmon_index/.config.vsh.yaml
+++ b/target/executable/salmon/salmon_index/.config.vsh.yaml
@@ -277,7 +277,7 @@ build_info:
   output: "target/executable/salmon/salmon_index"
   executable: "target/executable/salmon/salmon_index/salmon_index"
   viash_version: "0.9.0-RC6"
-  git_commit: "1bbebbb5cb1e1abdefa478488aaa240909e54316"
+  git_commit: "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
   git_remote: "https://github.com/viash-hub/biobox"
 package_config:
   name: "biobox"
diff --git a/target/executable/salmon/salmon_index/salmon_index b/target/executable/salmon/salmon_index/salmon_index
index 8b34e046..144c19b7 100755
--- a/target/executable/salmon/salmon_index/salmon_index
+++ b/target/executable/salmon/salmon_index/salmon_index
@@ -545,9 +545,9 @@ RUN salmon index -v 2>&1 | sed 's/salmon \([0-9.]*\)/salmon: \1/' > /var/softwar
 
 LABEL org.opencontainers.image.authors="Sai Nirmayi Yasa"
 LABEL org.opencontainers.image.description="Companion container for running component salmon salmon_index"
-LABEL org.opencontainers.image.created="2024-08-20T21:05:39Z"
+LABEL org.opencontainers.image.created="2024-08-20T21:05:04Z"
 LABEL org.opencontainers.image.source="https://github.com/COMBINE-lab/salmon"
-LABEL org.opencontainers.image.revision="1bbebbb5cb1e1abdefa478488aaa240909e54316"
+LABEL org.opencontainers.image.revision="d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
 LABEL org.opencontainers.image.version="qualimap"
 
 VIASHDOCKER
diff --git a/target/executable/salmon/salmon_quant/.config.vsh.yaml b/target/executable/salmon/salmon_quant/.config.vsh.yaml
index b793b429..85e47720 100644
--- a/target/executable/salmon/salmon_quant/.config.vsh.yaml
+++ b/target/executable/salmon/salmon_quant/.config.vsh.yaml
@@ -1173,7 +1173,7 @@ build_info:
   output: "target/executable/salmon/salmon_quant"
   executable: "target/executable/salmon/salmon_quant/salmon_quant"
   viash_version: "0.9.0-RC6"
-  git_commit: "1bbebbb5cb1e1abdefa478488aaa240909e54316"
+  git_commit: "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
   git_remote: "https://github.com/viash-hub/biobox"
 package_config:
   name: "biobox"
diff --git a/target/executable/salmon/salmon_quant/salmon_quant b/target/executable/salmon/salmon_quant/salmon_quant
index 4b336fa8..9fc4c908 100755
--- a/target/executable/salmon/salmon_quant/salmon_quant
+++ b/target/executable/salmon/salmon_quant/salmon_quant
@@ -1167,9 +1167,9 @@ RUN salmon index -v 2>&1 | sed 's/salmon \([0-9.]*\)/salmon: \1/' > /var/softwar
 
 LABEL org.opencontainers.image.authors="Sai Nirmayi Yasa"
 LABEL org.opencontainers.image.description="Companion container for running component salmon salmon_quant"
-LABEL org.opencontainers.image.created="2024-08-20T21:05:40Z"
+LABEL org.opencontainers.image.created="2024-08-20T21:05:04Z"
 LABEL org.opencontainers.image.source="https://github.com/COMBINE-lab/salmon"
-LABEL org.opencontainers.image.revision="1bbebbb5cb1e1abdefa478488aaa240909e54316"
+LABEL org.opencontainers.image.revision="d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
 LABEL org.opencontainers.image.version="qualimap"
 
 VIASHDOCKER
diff --git a/target/executable/samtools/samtools_collate/.config.vsh.yaml b/target/executable/samtools/samtools_collate/.config.vsh.yaml
index 9cbc26bc..b39bf21a 100644
--- a/target/executable/samtools/samtools_collate/.config.vsh.yaml
+++ b/target/executable/samtools/samtools_collate/.config.vsh.yaml
@@ -264,7 +264,7 @@ build_info:
   output: "target/executable/samtools/samtools_collate"
   executable: "target/executable/samtools/samtools_collate/samtools_collate"
   viash_version: "0.9.0-RC6"
-  git_commit: "1bbebbb5cb1e1abdefa478488aaa240909e54316"
+  git_commit: "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
   git_remote: "https://github.com/viash-hub/biobox"
 package_config:
   name: "biobox"
diff --git a/target/executable/samtools/samtools_collate/samtools_collate b/target/executable/samtools/samtools_collate/samtools_collate
index a6ff4fd1..b5975577 100755
--- a/target/executable/samtools/samtools_collate/samtools_collate
+++ b/target/executable/samtools/samtools_collate/samtools_collate
@@ -518,9 +518,9 @@ sed 's#Using ##;s# \([0-9\.]*\)$#: \1#' > /var/software_versions.txt
 
 LABEL org.opencontainers.image.authors="Emma Rousseau"
 LABEL org.opencontainers.image.description="Companion container for running component samtools samtools_collate"
-LABEL org.opencontainers.image.created="2024-08-20T21:05:30Z"
+LABEL org.opencontainers.image.created="2024-08-20T21:04:55Z"
 LABEL org.opencontainers.image.source="https://github.com/samtools/samtools"
-LABEL org.opencontainers.image.revision="1bbebbb5cb1e1abdefa478488aaa240909e54316"
+LABEL org.opencontainers.image.revision="d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
 LABEL org.opencontainers.image.version="qualimap"
 
 VIASHDOCKER
diff --git a/target/executable/samtools/samtools_faidx/.config.vsh.yaml b/target/executable/samtools/samtools_faidx/.config.vsh.yaml
index 6362d885..dc4e4ea4 100644
--- a/target/executable/samtools/samtools_faidx/.config.vsh.yaml
+++ b/target/executable/samtools/samtools_faidx/.config.vsh.yaml
@@ -243,7 +243,7 @@ build_info:
   output: "target/executable/samtools/samtools_faidx"
   executable: "target/executable/samtools/samtools_faidx/samtools_faidx"
   viash_version: "0.9.0-RC6"
-  git_commit: "1bbebbb5cb1e1abdefa478488aaa240909e54316"
+  git_commit: "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
   git_remote: "https://github.com/viash-hub/biobox"
 package_config:
   name: "biobox"
diff --git a/target/executable/samtools/samtools_faidx/samtools_faidx b/target/executable/samtools/samtools_faidx/samtools_faidx
index 0d92ee13..89d45c84 100755
--- a/target/executable/samtools/samtools_faidx/samtools_faidx
+++ b/target/executable/samtools/samtools_faidx/samtools_faidx
@@ -511,9 +511,9 @@ sed 's#Using ##;s# \([0-9\.]*\)$#: \1#' > /var/software_versions.txt
 
 LABEL org.opencontainers.image.authors="Emma Rousseau"
 LABEL org.opencontainers.image.description="Companion container for running component samtools samtools_faidx"
-LABEL org.opencontainers.image.created="2024-08-20T21:05:30Z"
+LABEL org.opencontainers.image.created="2024-08-20T21:04:54Z"
 LABEL org.opencontainers.image.source="https://github.com/samtools/samtools"
-LABEL org.opencontainers.image.revision="1bbebbb5cb1e1abdefa478488aaa240909e54316"
+LABEL org.opencontainers.image.revision="d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
 LABEL org.opencontainers.image.version="qualimap"
 
 VIASHDOCKER
diff --git a/target/executable/samtools/samtools_fasta/.config.vsh.yaml b/target/executable/samtools/samtools_fasta/.config.vsh.yaml
index bfe8294d..a26c8480 100644
--- a/target/executable/samtools/samtools_fasta/.config.vsh.yaml
+++ b/target/executable/samtools/samtools_fasta/.config.vsh.yaml
@@ -433,7 +433,7 @@ build_info:
   output: "target/executable/samtools/samtools_fasta"
   executable: "target/executable/samtools/samtools_fasta/samtools_fasta"
   viash_version: "0.9.0-RC6"
-  git_commit: "1bbebbb5cb1e1abdefa478488aaa240909e54316"
+  git_commit: "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
   git_remote: "https://github.com/viash-hub/biobox"
 package_config:
   name: "biobox"
diff --git a/target/executable/samtools/samtools_fasta/samtools_fasta b/target/executable/samtools/samtools_fasta/samtools_fasta
index d6fd2c98..123c3886 100755
--- a/target/executable/samtools/samtools_fasta/samtools_fasta
+++ b/target/executable/samtools/samtools_fasta/samtools_fasta
@@ -624,9 +624,9 @@ sed 's#Using ##;s# \([0-9\.]*\)$#: \1#' > /var/software_versions.txt
 
 LABEL org.opencontainers.image.authors="Emma Rousseau"
 LABEL org.opencontainers.image.description="Companion container for running component samtools samtools_fasta"
-LABEL org.opencontainers.image.created="2024-08-20T21:05:31Z"
+LABEL org.opencontainers.image.created="2024-08-20T21:04:55Z"
 LABEL org.opencontainers.image.source="https://github.com/samtools/samtools"
-LABEL org.opencontainers.image.revision="1bbebbb5cb1e1abdefa478488aaa240909e54316"
+LABEL org.opencontainers.image.revision="d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
 LABEL org.opencontainers.image.version="qualimap"
 
 VIASHDOCKER
diff --git a/target/executable/samtools/samtools_fastq/.config.vsh.yaml b/target/executable/samtools/samtools_fastq/.config.vsh.yaml
index c64b9cf0..f6c2eb33 100644
--- a/target/executable/samtools/samtools_fastq/.config.vsh.yaml
+++ b/target/executable/samtools/samtools_fastq/.config.vsh.yaml
@@ -433,7 +433,7 @@ build_info:
   output: "target/executable/samtools/samtools_fastq"
   executable: "target/executable/samtools/samtools_fastq/samtools_fastq"
   viash_version: "0.9.0-RC6"
-  git_commit: "1bbebbb5cb1e1abdefa478488aaa240909e54316"
+  git_commit: "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
   git_remote: "https://github.com/viash-hub/biobox"
 package_config:
   name: "biobox"
diff --git a/target/executable/samtools/samtools_fastq/samtools_fastq b/target/executable/samtools/samtools_fastq/samtools_fastq
index 56e741d0..acde271b 100755
--- a/target/executable/samtools/samtools_fastq/samtools_fastq
+++ b/target/executable/samtools/samtools_fastq/samtools_fastq
@@ -625,9 +625,9 @@ sed 's#Using ##;s# \([0-9\.]*\)$#: \1#' > /var/software_versions.txt
 
 LABEL org.opencontainers.image.authors="Emma Rousseau"
 LABEL org.opencontainers.image.description="Companion container for running component samtools samtools_fastq"
-LABEL org.opencontainers.image.created="2024-08-20T21:05:29Z"
+LABEL org.opencontainers.image.created="2024-08-20T21:04:54Z"
 LABEL org.opencontainers.image.source="https://github.com/samtools/samtools"
-LABEL org.opencontainers.image.revision="1bbebbb5cb1e1abdefa478488aaa240909e54316"
+LABEL org.opencontainers.image.revision="d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
 LABEL org.opencontainers.image.version="qualimap"
 
 VIASHDOCKER
diff --git a/target/executable/samtools/samtools_flagstat/.config.vsh.yaml b/target/executable/samtools/samtools_flagstat/.config.vsh.yaml
index 7de2d001..6a8f31e1 100644
--- a/target/executable/samtools/samtools_flagstat/.config.vsh.yaml
+++ b/target/executable/samtools/samtools_flagstat/.config.vsh.yaml
@@ -173,7 +173,7 @@ build_info:
   output: "target/executable/samtools/samtools_flagstat"
   executable: "target/executable/samtools/samtools_flagstat/samtools_flagstat"
   viash_version: "0.9.0-RC6"
-  git_commit: "1bbebbb5cb1e1abdefa478488aaa240909e54316"
+  git_commit: "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
   git_remote: "https://github.com/viash-hub/biobox"
 package_config:
   name: "biobox"
diff --git a/target/executable/samtools/samtools_flagstat/samtools_flagstat b/target/executable/samtools/samtools_flagstat/samtools_flagstat
index 8f979150..a360f0fc 100755
--- a/target/executable/samtools/samtools_flagstat/samtools_flagstat
+++ b/target/executable/samtools/samtools_flagstat/samtools_flagstat
@@ -473,9 +473,9 @@ sed 's#Using ##;s# \([0-9\.]*\)$#: \1#' > /var/software_versions.txt
 
 LABEL org.opencontainers.image.authors="Emma Rousseau"
 LABEL org.opencontainers.image.description="Companion container for running component samtools samtools_flagstat"
-LABEL org.opencontainers.image.created="2024-08-20T21:05:29Z"
+LABEL org.opencontainers.image.created="2024-08-20T21:04:54Z"
 LABEL org.opencontainers.image.source="https://github.com/samtools/samtools"
-LABEL org.opencontainers.image.revision="1bbebbb5cb1e1abdefa478488aaa240909e54316"
+LABEL org.opencontainers.image.revision="d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
 LABEL org.opencontainers.image.version="qualimap"
 
 VIASHDOCKER
diff --git a/target/executable/samtools/samtools_idxstats/.config.vsh.yaml b/target/executable/samtools/samtools_idxstats/.config.vsh.yaml
index 2fafb153..eaca3632 100644
--- a/target/executable/samtools/samtools_idxstats/.config.vsh.yaml
+++ b/target/executable/samtools/samtools_idxstats/.config.vsh.yaml
@@ -183,7 +183,7 @@ build_info:
   output: "target/executable/samtools/samtools_idxstats"
   executable: "target/executable/samtools/samtools_idxstats/samtools_idxstats"
   viash_version: "0.9.0-RC6"
-  git_commit: "1bbebbb5cb1e1abdefa478488aaa240909e54316"
+  git_commit: "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
   git_remote: "https://github.com/viash-hub/biobox"
 package_config:
   name: "biobox"
diff --git a/target/executable/samtools/samtools_idxstats/samtools_idxstats b/target/executable/samtools/samtools_idxstats/samtools_idxstats
index d2676f82..6879fac6 100755
--- a/target/executable/samtools/samtools_idxstats/samtools_idxstats
+++ b/target/executable/samtools/samtools_idxstats/samtools_idxstats
@@ -477,9 +477,9 @@ sed 's#Using ##;s# \([0-9\.]*\)$#: \1#' > /var/software_versions.txt
 
 LABEL org.opencontainers.image.authors="Emma Rousseau"
 LABEL org.opencontainers.image.description="Companion container for running component samtools samtools_idxstats"
-LABEL org.opencontainers.image.created="2024-08-20T21:05:28Z"
+LABEL org.opencontainers.image.created="2024-08-20T21:04:53Z"
 LABEL org.opencontainers.image.source="https://github.com/samtools/samtools"
-LABEL org.opencontainers.image.revision="1bbebbb5cb1e1abdefa478488aaa240909e54316"
+LABEL org.opencontainers.image.revision="d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
 LABEL org.opencontainers.image.version="qualimap"
 
 VIASHDOCKER
diff --git a/target/executable/samtools/samtools_index/.config.vsh.yaml b/target/executable/samtools/samtools_index/.config.vsh.yaml
index 799bd5f3..e7f0ad05 100644
--- a/target/executable/samtools/samtools_index/.config.vsh.yaml
+++ b/target/executable/samtools/samtools_index/.config.vsh.yaml
@@ -189,7 +189,7 @@ build_info:
   output: "target/executable/samtools/samtools_index"
   executable: "target/executable/samtools/samtools_index/samtools_index"
   viash_version: "0.9.0-RC6"
-  git_commit: "1bbebbb5cb1e1abdefa478488aaa240909e54316"
+  git_commit: "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
   git_remote: "https://github.com/viash-hub/biobox"
 package_config:
   name: "biobox"
diff --git a/target/executable/samtools/samtools_index/samtools_index b/target/executable/samtools/samtools_index/samtools_index
index dd827b96..dcc71fc3 100755
--- a/target/executable/samtools/samtools_index/samtools_index
+++ b/target/executable/samtools/samtools_index/samtools_index
@@ -484,9 +484,9 @@ sed 's#Using ##;s# \([0-9\.]*\)$#: \1#' > /var/software_versions.txt
 
 LABEL org.opencontainers.image.authors="Emma Rousseau"
 LABEL org.opencontainers.image.description="Companion container for running component samtools samtools_index"
-LABEL org.opencontainers.image.created="2024-08-20T21:05:28Z"
+LABEL org.opencontainers.image.created="2024-08-20T21:04:53Z"
 LABEL org.opencontainers.image.source="https://github.com/samtools/samtools"
-LABEL org.opencontainers.image.revision="1bbebbb5cb1e1abdefa478488aaa240909e54316"
+LABEL org.opencontainers.image.revision="d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
 LABEL org.opencontainers.image.version="qualimap"
 
 VIASHDOCKER
diff --git a/target/executable/samtools/samtools_sort/.config.vsh.yaml b/target/executable/samtools/samtools_sort/.config.vsh.yaml
index d0fb78c9..48168420 100644
--- a/target/executable/samtools/samtools_sort/.config.vsh.yaml
+++ b/target/executable/samtools/samtools_sort/.config.vsh.yaml
@@ -332,7 +332,7 @@ build_info:
   output: "target/executable/samtools/samtools_sort"
   executable: "target/executable/samtools/samtools_sort/samtools_sort"
   viash_version: "0.9.0-RC6"
-  git_commit: "1bbebbb5cb1e1abdefa478488aaa240909e54316"
+  git_commit: "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
   git_remote: "https://github.com/viash-hub/biobox"
 package_config:
   name: "biobox"
diff --git a/target/executable/samtools/samtools_sort/samtools_sort b/target/executable/samtools/samtools_sort/samtools_sort
index f8c0af5e..c7062689 100755
--- a/target/executable/samtools/samtools_sort/samtools_sort
+++ b/target/executable/samtools/samtools_sort/samtools_sort
@@ -555,9 +555,9 @@ sed 's#Using ##;s# \([0-9\.]*\)$#: \1#' > /var/software_versions.txt
 
 LABEL org.opencontainers.image.authors="Emma Rousseau"
 LABEL org.opencontainers.image.description="Companion container for running component samtools samtools_sort"
-LABEL org.opencontainers.image.created="2024-08-20T21:05:31Z"
+LABEL org.opencontainers.image.created="2024-08-20T21:04:55Z"
 LABEL org.opencontainers.image.source="https://github.com/samtools/samtools"
-LABEL org.opencontainers.image.revision="1bbebbb5cb1e1abdefa478488aaa240909e54316"
+LABEL org.opencontainers.image.revision="d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
 LABEL org.opencontainers.image.version="qualimap"
 
 VIASHDOCKER
diff --git a/target/executable/samtools/samtools_stats/.config.vsh.yaml b/target/executable/samtools/samtools_stats/.config.vsh.yaml
index b2e34c13..999b9f22 100644
--- a/target/executable/samtools/samtools_stats/.config.vsh.yaml
+++ b/target/executable/samtools/samtools_stats/.config.vsh.yaml
@@ -401,7 +401,7 @@ build_info:
   output: "target/executable/samtools/samtools_stats"
   executable: "target/executable/samtools/samtools_stats/samtools_stats"
   viash_version: "0.9.0-RC6"
-  git_commit: "1bbebbb5cb1e1abdefa478488aaa240909e54316"
+  git_commit: "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
   git_remote: "https://github.com/viash-hub/biobox"
 package_config:
   name: "biobox"
diff --git a/target/executable/samtools/samtools_stats/samtools_stats b/target/executable/samtools/samtools_stats/samtools_stats
index fc67bd90..fb2eaac1 100755
--- a/target/executable/samtools/samtools_stats/samtools_stats
+++ b/target/executable/samtools/samtools_stats/samtools_stats
@@ -574,9 +574,9 @@ sed 's#Using ##;s# \([0-9\.]*\)$#: \1#' > /var/software_versions.txt
 
 LABEL org.opencontainers.image.authors="Emma Rousseau"
 LABEL org.opencontainers.image.description="Companion container for running component samtools samtools_stats"
-LABEL org.opencontainers.image.created="2024-08-20T21:05:31Z"
+LABEL org.opencontainers.image.created="2024-08-20T21:04:56Z"
 LABEL org.opencontainers.image.source="https://github.com/samtools/samtools"
-LABEL org.opencontainers.image.revision="1bbebbb5cb1e1abdefa478488aaa240909e54316"
+LABEL org.opencontainers.image.revision="d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
 LABEL org.opencontainers.image.version="qualimap"
 
 VIASHDOCKER
diff --git a/target/executable/samtools/samtools_view/.config.vsh.yaml b/target/executable/samtools/samtools_view/.config.vsh.yaml
index c361bffa..b957e10a 100644
--- a/target/executable/samtools/samtools_view/.config.vsh.yaml
+++ b/target/executable/samtools/samtools_view/.config.vsh.yaml
@@ -665,7 +665,7 @@ build_info:
   output: "target/executable/samtools/samtools_view"
   executable: "target/executable/samtools/samtools_view/samtools_view"
   viash_version: "0.9.0-RC6"
-  git_commit: "1bbebbb5cb1e1abdefa478488aaa240909e54316"
+  git_commit: "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
   git_remote: "https://github.com/viash-hub/biobox"
 package_config:
   name: "biobox"
diff --git a/target/executable/samtools/samtools_view/samtools_view b/target/executable/samtools/samtools_view/samtools_view
index 286be13a..ba2f358c 100755
--- a/target/executable/samtools/samtools_view/samtools_view
+++ b/target/executable/samtools/samtools_view/samtools_view
@@ -824,9 +824,9 @@ sed 's#Using ##;s# \([0-9\.]*\)$#: \1#' > /var/software_versions.txt
 
 LABEL org.opencontainers.image.authors="Emma Rousseau"
 LABEL org.opencontainers.image.description="Companion container for running component samtools samtools_view"
-LABEL org.opencontainers.image.created="2024-08-20T21:05:29Z"
+LABEL org.opencontainers.image.created="2024-08-20T21:04:53Z"
 LABEL org.opencontainers.image.source="https://github.com/samtools/samtools"
-LABEL org.opencontainers.image.revision="1bbebbb5cb1e1abdefa478488aaa240909e54316"
+LABEL org.opencontainers.image.revision="d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
 LABEL org.opencontainers.image.version="qualimap"
 
 VIASHDOCKER
diff --git a/target/executable/seqtk/seqtk_sample/.config.vsh.yaml b/target/executable/seqtk/seqtk_sample/.config.vsh.yaml
index 2ea0fe79..9ca08a73 100644
--- a/target/executable/seqtk/seqtk_sample/.config.vsh.yaml
+++ b/target/executable/seqtk/seqtk_sample/.config.vsh.yaml
@@ -173,7 +173,7 @@ build_info:
   output: "target/executable/seqtk/seqtk_sample"
   executable: "target/executable/seqtk/seqtk_sample/seqtk_sample"
   viash_version: "0.9.0-RC6"
-  git_commit: "1bbebbb5cb1e1abdefa478488aaa240909e54316"
+  git_commit: "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
   git_remote: "https://github.com/viash-hub/biobox"
 package_config:
   name: "biobox"
diff --git a/target/executable/seqtk/seqtk_sample/seqtk_sample b/target/executable/seqtk/seqtk_sample/seqtk_sample
index e91ea730..ba5e96bc 100755
--- a/target/executable/seqtk/seqtk_sample/seqtk_sample
+++ b/target/executable/seqtk/seqtk_sample/seqtk_sample
@@ -480,9 +480,9 @@ FROM quay.io/biocontainers/seqtk:1.4--he4a0461_2
 ENTRYPOINT []
 LABEL org.opencontainers.image.authors="Jakub Majercik"
 LABEL org.opencontainers.image.description="Companion container for running component seqtk seqtk_sample"
-LABEL org.opencontainers.image.created="2024-08-20T21:05:43Z"
+LABEL org.opencontainers.image.created="2024-08-20T21:05:07Z"
 LABEL org.opencontainers.image.source="https://github.com/lh3/seqtk/tree/v1.4"
-LABEL org.opencontainers.image.revision="1bbebbb5cb1e1abdefa478488aaa240909e54316"
+LABEL org.opencontainers.image.revision="d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
 LABEL org.opencontainers.image.version="qualimap"
 
 VIASHDOCKER
diff --git a/target/executable/seqtk/seqtk_subseq/.config.vsh.yaml b/target/executable/seqtk/seqtk_subseq/.config.vsh.yaml
index 630be33f..c41ce46d 100644
--- a/target/executable/seqtk/seqtk_subseq/.config.vsh.yaml
+++ b/target/executable/seqtk/seqtk_subseq/.config.vsh.yaml
@@ -196,7 +196,7 @@ build_info:
   output: "target/executable/seqtk/seqtk_subseq"
   executable: "target/executable/seqtk/seqtk_subseq/seqtk_subseq"
   viash_version: "0.9.0-RC6"
-  git_commit: "1bbebbb5cb1e1abdefa478488aaa240909e54316"
+  git_commit: "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
   git_remote: "https://github.com/viash-hub/biobox"
 package_config:
   name: "biobox"
diff --git a/target/executable/seqtk/seqtk_subseq/seqtk_subseq b/target/executable/seqtk/seqtk_subseq/seqtk_subseq
index 47343f03..83b0fab6 100755
--- a/target/executable/seqtk/seqtk_subseq/seqtk_subseq
+++ b/target/executable/seqtk/seqtk_subseq/seqtk_subseq
@@ -490,9 +490,9 @@ RUN echo $(echo $(seqtk 2>&1) | sed -n 's/.*\(Version: [^ ]*\).*/\1/p') > /var/s
 
 LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo"
 LABEL org.opencontainers.image.description="Companion container for running component seqtk seqtk_subseq"
-LABEL org.opencontainers.image.created="2024-08-20T21:05:42Z"
+LABEL org.opencontainers.image.created="2024-08-20T21:05:07Z"
 LABEL org.opencontainers.image.source="https://github.com/lh3/seqtk/tree/v1.4"
-LABEL org.opencontainers.image.revision="1bbebbb5cb1e1abdefa478488aaa240909e54316"
+LABEL org.opencontainers.image.revision="d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
 LABEL org.opencontainers.image.version="qualimap"
 
 VIASHDOCKER
diff --git a/target/executable/star/star_align_reads/.config.vsh.yaml b/target/executable/star/star_align_reads/.config.vsh.yaml
index ae7d1da2..35b63179 100644
--- a/target/executable/star/star_align_reads/.config.vsh.yaml
+++ b/target/executable/star/star_align_reads/.config.vsh.yaml
@@ -2663,7 +2663,7 @@ build_info:
   output: "target/executable/star/star_align_reads"
   executable: "target/executable/star/star_align_reads/star_align_reads"
   viash_version: "0.9.0-RC6"
-  git_commit: "1bbebbb5cb1e1abdefa478488aaa240909e54316"
+  git_commit: "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
   git_remote: "https://github.com/viash-hub/biobox"
 package_config:
   name: "biobox"
diff --git a/target/executable/star/star_align_reads/star_align_reads b/target/executable/star/star_align_reads/star_align_reads
index c6268094..24ae4e6b 100755
--- a/target/executable/star/star_align_reads/star_align_reads
+++ b/target/executable/star/star_align_reads/star_align_reads
@@ -1919,9 +1919,9 @@ RUN STAR --version | sed 's#\(.*\)#star: "\1"#' > /var/software_versions.txt
 
 LABEL org.opencontainers.image.authors="Angela Oliveira Pisco, Robrecht Cannoodt"
 LABEL org.opencontainers.image.description="Companion container for running component star star_align_reads"
-LABEL org.opencontainers.image.created="2024-08-20T21:05:34Z"
+LABEL org.opencontainers.image.created="2024-08-20T21:04:59Z"
 LABEL org.opencontainers.image.source="https://github.com/alexdobin/STAR"
-LABEL org.opencontainers.image.revision="1bbebbb5cb1e1abdefa478488aaa240909e54316"
+LABEL org.opencontainers.image.revision="d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
 LABEL org.opencontainers.image.version="qualimap"
 
 VIASHDOCKER
diff --git a/target/executable/star/star_genome_generate/.config.vsh.yaml b/target/executable/star/star_genome_generate/.config.vsh.yaml
index c23bb445..e3f4bc49 100644
--- a/target/executable/star/star_genome_generate/.config.vsh.yaml
+++ b/target/executable/star/star_genome_generate/.config.vsh.yaml
@@ -333,7 +333,7 @@ build_info:
   output: "target/executable/star/star_genome_generate"
   executable: "target/executable/star/star_genome_generate/star_genome_generate"
   viash_version: "0.9.0-RC6"
-  git_commit: "1bbebbb5cb1e1abdefa478488aaa240909e54316"
+  git_commit: "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
   git_remote: "https://github.com/viash-hub/biobox"
 package_config:
   name: "biobox"
diff --git a/target/executable/star/star_genome_generate/star_genome_generate b/target/executable/star/star_genome_generate/star_genome_generate
index 1f9036d2..1d8e6ae0 100755
--- a/target/executable/star/star_genome_generate/star_genome_generate
+++ b/target/executable/star/star_genome_generate/star_genome_generate
@@ -576,9 +576,9 @@ RUN STAR --version | sed 's#\(.*\)#star: "\1"#' > /var/software_versions.txt
 
 LABEL org.opencontainers.image.authors="Sai Nirmayi Yasa"
 LABEL org.opencontainers.image.description="Companion container for running component star star_genome_generate"
-LABEL org.opencontainers.image.created="2024-08-20T21:05:34Z"
+LABEL org.opencontainers.image.created="2024-08-20T21:04:59Z"
 LABEL org.opencontainers.image.source="https://github.com/alexdobin/STAR"
-LABEL org.opencontainers.image.revision="1bbebbb5cb1e1abdefa478488aaa240909e54316"
+LABEL org.opencontainers.image.revision="d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
 LABEL org.opencontainers.image.version="qualimap"
 
 VIASHDOCKER
diff --git a/target/executable/umi_tools/umi_tools_dedup/.config.vsh.yaml b/target/executable/umi_tools/umi_tools_dedup/.config.vsh.yaml
index 34887310..324b21dd 100644
--- a/target/executable/umi_tools/umi_tools_dedup/.config.vsh.yaml
+++ b/target/executable/umi_tools/umi_tools_dedup/.config.vsh.yaml
@@ -611,7 +611,7 @@ build_info:
   output: "target/executable/umi_tools/umi_tools_dedup"
   executable: "target/executable/umi_tools/umi_tools_dedup/umi_tools_dedup"
   viash_version: "0.9.0-RC6"
-  git_commit: "1bbebbb5cb1e1abdefa478488aaa240909e54316"
+  git_commit: "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
   git_remote: "https://github.com/viash-hub/biobox"
 package_config:
   name: "biobox"
diff --git a/target/executable/umi_tools/umi_tools_dedup/umi_tools_dedup b/target/executable/umi_tools/umi_tools_dedup/umi_tools_dedup
index 8524cad1..d3221208 100755
--- a/target/executable/umi_tools/umi_tools_dedup/umi_tools_dedup
+++ b/target/executable/umi_tools/umi_tools_dedup/umi_tools_dedup
@@ -769,9 +769,9 @@ RUN umi_tools -v | sed 's/ version//g' > /var/software_versions.txt
 
 LABEL org.opencontainers.image.authors="Emma Rousseau"
 LABEL org.opencontainers.image.description="Companion container for running component umi_tools umi_tools_dedup"
-LABEL org.opencontainers.image.created="2024-08-20T21:05:32Z"
+LABEL org.opencontainers.image.created="2024-08-20T21:04:57Z"
 LABEL org.opencontainers.image.source="https://github.com/CGATOxford/UMI-tools"
-LABEL org.opencontainers.image.revision="1bbebbb5cb1e1abdefa478488aaa240909e54316"
+LABEL org.opencontainers.image.revision="d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
 LABEL org.opencontainers.image.version="qualimap"
 
 VIASHDOCKER
diff --git a/target/executable/umi_tools/umi_tools_extract/.config.vsh.yaml b/target/executable/umi_tools/umi_tools_extract/.config.vsh.yaml
index 9687d9b9..92bc5e73 100644
--- a/target/executable/umi_tools/umi_tools_extract/.config.vsh.yaml
+++ b/target/executable/umi_tools/umi_tools_extract/.config.vsh.yaml
@@ -449,7 +449,7 @@ build_info:
   output: "target/executable/umi_tools/umi_tools_extract"
   executable: "target/executable/umi_tools/umi_tools_extract/umi_tools_extract"
   viash_version: "0.9.0-RC6"
-  git_commit: "1bbebbb5cb1e1abdefa478488aaa240909e54316"
+  git_commit: "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
   git_remote: "https://github.com/viash-hub/biobox"
 package_config:
   name: "biobox"
diff --git a/target/executable/umi_tools/umi_tools_extract/umi_tools_extract b/target/executable/umi_tools/umi_tools_extract/umi_tools_extract
index 708b9cd6..da80980c 100755
--- a/target/executable/umi_tools/umi_tools_extract/umi_tools_extract
+++ b/target/executable/umi_tools/umi_tools_extract/umi_tools_extract
@@ -636,9 +636,9 @@ ENTRYPOINT []
 RUN umi_tools -v | sed 's/ version//g' > /var/software_versions.txt
 
 LABEL org.opencontainers.image.description="Companion container for running component umi_tools umi_tools_extract"
-LABEL org.opencontainers.image.created="2024-08-20T21:05:32Z"
+LABEL org.opencontainers.image.created="2024-08-20T21:04:57Z"
 LABEL org.opencontainers.image.source="https://github.com/CGATOxford/UMI-tools"
-LABEL org.opencontainers.image.revision="1bbebbb5cb1e1abdefa478488aaa240909e54316"
+LABEL org.opencontainers.image.revision="d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
 LABEL org.opencontainers.image.version="qualimap"
 
