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Build branch main with version main (4aa0a89)

Browse Source 
Build pipeline: viash-hub.biobox.main-rgg5q

Source commit: 4aa0a893d2

Source message: Add agat convert bed2gff (#97)

* add config

* add help

* add script

* add test data and expected output file

* add script to get test data

* add tests

* update changelog

* fix path to test data

---------

Co-authored-by: Robrecht Cannoodt <rcannood@gmail.com>
This commit is contained in:
CI
2024-07-31 19:45:06 +00:00
parent da141b5d98
commit 833a44f68a
166 changed files with 6004 additions and 1832 deletions
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2
target/executable/seqtk/seqtk_sample/.config.vsh.yaml
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@@ -173,7 +173,7 @@ build_info:
output: "target/executable/seqtk/seqtk_sample"
executable: "target/executable/seqtk/seqtk_sample/seqtk_sample"
viash_version: "0.9.0-RC6"
git_commit: "de8b4248b64e0d2e04a6f20c35212403c57a1058"
git_commit: "4aa0a893d2f8be5f0d03797afc15a04c53664367"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

4
target/executable/seqtk/seqtk_sample/seqtk_sample
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@@ -480,9 +480,9 @@ FROM quay.io/biocontainers/seqtk:1.4--he4a0461_2
ENTRYPOINT []
LABEL org.opencontainers.image.authors="Jakub Majercik"
LABEL org.opencontainers.image.description="Companion container for running component seqtk seqtk_sample"
LABEL org.opencontainers.image.created="2024-07-31T19:24:21Z"
LABEL org.opencontainers.image.created="2024-07-31T19:27:37Z"
LABEL org.opencontainers.image.source="https://github.com/lh3/seqtk/tree/v1.4"
LABEL org.opencontainers.image.revision="de8b4248b64e0d2e04a6f20c35212403c57a1058"
LABEL org.opencontainers.image.revision="4aa0a893d2f8be5f0d03797afc15a04c53664367"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

2
target/executable/seqtk/seqtk_subseq/.config.vsh.yaml
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@@ -196,7 +196,7 @@ build_info:
output: "target/executable/seqtk/seqtk_subseq"
executable: "target/executable/seqtk/seqtk_subseq/seqtk_subseq"
viash_version: "0.9.0-RC6"
git_commit: "de8b4248b64e0d2e04a6f20c35212403c57a1058"
git_commit: "4aa0a893d2f8be5f0d03797afc15a04c53664367"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

4
target/executable/seqtk/seqtk_subseq/seqtk_subseq
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@@ -490,9 +490,9 @@ RUN echo $(echo $(seqtk 2>&1) | sed -n 's/.*\(Version: [^ ]*\).*/\1/p') > /var/s
LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo"
LABEL org.opencontainers.image.description="Companion container for running component seqtk seqtk_subseq"
LABEL org.opencontainers.image.created="2024-07-31T19:24:21Z"
LABEL org.opencontainers.image.created="2024-07-31T19:27:36Z"
LABEL org.opencontainers.image.source="https://github.com/lh3/seqtk/tree/v1.4"
LABEL org.opencontainers.image.revision="de8b4248b64e0d2e04a6f20c35212403c57a1058"
LABEL org.opencontainers.image.revision="4aa0a893d2f8be5f0d03797afc15a04c53664367"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER