Build branch main with version main (4aa0a89)

Build pipeline: viash-hub.biobox.main-rgg5q

Source commit: 4aa0a893d2

Source message: Add agat convert bed2gff (#97)

* add config

* add help

* add script

* add test data and expected output file

* add script to get test data

* add tests

* update changelog

* fix path to test data

---------

Co-authored-by: Robrecht Cannoodt <rcannood@gmail.com>

CHANGELOG.md

@@ -19,11 +19,14 @@
   - `seqtk/seqtk_subseq`: Extract the sequences (complete or subsequence) from the FASTA/FASTQ files
                 based on a provided sequence IDs or region coordinates file (PR #85).
 
-* `agat/agat_convert_sp_gff2gtf`: convert any GTF/GFF file into a proper GTF file (PR #76).
+* `agat`:
+  - `agat_convert_sp_gff2gtf`: convert any GTF/GFF file into a proper GTF file (PR #76).
+  - `/agat_convert_bed2gff`: convert bed file to gff format (PR #97).
 
 * `bedtools`:
-    - `bedtools/bedtools_intersect`: Allows one to screen for overlaps between two sets of genomic features (PR #94).
-    - `bedtools/bedtools_sort`: Sorts a feature file (bed/gff/vcf) by chromosome and other criteria (PR #98).
+  - `bedtools/bedtools_intersect`: Allows one to screen for overlaps between two sets of genomic features (PR #94).
+  - `bedtools/bedtools_sort`: Sorts a feature file (bed/gff/vcf) by chromosome and other criteria (PR #98).
+
 
 ## MINOR CHANGES