 VIASHDOCKER
diff --git a/target/nextflow/agat/agat_convert_bed2gff/.config.vsh.yaml b/target/nextflow/agat/agat_convert_bed2gff/.config.vsh.yaml
index 750a997e..af7f58d2 100644
--- a/target/nextflow/agat/agat_convert_bed2gff/.config.vsh.yaml
+++ b/target/nextflow/agat/agat_convert_bed2gff/.config.vsh.yaml
@@ -235,7 +235,7 @@ build_info:
   output: "target/nextflow/agat/agat_convert_bed2gff"
   executable: "target/nextflow/agat/agat_convert_bed2gff/main.nf"
   viash_version: "0.9.0-RC6"
-  git_commit: "1bbebbb5cb1e1abdefa478488aaa240909e54316"
+  git_commit: "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
   git_remote: "https://github.com/viash-hub/biobox"
 package_config:
   name: "biobox"
diff --git a/target/nextflow/agat/agat_convert_bed2gff/main.nf b/target/nextflow/agat/agat_convert_bed2gff/main.nf
index ffa23405..6be54ff1 100644
--- a/target/nextflow/agat/agat_convert_bed2gff/main.nf
+++ b/target/nextflow/agat/agat_convert_bed2gff/main.nf
@@ -3066,7 +3066,7 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/agat/agat_convert_bed2gff",
     "viash_version" : "0.9.0-RC6",
-    "git_commit" : "1bbebbb5cb1e1abdefa478488aaa240909e54316",
+    "git_commit" : "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e",
     "git_remote" : "https://github.com/viash-hub/biobox"
   },
   "package_config" : {
diff --git a/target/nextflow/agat/agat_convert_embl2gff/.config.vsh.yaml b/target/nextflow/agat/agat_convert_embl2gff/.config.vsh.yaml
index 33d10789..596b6a48 100644
--- a/target/nextflow/agat/agat_convert_embl2gff/.config.vsh.yaml
+++ b/target/nextflow/agat/agat_convert_embl2gff/.config.vsh.yaml
@@ -225,7 +225,7 @@ build_info:
   output: "target/nextflow/agat/agat_convert_embl2gff"
   executable: "target/nextflow/agat/agat_convert_embl2gff/main.nf"
   viash_version: "0.9.0-RC6"
-  git_commit: "1bbebbb5cb1e1abdefa478488aaa240909e54316"
+  git_commit: "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
   git_remote: "https://github.com/viash-hub/biobox"
 package_config:
   name: "biobox"
diff --git a/target/nextflow/agat/agat_convert_embl2gff/main.nf b/target/nextflow/agat/agat_convert_embl2gff/main.nf
index 371e2328..f3fede9e 100644
--- a/target/nextflow/agat/agat_convert_embl2gff/main.nf
+++ b/target/nextflow/agat/agat_convert_embl2gff/main.nf
@@ -3059,7 +3059,7 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/agat/agat_convert_embl2gff",
     "viash_version" : "0.9.0-RC6",
-    "git_commit" : "1bbebbb5cb1e1abdefa478488aaa240909e54316",
+    "git_commit" : "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e",
     "git_remote" : "https://github.com/viash-hub/biobox"
   },
   "package_config" : {
diff --git a/target/nextflow/agat/agat_convert_sp_gff2gtf/.config.vsh.yaml b/target/nextflow/agat/agat_convert_sp_gff2gtf/.config.vsh.yaml
index e82716f0..696e33be 100644
--- a/target/nextflow/agat/agat_convert_sp_gff2gtf/.config.vsh.yaml
+++ b/target/nextflow/agat/agat_convert_sp_gff2gtf/.config.vsh.yaml
@@ -228,7 +228,7 @@ build_info:
   output: "target/nextflow/agat/agat_convert_sp_gff2gtf"
   executable: "target/nextflow/agat/agat_convert_sp_gff2gtf/main.nf"
   viash_version: "0.9.0-RC6"
-  git_commit: "1bbebbb5cb1e1abdefa478488aaa240909e54316"
+  git_commit: "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
   git_remote: "https://github.com/viash-hub/biobox"
 package_config:
   name: "biobox"
diff --git a/target/nextflow/agat/agat_convert_sp_gff2gtf/main.nf b/target/nextflow/agat/agat_convert_sp_gff2gtf/main.nf
index e74e387e..4873ad06 100644
--- a/target/nextflow/agat/agat_convert_sp_gff2gtf/main.nf
+++ b/target/nextflow/agat/agat_convert_sp_gff2gtf/main.nf
@@ -3042,7 +3042,7 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/agat/agat_convert_sp_gff2gtf",
     "viash_version" : "0.9.0-RC6",
-    "git_commit" : "1bbebbb5cb1e1abdefa478488aaa240909e54316",
+    "git_commit" : "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e",
     "git_remote" : "https://github.com/viash-hub/biobox"
   },
   "package_config" : {
diff --git a/target/nextflow/agat/agat_convert_sp_gff2tsv/.config.vsh.yaml b/target/nextflow/agat/agat_convert_sp_gff2tsv/.config.vsh.yaml
index b149ee3b..8bdcce58 100644
--- a/target/nextflow/agat/agat_convert_sp_gff2tsv/.config.vsh.yaml
+++ b/target/nextflow/agat/agat_convert_sp_gff2tsv/.config.vsh.yaml
@@ -188,7 +188,7 @@ build_info:
   output: "target/nextflow/agat/agat_convert_sp_gff2tsv"
   executable: "target/nextflow/agat/agat_convert_sp_gff2tsv/main.nf"
   viash_version: "0.9.0-RC6"
-  git_commit: "1bbebbb5cb1e1abdefa478488aaa240909e54316"
+  git_commit: "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
   git_remote: "https://github.com/viash-hub/biobox"
 package_config:
   name: "biobox"
diff --git a/target/nextflow/agat/agat_convert_sp_gff2tsv/main.nf b/target/nextflow/agat/agat_convert_sp_gff2tsv/main.nf
index 8ed45675..583fb45e 100644
--- a/target/nextflow/agat/agat_convert_sp_gff2tsv/main.nf
+++ b/target/nextflow/agat/agat_convert_sp_gff2tsv/main.nf
@@ -3020,7 +3020,7 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/agat/agat_convert_sp_gff2tsv",
     "viash_version" : "0.9.0-RC6",
-    "git_commit" : "1bbebbb5cb1e1abdefa478488aaa240909e54316",
+    "git_commit" : "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e",
     "git_remote" : "https://github.com/viash-hub/biobox"
   },
   "package_config" : {
diff --git a/target/nextflow/agat/agat_convert_sp_gxf2gxf/.config.vsh.yaml b/target/nextflow/agat/agat_convert_sp_gxf2gxf/.config.vsh.yaml
index 367fbd47..31e99f8c 100644
--- a/target/nextflow/agat/agat_convert_sp_gxf2gxf/.config.vsh.yaml
+++ b/target/nextflow/agat/agat_convert_sp_gxf2gxf/.config.vsh.yaml
@@ -195,7 +195,7 @@ build_info:
   output: "target/nextflow/agat/agat_convert_sp_gxf2gxf"
   executable: "target/nextflow/agat/agat_convert_sp_gxf2gxf/main.nf"
   viash_version: "0.9.0-RC6"
-  git_commit: "1bbebbb5cb1e1abdefa478488aaa240909e54316"
+  git_commit: "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
   git_remote: "https://github.com/viash-hub/biobox"
 package_config:
   name: "biobox"
diff --git a/target/nextflow/agat/agat_convert_sp_gxf2gxf/main.nf b/target/nextflow/agat/agat_convert_sp_gxf2gxf/main.nf
index adc2c930..e961f977 100644
--- a/target/nextflow/agat/agat_convert_sp_gxf2gxf/main.nf
+++ b/target/nextflow/agat/agat_convert_sp_gxf2gxf/main.nf
@@ -3020,7 +3020,7 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/agat/agat_convert_sp_gxf2gxf",
     "viash_version" : "0.9.0-RC6",
-    "git_commit" : "1bbebbb5cb1e1abdefa478488aaa240909e54316",
+    "git_commit" : "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e",
     "git_remote" : "https://github.com/viash-hub/biobox"
   },
   "package_config" : {
diff --git a/target/nextflow/arriba/.config.vsh.yaml b/target/nextflow/arriba/.config.vsh.yaml
index bf838016..d16f15f4 100644
--- a/target/nextflow/arriba/.config.vsh.yaml
+++ b/target/nextflow/arriba/.config.vsh.yaml
@@ -706,7 +706,7 @@ build_info:
   output: "target/nextflow/arriba"
   executable: "target/nextflow/arriba/main.nf"
   viash_version: "0.9.0-RC6"
-  git_commit: "1bbebbb5cb1e1abdefa478488aaa240909e54316"
+  git_commit: "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
   git_remote: "https://github.com/viash-hub/biobox"
 package_config:
   name: "biobox"
diff --git a/target/nextflow/arriba/main.nf b/target/nextflow/arriba/main.nf
index 9e18b476..85cfd2c3 100644
--- a/target/nextflow/arriba/main.nf
+++ b/target/nextflow/arriba/main.nf
@@ -3566,7 +3566,7 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/arriba",
     "viash_version" : "0.9.0-RC6",
-    "git_commit" : "1bbebbb5cb1e1abdefa478488aaa240909e54316",
+    "git_commit" : "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e",
     "git_remote" : "https://github.com/viash-hub/biobox"
   },
   "package_config" : {
diff --git a/target/nextflow/bcl_convert/.config.vsh.yaml b/target/nextflow/bcl_convert/.config.vsh.yaml
index 457ce8d6..7781a7e6 100644
--- a/target/nextflow/bcl_convert/.config.vsh.yaml
+++ b/target/nextflow/bcl_convert/.config.vsh.yaml
@@ -418,7 +418,7 @@ build_info:
   output: "target/nextflow/bcl_convert"
   executable: "target/nextflow/bcl_convert/main.nf"
   viash_version: "0.9.0-RC6"
-  git_commit: "1bbebbb5cb1e1abdefa478488aaa240909e54316"
+  git_commit: "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
   git_remote: "https://github.com/viash-hub/biobox"
 package_config:
   name: "biobox"
diff --git a/target/nextflow/bcl_convert/main.nf b/target/nextflow/bcl_convert/main.nf
index d218c07e..281c9079 100644
--- a/target/nextflow/bcl_convert/main.nf
+++ b/target/nextflow/bcl_convert/main.nf
@@ -3303,7 +3303,7 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/bcl_convert",
     "viash_version" : "0.9.0-RC6",
-    "git_commit" : "1bbebbb5cb1e1abdefa478488aaa240909e54316",
+    "git_commit" : "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e",
     "git_remote" : "https://github.com/viash-hub/biobox"
   },
   "package_config" : {
diff --git a/target/nextflow/bd_rhapsody/bd_rhapsody_make_reference/.config.vsh.yaml b/target/nextflow/bd_rhapsody/bd_rhapsody_make_reference/.config.vsh.yaml
index 6533b501..c2e436f0 100644
--- a/target/nextflow/bd_rhapsody/bd_rhapsody_make_reference/.config.vsh.yaml
+++ b/target/nextflow/bd_rhapsody/bd_rhapsody_make_reference/.config.vsh.yaml
@@ -270,7 +270,7 @@ build_info:
   output: "target/nextflow/bd_rhapsody/bd_rhapsody_make_reference"
   executable: "target/nextflow/bd_rhapsody/bd_rhapsody_make_reference/main.nf"
   viash_version: "0.9.0-RC6"
-  git_commit: "1bbebbb5cb1e1abdefa478488aaa240909e54316"
+  git_commit: "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
   git_remote: "https://github.com/viash-hub/biobox"
 package_config:
   name: "biobox"
diff --git a/target/nextflow/bd_rhapsody/bd_rhapsody_make_reference/main.nf b/target/nextflow/bd_rhapsody/bd_rhapsody_make_reference/main.nf
index 060d833c..bd2a8a82 100644
--- a/target/nextflow/bd_rhapsody/bd_rhapsody_make_reference/main.nf
+++ b/target/nextflow/bd_rhapsody/bd_rhapsody_make_reference/main.nf
@@ -3116,7 +3116,7 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/bd_rhapsody/bd_rhapsody_make_reference",
     "viash_version" : "0.9.0-RC6",
-    "git_commit" : "1bbebbb5cb1e1abdefa478488aaa240909e54316",
+    "git_commit" : "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e",
     "git_remote" : "https://github.com/viash-hub/biobox"
   },
   "package_config" : {
diff --git a/target/nextflow/bedtools/bedtools_bamtofastq/.config.vsh.yaml b/target/nextflow/bedtools/bedtools_bamtofastq/.config.vsh.yaml
index 5ec90dee..e991cd5f 100644
--- a/target/nextflow/bedtools/bedtools_bamtofastq/.config.vsh.yaml
+++ b/target/nextflow/bedtools/bedtools_bamtofastq/.config.vsh.yaml
@@ -187,7 +187,7 @@ build_info:
   output: "target/nextflow/bedtools/bedtools_bamtofastq"
   executable: "target/nextflow/bedtools/bedtools_bamtofastq/main.nf"
   viash_version: "0.9.0-RC6"
-  git_commit: "1bbebbb5cb1e1abdefa478488aaa240909e54316"
+  git_commit: "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
   git_remote: "https://github.com/viash-hub/biobox"
 package_config:
   name: "biobox"
diff --git a/target/nextflow/bedtools/bedtools_bamtofastq/main.nf b/target/nextflow/bedtools/bedtools_bamtofastq/main.nf
index d4219760..9d75ac2b 100644
--- a/target/nextflow/bedtools/bedtools_bamtofastq/main.nf
+++ b/target/nextflow/bedtools/bedtools_bamtofastq/main.nf
@@ -3024,7 +3024,7 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/bedtools/bedtools_bamtofastq",
     "viash_version" : "0.9.0-RC6",
-    "git_commit" : "1bbebbb5cb1e1abdefa478488aaa240909e54316",
+    "git_commit" : "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e",
     "git_remote" : "https://github.com/viash-hub/biobox"
   },
   "package_config" : {
diff --git a/target/nextflow/bedtools/bedtools_bedtobam/.config.vsh.yaml b/target/nextflow/bedtools/bedtools_bedtobam/.config.vsh.yaml
index e9038d37..2017821f 100644
--- a/target/nextflow/bedtools/bedtools_bedtobam/.config.vsh.yaml
+++ b/target/nextflow/bedtools/bedtools_bedtobam/.config.vsh.yaml
@@ -214,7 +214,7 @@ build_info:
   output: "target/nextflow/bedtools/bedtools_bedtobam"
   executable: "target/nextflow/bedtools/bedtools_bedtobam/main.nf"
   viash_version: "0.9.0-RC6"
-  git_commit: "1bbebbb5cb1e1abdefa478488aaa240909e54316"
+  git_commit: "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
   git_remote: "https://github.com/viash-hub/biobox"
 package_config:
   name: "biobox"
diff --git a/target/nextflow/bedtools/bedtools_bedtobam/main.nf b/target/nextflow/bedtools/bedtools_bedtobam/main.nf
index 0d991313..f6fcb462 100644
--- a/target/nextflow/bedtools/bedtools_bedtobam/main.nf
+++ b/target/nextflow/bedtools/bedtools_bedtobam/main.nf
@@ -3057,7 +3057,7 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/bedtools/bedtools_bedtobam",
     "viash_version" : "0.9.0-RC6",
-    "git_commit" : "1bbebbb5cb1e1abdefa478488aaa240909e54316",
+    "git_commit" : "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e",
     "git_remote" : "https://github.com/viash-hub/biobox"
   },
   "package_config" : {
diff --git a/target/nextflow/bedtools/bedtools_getfasta/.config.vsh.yaml b/target/nextflow/bedtools/bedtools_getfasta/.config.vsh.yaml
index 10287455..f6f98f85 100644
--- a/target/nextflow/bedtools/bedtools_getfasta/.config.vsh.yaml
+++ b/target/nextflow/bedtools/bedtools_getfasta/.config.vsh.yaml
@@ -232,7 +232,7 @@ build_info:
   output: "target/nextflow/bedtools/bedtools_getfasta"
   executable: "target/nextflow/bedtools/bedtools_getfasta/main.nf"
   viash_version: "0.9.0-RC6"
-  git_commit: "1bbebbb5cb1e1abdefa478488aaa240909e54316"
+  git_commit: "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
   git_remote: "https://github.com/viash-hub/biobox"
 package_config:
   name: "biobox"
diff --git a/target/nextflow/bedtools/bedtools_getfasta/main.nf b/target/nextflow/bedtools/bedtools_getfasta/main.nf
index f9f7ab1f..44f5d684 100644
--- a/target/nextflow/bedtools/bedtools_getfasta/main.nf
+++ b/target/nextflow/bedtools/bedtools_getfasta/main.nf
@@ -3060,7 +3060,7 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/bedtools/bedtools_getfasta",
     "viash_version" : "0.9.0-RC6",
-    "git_commit" : "1bbebbb5cb1e1abdefa478488aaa240909e54316",
+    "git_commit" : "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e",
     "git_remote" : "https://github.com/viash-hub/biobox"
   },
   "package_config" : {
diff --git a/target/nextflow/bedtools/bedtools_intersect/.config.vsh.yaml b/target/nextflow/bedtools/bedtools_intersect/.config.vsh.yaml
index df3d9caa..f0c936bd 100644
--- a/target/nextflow/bedtools/bedtools_intersect/.config.vsh.yaml
+++ b/target/nextflow/bedtools/bedtools_intersect/.config.vsh.yaml
@@ -410,7 +410,7 @@ build_info:
   output: "target/nextflow/bedtools/bedtools_intersect"
   executable: "target/nextflow/bedtools/bedtools_intersect/main.nf"
   viash_version: "0.9.0-RC6"
-  git_commit: "1bbebbb5cb1e1abdefa478488aaa240909e54316"
+  git_commit: "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
   git_remote: "https://github.com/viash-hub/biobox"
 package_config:
   name: "biobox"
diff --git a/target/nextflow/bedtools/bedtools_intersect/main.nf b/target/nextflow/bedtools/bedtools_intersect/main.nf
index 2f225f3b..128b24cd 100644
--- a/target/nextflow/bedtools/bedtools_intersect/main.nf
+++ b/target/nextflow/bedtools/bedtools_intersect/main.nf
@@ -3256,7 +3256,7 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/bedtools/bedtools_intersect",
     "viash_version" : "0.9.0-RC6",
-    "git_commit" : "1bbebbb5cb1e1abdefa478488aaa240909e54316",
+    "git_commit" : "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e",
     "git_remote" : "https://github.com/viash-hub/biobox"
   },
   "package_config" : {
diff --git a/target/nextflow/bedtools/bedtools_sort/.config.vsh.yaml b/target/nextflow/bedtools/bedtools_sort/.config.vsh.yaml
index b1ef5302..9c57d8f9 100644
--- a/target/nextflow/bedtools/bedtools_sort/.config.vsh.yaml
+++ b/target/nextflow/bedtools/bedtools_sort/.config.vsh.yaml
@@ -222,7 +222,7 @@ build_info:
   output: "target/nextflow/bedtools/bedtools_sort"
   executable: "target/nextflow/bedtools/bedtools_sort/main.nf"
   viash_version: "0.9.0-RC6"
-  git_commit: "1bbebbb5cb1e1abdefa478488aaa240909e54316"
+  git_commit: "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
   git_remote: "https://github.com/viash-hub/biobox"
 package_config:
   name: "biobox"
diff --git a/target/nextflow/bedtools/bedtools_sort/main.nf b/target/nextflow/bedtools/bedtools_sort/main.nf
index cc059c53..6b1a1b25 100644
--- a/target/nextflow/bedtools/bedtools_sort/main.nf
+++ b/target/nextflow/bedtools/bedtools_sort/main.nf
@@ -3066,7 +3066,7 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/bedtools/bedtools_sort",
     "viash_version" : "0.9.0-RC6",
-    "git_commit" : "1bbebbb5cb1e1abdefa478488aaa240909e54316",
+    "git_commit" : "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e",
     "git_remote" : "https://github.com/viash-hub/biobox"
   },
   "package_config" : {
diff --git a/target/nextflow/busco/busco_download_datasets/.config.vsh.yaml b/target/nextflow/busco/busco_download_datasets/.config.vsh.yaml
index 1d473e65..d781cff8 100644
--- a/target/nextflow/busco/busco_download_datasets/.config.vsh.yaml
+++ b/target/nextflow/busco/busco_download_datasets/.config.vsh.yaml
@@ -158,7 +158,7 @@ build_info:
   output: "target/nextflow/busco/busco_download_datasets"
   executable: "target/nextflow/busco/busco_download_datasets/main.nf"
   viash_version: "0.9.0-RC6"
-  git_commit: "1bbebbb5cb1e1abdefa478488aaa240909e54316"
+  git_commit: "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
   git_remote: "https://github.com/viash-hub/biobox"
 package_config:
   name: "biobox"
diff --git a/target/nextflow/busco/busco_download_datasets/main.nf b/target/nextflow/busco/busco_download_datasets/main.nf
index 0da9d30a..826ffb8d 100644
--- a/target/nextflow/busco/busco_download_datasets/main.nf
+++ b/target/nextflow/busco/busco_download_datasets/main.nf
@@ -2985,7 +2985,7 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/busco/busco_download_datasets",
     "viash_version" : "0.9.0-RC6",
-    "git_commit" : "1bbebbb5cb1e1abdefa478488aaa240909e54316",
+    "git_commit" : "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e",
     "git_remote" : "https://github.com/viash-hub/biobox"
   },
   "package_config" : {
diff --git a/target/nextflow/busco/busco_list_datasets/.config.vsh.yaml b/target/nextflow/busco/busco_list_datasets/.config.vsh.yaml
index da48d785..9d2c55b8 100644
--- a/target/nextflow/busco/busco_list_datasets/.config.vsh.yaml
+++ b/target/nextflow/busco/busco_list_datasets/.config.vsh.yaml
@@ -145,7 +145,7 @@ build_info:
   output: "target/nextflow/busco/busco_list_datasets"
   executable: "target/nextflow/busco/busco_list_datasets/main.nf"
   viash_version: "0.9.0-RC6"
-  git_commit: "1bbebbb5cb1e1abdefa478488aaa240909e54316"
+  git_commit: "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
   git_remote: "https://github.com/viash-hub/biobox"
 package_config:
   name: "biobox"
diff --git a/target/nextflow/busco/busco_list_datasets/main.nf b/target/nextflow/busco/busco_list_datasets/main.nf
index ecc96f14..4cf56aed 100644
--- a/target/nextflow/busco/busco_list_datasets/main.nf
+++ b/target/nextflow/busco/busco_list_datasets/main.nf
@@ -2971,7 +2971,7 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/busco/busco_list_datasets",
     "viash_version" : "0.9.0-RC6",
-    "git_commit" : "1bbebbb5cb1e1abdefa478488aaa240909e54316",
+    "git_commit" : "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e",
     "git_remote" : "https://github.com/viash-hub/biobox"
   },
   "package_config" : {
diff --git a/target/nextflow/busco/busco_run/.config.vsh.yaml b/target/nextflow/busco/busco_run/.config.vsh.yaml
index 7c99a1e3..9b89ad2d 100644
--- a/target/nextflow/busco/busco_run/.config.vsh.yaml
+++ b/target/nextflow/busco/busco_run/.config.vsh.yaml
@@ -423,7 +423,7 @@ build_info:
   output: "target/nextflow/busco/busco_run"
   executable: "target/nextflow/busco/busco_run/main.nf"
   viash_version: "0.9.0-RC6"
-  git_commit: "1bbebbb5cb1e1abdefa478488aaa240909e54316"
+  git_commit: "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
   git_remote: "https://github.com/viash-hub/biobox"
 package_config:
   name: "biobox"
diff --git a/target/nextflow/busco/busco_run/main.nf b/target/nextflow/busco/busco_run/main.nf
index dc5c2b97..d6e59496 100644
--- a/target/nextflow/busco/busco_run/main.nf
+++ b/target/nextflow/busco/busco_run/main.nf
@@ -3283,7 +3283,7 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/busco/busco_run",
     "viash_version" : "0.9.0-RC6",
-    "git_commit" : "1bbebbb5cb1e1abdefa478488aaa240909e54316",
+    "git_commit" : "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e",
     "git_remote" : "https://github.com/viash-hub/biobox"
   },
   "package_config" : {
diff --git a/target/nextflow/cutadapt/.config.vsh.yaml b/target/nextflow/cutadapt/.config.vsh.yaml
index 5d2e9aff..5720766c 100644
--- a/target/nextflow/cutadapt/.config.vsh.yaml
+++ b/target/nextflow/cutadapt/.config.vsh.yaml
@@ -740,7 +740,7 @@ build_info:
   output: "target/nextflow/cutadapt"
   executable: "target/nextflow/cutadapt/main.nf"
   viash_version: "0.9.0-RC6"
-  git_commit: "1bbebbb5cb1e1abdefa478488aaa240909e54316"
+  git_commit: "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
   git_remote: "https://github.com/viash-hub/biobox"
 package_config:
   name: "biobox"
diff --git a/target/nextflow/cutadapt/main.nf b/target/nextflow/cutadapt/main.nf
index c9aed4b8..596d06ea 100644
--- a/target/nextflow/cutadapt/main.nf
+++ b/target/nextflow/cutadapt/main.nf
@@ -3593,7 +3593,7 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/cutadapt",
     "viash_version" : "0.9.0-RC6",
-    "git_commit" : "1bbebbb5cb1e1abdefa478488aaa240909e54316",
+    "git_commit" : "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e",
     "git_remote" : "https://github.com/viash-hub/biobox"
   },
   "package_config" : {
diff --git a/target/nextflow/falco/.config.vsh.yaml b/target/nextflow/falco/.config.vsh.yaml
index fc05da6c..9fcca91b 100644
--- a/target/nextflow/falco/.config.vsh.yaml
+++ b/target/nextflow/falco/.config.vsh.yaml
@@ -317,7 +317,7 @@ build_info:
   output: "target/nextflow/falco"
   executable: "target/nextflow/falco/main.nf"
   viash_version: "0.9.0-RC6"
-  git_commit: "1bbebbb5cb1e1abdefa478488aaa240909e54316"
+  git_commit: "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
   git_remote: "https://github.com/viash-hub/biobox"
 package_config:
   name: "biobox"
diff --git a/target/nextflow/falco/main.nf b/target/nextflow/falco/main.nf
index 48b532f8..279be84c 100644
--- a/target/nextflow/falco/main.nf
+++ b/target/nextflow/falco/main.nf
@@ -3144,7 +3144,7 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/falco",
     "viash_version" : "0.9.0-RC6",
-    "git_commit" : "1bbebbb5cb1e1abdefa478488aaa240909e54316",
+    "git_commit" : "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e",
     "git_remote" : "https://github.com/viash-hub/biobox"
   },
   "package_config" : {
diff --git a/target/nextflow/fastp/.config.vsh.yaml b/target/nextflow/fastp/.config.vsh.yaml
index 9ba909c1..2b51fc5d 100644
--- a/target/nextflow/fastp/.config.vsh.yaml
+++ b/target/nextflow/fastp/.config.vsh.yaml
@@ -1083,7 +1083,7 @@ build_info:
   output: "target/nextflow/fastp"
   executable: "target/nextflow/fastp/main.nf"
