diff --git a/src/sgdemux/script.sh b/src/sgdemux/script.sh index 7fd5091f..356289fe 100644 --- a/src/sgdemux/script.sh +++ b/src/sgdemux/script.sh @@ -38,10 +38,32 @@ if [ "$par_most_unmatched_to_output" -eq "0" ] && [ ! -z "$par_most_frequent_unm exit 1 fi +# The sgdemux documentation recommends the following settings: +# 1/3 of available threads for compression +# 1/6 of available threads for writing +# 1/6-1/3 of available threads for demultiplexing +declare -A thread_settings=(["compression_threads"]="3" + ["writing_threads"]="6" + ["demultiplexing_threads"]="3" + ) +if [ ! -z "$meta_cpus" ]; then + for setting_var in "${!thread_settings[@]}"; do + denominator=${thread_settings[$setting_var]} + result=$(( $meta_cpus / $denominator )) + if (( $result == 0 )); then + result=1 + fi + declare $setting_var=$result + done +fi + args=( --fastqs ${fastqs[@]} --sample-metadata "$par_sample_metadata" --output-dir "$TMPDIR" + ${demultiplexing_threads:+--demux-threads $demultiplexing_threads} + ${writing_threads:+--writer-threads $writing_threads} + ${compression_threads:+--compressor-threads $compression_threads} ${par_allowed_mismatches:+--allowed-mismatches $par_allowed_mismatches} ${par_min_delta:+--min-delta $par_min_delta} ${par_free_ns:+--free-ns $par_free_ns} diff --git a/src/sgdemux/test.sh b/src/sgdemux/test.sh index 548b4ec8..f3eea062 100644 --- a/src/sgdemux/test.sh +++ b/src/sgdemux/test.sh @@ -34,7 +34,8 @@ mkdir "$sample_dir_test_1" --most_frequent_unmatched "$output_test1/most_frequent_unmatched.tsv" \ --sample_barcode_hop_metrics "$output_test1/sample_barcode_hop_metrics.tsv" \ --per_sample_metrics "$output_test1/per_sample_metrics.tsv" \ - --per_project_metrics "$output_test1/per_project_metrics.tsv" + --per_project_metrics "$output_test1/per_project_metrics.tsv" \ + ---cpus 1 # Check for correct number of output FASTQ files readarray -d '' output_fastq < <(find "$sample_dir_test_1" -name "*.fastq.gz" -print0) diff --git a/target/executable/agat/agat_convert_bed2gff/.config.vsh.yaml b/target/executable/agat/agat_convert_bed2gff/.config.vsh.yaml index ac7c3697..d50e36b5 100644 --- a/target/executable/agat/agat_convert_bed2gff/.config.vsh.yaml +++ b/target/executable/agat/agat_convert_bed2gff/.config.vsh.yaml @@ -235,9 +235,9 @@ build_info: output: "target/executable/agat/agat_convert_bed2gff" executable: "target/executable/agat/agat_convert_bed2gff/agat_convert_bed2gff" viash_version: "0.9.0" - git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757" - git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox" - git_tag: "v0.2.0-26-gdd75d6f" + git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812" + git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-27-g402ad6a" package_config: name: "biobox" version: "add_sgdemux" diff --git a/target/executable/agat/agat_convert_bed2gff/agat_convert_bed2gff b/target/executable/agat/agat_convert_bed2gff/agat_convert_bed2gff index 2dd94ed9..36ce4c40 100755 --- a/target/executable/agat/agat_convert_bed2gff/agat_convert_bed2gff +++ b/target/executable/agat/agat_convert_bed2gff/agat_convert_bed2gff @@ -515,9 +515,9 @@ RUN agat --version | sed 's/AGAT\s\(.*\)/agat: "\1"/' > /var/software_versions.t LABEL org.opencontainers.image.authors="Leïla Paquay" LABEL org.opencontainers.image.description="Companion container for running component agat agat_convert_bed2gff" -LABEL org.opencontainers.image.created="2024-11-13T14:00:22Z" +LABEL org.opencontainers.image.created="2024-11-14T12:50:36Z" LABEL org.opencontainers.image.source="https://github.com/NBISweden/AGAT" -LABEL org.opencontainers.image.revision="dd75d6f397b5865acc31c39e7b613f8fb2989757" +LABEL org.opencontainers.image.revision="402ad6a813c0d0b141bbf8f9a3aab9c270a74812" LABEL org.opencontainers.image.version="add_sgdemux" VIASHDOCKER diff --git a/target/executable/agat/agat_convert_embl2gff/.config.vsh.yaml b/target/executable/agat/agat_convert_embl2gff/.config.vsh.yaml index 9dc4f34a..7ac590e0 100644 --- a/target/executable/agat/agat_convert_embl2gff/.config.vsh.yaml +++ b/target/executable/agat/agat_convert_embl2gff/.config.vsh.yaml @@ -225,9 +225,9 @@ build_info: output: "target/executable/agat/agat_convert_embl2gff" executable: "target/executable/agat/agat_convert_embl2gff/agat_convert_embl2gff" viash_version: "0.9.0" - git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757" - git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox" - git_tag: "v0.2.0-26-gdd75d6f" + git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812" + git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-27-g402ad6a" package_config: name: "biobox" version: "add_sgdemux" diff --git a/target/executable/agat/agat_convert_embl2gff/agat_convert_embl2gff b/target/executable/agat/agat_convert_embl2gff/agat_convert_embl2gff index 9e43032a..3d157271 100755 --- a/target/executable/agat/agat_convert_embl2gff/agat_convert_embl2gff +++ b/target/executable/agat/agat_convert_embl2gff/agat_convert_embl2gff @@ -505,9 +505,9 @@ RUN agat --version | sed 's/AGAT\s\(.*\)/agat: "\1"/' > /var/software_versions.t LABEL org.opencontainers.image.authors="Leïla Paquay" LABEL org.opencontainers.image.description="Companion container for running component agat agat_convert_embl2gff" -LABEL org.opencontainers.image.created="2024-11-13T14:00:24Z" +LABEL org.opencontainers.image.created="2024-11-14T12:50:38Z" LABEL org.opencontainers.image.source="https://github.com/NBISweden/AGAT" -LABEL org.opencontainers.image.revision="dd75d6f397b5865acc31c39e7b613f8fb2989757" +LABEL org.opencontainers.image.revision="402ad6a813c0d0b141bbf8f9a3aab9c270a74812" LABEL org.opencontainers.image.version="add_sgdemux" VIASHDOCKER diff --git a/target/executable/agat/agat_convert_genscan2gff/.config.vsh.yaml b/target/executable/agat/agat_convert_genscan2gff/.config.vsh.yaml index 759067d7..536d3f2e 100644 --- a/target/executable/agat/agat_convert_genscan2gff/.config.vsh.yaml +++ b/target/executable/agat/agat_convert_genscan2gff/.config.vsh.yaml @@ -230,9 +230,9 @@ build_info: output: "target/executable/agat/agat_convert_genscan2gff" executable: "target/executable/agat/agat_convert_genscan2gff/agat_convert_genscan2gff" viash_version: "0.9.0" - git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757" - git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox" - git_tag: "v0.2.0-26-gdd75d6f" + git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812" + git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-27-g402ad6a" package_config: name: "biobox" version: "add_sgdemux" diff --git a/target/executable/agat/agat_convert_genscan2gff/agat_convert_genscan2gff b/target/executable/agat/agat_convert_genscan2gff/agat_convert_genscan2gff index 66383e66..325a8efe 100755 --- a/target/executable/agat/agat_convert_genscan2gff/agat_convert_genscan2gff +++ b/target/executable/agat/agat_convert_genscan2gff/agat_convert_genscan2gff @@ -514,9 +514,9 @@ RUN agat --version | sed 's/AGAT\s\(.*\)/agat: "\1"/' > /var/software_versions.t LABEL org.opencontainers.image.authors="Leïla Paquay" LABEL org.opencontainers.image.description="Companion container for running component agat agat_convert_genscan2gff" -LABEL org.opencontainers.image.created="2024-11-13T14:00:25Z" +LABEL org.opencontainers.image.created="2024-11-14T12:50:38Z" LABEL org.opencontainers.image.source="https://github.com/NBISweden/AGAT" -LABEL org.opencontainers.image.revision="dd75d6f397b5865acc31c39e7b613f8fb2989757" +LABEL org.opencontainers.image.revision="402ad6a813c0d0b141bbf8f9a3aab9c270a74812" LABEL org.opencontainers.image.version="add_sgdemux" VIASHDOCKER diff --git a/target/executable/agat/agat_convert_mfannot2gff/.config.vsh.yaml b/target/executable/agat/agat_convert_mfannot2gff/.config.vsh.yaml index aa27421e..c0887ee4 100644 --- a/target/executable/agat/agat_convert_mfannot2gff/.config.vsh.yaml +++ b/target/executable/agat/agat_convert_mfannot2gff/.config.vsh.yaml @@ -186,9 +186,9 @@ build_info: output: "target/executable/agat/agat_convert_mfannot2gff" executable: "target/executable/agat/agat_convert_mfannot2gff/agat_convert_mfannot2gff" viash_version: "0.9.0" - git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757" - git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox" - git_tag: "v0.2.0-26-gdd75d6f" + git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812" + git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-27-g402ad6a" package_config: name: "biobox" version: "add_sgdemux" diff --git a/target/executable/agat/agat_convert_mfannot2gff/agat_convert_mfannot2gff b/target/executable/agat/agat_convert_mfannot2gff/agat_convert_mfannot2gff index e4641462..ea9b052b 100755 --- a/target/executable/agat/agat_convert_mfannot2gff/agat_convert_mfannot2gff +++ b/target/executable/agat/agat_convert_mfannot2gff/agat_convert_mfannot2gff @@ -480,9 +480,9 @@ RUN agat --version | sed 's/AGAT\s\(.