   viash_version: "0.9.0-RC6"
-  git_commit: "1bbebbb5cb1e1abdefa478488aaa240909e54316"
+  git_commit: "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
   git_remote: "https://github.com/viash-hub/biobox"
 package_config:
   name: "biobox"
diff --git a/target/nextflow/fastp/main.nf b/target/nextflow/fastp/main.nf
index 16a3e6da..65b1fbde 100644
--- a/target/nextflow/fastp/main.nf
+++ b/target/nextflow/fastp/main.nf
@@ -3997,7 +3997,7 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/fastp",
     "viash_version" : "0.9.0-RC6",
-    "git_commit" : "1bbebbb5cb1e1abdefa478488aaa240909e54316",
+    "git_commit" : "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e",
     "git_remote" : "https://github.com/viash-hub/biobox"
   },
   "package_config" : {
diff --git a/target/nextflow/featurecounts/.config.vsh.yaml b/target/nextflow/featurecounts/.config.vsh.yaml
index a1520a52..94cf136e 100644
--- a/target/nextflow/featurecounts/.config.vsh.yaml
+++ b/target/nextflow/featurecounts/.config.vsh.yaml
@@ -645,7 +645,7 @@ build_info:
   output: "target/nextflow/featurecounts"
   executable: "target/nextflow/featurecounts/main.nf"
   viash_version: "0.9.0-RC6"
-  git_commit: "1bbebbb5cb1e1abdefa478488aaa240909e54316"
+  git_commit: "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
   git_remote: "https://github.com/viash-hub/biobox"
 package_config:
   name: "biobox"
diff --git a/target/nextflow/featurecounts/main.nf b/target/nextflow/featurecounts/main.nf
index 93bed837..488cc02e 100644
--- a/target/nextflow/featurecounts/main.nf
+++ b/target/nextflow/featurecounts/main.nf
@@ -3523,7 +3523,7 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/featurecounts",
     "viash_version" : "0.9.0-RC6",
-    "git_commit" : "1bbebbb5cb1e1abdefa478488aaa240909e54316",
+    "git_commit" : "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e",
     "git_remote" : "https://github.com/viash-hub/biobox"
   },
   "package_config" : {
diff --git a/target/nextflow/gffread/.config.vsh.yaml b/target/nextflow/gffread/.config.vsh.yaml
index ebbf3fc5..c8187142 100644
--- a/target/nextflow/gffread/.config.vsh.yaml
+++ b/target/nextflow/gffread/.config.vsh.yaml
@@ -685,7 +685,7 @@ build_info:
   output: "target/nextflow/gffread"
   executable: "target/nextflow/gffread/main.nf"
   viash_version: "0.9.0-RC6"
-  git_commit: "1bbebbb5cb1e1abdefa478488aaa240909e54316"
+  git_commit: "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
   git_remote: "https://github.com/viash-hub/biobox"
 package_config:
   name: "biobox"
diff --git a/target/nextflow/gffread/main.nf b/target/nextflow/gffread/main.nf
index fdeb60c0..84c082fa 100644
--- a/target/nextflow/gffread/main.nf
+++ b/target/nextflow/gffread/main.nf
@@ -3580,7 +3580,7 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/gffread",
     "viash_version" : "0.9.0-RC6",
-    "git_commit" : "1bbebbb5cb1e1abdefa478488aaa240909e54316",
+    "git_commit" : "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e",
     "git_remote" : "https://github.com/viash-hub/biobox"
   },
   "package_config" : {
diff --git a/target/nextflow/lofreq/lofreq_call/.config.vsh.yaml b/target/nextflow/lofreq/lofreq_call/.config.vsh.yaml
index 187a3f29..68e1097d 100644
--- a/target/nextflow/lofreq/lofreq_call/.config.vsh.yaml
+++ b/target/nextflow/lofreq/lofreq_call/.config.vsh.yaml
@@ -507,7 +507,7 @@ build_info:
   output: "target/nextflow/lofreq/lofreq_call"
   executable: "target/nextflow/lofreq/lofreq_call/main.nf"
   viash_version: "0.9.0-RC6"
-  git_commit: "1bbebbb5cb1e1abdefa478488aaa240909e54316"
+  git_commit: "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
   git_remote: "https://github.com/viash-hub/biobox"
 package_config:
   name: "biobox"
diff --git a/target/nextflow/lofreq/lofreq_call/main.nf b/target/nextflow/lofreq/lofreq_call/main.nf
index 6154db08..adec0e2a 100644
--- a/target/nextflow/lofreq/lofreq_call/main.nf
+++ b/target/nextflow/lofreq/lofreq_call/main.nf
@@ -3388,7 +3388,7 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/lofreq/lofreq_call",
     "viash_version" : "0.9.0-RC6",
-    "git_commit" : "1bbebbb5cb1e1abdefa478488aaa240909e54316",
+    "git_commit" : "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e",
     "git_remote" : "https://github.com/viash-hub/biobox"
   },
   "package_config" : {
diff --git a/target/nextflow/lofreq/lofreq_indelqual/.config.vsh.yaml b/target/nextflow/lofreq/lofreq_indelqual/.config.vsh.yaml
index b2f67236..ff948e0b 100644
--- a/target/nextflow/lofreq/lofreq_indelqual/.config.vsh.yaml
+++ b/target/nextflow/lofreq/lofreq_indelqual/.config.vsh.yaml
@@ -215,7 +215,7 @@ build_info:
   output: "target/nextflow/lofreq/lofreq_indelqual"
   executable: "target/nextflow/lofreq/lofreq_indelqual/main.nf"
   viash_version: "0.9.0-RC6"
-  git_commit: "1bbebbb5cb1e1abdefa478488aaa240909e54316"
+  git_commit: "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
   git_remote: "https://github.com/viash-hub/biobox"
 package_config:
   name: "biobox"
diff --git a/target/nextflow/lofreq/lofreq_indelqual/main.nf b/target/nextflow/lofreq/lofreq_indelqual/main.nf
index 61f118fb..40682c3c 100644
--- a/target/nextflow/lofreq/lofreq_indelqual/main.nf
+++ b/target/nextflow/lofreq/lofreq_indelqual/main.nf
@@ -3051,7 +3051,7 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/lofreq/lofreq_indelqual",
     "viash_version" : "0.9.0-RC6",
-    "git_commit" : "1bbebbb5cb1e1abdefa478488aaa240909e54316",
+    "git_commit" : "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e",
     "git_remote" : "https://github.com/viash-hub/biobox"
   },
   "package_config" : {
diff --git a/target/nextflow/multiqc/.config.vsh.yaml b/target/nextflow/multiqc/.config.vsh.yaml
index 2d0a971b..8a75bc2d 100644
--- a/target/nextflow/multiqc/.config.vsh.yaml
+++ b/target/nextflow/multiqc/.config.vsh.yaml
@@ -456,7 +456,7 @@ build_info:
   output: "target/nextflow/multiqc"
   executable: "target/nextflow/multiqc/main.nf"
   viash_version: "0.9.0-RC6"
-  git_commit: "1bbebbb5cb1e1abdefa478488aaa240909e54316"
+  git_commit: "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
   git_remote: "https://github.com/viash-hub/biobox"
 package_config:
   name: "biobox"
diff --git a/target/nextflow/multiqc/main.nf b/target/nextflow/multiqc/main.nf
index 120db7b2..612220a4 100644
--- a/target/nextflow/multiqc/main.nf
+++ b/target/nextflow/multiqc/main.nf
@@ -3340,7 +3340,7 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/multiqc",
     "viash_version" : "0.9.0-RC6",
-    "git_commit" : "1bbebbb5cb1e1abdefa478488aaa240909e54316",
+    "git_commit" : "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e",
     "git_remote" : "https://github.com/viash-hub/biobox"
   },
   "package_config" : {
diff --git a/target/nextflow/pear/.config.vsh.yaml b/target/nextflow/pear/.config.vsh.yaml
index 31855eba..06eea9ae 100644
--- a/target/nextflow/pear/.config.vsh.yaml
+++ b/target/nextflow/pear/.config.vsh.yaml
@@ -398,7 +398,7 @@ build_info:
   output: "target/nextflow/pear"
   executable: "target/nextflow/pear/main.nf"
   viash_version: "0.9.0-RC6"
-  git_commit: "1bbebbb5cb1e1abdefa478488aaa240909e54316"
+  git_commit: "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
   git_remote: "https://github.com/viash-hub/biobox"
 package_config:
   name: "biobox"
diff --git a/target/nextflow/pear/main.nf b/target/nextflow/pear/main.nf
index 7e44349e..c6c769b4 100644
--- a/target/nextflow/pear/main.nf
+++ b/target/nextflow/pear/main.nf
@@ -3233,7 +3233,7 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/pear",
     "viash_version" : "0.9.0-RC6",
-    "git_commit" : "1bbebbb5cb1e1abdefa478488aaa240909e54316",
+    "git_commit" : "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e",
     "git_remote" : "https://github.com/viash-hub/biobox"
   },
   "package_config" : {
diff --git a/target/nextflow/qualimap/qualimap_rnaseq/.config.vsh.yaml b/target/nextflow/qualimap/.config.vsh.yaml
similarity index 97%
rename from target/nextflow/qualimap/qualimap_rnaseq/.config.vsh.yaml
rename to target/nextflow/qualimap/.config.vsh.yaml
index 394eb6f5..bfe73661 100644
--- a/target/nextflow/qualimap/qualimap_rnaseq/.config.vsh.yaml
+++ b/target/nextflow/qualimap/.config.vsh.yaml
@@ -1,5 +1,4 @@
-name: "qualimap_rnaseq"
-namespace: "qualimap"
+name: "qualimap"
 version: "qualimap"
 authors:
 - name: "Dorien Roosen"
@@ -279,10 +278,10 @@ build_info:
   config: "src/qualimap/qualimap_rnaseq/config.vsh.yaml"
   runner: "nextflow"
   engine: "docker|native"
-  output: "target/nextflow/qualimap/qualimap_rnaseq"
-  executable: "target/nextflow/qualimap/qualimap_rnaseq/main.nf"
+  output: "target/nextflow/qualimap"
+  executable: "target/nextflow/qualimap/main.nf"
   viash_version: "0.9.0-RC6"
-  git_commit: "1bbebbb5cb1e1abdefa478488aaa240909e54316"
+  git_commit: "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
   git_remote: "https://github.com/viash-hub/biobox"
 package_config:
   name: "biobox"
diff --git a/target/nextflow/qualimap/qualimap_rnaseq/main.nf b/target/nextflow/qualimap/main.nf
similarity index 99%
rename from target/nextflow/qualimap/qualimap_rnaseq/main.nf
rename to target/nextflow/qualimap/main.nf
index 95eb4dc9..43aa34e3 100644
--- a/target/nextflow/qualimap/qualimap_rnaseq/main.nf
+++ b/target/nextflow/qualimap/main.nf
@@ -1,4 +1,4 @@
-// qualimap_rnaseq qualimap
+// qualimap qualimap
 // 
 // This wrapper script is auto-generated by viash 0.9.0-RC6 and is thus a
 // derivative work thereof. This software comes with ABSOLUTELY NO WARRANTY from
@@ -2781,8 +2781,7 @@ nextflow.enable.dsl=2
 meta = [
   "resources_dir": moduleDir.toRealPath().normalize(),
   "config": processConfig(readJsonBlob('''{
-  "name" : "qualimap_rnaseq",
-  "namespace" : "qualimap",
+  "name" : "qualimap",
   "version" : "qualimap",
   "authors" : [
     {
@@ -3123,9 +3122,9 @@ meta = [
     "config" : "/workdir/root/repo/src/qualimap/qualimap_rnaseq/config.vsh.yaml",
     "runner" : "nextflow",
     "engine" : "docker|native",
-    "output" : "target/nextflow/qualimap/qualimap_rnaseq",
+    "output" : "target/nextflow/qualimap",
     "viash_version" : "0.9.0-RC6",
-    "git_commit" : "1bbebbb5cb1e1abdefa478488aaa240909e54316",
+    "git_commit" : "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e",
     "git_remote" : "https://github.com/viash-hub/biobox"
   },
   "package_config" : {
@@ -3604,7 +3603,7 @@ meta["defaults"] = [
   directives: readJsonBlob('''{
   "container" : {
     "registry" : "images.viash-hub.com",
-    "image" : "vsh/biobox/qualimap/qualimap_rnaseq",
+    "image" : "vsh/biobox/qualimap",
     "tag" : "qualimap"
   },
   "tag" : "$id"
diff --git a/target/nextflow/qualimap/qualimap_rnaseq/nextflow.config b/target/nextflow/qualimap/nextflow.config
similarity index 99%
rename from target/nextflow/qualimap/qualimap_rnaseq/nextflow.config
rename to target/nextflow/qualimap/nextflow.config
index e3085afe..3d07fc6b 100644
--- a/target/nextflow/qualimap/qualimap_rnaseq/nextflow.config
+++ b/target/nextflow/qualimap/nextflow.config
@@ -1,5 +1,5 @@
 manifest {
-  name = 'qualimap/qualimap_rnaseq'
+  name = 'qualimap'
   mainScript = 'main.nf'
   nextflowVersion = '!>=20.12.1-edge'
   version = 'qualimap'
diff --git a/target/nextflow/qualimap/qualimap_rnaseq/nextflow_schema.json b/target/nextflow/qualimap/nextflow_schema.json
similarity index 99%
rename from target/nextflow/qualimap/qualimap_rnaseq/nextflow_schema.json
rename to target/nextflow/qualimap/nextflow_schema.json
index aaf2e054..2c7afc31 100644
--- a/target/nextflow/qualimap/qualimap_rnaseq/nextflow_schema.json
+++ b/target/nextflow/qualimap/nextflow_schema.json
@@ -1,6 +1,6 @@
 {
 "$schema": "http://json-schema.org/draft-07/schema",
-"title": "qualimap_rnaseq",
+"title": "qualimap",
 "description": "Qualimap RNA-seq QC reports quality control metrics and bias estimations \nwhich are specific for whole transcriptome sequencing, including reads genomic \norigin, junction analysis, transcript coverage and 5\u2019-3\u2019 bias computation.\n",
 "type": "object",
 "definitions": {
diff --git a/target/nextflow/salmon/salmon_index/.config.vsh.yaml b/target/nextflow/salmon/salmon_index/.config.vsh.yaml
index a20c3871..2f9b9a3d 100644
--- a/target/nextflow/salmon/salmon_index/.config.vsh.yaml
+++ b/target/nextflow/salmon/salmon_index/.config.vsh.yaml
@@ -277,7 +277,7 @@ build_info:
   output: "target/nextflow/salmon/salmon_index"
   executable: "target/nextflow/salmon/salmon_index/main.nf"
   viash_version: "0.9.0-RC6"
-  git_commit: "1bbebbb5cb1e1abdefa478488aaa240909e54316"
+  git_commit: "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
   git_remote: "https://github.com/viash-hub/biobox"
 package_config:
   name: "biobox"
diff --git a/target/nextflow/salmon/salmon_index/main.nf b/target/nextflow/salmon/salmon_index/main.nf
index a363cad6..3f4ccffb 100644
--- a/target/nextflow/salmon/salmon_index/main.nf
+++ b/target/nextflow/salmon/salmon_index/main.nf
@@ -3103,7 +3103,7 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/salmon/salmon_index",
     "viash_version" : "0.9.0-RC6",
-    "git_commit" : "1bbebbb5cb1e1abdefa478488aaa240909e54316",
+    "git_commit" : "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e",
     "git_remote" : "https://github.com/viash-hub/biobox"
   },
   "package_config" : {
diff --git a/target/nextflow/salmon/salmon_quant/.config.vsh.yaml b/target/nextflow/salmon/salmon_quant/.config.vsh.yaml
index 2aa3e838..e5c1d818 100644
--- a/target/nextflow/salmon/salmon_quant/.config.vsh.yaml
+++ b/target/nextflow/salmon/salmon_quant/.config.vsh.yaml
@@ -1173,7 +1173,7 @@ build_info:
   output: "target/nextflow/salmon/salmon_quant"
   executable: "target/nextflow/salmon/salmon_quant/main.nf"
   viash_version: "0.9.0-RC6"
-  git_commit: "1bbebbb5cb1e1abdefa478488aaa240909e54316"
+  git_commit: "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
   git_remote: "https://github.com/viash-hub/biobox"
 package_config:
   name: "biobox"
diff --git a/target/nextflow/salmon/salmon_quant/main.nf b/target/nextflow/salmon/salmon_quant/main.nf
index 6aa02dbe..3eacfa8c 100644
--- a/target/nextflow/salmon/salmon_quant/main.nf
+++ b/target/nextflow/salmon/salmon_quant/main.nf
@@ -3938,7 +3938,7 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/salmon/salmon_quant",
     "viash_version" : "0.9.0-RC6",
-    "git_commit" : "1bbebbb5cb1e1abdefa478488aaa240909e54316",
+    "git_commit" : "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e",
     "git_remote" : "https://github.com/viash-hub/biobox"
   },
   "package_config" : {
diff --git a/target/nextflow/samtools/samtools_collate/.config.vsh.yaml b/target/nextflow/samtools/samtools_collate/.config.vsh.yaml
index 7f5a362a..1ff4d307 100644
--- a/target/nextflow/samtools/samtools_collate/.config.vsh.yaml
+++ b/target/nextflow/samtools/samtools_collate/.config.vsh.yaml
@@ -264,7 +264,7 @@ build_info:
   output: "target/nextflow/samtools/samtools_collate"
   executable: "target/nextflow/samtools/samtools_collate/main.nf"
   viash_version: "0.9.0-RC6"
-  git_commit: "1bbebbb5cb1e1abdefa478488aaa240909e54316"
+  git_commit: "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
   git_remote: "https://github.com/viash-hub/biobox"
 package_config:
   name: "biobox"
diff --git a/target/nextflow/samtools/samtools_collate/main.nf b/target/nextflow/samtools/samtools_collate/main.nf
index 86022cff..10f43299 100644
--- a/target/nextflow/samtools/samtools_collate/main.nf
+++ b/target/nextflow/samtools/samtools_collate/main.nf
@@ -3114,7 +3114,7 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/samtools/samtools_collate",
     "viash_version" : "0.9.0-RC6",
-    "git_commit" : "1bbebbb5cb1e1abdefa478488aaa240909e54316",
+    "git_commit" : "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e",
     "git_remote" : "https://github.com/viash-hub/biobox"
   },
   "package_config" : {
diff --git a/target/nextflow/samtools/samtools_faidx/.config.vsh.yaml b/target/nextflow/samtools/samtools_faidx/.config.vsh.yaml
index 18f36865..2eb22415 100644
--- a/target/nextflow/samtools/samtools_faidx/.config.vsh.yaml
+++ b/target/nextflow/samtools/samtools_faidx/.config.vsh.yaml
@@ -243,7 +243,7 @@ build_info:
   output: "target/nextflow/samtools/samtools_faidx"
   executable: "target/nextflow/samtools/samtools_faidx/main.nf"
   viash_version: "0.9.0-RC6"
-  git_commit: "1bbebbb5cb1e1abdefa478488aaa240909e54316"
+  git_commit: "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
   git_remote: "https://github.com/viash-hub/biobox"
 package_config:
   name: "biobox"
diff --git a/target/nextflow/samtools/samtools_faidx/main.nf b/target/nextflow/samtools/samtools_faidx/main.nf
index 3c67a7b5..a42a3257 100644
--- a/target/nextflow/samtools/samtools_faidx/main.nf
+++ b/target/nextflow/samtools/samtools_faidx/main.nf
@@ -3086,7 +3086,7 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/samtools/samtools_faidx",
     "viash_version" : "0.9.0-RC6",
-    "git_commit" : "1bbebbb5cb1e1abdefa478488aaa240909e54316",
+    "git_commit" : "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e",
     "git_remote" : "https://github.com/viash-hub/biobox"
   },
   "package_config" : {
diff --git a/target/nextflow/samtools/samtools_fasta/.config.vsh.yaml b/target/nextflow/samtools/samtools_fasta/.config.vsh.yaml
index 93a9df4d..0e2dd1fc 100644
--- a/target/nextflow/samtools/samtools_fasta/.config.vsh.yaml
+++ b/target/nextflow/samtools/samtools_fasta/.config.vsh.yaml
@@ -433,7 +433,7 @@ build_info:
   output: "target/nextflow/samtools/samtools_fasta"
   executable: "target/nextflow/samtools/samtools_fasta/main.nf"
   viash_version: "0.9.0-RC6"
-  git_commit: "1bbebbb5cb1e1abdefa478488aaa240909e54316"
+  git_commit: "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
   git_remote: "https://github.com/viash-hub/biobox"
 package_config:
   name: "biobox"
diff --git a/target/nextflow/samtools/samtools_fasta/main.nf b/target/nextflow/samtools/samtools_fasta/main.nf
index 241f8c7c..761c69c4 100644
--- a/target/nextflow/samtools/samtools_fasta/main.nf
+++ b/target/nextflow/samtools/samtools_fasta/main.nf
@@ -3278,7 +3278,7 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/samtools/samtools_fasta",
     "viash_version" : "0.9.0-RC6",
-    "git_commit" : "1bbebbb5cb1e1abdefa478488aaa240909e54316",
+    "git_commit" : "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e",
     "git_remote" : "https://github.com/viash-hub/biobox"
   },
   "package_config" : {
diff --git a/target/nextflow/samtools/samtools_fastq/.config.vsh.yaml b/target/nextflow/samtools/samtools_fastq/.config.vsh.yaml
index 94a513f1..76c09189 100644
--- a/target/nextflow/samtools/samtools_fastq/.config.vsh.yaml
+++ b/target/nextflow/samtools/samtools_fastq/.config.vsh.yaml
@@ -433,7 +433,7 @@ build_info:
   output: "target/nextflow/samtools/samtools_fastq"
   executable: "target/nextflow/samtools/samtools_fastq/main.nf"
   viash_version: "0.9.0-RC6"
-  git_commit: "1bbebbb5cb1e1abdefa478488aaa240909e54316"
+  git_commit: "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
   git_remote: "https://github.com/viash-hub/biobox"
 package_config:
   name: "biobox"
diff --git a/target/nextflow/samtools/samtools_fastq/main.nf b/target/nextflow/samtools/samtools_fastq/main.nf
index 89995a5d..2f7ea61c 100644
--- a/target/nextflow/samtools/samtools_fastq/main.nf
+++ b/target/nextflow/samtools/samtools_fastq/main.nf
@@ -3278,7 +3278,7 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/samtools/samtools_fastq",
     "viash_version" : "0.9.0-RC6",
-    "git_commit" : "1bbebbb5cb1e1abdefa478488aaa240909e54316",
+    "git_commit" : "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e",
     "git_remote" : "https://github.com/viash-hub/biobox"
   },
   "package_config" : {
diff --git a/target/nextflow/samtools/samtools_flagstat/.config.vsh.yaml b/target/nextflow/samtools/samtools_flagstat/.config.vsh.yaml
index 87c76968..300456f9 100644
--- a/target/nextflow/samtools/samtools_flagstat/.config.vsh.yaml
+++ b/target/nextflow/samtools/samtools_flagstat/.config.vsh.yaml
@@ -173,7 +173,7 @@ build_info:
   output: "target/nextflow/samtools/samtools_flagstat"
   executable: "target/nextflow/samtools/samtools_flagstat/main.nf"
   viash_version: "0.9.0-RC6"
-  git_commit: "1bbebbb5cb1e1abdefa478488aaa240909e54316"
+  git_commit: "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
   git_remote: "https://github.com/viash-hub/biobox"
 package_config:
   name: "biobox"
diff --git a/target/nextflow/samtools/samtools_flagstat/main.nf b/target/nextflow/samtools/samtools_flagstat/main.nf
index a27635f6..5ac2a34c 100644
--- a/target/nextflow/samtools/samtools_flagstat/main.nf
+++ b/target/nextflow/samtools/samtools_flagstat/main.nf
@@ -3002,7 +3002,7 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/samtools/samtools_flagstat",
     "viash_version" : "0.9.0-RC6",
-    "git_commit" : "1bbebbb5cb1e1abdefa478488aaa240909e54316",
+    "git_commit" : "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e",
     "git_remote" : "https://github.com/viash-hub/biobox"
   },
   "package_config" : {
diff --git a/target/nextflow/samtools/samtools_idxstats/.config.vsh.yaml b/target/nextflow/samtools/samtools_idxstats/.config.vsh.yaml
index ad4a2e8a..2b49e823 100644
--- a/target/nextflow/samtools/samtools_idxstats/.config.vsh.yaml
+++ b/target/nextflow/samtools/samtools_idxstats/.config.vsh.yaml
@@ -183,7 +183,7 @@ build_info:
   output: "target/nextflow/samtools/samtools_idxstats"
   executable: "target/nextflow/samtools/samtools_idxstats/main.nf"
   viash_version: "0.9.0-RC6"
-  git_commit: "1bbebbb5cb1e1abdefa478488aaa240909e54316"
+  git_commit: "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
   git_remote: "https://github.com/viash-hub/biobox"
 package_config:
   name: "biobox"
diff --git a/target/nextflow/samtools/samtools_idxstats/main.nf b/target/nextflow/samtools/samtools_idxstats/main.nf
index cc007ed1..454e65e3 100644
--- a/target/nextflow/samtools/samtools_idxstats/main.nf
+++ b/target/nextflow/samtools/samtools_idxstats/main.nf
@@ -3014,7 +3014,7 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/samtools/samtools_idxstats",
     "viash_version" : "0.9.0-RC6",
-    "git_commit" : "1bbebbb5cb1e1abdefa478488aaa240909e54316",
+    "git_commit" : "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e",
     "git_remote" : "https://github.com/viash-hub/biobox"
   },
   "package_config" : {
diff --git a/target/nextflow/samtools/samtools_index/.config.vsh.yaml b/target/nextflow/samtools/samtools_index/.config.vsh.yaml
index c991b25c..79574a03 100644
--- a/target/nextflow/samtools/samtools_index/.config.vsh.yaml
+++ b/target/nextflow/samtools/samtools_index/.config.vsh.yaml
@@ -189,7 +189,7 @@ build_info:
   output: "target/nextflow/samtools/samtools_index"
   executable: "target/nextflow/samtools/samtools_index/main.nf"
   viash_version: "0.9.0-RC6"
-  git_commit: "1bbebbb5cb1e1abdefa478488aaa240909e54316"
+  git_commit: "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
   git_remote: "https://github.com/viash-hub/biobox"
 package_config:
   name: "biobox"
diff --git a/target/nextflow/samtools/samtools_index/main.nf b/target/nextflow/samtools/samtools_index/main.nf
index af7c11db..14b671fa 100644
--- a/target/nextflow/samtools/samtools_index/main.nf
+++ b/target/nextflow/samtools/samtools_index/main.nf
@@ -3027,7 +3027,7 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/samtools/samtools_index",
     "viash_version" : "0.9.0-RC6",
-    "git_commit" : "1bbebbb5cb1e1abdefa478488aaa240909e54316",