*\)/agat: "\1"/' > /var/software_versions.t LABEL org.opencontainers.image.authors="Leïla Paquay" LABEL org.opencontainers.image.description="Companion container for running component agat agat_convert_mfannot2gff" -LABEL org.opencontainers.image.created="2024-11-13T14:00:36Z" +LABEL org.opencontainers.image.created="2024-11-14T12:50:49Z" LABEL org.opencontainers.image.source="https://github.com/NBISweden/AGAT" -LABEL org.opencontainers.image.revision="dd75d6f397b5865acc31c39e7b613f8fb2989757" +LABEL org.opencontainers.image.revision="402ad6a813c0d0b141bbf8f9a3aab9c270a74812" LABEL org.opencontainers.image.version="add_sgdemux" VIASHDOCKER diff --git a/target/executable/agat/agat_convert_sp_gff2gtf/.config.vsh.yaml b/target/executable/agat/agat_convert_sp_gff2gtf/.config.vsh.yaml index be34d9e2..dd767d5a 100644 --- a/target/executable/agat/agat_convert_sp_gff2gtf/.config.vsh.yaml +++ b/target/executable/agat/agat_convert_sp_gff2gtf/.config.vsh.yaml @@ -228,9 +228,9 @@ build_info: output: "target/executable/agat/agat_convert_sp_gff2gtf" executable: "target/executable/agat/agat_convert_sp_gff2gtf/agat_convert_sp_gff2gtf" viash_version: "0.9.0" - git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757" - git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox" - git_tag: "v0.2.0-26-gdd75d6f" + git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812" + git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-27-g402ad6a" package_config: name: "biobox" version: "add_sgdemux" diff --git a/target/executable/agat/agat_convert_sp_gff2gtf/agat_convert_sp_gff2gtf b/target/executable/agat/agat_convert_sp_gff2gtf/agat_convert_sp_gff2gtf index 5bc57526..04369e04 100755 --- a/target/executable/agat/agat_convert_sp_gff2gtf/agat_convert_sp_gff2gtf +++ b/target/executable/agat/agat_convert_sp_gff2gtf/agat_convert_sp_gff2gtf @@ -519,9 +519,9 @@ RUN agat --version | sed 's/AGAT\s\(.*\)/agat: "\1"/' > /var/software_versions.t LABEL org.opencontainers.image.authors="Leïla Paquay" LABEL org.opencontainers.image.description="Companion container for running component agat agat_convert_sp_gff2gtf" -LABEL org.opencontainers.image.created="2024-11-13T14:00:23Z" +LABEL org.opencontainers.image.created="2024-11-14T12:50:36Z" LABEL org.opencontainers.image.source="https://github.com/NBISweden/AGAT" -LABEL org.opencontainers.image.revision="dd75d6f397b5865acc31c39e7b613f8fb2989757" +LABEL org.opencontainers.image.revision="402ad6a813c0d0b141bbf8f9a3aab9c270a74812" LABEL org.opencontainers.image.version="add_sgdemux" VIASHDOCKER diff --git a/target/executable/agat/agat_convert_sp_gff2tsv/.config.vsh.yaml b/target/executable/agat/agat_convert_sp_gff2tsv/.config.vsh.yaml index 9d8d5c21..4f66840c 100644 --- a/target/executable/agat/agat_convert_sp_gff2tsv/.config.vsh.yaml +++ b/target/executable/agat/agat_convert_sp_gff2tsv/.config.vsh.yaml @@ -188,9 +188,9 @@ build_info: output: "target/executable/agat/agat_convert_sp_gff2tsv" executable: "target/executable/agat/agat_convert_sp_gff2tsv/agat_convert_sp_gff2tsv" viash_version: "0.9.0" - git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757" - git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox" - git_tag: "v0.2.0-26-gdd75d6f" + git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812" + git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-27-g402ad6a" package_config: name: "biobox" version: "add_sgdemux" diff --git a/target/executable/agat/agat_convert_sp_gff2tsv/agat_convert_sp_gff2tsv b/target/executable/agat/agat_convert_sp_gff2tsv/agat_convert_sp_gff2tsv index 310c58b3..c648cad6 100755 --- a/target/executable/agat/agat_convert_sp_gff2tsv/agat_convert_sp_gff2tsv +++ b/target/executable/agat/agat_convert_sp_gff2tsv/agat_convert_sp_gff2tsv @@ -484,9 +484,9 @@ RUN agat --version | sed 's/AGAT\s\(.*\)/agat: "\1"/' > /var/software_versions.t LABEL org.opencontainers.image.authors="Leïla Paquay" LABEL org.opencontainers.image.description="Companion container for running component agat agat_convert_sp_gff2tsv" -LABEL org.opencontainers.image.created="2024-11-13T14:00:23Z" +LABEL org.opencontainers.image.created="2024-11-14T12:50:37Z" LABEL org.opencontainers.image.source="https://github.com/NBISweden/AGAT" -LABEL org.opencontainers.image.revision="dd75d6f397b5865acc31c39e7b613f8fb2989757" +LABEL org.opencontainers.image.revision="402ad6a813c0d0b141bbf8f9a3aab9c270a74812" LABEL org.opencontainers.image.version="add_sgdemux" VIASHDOCKER diff --git a/target/executable/agat/agat_convert_sp_gxf2gxf/.config.vsh.yaml b/target/executable/agat/agat_convert_sp_gxf2gxf/.config.vsh.yaml index 48445888..b3d103a3 100644 --- a/target/executable/agat/agat_convert_sp_gxf2gxf/.config.vsh.yaml +++ b/target/executable/agat/agat_convert_sp_gxf2gxf/.config.vsh.yaml @@ -195,9 +195,9 @@ build_info: output: "target/executable/agat/agat_convert_sp_gxf2gxf" executable: "target/executable/agat/agat_convert_sp_gxf2gxf/agat_convert_sp_gxf2gxf" viash_version: "0.9.0" - git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757" - git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox" - git_tag: "v0.2.0-26-gdd75d6f" + git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812" + git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-27-g402ad6a" package_config: name: "biobox" version: "add_sgdemux" diff --git a/target/executable/agat/agat_convert_sp_gxf2gxf/agat_convert_sp_gxf2gxf b/target/executable/agat/agat_convert_sp_gxf2gxf/agat_convert_sp_gxf2gxf index 61c9e30e..0f56730b 100755 --- a/target/executable/agat/agat_convert_sp_gxf2gxf/agat_convert_sp_gxf2gxf +++ b/target/executable/agat/agat_convert_sp_gxf2gxf/agat_convert_sp_gxf2gxf @@ -493,9 +493,9 @@ RUN agat --version | sed 's/AGAT\s\(.*\)/agat: "\1"/' > /var/software_versions.t LABEL org.opencontainers.image.authors="Leïla Paquay" LABEL org.opencontainers.image.description="Companion container for running component agat agat_convert_sp_gxf2gxf" -LABEL org.opencontainers.image.created="2024-11-13T14:00:22Z" +LABEL org.opencontainers.image.created="2024-11-14T12:50:35Z" LABEL org.opencontainers.image.source="https://github.com/NBISweden/AGAT" -LABEL org.opencontainers.image.revision="dd75d6f397b5865acc31c39e7b613f8fb2989757" +LABEL org.opencontainers.image.revision="402ad6a813c0d0b141bbf8f9a3aab9c270a74812" LABEL org.opencontainers.image.version="add_sgdemux" VIASHDOCKER diff --git a/target/executable/agat/agat_sp_add_introns/.config.vsh.yaml b/target/executable/agat/agat_sp_add_introns/.config.vsh.yaml index 83efb0ef..850b6553 100644 --- a/target/executable/agat/agat_sp_add_introns/.config.vsh.yaml +++ b/target/executable/agat/agat_sp_add_introns/.config.vsh.yaml @@ -186,9 +186,9 @@ build_info: output: "target/executable/agat/agat_sp_add_introns" executable: "target/executable/agat/agat_sp_add_introns/agat_sp_add_introns" viash_version: "0.9.0" - git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757" - git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox" - git_tag: "v0.2.0-26-gdd75d6f" + git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812" + git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-27-g402ad6a" package_config: name: "biobox" version: "add_sgdemux" diff --git a/target/executable/agat/agat_sp_add_introns/agat_sp_add_introns b/target/executable/agat/agat_sp_add_introns/agat_sp_add_introns index 8b550524..9e546016 100755 --- a/target/executable/agat/agat_sp_add_introns/agat_sp_add_introns +++ b/target/executable/agat/agat_sp_add_introns/agat_sp_add_introns @@ -479,9 +479,9 @@ RUN agat --version | sed 's/AGAT\s\(.*\)/agat: "\1"/' > /var/software_versions.t LABEL org.opencontainers.image.authors="Leïla Paquay" LABEL org.opencontainers.image.description="Companion container for running component agat agat_sp_add_introns" -LABEL org.opencontainers.image.created="2024-11-13T14:00:23Z" +LABEL org.opencontainers.image.created="2024-11-14T12:50:37Z" LABEL org.opencontainers.image.source="https://github.com/NBISweden/AGAT" -LABEL org.opencontainers.image.revision="dd75d6f397b5865acc31c39e7b613f8fb2989757" +LABEL org.opencontainers.image.revision="402ad6a813c0d0b141bbf8f9a3aab9c270a74812" LABEL org.opencontainers.image.version="add_sgdemux" VIASHDOCKER diff --git a/target/executable/agat/agat_sp_filter_feature_from_kill_list/.config.vsh.yaml b/target/executable/agat/agat_sp_filter_feature_from_kill_list/.config.vsh.yaml index 43b03de4..8147c20b 100644 --- a/target/executable/agat/agat_sp_filter_feature_from_kill_list/.config.vsh.yaml +++ b/target/executable/agat/agat_sp_filter_feature_from_kill_list/.config.vsh.yaml @@ -236,9 +236,9 @@ build_info: output: "target/executable/agat/agat_sp_filter_feature_from_kill_list" executable: "target/executable/agat/agat_sp_filter_feature_from_kill_list/agat_sp_filter_feature_from_kill_list" viash_version: "0.9.0" - git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757" - git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox" - git_tag: "v0.2.0-26-gdd75d6f" + git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812" + git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-27-g402ad6a" package_config: name: "biobox" version: "add_sgdemux" diff --git a/target/executable/agat/agat_sp_filter_feature_from_kill_list/agat_sp_filter_feature_from_kill_list b/target/executable/agat/agat_sp_filter_feature_from_kill_list/agat_sp_filter_feature_from_kill_list index 6b3b842b..fa13b05f 100755 --- a/target/executable/agat/agat_sp_filter_feature_from_kill_list/agat_sp_filter_feature_from_kill_list +++ b/target/executable/agat/agat_sp_filter_feature_from_kill_list/agat_sp_filter_feature_from_kill_list @@ -517,9 +517,9 @@ RUN agat --version | sed 's/AGAT\s\(.*\)/agat: "\1"/' > /var/software_versions.t LABEL org.opencontainers.image.authors="Leïla Paquay" LABEL org.opencontainers.image.description="Companion container for running component agat agat_sp_filter_feature_from_kill_list" -LABEL org.opencontainers.image.created="2024-11-13T14:00:25Z" +LABEL org.opencontainers.image.created="2024-11-14T12:50:38Z" LABEL org.opencontainers.image.source="https://github.com/NBISweden/AGAT" -LABEL org.opencontainers.image.revision="dd75d6f397b5865acc31c39e7b613f8fb2989757" +LABEL org.opencontainers.image.revision="402ad6a813c0d0b141bbf8f9a3aab9c270a74812" LABEL org.opencontainers.image.version="add_sgdemux" VIASHDOCKER diff --git a/target/executable/agat/agat_sp_merge_annotations/.config.vsh.yaml b/target/executable/agat/agat_sp_merge_annotations/.config.vsh.yaml index e0f393f9..b7881258 100644 --- a/target/executable/agat/agat_sp_merge_annotations/.config.vsh.yaml +++ b/target/executable/agat/agat_sp_merge_annotations/.config.vsh.yaml @@ -184,9 +184,9 @@ build_info: output: "target/executable/agat/agat_sp_merge_annotations" executable: "target/executable/agat/agat_sp_merge_annotations/agat_sp_merge_annotations" viash_version: "0.9.0" - git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757" - git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox" - git_tag: "v0.2.0-26-gdd75d6f" + git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812" + git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-27-g402ad6a" package_config: name: "biobox" version: "add_sgdemux" diff --git a/target/executable/agat/agat_sp_merge_annotations/agat_sp_merge_annotations b/target/executable/agat/agat_sp_merge_annotations/agat_sp_merge_annotations index 9d49d499..faf3fb7b 100755 --- a/target/executable/agat/agat_sp_merge_annotations/agat_sp_merge_annotations +++ b/target/executable/agat/agat_sp_merge_annotations/agat_sp_merge_annotations @@ -482,9 +482,9 @@ RUN agat --version | sed 's/AGAT\s\(.*\)/agat: "\1"/' > /var/software_versions.t LABEL org.opencontainers.image.authors="Leïla Paquay" LABEL org.opencontainers.image.description="Companion container for running component agat agat_sp_merge_annotations" -LABEL org.opencontainers.image.created="2024-11-13T14:00:24Z" +LABEL org.opencontainers.image.created="2024-11-14T12:50:37Z" LABEL org.opencontainers.image.source="https://github.com/NBISweden/AGAT" -LABEL org.opencontainers.image.revision="dd75d6f397b5865acc31c39e7b613f8fb2989757" +LABEL org.opencontainers.image.revision="402ad6a813c0d0b141bbf8f9a3aab9c270a74812" LABEL org.opencontainers.image.version="add_sgdemux" VIASHDOCKER diff --git a/target/executable/agat/agat_sp_statistics/.config.vsh.yaml b/target/executable/agat/agat_sp_statistics/.config.vsh.yaml index 67424448..07296536 100644 --- a/target/executable/agat/agat_sp_statistics/.config.vsh.yaml +++ b/target/executable/agat/agat_sp_statistics/.config.vsh.yaml @@ -231,9 +231,9 @@ build_info: output: "target/executable/agat/agat_sp_statistics" executable: "target/executable/agat/agat_sp_statistics/agat_sp_statistics" viash_version: "0.9.0" - git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757" - git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox" - git_tag: "v0.2.0-26-gdd75d6f" + git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812" + git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-27-g402ad6a" package_config: name: "biobox" version: "add_sgdemux" diff --git a/target/executable/agat/agat_sp_statistics/agat_sp_statistics b/target/executable/agat/agat_sp_statistics/agat_sp_statistics index f1fba0db..56addbdc 100755 --- a/target/executable/agat/agat_sp_statistics/agat_sp_statistics +++ b/target/executable/agat/agat_sp_statistics/agat_sp_statistics @@ -507,9 +507,9 @@ RUN agat --version | sed 's/.*v\.//; s/\s.*//' | sed 's/^/AGAT: /' > /var/softwa LABEL org.opencontainers.image.authors="Leïla Paquay" LABEL org.opencontainers.image.description="Companion container for running component agat agat_sp_statistics" -LABEL org.opencontainers.image.created="2024-11-13T14:00:24Z" +LABEL org.opencontainers.image.created="2024-11-14T12:50:37Z" LABEL org.opencontainers.image.source="https://github.com/NBISweden/AGAT" -LABEL org.opencontainers.image.revision="dd75d6f397b5865acc31c39e7b613f8fb2989757" +LABEL org.opencontainers.image.revision="402ad6a813c0d0b141bbf8f9a3aab9c270a74812" LABEL org.opencontainers.image.version="add_sgdemux" VIASHDOCKER diff --git a/target/executable/agat/agat_sq_stat_basic/.config.vsh.yaml b/target/executable/agat/agat_sq_stat_basic/.config.vsh.yaml index 448cf648..f99b4b74 100644 --- a/target/executable/agat/agat_sq_stat_basic/.config.vsh.yaml +++ b/target/executable/agat/agat_sq_stat_basic/.config.vsh.yaml @@ -227,9 +227,9 @@ build_info: output: "target/executable/agat/agat_sq_stat_basic" executable: "target/executable/agat/agat_sq_stat_basic/agat_sq_stat_basic" viash_version: "0.9.0" - git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757" - git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox" - git_tag: "v0.2.0-26-gdd75d6f" + git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812" + git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-27-g402ad6a" package_config: name: "biobox" version: "add_sgdemux" diff --git a/target/executable/agat/agat_sq_stat_basic/agat_sq_stat_basic b/target/executable/agat/agat_sq_stat_basic/agat_sq_stat_basic index 745c1d59..640245a4 100755 --- a/target/executable/agat/agat_sq_stat_basic/agat_sq_stat_basic +++ b/target/executable/agat/agat_sq_stat_basic/agat_sq_stat_basic @@ -507,9 +507,9 @@ RUN agat --version | sed 's/AGAT\s\(.*\)/agat: "\1"/' > /var/software_versions.t LABEL org.opencontainers.image.authors="Leïla Paquay" LABEL org.opencontainers.image.description="Companion container for running component agat agat_sq_stat_basic" -LABEL org.opencontainers.image.created="2024-11-13T14:00:36Z" +LABEL org.opencontainers.image.created="2024-11-14T12:50:49Z" LABEL org.opencontainers.image.source="https://github.com/NBISweden/AGAT" -LABEL org.opencontainers.image.revision="dd75d6f397b5865acc31c39e7b613f8fb2989757" +LABEL org.opencontainers.image.revision="402ad6a813c0d0b141bbf8f9a3aab9c270a74812" LABEL org.opencontainers.image.version="add_sgdemux" VIASHDOCKER diff --git a/target/executable/arriba/.config.vsh.yaml b/target/executable/arriba/.config.vsh.yaml index 303aee43..0928c6a2 100644 --- a/target/executable/arriba/.config.vsh.yaml +++ b/target/executable/arriba/.config.vsh.yaml @@ -706,9 +706,9 @@ build_info: output: "target/executable/arriba" executable: "target/executable/arriba/arriba" viash_version: "0.9.0" - git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757" - git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox" - git_tag: "v0.2.0-26-gdd75d6f" + git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812" + git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-27-g402ad6a" package_config: name: "biobox" version: "add_sgdemux" diff --git a/target/executable/arriba/arriba b/target/executable/arriba/arriba index ca5eca3f..a12f7901 100755 --- a/target/executable/arriba/arriba +++ b/target/executable/arriba/arriba @@ -754,9 +754,9 @@ RUN arriba -h | grep 'Version:' 2>&1 | sed 's/Version:\s\(.*\)/arriba: "\1"/' > LABEL org.opencontainers.image.authors="Robrecht Cannoodt" LABEL org.opencontainers.image.description="Companion container for running component arriba" -LABEL org.opencontainers.image.created="2024-11-13T14:00:26Z" +LABEL org.opencontainers.image.created="2024-11-14T12:50:39Z" LABEL org.opencontainers.image.source="https://github.com/suhrig/arriba" -LABEL org.opencontainers.image.revision="dd75d6f397b5865acc31c39e7b613f8fb2989757" +LABEL org.opencontainers.image.revision="402ad6a813c0d0b141bbf8f9a3aab9c270a74812" LABEL org.opencontainers.image.version="add_sgdemux" VIASHDOCKER diff --git a/target/executable/bbmap/bbmap_bbsplit/.config.vsh.yaml b/target/executable/bbmap/bbmap_bbsplit/.config.vsh.yaml index b79fc4f1..3f3d3443 100644 --- a/target/executable/bbmap/bbmap_bbsplit/.config.vsh.yaml +++ b/target/executable/bbmap/bbmap_bbsplit/.config.vsh.yaml @@ -368,9 +368,9 @@ build_info: output: "target/executable/bbmap/bbmap_bbsplit" executable: "target/executable/bbmap/bbmap_bbsplit/bbmap_bbsplit" viash_version: "0.9.0" - git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757" - git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox" - git_tag: "v0.2.0-26-gdd75d6f" + git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812" + git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-27-g402ad6a" package_config: name: "biobox" version: "add_sgdemux" diff --git a/target/executable/bbmap/bbmap_bbsplit/bbmap_bbsplit b/target/executable/bbmap/bbmap_bbsplit/bbmap_bbsplit index 78261fe4..ac8a41c9 100755 --- a/target/executable/bbmap/bbmap_bbsplit/bbmap_bbsplit +++ b/target/executable/bbmap/bbmap_bbsplit/bbmap_bbsplit @@ -600,9 +600,9 @@ cp -r bbmap/* /usr/local/bin RUN bbsplit.sh --version 2>&1 | awk '/BBMap version/{print "BBMAP:", $NF}' > /var/software_versions.txt LABEL org.opencontainers.image.description="Companion container for running component bbmap bbmap_bbsplit" -LABEL org.opencontainers.image.created="2024-11-13T14:00:25Z" +LABEL org.opencontainers.image.created="2024-11-14T12:50:39Z" LABEL org.opencontainers.image.source="https://github.com/BioInfoTools/BBMap/blob/master/sh/bbsplit.sh" -LABEL org.opencontainers.image.revision="dd75d6f397b5865acc31c39e7b613f8fb2989757" +LABEL org.opencontainers.image.revision="402ad6a813c0d0b141bbf8f9a3aab9c270a74812" LABEL org.opencontainers.image.version="add_sgdemux" VIASHDOCKER diff --git a/target/executable/bcftools/bcftools_annotate/.config.vsh.yaml b/target/executable/bcftools/bcftools_annotate/.config.vsh.yaml index 84df3c35..17c6fadc 100644 --- a/target/executable/bcftools/bcftools_annotate/.config.vsh.yaml +++ b/target/executable/bcftools/bcftools_annotate/.config.vsh.yaml @@ -469,9 +469,9 @@ build_info: output: "target/executable/bcftools/bcftools_annotate" executable: "target/executable/bcftools/bcftools_annotate/bcftools_annotate" viash_version: "0.9.0" - git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757" - git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox" - git_tag: "v0.2.0-26-gdd75d6f" + git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812" + git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-27-g402ad6a" package_config: name: "biobox" version: "add_sgdemux" diff --git a/target/executable/bcftools/bcftools_annotate/bcftools_annotate b/target/executable/bcftools/bcftools_annotate/bcftools_annotate index 09d5d9ea..45dc5f9d 100755 --- a/target/executable/bcftools/bcftools_annotate/bcftools_annotate +++ b/target/executable/bcftools/bcftools_annotate/bcftools_annotate @@ -650,9 +650,9 @@ RUN echo "bcftools: \"$(bcftools --version | grep 'bcftools' | sed -n 's/^bcftoo LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo" LABEL org.opencontainers.image.description="Companion container for running component bcftools bcftools_annotate" -LABEL org.opencontainers.image.created="2024-11-13T14:00:34Z" +LABEL org.opencontainers.image.created="2024-11-14T12:50:48Z" LABEL org.opencontainers.image.source="https://github.com/samtools/bcftools" -LABEL org.opencontainers.image.revision="dd75d6f397b5865acc31c39e7b613f8fb2989757" +LABEL org.opencontainers.image.revision="402ad6a813c0d0b141bbf8f9a3aab9c270a74812" LABEL org.opencontainers.image.version="add_sgdemux" VIASHDOCKER diff --git a/target/executable/bcftools/bcftools_concat/.config.vsh.yaml b/target/executable/bcftools/bcftools_concat/.config.vsh.yaml index 2fde2d1c..152762ad 100644 --- a/target/executable/bcftools/bcftools_concat/.config.vsh.yaml +++ b/target/executable/bcftools/bcftools_concat/.config.vsh.yaml @@ -335,9 +335,9 @@ build_info: output: "target/executable/bcftools/bcftools_concat" executable: "target/executable/bcftools/bcftools_concat/bcftools_concat" viash_version: "0.9.0" - git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757" - git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox" - git_tag: "v0.2.0-26-gdd75d6f" + git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812" + git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-27-g402ad6a" package_config: name: "biobox" version: "add_sgdemux" diff --git a/target/executable/bcftools/bcftools_concat/bcftools_concat b/target/executable/bcftools/bcftools_concat/bcftools_concat index 5c8675e7..504d7e32 100755 --- a/target/executable/bcftools/bcftools_concat/bcftools_concat +++ b/target/executable/bcftools/bcftools_concat/bcftools_concat @@ -566,9 +566,9 @@ RUN echo "bcftools: \"$(bcftools --version | grep 'bcftools' | sed -n 's/^bcftoo LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo" LABEL org.opencontainers.image.description="Companion container for running component bcftools bcftools_concat" -LABEL org.opencontainers.image.created="2024-11-13T14:00:33Z" +LABEL org.opencontainers.image.created="2024-11-14T12:50:47Z" LABEL org.opencontainers.image.source="https://github.com/samtools/bcftools" -LABEL org.opencontainers.image.revision="dd75d6f397b5865acc31c39e7b613f8fb2989757" +LABEL org.opencontainers.image.revision="402ad6a813c0d0b141bbf8f9a3aab9c270a74812" LABEL org.opencontainers.image.version="add_sgdemux" VIASHDOCKER diff --git a/target/executable/bcftools/bcftools_norm/.config.vsh.yaml b/target/executable/bcftools/bcftools_norm/.config.vsh.yaml index fea3823d..363c4655 100644 --- a/target/executable/bcftools/bcftools_norm/.config.vsh.yaml +++ b/target/executable/bcftools/bcftools_norm/.config.vsh.yaml @@ -416,9 +416,9 @@ build_info: output: "target/executable/bcftools/bcftools_norm" executable: "target/executable/bcftools/bcftools_norm/bcftools_norm" viash_version: "0.9.0" - git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757" - git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox" - git_tag: "v0.2.0-26-gdd75d6f" + git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812" + git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-27-g402ad6a" package_config: name: "biobox" version: "add_sgdemux" diff --git a/target/executable/bcftools/bcftools_norm/bcftools_norm b/target/executable/bcftools/bcftools_norm/bcftools_norm index 5621094d..6256c077 100755 --- a/target/executable/bcftools/bcftools_norm/bcftools_norm +++ b/target/executable/bcftools/bcftools_norm/bcftools_norm @@ -589,9 +589,9 @@ RUN echo "bcftools: \"$(bcftools --version | grep 'bcftools' | sed -n 's/^bcftoo LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo" LABEL org.opencontainers.image.description="Companion container for running component bcftools bcftools_norm" -LABEL org.opencontainers.image.created="2024-11-13T14:00:34Z" +LABEL org.opencontainers.image.created="2024-11-14T12:50:47Z" LABEL org.opencontainers.image.source="https://github.com/samtools/bcftools" -LABEL org.opencontainers.image.revision="dd75d6f397b5865acc31c39e7b613f8fb2989757" +LABEL org.opencontainers.image.revision="402ad6a813c0d0b141bbf8f9a3aab9c270a74812" LABEL org.opencontainers.image.version="add_sgdemux" VIASHDOCKER diff --git a/target/executable/bcftools/bcftools_sort/.config.vsh.yaml b/target/executable/bcftools/bcftools_sort/.config.vsh.yaml index fa8e064d..d441ead2 100644 --- a/target/executable/bcftools/bcftools_sort/.config.vsh.yaml +++ b/target/executable/bcftools/bcftools_sort/.config.vsh.yaml @@ -185,9 +185,9 @@ build_info: output: "target/executable/bcftools/bcftools_sort" executable: "target/executable/bcftools/bcftools_sort/bcftools_sort" viash_version: "0.9.0" - git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757" - git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox" - git_tag: "v0.2.0-26-gdd75d6f" + git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812" + git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-27-g402ad6a" package_config: name: "biobox" version: "add_sgdemux" diff --git a/target/executable/bcftools/bcftools_sort/bcftools_sort b/target/executable/bcftools/bcftools_sort/bcftools_sort index ee99c9fb..92669150 100755 --- a/target/executable/bcftools/bcftools_sort/bcftools_sort +++ b/target/executable/bcftools/bcftools_sort/bcftools_sort @@ -483,9 +483,9 @@ RUN echo "bcftools: \"$(bcftools --version | grep 'bcftools' | sed -n 's/^bcftoo LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo" LABEL org.opencontainers.image.description="Companion container for running component bcftools bcftools_sort" -LABEL org.opencontainers.image.created="2024-11-13T14:00:33Z" +LABEL org.opencontainers.image.created="2024-11-14T12:50:46Z" LABEL org.opencontainers.image.source="https://github.com/samtools/bcftools" -LABEL org.opencontainers.image.revision="dd75d6f397b5865acc31c39e7b613f8fb2989757" +LABEL org.opencontainers.image.revision="402ad6a813c0d0b141bbf8f9a3aab9c270a74812" LABEL org.opencontainers.image.version="add_sgdemux" VIASHDOCKER diff --git a/target/executable/bcftools/bcftools_stats/.config.vsh.yaml b/target/executable/bcftools/bcftools_stats/.config.vsh.yaml index 0c8ec68f..e920c496 100644 --- a/target/executable/bcftools/bcftools_stats/.config.vsh.yaml +++ b/target/executable/bcftools/bcftools_stats/.config.vsh.yaml @@ -458,9 +458,9 @@ build_info: output: "target/executable/bcftools/bcftools_stats" executable: "target/executable/bcftools/bcftools_stats/bcftools_stats" viash_version: "0.9.0" - git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757" - git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox" - git_tag: "v0.2.0-26-gdd75d6f" + git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812" + git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-27-g402ad6a" package_config: name: "biobox" version: "add_sgdemux" diff --git a/target/executable/bcftools/bcftools_stats/bcftools_stats b/target/executable/bcftools/bcftools_stats/bcftools_stats index c3378190..26a363fb 100755 --- a/target/executable/bcftools/bcftools_stats/bcftools_stats +++ b/target/executable/bcftools/bcftools_stats/bcftools_stats @@ -626,9 +626,9 @@ RUN echo "bcftools: \"$(bcftools --version | grep 'bcftools' | sed -n 's/^bcftoo LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo" LABEL org.opencontainers.image.description="Companion container for running component bcftools bcftools_stats" -LABEL org.opencontainers.image.created="2024-11-13T14:00:33Z" +LABEL org.opencontainers.image.created="2024-11-14T12:50:47Z" LABEL org.opencontainers.image.source="https://github.com/samtools/bcftools" -LABEL org.opencontainers.image.revision="dd75d6f397b5865acc31c39e7b613f8fb2989757" +LABEL org.opencontainers.image.revision="402ad6a813c0d0b141bbf8f9a3aab9c270a74812" LABEL org.opencontainers.image.version="add_sgdemux" VIASHDOCKER diff --git a/target/executable/bcl_convert/.config.vsh.yaml b/target/executable/bcl_convert/.config.vsh.yaml index 8d47eeb2..4e56c007 100644 --- a/target/executable/bcl_convert/.config.vsh.yaml +++ b/target/executable/bcl_convert/.config.vsh.yaml @@ -418,9 +418,9 @@ build_info: output: "target/executable/bcl_convert" executable: "target/executable/bcl_convert/bcl_convert" viash_version: "0.9.0" - git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757" - git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox" - git_tag: "v0.2.0-26-gdd75d6f" + git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812" + git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-27-g402ad6a" package_config: name: "biobox" version: "add_sgdemux" diff --git a/target/executable/bcl_convert/bcl_convert b/target/executable/bcl_convert/bcl_convert index 687a3179..8e1c1625 100755 --- a/target/executable/bcl_convert/bcl_convert +++ b/target/executable/bcl_convert/bcl_convert @@ -599,9 +599,9 @@ RUN echo "bcl-convert: \"$(bcl-convert -V 2>&1 >/dev/null | sed -n '/Version/ s/ LABEL org.opencontainers.image.authors="Toni Verbeiren, Dorien Roosen" LABEL org.opencontainers.image.description="Companion container for running component bcl_convert" -LABEL org.opencontainers.image.created="2024-11-13T14:00:32Z" +LABEL org.opencontainers.image.created="2024-11-14T12:50:45Z" LABEL org.opencontainers.image.source="https://github.com/viash-hub/biobox" -LABEL org.opencontainers.image.revision="dd75d6f397b5865acc31c39e7b613f8fb2989757" +LABEL org.opencontainers.image.revision="402ad6a813c0d0b141bbf8f9a3aab9c270a74812" LABEL org.opencontainers.image.version="add_sgdemux" VIASHDOCKER diff --git a/target/executable/bd_rhapsody/bd_rhapsody_make_reference/.config.vsh.yaml b/target/executable/bd_rhapsody/bd_rhapsody_make_reference/.config.vsh.yaml index d7e933ff..042cb915 100644 --- a/target/executable/bd_rhapsody/bd_rhapsody_make_reference/.config.vsh.yaml +++ b/target/executable/bd_rhapsody/bd_rhapsody_make_reference/.config.vsh.yaml @@ -274,9 +274,9 @@ build_info: output: "target/executable/bd_rhapsody/bd_rhapsody_make_reference" executable: "target/executable/bd_rhapsody/bd_rhapsody_make_reference/bd_rhapsody_make_reference" viash_version: "0.9.0" - git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757" - git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox" - git_tag: "v0.2.0-26-gdd75d6f" + git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812" + git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-27-g402ad6a" package_config: name: "biobox" version: "add_sgdemux" diff --git a/target/executable/bd_rhapsody/bd_rhapsody_make_reference/bd_rhapsody_make_reference b/target/executable/bd_rhapsody/bd_rhapsody_make_reference/bd_rhapsody_make_reference index 0c669f84..98692371 100755 --- a/target/executable/bd_rhapsody/bd_rhapsody_make_reference/bd_rhapsody_make_reference +++ b/target/executable/bd_rhapsody/bd_rhapsody_make_reference/bd_rhapsody_make_reference @@ -554,9 +554,9 @@ RUN VERSION=$(ls -v /var/bd_rhapsody_cwl | grep '^v' | sed 's#v##' | tail -1) RUN echo "bdgenomics/rhapsody: \"$VERSION\"" > /var/software_versions.txt LABEL org.opencontainers.image.authors="Robrecht Cannoodt, Weiwei Schultz" LABEL org.opencontainers.image.description="Companion container for running component bd_rhapsody bd_rhapsody_make_reference" -LABEL org.opencontainers.image.created="2024-11-13T14:00:35Z" +LABEL org.opencontainers.image.created="2024-11-14T12:50:49Z" LABEL org.opencontainers.image.source="https://bitbucket.org/CRSwDev/cwl/src/master/v2.2.1/Extra_Utilities/" -LABEL org.opencontainers.image.revision="dd75d6f397b5865acc31c39e7b613f8fb2989757" +LABEL org.opencontainers.image.revision="402ad6a813c0d0b141bbf8f9a3aab9c270a74812" LABEL org.opencontainers.image.version="add_sgdemux" VIASHDOCKER diff --git a/target/executable/bd_rhapsody/bd_rhapsody_sequence_analysis/.config.vsh.yaml b/target/executable/bd_rhapsody/bd_rhapsody_sequence_analysis/.config.vsh.yaml index c00f3cf1..61dfd611 100644 --- a/target/executable/bd_rhapsody/bd_rhapsody_sequence_analysis/.config.vsh.yaml +++ b/target/executable/bd_rhapsody/bd_rhapsody_sequence_analysis/.config.vsh.yaml @@ -1115,9 +1115,9 @@ build_info: output: "target/executable/bd_rhapsody/bd_rhapsody_sequence_analysis" executable: "target/executable/bd_rhapsody/bd_rhapsody_sequence_analysis/bd_rhapsody_sequence_analysis" viash_version: "0.9.0" - git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757" - git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox" - git_tag: "v0.2.0-26-gdd75d6f" + git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812" + git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-27-g402ad6a" package_config: name: "biobox" version: "add_sgdemux" diff --git a/target/executable/bd_rhapsody/bd_rhapsody_sequence_analysis/bd_rhapsody_sequence_analysis b/target/executable/bd_rhapsody/bd_rhapsody_sequence_analysis/bd_rhapsody_sequence_analysis index 93368b3c..ac8e014a 100755 --- a/target/executable/bd_rhapsody/bd_rhapsody_sequence_analysis/bd_rhapsody_sequence_analysis +++ b/target/executable/bd_rhapsody/bd_rhapsody_sequence_analysis/bd_rhapsody_sequence_analysis @@ -954,9 +954,9 @@ RUN VERSION=$(ls -v /var/bd_rhapsody_cwl | grep '^v' | sed 's#v##' | tail -1) RUN echo "bdgenomics/rhapsody: \"$VERSION\"" > /var/software_versions.txt LABEL org.opencontainers.image.authors="Robrecht Cannoodt, Weiwei Schultz" LABEL org.opencontainers.image.description="Companion container for running component bd_rhapsody bd_rhapsody_sequence_analysis" -LABEL org.opencontainers.image.created="2024-11-13T14:00:35Z" +LABEL org.opencontainers.image.created="2024-11-14T12:50:48Z" LABEL org.opencontainers.image.source="https://bitbucket.org/CRSwDev/cwl/src/master/v2.2.1" -LABEL org.opencontainers.image.revision="dd75d6f397b5865acc31c39e7b613f8fb2989757" +LABEL org.opencontainers.image.revision="402ad6a813c0d0b141bbf8f9a3aab9c270a74812" LABEL org.opencontainers.image.version="add_sgdemux" VIASHDOCKER diff --git a/target/executable/bedtools/bedtools_bamtobed/.config.vsh.yaml b/target/executable/bedtools/bedtools_bamtobed/.config.vsh.yaml index 7b17a0e2..0ced2a68 100644 --- a/target/executable/bedtools/bedtools_bamtobed/.config.vsh.yaml +++ b/target/executable/bedtools/bedtools_bamtobed/.config.vsh.yaml @@ -235,9 +235,9 @@ build_info: output: "target/executable/bedtools/bedtools_bamtobed" executable: "target/executable/bedtools/bedtools_bamtobed/bedtools_bamtobed" viash_version: "0.9.0" - git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757" - git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox" - git_tag: "v0.2.0-26-gdd75d6f" + git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812" + git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-27-g402ad6a" package_config: name: "biobox" version: "add_sgdemux" diff --git a/target/executable/bedtools/bedtools_bamtobed/bedtools_bamtobed b/target/executable/bedtools/bedtools_bamtobed/bedtools_bamtobed index 3315da15..b9e6f751 100755 --- a/target/executable/bedtools/bedtools_bamtobed/bedtools_bamtobed +++ b/target/executable/bedtools/bedtools_bamtobed/bedtools_bamtobed @@ -522,9 +522,9 @@ RUN echo "bedtools: \"$(bedtools --version | sed -n 's/^bedtools //p')\"" > /var LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo" LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_bamtobed" -LABEL org.opencontainers.image.created="2024-11-13T14:00:32Z" +LABEL org.opencontainers.image.created="2024-11-14T12:50:46Z" LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2" -LABEL org.opencontainers.image.revision="dd75d6f397b5865acc31c39e7b613f8fb2989757" +LABEL org.opencontainers.image.revision="402ad6a813c0d0b141bbf8f9a3aab9c270a74812" LABEL org.opencontainers.image.version="add_sgdemux" VIASHDOCKER diff --git a/target/executable/bedtools/bedtools_bamtofastq/.config.vsh.yaml b/target/executable/bedtools/bedtools_bamtofastq/.config.vsh.yaml index 9d5c2a04..bc337d42 100644 --- a/target/executable/bedtools/bedtools_bamtofastq/.config.vsh.yaml +++ b/target/executable/bedtools/bedtools_bamtofastq/.config.vsh.yaml @@ -187,9 +187,9 @@ build_info: output: "target/executable/bedtools/bedtools_bamtofastq" executable: "target/executable/bedtools/bedtools_bamtofastq/bedtools_bamtofastq" viash_version: "0.9.0" - git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757" - git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox" - git_tag: "v0.2.0-26-gdd75d6f" + git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812" + git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-27-g402ad6a" package_config: name: "biobox" version: "add_sgdemux" diff --git a/target/executable/bedtools/bedtools_bamtofastq/bedtools_bamtofastq b/target/executable/bedtools/bedtools_bamtofastq/bedtools_bamtofastq index 829895b6..b3560816 100755 --- a/target/executable/bedtools/bedtools_bamtofastq/bedtools_bamtofastq +++ b/target/executable/bedtools/bedtools_bamtofastq/bedtools_bamtofastq @@ -483,9 +483,9 @@ RUN echo "bedtools: \"$(bedtools --version | sed -n 's/^bedtools //p')\"" > /var LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo" LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_bamtofastq" -LABEL org.opencontainers.image.created="2024-11-13T14:00:33Z" +LABEL org.opencontainers.image.created="2024-11-14T12:50:47Z" LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2" -LABEL org.opencontainers.image.revision="dd75d6f397b5865acc31c39e7b613f8fb2989757" +LABEL org.opencontainers.image.revision="402ad6a813c0d0b141bbf8f9a3aab9c270a74812" LABEL org.opencontainers.image.version="add_sgdemux" VIASHDOCKER diff --git a/target/executable/bedtools/bedtools_bed12tobed6/.config.vsh.yaml b/target/executable/bedtools/bedtools_bed12tobed6/.config.vsh.yaml index 9ed10b8a..df117465 100644 --- a/target/executable/bedtools/bedtools_bed12tobed6/.config.vsh.yaml +++ b/target/executable/bedtools/bedtools_bed12tobed6/.config.vsh.yaml @@ -176,9 +176,9 @@ build_info: output: "target/executable/bedtools/bedtools_bed12tobed6" executable: "target/executable/bedtools/bedtools_bed12tobed6/bedtools_bed12tobed6" viash_version: "0.9.0" - git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757" - git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox" - git_tag: "v0.2.0-26-gdd75d6f" + git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812" + git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-27-g402ad6a" package_config: name: "biobox" version: "add_sgdemux" diff --git a/target/executable/bedtools/bedtools_bed12tobed6/bedtools_bed12tobed6 b/target/executable/bedtools/bedtools_bed12tobed6/bedtools_bed12tobed6 index 13954acd..827aa2bd 100755 --- a/target/executable/bedtools/bedtools_bed12tobed6/bedtools_bed12tobed6 +++ b/target/executable/bedtools/bedtools_bed12tobed6/bedtools_bed12tobed6 @@ -480,9 +480,9 @@ RUN echo "bedtools: \"$(bedtools --version | sed -n 's/^bedtools //p')\"" > /var LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo" LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_bed12tobed6" -LABEL org.opencontainers.image.created="2024-11-13T14:00:34Z" +LABEL org.opencontainers.image.created="2024-11-14T12:50:48Z" LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2" -LABEL org.opencontainers.image.revision="dd75d6f397b5865acc31c39e7b613f8fb2989757" +LABEL org.opencontainers.image.revision="402ad6a813c0d0b141bbf8f9a3aab9c270a74812" LABEL org.opencontainers.image.version="add_sgdemux" VIASHDOCKER diff --git a/target/executable/bedtools/bedtools_bedtobam/.config.vsh.yaml b/target/executable/bedtools/bedtools_bedtobam/.config.vsh.yaml index fbc38a4b..c6b5cb3e 100644 --- a/target/executable/bedtools/bedtools_bedtobam/.config.vsh.yaml +++ b/target/executable/bedtools/bedtools_bedtobam/.config.vsh.yaml @@ -214,9 +214,9 @@ build_info: output: "target/executable/bedtools/bedtools_bedtobam" executable: "target/executable/bedtools/bedtools_bedtobam/bedtools_bedtobam" viash_version: "0.9.0" - git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757" - git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox" - git_tag: "v0.2.0-26-gdd75d6f" + git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812" + git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-27-g402ad6a" package_config: name: "biobox" version: "add_sgdemux" diff --git a/target/executable/bedtools/bedtools_bedtobam/bedtools_bedtobam b/target/executable/bedtools/bedtools_bedtobam/bedtools_bedtobam index 82d2a40a..e0702ab5 100755 --- a/target/executable/bedtools/bedtools_bedtobam/bedtools_bedtobam +++ b/target/executable/bedtools/bedtools_bedtobam/bedtools_bedtobam @@ -496,9 +496,9 @@ RUN echo "bedtools: \"$(bedtools --version | sed -n 's/^bedtools //p')\"" > /var LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo" LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_bedtobam" -LABEL org.opencontainers.image.created="2024-11-13T14:00:35Z" +LABEL org.opencontainers.image.created="2024-11-14T12:50:48Z" LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2" -LABEL org.opencontainers.image.revision="dd75d6f397b5865acc31c39e7b613f8fb2989757" +LABEL org.opencontainers.image.revision="402ad6a813c0d0b141bbf8f9a3aab9c270a74812" LABEL org.opencontainers.image.version="add_sgdemux" VIASHDOCKER diff --git a/target/executable/bedtools/bedtools_genomecov/.config.vsh.yaml b/target/executable/bedtools/bedtools_genomecov/.config.vsh.yaml index c6ca55b6..34b7875f 100644 --- a/target/executable/bedtools/bedtools_genomecov/.config.vsh.yaml +++ b/target/executable/bedtools/bedtools_genomecov/.config.vsh.yaml @@ -337,9 +337,9 @@ build_info: output: "target/executable/bedtools/bedtools_genomecov" executable: "target/executable/bedtools/bedtools_genomecov/bedtools_genomecov" viash_version: "0.9.0" - git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757" - git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox" - git_tag: "v0.2.0-26-gdd75d6f" + git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812" + git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-27-g402ad6a" package_config: name: "biobox" version: "add_sgdemux" diff --git a/target/executable/bedtools/bedtools_genomecov/bedtools_genomecov