+    "git_commit" : "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e",
     "git_remote" : "https://github.com/viash-hub/biobox"
   },
   "package_config" : {
diff --git a/target/nextflow/samtools/samtools_sort/.config.vsh.yaml b/target/nextflow/samtools/samtools_sort/.config.vsh.yaml
index c37a3d34..e5e58c78 100644
--- a/target/nextflow/samtools/samtools_sort/.config.vsh.yaml
+++ b/target/nextflow/samtools/samtools_sort/.config.vsh.yaml
@@ -332,7 +332,7 @@ build_info:
   output: "target/nextflow/samtools/samtools_sort"
   executable: "target/nextflow/samtools/samtools_sort/main.nf"
   viash_version: "0.9.0-RC6"
-  git_commit: "1bbebbb5cb1e1abdefa478488aaa240909e54316"
+  git_commit: "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
   git_remote: "https://github.com/viash-hub/biobox"
 package_config:
   name: "biobox"
diff --git a/target/nextflow/samtools/samtools_sort/main.nf b/target/nextflow/samtools/samtools_sort/main.nf
index 425647df..7659fede 100644
--- a/target/nextflow/samtools/samtools_sort/main.nf
+++ b/target/nextflow/samtools/samtools_sort/main.nf
@@ -3199,7 +3199,7 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/samtools/samtools_sort",
     "viash_version" : "0.9.0-RC6",
-    "git_commit" : "1bbebbb5cb1e1abdefa478488aaa240909e54316",
+    "git_commit" : "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e",
     "git_remote" : "https://github.com/viash-hub/biobox"
   },
   "package_config" : {
diff --git a/target/nextflow/samtools/samtools_stats/.config.vsh.yaml b/target/nextflow/samtools/samtools_stats/.config.vsh.yaml
index 5459370d..868fe861 100644
--- a/target/nextflow/samtools/samtools_stats/.config.vsh.yaml
+++ b/target/nextflow/samtools/samtools_stats/.config.vsh.yaml
@@ -401,7 +401,7 @@ build_info:
   output: "target/nextflow/samtools/samtools_stats"
   executable: "target/nextflow/samtools/samtools_stats/main.nf"
   viash_version: "0.9.0-RC6"
-  git_commit: "1bbebbb5cb1e1abdefa478488aaa240909e54316"
+  git_commit: "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
   git_remote: "https://github.com/viash-hub/biobox"
 package_config:
   name: "biobox"
diff --git a/target/nextflow/samtools/samtools_stats/main.nf b/target/nextflow/samtools/samtools_stats/main.nf
index ed3c76ba..771107f2 100644
--- a/target/nextflow/samtools/samtools_stats/main.nf
+++ b/target/nextflow/samtools/samtools_stats/main.nf
@@ -3269,7 +3269,7 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/samtools/samtools_stats",
     "viash_version" : "0.9.0-RC6",
-    "git_commit" : "1bbebbb5cb1e1abdefa478488aaa240909e54316",
+    "git_commit" : "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e",
     "git_remote" : "https://github.com/viash-hub/biobox"
   },
   "package_config" : {
diff --git a/target/nextflow/samtools/samtools_view/.config.vsh.yaml b/target/nextflow/samtools/samtools_view/.config.vsh.yaml
index fce29afb..97764ddb 100644
--- a/target/nextflow/samtools/samtools_view/.config.vsh.yaml
+++ b/target/nextflow/samtools/samtools_view/.config.vsh.yaml
@@ -665,7 +665,7 @@ build_info:
   output: "target/nextflow/samtools/samtools_view"
   executable: "target/nextflow/samtools/samtools_view/main.nf"
   viash_version: "0.9.0-RC6"
-  git_commit: "1bbebbb5cb1e1abdefa478488aaa240909e54316"
+  git_commit: "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
   git_remote: "https://github.com/viash-hub/biobox"
 package_config:
   name: "biobox"
diff --git a/target/nextflow/samtools/samtools_view/main.nf b/target/nextflow/samtools/samtools_view/main.nf
index 8902ee3d..19beb21b 100644
--- a/target/nextflow/samtools/samtools_view/main.nf
+++ b/target/nextflow/samtools/samtools_view/main.nf
@@ -3450,7 +3450,7 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/samtools/samtools_view",
     "viash_version" : "0.9.0-RC6",
-    "git_commit" : "1bbebbb5cb1e1abdefa478488aaa240909e54316",
+    "git_commit" : "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e",
     "git_remote" : "https://github.com/viash-hub/biobox"
   },
   "package_config" : {
diff --git a/target/nextflow/seqtk/seqtk_sample/.config.vsh.yaml b/target/nextflow/seqtk/seqtk_sample/.config.vsh.yaml
index 7e350357..149ee141 100644
--- a/target/nextflow/seqtk/seqtk_sample/.config.vsh.yaml
+++ b/target/nextflow/seqtk/seqtk_sample/.config.vsh.yaml
@@ -173,7 +173,7 @@ build_info:
   output: "target/nextflow/seqtk/seqtk_sample"
   executable: "target/nextflow/seqtk/seqtk_sample/main.nf"
   viash_version: "0.9.0-RC6"
-  git_commit: "1bbebbb5cb1e1abdefa478488aaa240909e54316"
+  git_commit: "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
   git_remote: "https://github.com/viash-hub/biobox"
 package_config:
   name: "biobox"
diff --git a/target/nextflow/seqtk/seqtk_sample/main.nf b/target/nextflow/seqtk/seqtk_sample/main.nf
index bb910c59..652527c2 100644
--- a/target/nextflow/seqtk/seqtk_sample/main.nf
+++ b/target/nextflow/seqtk/seqtk_sample/main.nf
@@ -3004,7 +3004,7 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/seqtk/seqtk_sample",
     "viash_version" : "0.9.0-RC6",
-    "git_commit" : "1bbebbb5cb1e1abdefa478488aaa240909e54316",
+    "git_commit" : "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e",
     "git_remote" : "https://github.com/viash-hub/biobox"
   },
   "package_config" : {
diff --git a/target/nextflow/seqtk/seqtk_subseq/.config.vsh.yaml b/target/nextflow/seqtk/seqtk_subseq/.config.vsh.yaml
index b0d49fc7..34125352 100644
--- a/target/nextflow/seqtk/seqtk_subseq/.config.vsh.yaml
+++ b/target/nextflow/seqtk/seqtk_subseq/.config.vsh.yaml
@@ -196,7 +196,7 @@ build_info:
   output: "target/nextflow/seqtk/seqtk_subseq"
   executable: "target/nextflow/seqtk/seqtk_subseq/main.nf"
   viash_version: "0.9.0-RC6"
-  git_commit: "1bbebbb5cb1e1abdefa478488aaa240909e54316"
+  git_commit: "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
   git_remote: "https://github.com/viash-hub/biobox"
 package_config:
   name: "biobox"
diff --git a/target/nextflow/seqtk/seqtk_subseq/main.nf b/target/nextflow/seqtk/seqtk_subseq/main.nf
index 00beb075..3bcd350d 100644
--- a/target/nextflow/seqtk/seqtk_subseq/main.nf
+++ b/target/nextflow/seqtk/seqtk_subseq/main.nf
@@ -3034,7 +3034,7 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/seqtk/seqtk_subseq",
     "viash_version" : "0.9.0-RC6",
-    "git_commit" : "1bbebbb5cb1e1abdefa478488aaa240909e54316",
+    "git_commit" : "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e",
     "git_remote" : "https://github.com/viash-hub/biobox"
   },
   "package_config" : {
diff --git a/target/nextflow/star/star_align_reads/.config.vsh.yaml b/target/nextflow/star/star_align_reads/.config.vsh.yaml
index 77c7a7c0..a348b04c 100644
--- a/target/nextflow/star/star_align_reads/.config.vsh.yaml
+++ b/target/nextflow/star/star_align_reads/.config.vsh.yaml
@@ -2663,7 +2663,7 @@ build_info:
   output: "target/nextflow/star/star_align_reads"
   executable: "target/nextflow/star/star_align_reads/main.nf"
   viash_version: "0.9.0-RC6"
-  git_commit: "1bbebbb5cb1e1abdefa478488aaa240909e54316"
+  git_commit: "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
   git_remote: "https://github.com/viash-hub/biobox"
 package_config:
   name: "biobox"
diff --git a/target/nextflow/star/star_align_reads/main.nf b/target/nextflow/star/star_align_reads/main.nf
index dc5361e2..dc2844b6 100644
--- a/target/nextflow/star/star_align_reads/main.nf
+++ b/target/nextflow/star/star_align_reads/main.nf
@@ -5917,7 +5917,7 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/star/star_align_reads",
     "viash_version" : "0.9.0-RC6",
-    "git_commit" : "1bbebbb5cb1e1abdefa478488aaa240909e54316",
+    "git_commit" : "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e",
     "git_remote" : "https://github.com/viash-hub/biobox"
   },
   "package_config" : {
diff --git a/target/nextflow/star/star_genome_generate/.config.vsh.yaml b/target/nextflow/star/star_genome_generate/.config.vsh.yaml
index 8a2c751b..686f5f9e 100644
--- a/target/nextflow/star/star_genome_generate/.config.vsh.yaml
+++ b/target/nextflow/star/star_genome_generate/.config.vsh.yaml
@@ -333,7 +333,7 @@ build_info:
   output: "target/nextflow/star/star_genome_generate"
   executable: "target/nextflow/star/star_genome_generate/main.nf"
   viash_version: "0.9.0-RC6"
-  git_commit: "1bbebbb5cb1e1abdefa478488aaa240909e54316"
+  git_commit: "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
   git_remote: "https://github.com/viash-hub/biobox"
 package_config:
   name: "biobox"
diff --git a/target/nextflow/star/star_genome_generate/main.nf b/target/nextflow/star/star_genome_generate/main.nf
index b0e39f3f..8ce75b95 100644
--- a/target/nextflow/star/star_genome_generate/main.nf
+++ b/target/nextflow/star/star_genome_generate/main.nf
@@ -3169,7 +3169,7 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/star/star_genome_generate",
     "viash_version" : "0.9.0-RC6",
-    "git_commit" : "1bbebbb5cb1e1abdefa478488aaa240909e54316",
+    "git_commit" : "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e",
     "git_remote" : "https://github.com/viash-hub/biobox"
   },
   "package_config" : {
diff --git a/target/nextflow/umi_tools/umi_tools_dedup/.config.vsh.yaml b/target/nextflow/umi_tools/umi_tools_dedup/.config.vsh.yaml
index 528efff0..ba9d6592 100644
--- a/target/nextflow/umi_tools/umi_tools_dedup/.config.vsh.yaml
+++ b/target/nextflow/umi_tools/umi_tools_dedup/.config.vsh.yaml
@@ -611,7 +611,7 @@ build_info:
   output: "target/nextflow/umi_tools/umi_tools_dedup"
   executable: "target/nextflow/umi_tools/umi_tools_dedup/main.nf"
   viash_version: "0.9.0-RC6"
-  git_commit: "1bbebbb5cb1e1abdefa478488aaa240909e54316"
+  git_commit: "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
   git_remote: "https://github.com/viash-hub/biobox"
 package_config:
   name: "biobox"
diff --git a/target/nextflow/umi_tools/umi_tools_dedup/main.nf b/target/nextflow/umi_tools/umi_tools_dedup/main.nf
index 99aa5c41..b09df550 100644
--- a/target/nextflow/umi_tools/umi_tools_dedup/main.nf
+++ b/target/nextflow/umi_tools/umi_tools_dedup/main.nf
@@ -3461,7 +3461,7 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/umi_tools/umi_tools_dedup",
     "viash_version" : "0.9.0-RC6",
-    "git_commit" : "1bbebbb5cb1e1abdefa478488aaa240909e54316",
+    "git_commit" : "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e",
     "git_remote" : "https://github.com/viash-hub/biobox"
   },
   "package_config" : {
diff --git a/target/nextflow/umi_tools/umi_tools_extract/.config.vsh.yaml b/target/nextflow/umi_tools/umi_tools_extract/.config.vsh.yaml
index adf2fcee..9dab261a 100644
--- a/target/nextflow/umi_tools/umi_tools_extract/.config.vsh.yaml
+++ b/target/nextflow/umi_tools/umi_tools_extract/.config.vsh.yaml
@@ -449,7 +449,7 @@ build_info:
   output: "target/nextflow/umi_tools/umi_tools_extract"
   executable: "target/nextflow/umi_tools/umi_tools_extract/main.nf"
   viash_version: "0.9.0-RC6"
-  git_commit: "1bbebbb5cb1e1abdefa478488aaa240909e54316"
+  git_commit: "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
   git_remote: "https://github.com/viash-hub/biobox"
 package_config:
   name: "biobox"
diff --git a/target/nextflow/umi_tools/umi_tools_extract/main.nf b/target/nextflow/umi_tools/umi_tools_extract/main.nf
index 1fca33a8..20d47517 100644
--- a/target/nextflow/umi_tools/umi_tools_extract/main.nf
+++ b/target/nextflow/umi_tools/umi_tools_extract/main.nf
@@ -3290,7 +3290,7 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/umi_tools/umi_tools_extract",
     "viash_version" : "0.9.0-RC6",
-    "git_commit" : "1bbebbb5cb1e1abdefa478488aaa240909e54316",
+    "git_commit" : "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e",
     "git_remote" : "https://github.com/viash-hub/biobox"
   },
   "package_config" : {