b/target/executable/bedtools/bedtools_genomecov/bedtools_genomecov index 94b2e419..3c6a7451 100755 --- a/target/executable/bedtools/bedtools_genomecov/bedtools_genomecov +++ b/target/executable/bedtools/bedtools_genomecov/bedtools_genomecov @@ -591,9 +591,9 @@ RUN echo "bedtools: \"$(bedtools --version | sed -n 's/^bedtools //p')\"" > /var LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo" LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_genomecov" -LABEL org.opencontainers.image.created="2024-11-13T14:00:35Z" +LABEL org.opencontainers.image.created="2024-11-14T12:50:48Z" LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2" -LABEL org.opencontainers.image.revision="dd75d6f397b5865acc31c39e7b613f8fb2989757" +LABEL org.opencontainers.image.revision="402ad6a813c0d0b141bbf8f9a3aab9c270a74812" LABEL org.opencontainers.image.version="add_sgdemux" VIASHDOCKER diff --git a/target/executable/bedtools/bedtools_getfasta/.config.vsh.yaml b/target/executable/bedtools/bedtools_getfasta/.config.vsh.yaml index 100004b5..379a7ee7 100644 --- a/target/executable/bedtools/bedtools_getfasta/.config.vsh.yaml +++ b/target/executable/bedtools/bedtools_getfasta/.config.vsh.yaml @@ -232,9 +232,9 @@ build_info: output: "target/executable/bedtools/bedtools_getfasta" executable: "target/executable/bedtools/bedtools_getfasta/bedtools_getfasta" viash_version: "0.9.0" - git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757" - git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox" - git_tag: "v0.2.0-26-gdd75d6f" + git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812" + git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-27-g402ad6a" package_config: name: "biobox" version: "add_sgdemux" diff --git a/target/executable/bedtools/bedtools_getfasta/bedtools_getfasta b/target/executable/bedtools/bedtools_getfasta/bedtools_getfasta index 3f059c5a..678ffcb5 100755 --- a/target/executable/bedtools/bedtools_getfasta/bedtools_getfasta +++ b/target/executable/bedtools/bedtools_getfasta/bedtools_getfasta @@ -526,9 +526,9 @@ RUN echo "bedtools: \"$(bedtools --version | sed -n 's/^bedtools //p')\"" > /var LABEL org.opencontainers.image.authors="Dries Schaumont" LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_getfasta" -LABEL org.opencontainers.image.created="2024-11-13T14:00:33Z" +LABEL org.opencontainers.image.created="2024-11-14T12:50:46Z" LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2" -LABEL org.opencontainers.image.revision="dd75d6f397b5865acc31c39e7b613f8fb2989757" +LABEL org.opencontainers.image.revision="402ad6a813c0d0b141bbf8f9a3aab9c270a74812" LABEL org.opencontainers.image.version="add_sgdemux" VIASHDOCKER diff --git a/target/executable/bedtools/bedtools_groupby/.config.vsh.yaml b/target/executable/bedtools/bedtools_groupby/.config.vsh.yaml index ceb63524..77159bf4 100644 --- a/target/executable/bedtools/bedtools_groupby/.config.vsh.yaml +++ b/target/executable/bedtools/bedtools_groupby/.config.vsh.yaml @@ -273,9 +273,9 @@ build_info: output: "target/executable/bedtools/bedtools_groupby" executable: "target/executable/bedtools/bedtools_groupby/bedtools_groupby" viash_version: "0.9.0" - git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757" - git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox" - git_tag: "v0.2.0-26-gdd75d6f" + git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812" + git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-27-g402ad6a" package_config: name: "biobox" version: "add_sgdemux" diff --git a/target/executable/bedtools/bedtools_groupby/bedtools_groupby b/target/executable/bedtools/bedtools_groupby/bedtools_groupby index d5089bde..985410c9 100755 --- a/target/executable/bedtools/bedtools_groupby/bedtools_groupby +++ b/target/executable/bedtools/bedtools_groupby/bedtools_groupby @@ -552,9 +552,9 @@ RUN echo "bedtools: \"$(bedtools --version | sed -n 's/^bedtools //p')\"" > /var LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo" LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_groupby" -LABEL org.opencontainers.image.created="2024-11-13T14:00:32Z" +LABEL org.opencontainers.image.created="2024-11-14T12:50:46Z" LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2" -LABEL org.opencontainers.image.revision="dd75d6f397b5865acc31c39e7b613f8fb2989757" +LABEL org.opencontainers.image.revision="402ad6a813c0d0b141bbf8f9a3aab9c270a74812" LABEL org.opencontainers.image.version="add_sgdemux" VIASHDOCKER diff --git a/target/executable/bedtools/bedtools_intersect/.config.vsh.yaml b/target/executable/bedtools/bedtools_intersect/.config.vsh.yaml index 9d518281..3de59d89 100644 --- a/target/executable/bedtools/bedtools_intersect/.config.vsh.yaml +++ b/target/executable/bedtools/bedtools_intersect/.config.vsh.yaml @@ -410,9 +410,9 @@ build_info: output: "target/executable/bedtools/bedtools_intersect" executable: "target/executable/bedtools/bedtools_intersect/bedtools_intersect" viash_version: "0.9.0" - git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757" - git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox" - git_tag: "v0.2.0-26-gdd75d6f" + git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812" + git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-27-g402ad6a" package_config: name: "biobox" version: "add_sgdemux" diff --git a/target/executable/bedtools/bedtools_intersect/bedtools_intersect b/target/executable/bedtools/bedtools_intersect/bedtools_intersect index 07a24950..208a7190 100755 --- a/target/executable/bedtools/bedtools_intersect/bedtools_intersect +++ b/target/executable/bedtools/bedtools_intersect/bedtools_intersect @@ -633,9 +633,9 @@ RUN echo "bedtools: \"$(bedtools --version | sed -n 's/^bedtools //p')\"" > /var LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo" LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_intersect" -LABEL org.opencontainers.image.created="2024-11-13T14:00:34Z" +LABEL org.opencontainers.image.created="2024-11-14T12:50:47Z" LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2" -LABEL org.opencontainers.image.revision="dd75d6f397b5865acc31c39e7b613f8fb2989757" +LABEL org.opencontainers.image.revision="402ad6a813c0d0b141bbf8f9a3aab9c270a74812" LABEL org.opencontainers.image.version="add_sgdemux" VIASHDOCKER diff --git a/target/executable/bedtools/bedtools_links/.config.vsh.yaml b/target/executable/bedtools/bedtools_links/.config.vsh.yaml index ccbea519..a9c1d6a5 100644 --- a/target/executable/bedtools/bedtools_links/.config.vsh.yaml +++ b/target/executable/bedtools/bedtools_links/.config.vsh.yaml @@ -210,9 +210,9 @@ build_info: output: "target/executable/bedtools/bedtools_links" executable: "target/executable/bedtools/bedtools_links/bedtools_links" viash_version: "0.9.0" - git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757" - git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox" - git_tag: "v0.2.0-26-gdd75d6f" + git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812" + git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-27-g402ad6a" package_config: name: "biobox" version: "add_sgdemux" diff --git a/target/executable/bedtools/bedtools_links/bedtools_links b/target/executable/bedtools/bedtools_links/bedtools_links index 095bc331..1063579c 100755 --- a/target/executable/bedtools/bedtools_links/bedtools_links +++ b/target/executable/bedtools/bedtools_links/bedtools_links @@ -500,9 +500,9 @@ RUN echo "bedtools: \"$(bedtools --version | sed -n 's/^bedtools //p')\"" > /var LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo" LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_links" -LABEL org.opencontainers.image.created="2024-11-13T14:00:34Z" +LABEL org.opencontainers.image.created="2024-11-14T12:50:48Z" LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2" -LABEL org.opencontainers.image.revision="dd75d6f397b5865acc31c39e7b613f8fb2989757" +LABEL org.opencontainers.image.revision="402ad6a813c0d0b141bbf8f9a3aab9c270a74812" LABEL org.opencontainers.image.version="add_sgdemux" VIASHDOCKER diff --git a/target/executable/bedtools/bedtools_merge/.config.vsh.yaml b/target/executable/bedtools/bedtools_merge/.config.vsh.yaml index 83059269..a5df5929 100644 --- a/target/executable/bedtools/bedtools_merge/.config.vsh.yaml +++ b/target/executable/bedtools/bedtools_merge/.config.vsh.yaml @@ -279,9 +279,9 @@ build_info: output: "target/executable/bedtools/bedtools_merge" executable: "target/executable/bedtools/bedtools_merge/bedtools_merge" viash_version: "0.9.0" - git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757" - git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox" - git_tag: "v0.2.0-26-gdd75d6f" + git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812" + git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-27-g402ad6a" package_config: name: "biobox" version: "add_sgdemux" diff --git a/target/executable/bedtools/bedtools_merge/bedtools_merge b/target/executable/bedtools/bedtools_merge/bedtools_merge index 82a2da0a..6dc35bb4 100755 --- a/target/executable/bedtools/bedtools_merge/bedtools_merge +++ b/target/executable/bedtools/bedtools_merge/bedtools_merge @@ -558,9 +558,9 @@ RUN echo "bedtools: \"$(bedtools --version | sed -n 's/^bedtools //p')\"" > /var LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo" LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_merge" -LABEL org.opencontainers.image.created="2024-11-13T14:00:35Z" +LABEL org.opencontainers.image.created="2024-11-14T12:50:49Z" LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2" -LABEL org.opencontainers.image.revision="dd75d6f397b5865acc31c39e7b613f8fb2989757" +LABEL org.opencontainers.image.revision="402ad6a813c0d0b141bbf8f9a3aab9c270a74812" LABEL org.opencontainers.image.version="add_sgdemux" VIASHDOCKER diff --git a/target/executable/bedtools/bedtools_sort/.config.vsh.yaml b/target/executable/bedtools/bedtools_sort/.config.vsh.yaml index 6bdc5a8a..a4ac0a06 100644 --- a/target/executable/bedtools/bedtools_sort/.config.vsh.yaml +++ b/target/executable/bedtools/bedtools_sort/.config.vsh.yaml @@ -222,9 +222,9 @@ build_info: output: "target/executable/bedtools/bedtools_sort" executable: "target/executable/bedtools/bedtools_sort/bedtools_sort" viash_version: "0.9.0" - git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757" - git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox" - git_tag: "v0.2.0-26-gdd75d6f" + git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812" + git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-27-g402ad6a" package_config: name: "biobox" version: "add_sgdemux" diff --git a/target/executable/bedtools/bedtools_sort/bedtools_sort b/target/executable/bedtools/bedtools_sort/bedtools_sort index 08f13b28..99c1b95b 100755 --- a/target/executable/bedtools/bedtools_sort/bedtools_sort +++ b/target/executable/bedtools/bedtools_sort/bedtools_sort @@ -509,9 +509,9 @@ RUN echo "bedtools: \"$(bedtools --version | sed -n 's/^bedtools //p')\"" > /var LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo" LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_sort" -LABEL org.opencontainers.image.created="2024-11-13T14:00:33Z" +LABEL org.opencontainers.image.created="2024-11-14T12:50:47Z" LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2" -LABEL org.opencontainers.image.revision="dd75d6f397b5865acc31c39e7b613f8fb2989757" +LABEL org.opencontainers.image.revision="402ad6a813c0d0b141bbf8f9a3aab9c270a74812" LABEL org.opencontainers.image.version="add_sgdemux" VIASHDOCKER diff --git a/target/executable/busco/busco_download_datasets/.config.vsh.yaml b/target/executable/busco/busco_download_datasets/.config.vsh.yaml index feff50b8..e1e5aca3 100644 --- a/target/executable/busco/busco_download_datasets/.config.vsh.yaml +++ b/target/executable/busco/busco_download_datasets/.config.vsh.yaml @@ -158,9 +158,9 @@ build_info: output: "target/executable/busco/busco_download_datasets" executable: "target/executable/busco/busco_download_datasets/busco_download_datasets" viash_version: "0.9.0" - git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757" - git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox" - git_tag: "v0.2.0-26-gdd75d6f" + git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812" + git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-27-g402ad6a" package_config: name: "biobox" version: "add_sgdemux" diff --git a/target/executable/busco/busco_download_datasets/busco_download_datasets b/target/executable/busco/busco_download_datasets/busco_download_datasets index cae7eb81..ab178b5d 100755 --- a/target/executable/busco/busco_download_datasets/busco_download_datasets +++ b/target/executable/busco/busco_download_datasets/busco_download_datasets @@ -475,9 +475,9 @@ RUN busco --version | sed 's/BUSCO\s\(.*\)/busco: "\1"/' > /var/software_version LABEL org.opencontainers.image.authors="Dorien Roosen" LABEL org.opencontainers.image.description="Companion container for running component busco busco_download_datasets" -LABEL org.opencontainers.image.created="2024-11-13T14:00:31Z" +LABEL org.opencontainers.image.created="2024-11-14T12:50:45Z" LABEL org.opencontainers.image.source="https://gitlab.com/ezlab/busco" -LABEL org.opencontainers.image.revision="dd75d6f397b5865acc31c39e7b613f8fb2989757" +LABEL org.opencontainers.image.revision="402ad6a813c0d0b141bbf8f9a3aab9c270a74812" LABEL org.opencontainers.image.version="add_sgdemux" VIASHDOCKER diff --git a/target/executable/busco/busco_list_datasets/.config.vsh.yaml b/target/executable/busco/busco_list_datasets/.config.vsh.yaml index 515c398e..3410afdb 100644 --- a/target/executable/busco/busco_list_datasets/.config.vsh.yaml +++ b/target/executable/busco/busco_list_datasets/.config.vsh.yaml @@ -145,9 +145,9 @@ build_info: output: "target/executable/busco/busco_list_datasets" executable: "target/executable/busco/busco_list_datasets/busco_list_datasets" viash_version: "0.9.0" - git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757" - git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox" - git_tag: "v0.2.0-26-gdd75d6f" + git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812" + git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-27-g402ad6a" package_config: name: "biobox" version: "add_sgdemux" diff --git a/target/executable/busco/busco_list_datasets/busco_list_datasets b/target/executable/busco/busco_list_datasets/busco_list_datasets index 8c6d0292..5e6d581d 100755 --- a/target/executable/busco/busco_list_datasets/busco_list_datasets +++ b/target/executable/busco/busco_list_datasets/busco_list_datasets @@ -465,9 +465,9 @@ RUN busco --version | sed 's/BUSCO\s\(.*\)/busco: "\1"/' > /var/software_version LABEL org.opencontainers.image.authors="Dorien Roosen" LABEL org.opencontainers.image.description="Companion container for running component busco busco_list_datasets" -LABEL org.opencontainers.image.created="2024-11-13T14:00:31Z" +LABEL org.opencontainers.image.created="2024-11-14T12:50:44Z" LABEL org.opencontainers.image.source="https://gitlab.com/ezlab/busco" -LABEL org.opencontainers.image.revision="dd75d6f397b5865acc31c39e7b613f8fb2989757" +LABEL org.opencontainers.image.revision="402ad6a813c0d0b141bbf8f9a3aab9c270a74812" LABEL org.opencontainers.image.version="add_sgdemux" VIASHDOCKER diff --git a/target/executable/busco/busco_run/.config.vsh.yaml b/target/executable/busco/busco_run/.config.vsh.yaml index f3534f5c..1751e56f 100644 --- a/target/executable/busco/busco_run/.config.vsh.yaml +++ b/target/executable/busco/busco_run/.config.vsh.yaml @@ -423,9 +423,9 @@ build_info: output: "target/executable/busco/busco_run" executable: "target/executable/busco/busco_run/busco_run" viash_version: "0.9.0" - git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757" - git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox" - git_tag: "v0.2.0-26-gdd75d6f" + git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812" + git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-27-g402ad6a" package_config: name: "biobox" version: "add_sgdemux" diff --git a/target/executable/busco/busco_run/busco_run b/target/executable/busco/busco_run/busco_run index efee7cde..8a37ff18 100755 --- a/target/executable/busco/busco_run/busco_run +++ b/target/executable/busco/busco_run/busco_run @@ -632,9 +632,9 @@ RUN busco --version | sed 's/BUSCO\s\(.*\)/busco: "\1"/' > /var/software_version LABEL org.opencontainers.image.authors="Dorien Roosen" LABEL org.opencontainers.image.description="Companion container for running component busco busco_run" -LABEL org.opencontainers.image.created="2024-11-13T14:00:31Z" +LABEL org.opencontainers.image.created="2024-11-14T12:50:45Z" LABEL org.opencontainers.image.source="https://gitlab.com/ezlab/busco" -LABEL org.opencontainers.image.revision="dd75d6f397b5865acc31c39e7b613f8fb2989757" +LABEL org.opencontainers.image.revision="402ad6a813c0d0b141bbf8f9a3aab9c270a74812" LABEL org.opencontainers.image.version="add_sgdemux" VIASHDOCKER diff --git a/target/executable/cellranger/cellranger_mkref/.config.vsh.yaml b/target/executable/cellranger/cellranger_mkref/.config.vsh.yaml index 4cef4e38..4bdc31e9 100644 --- a/target/executable/cellranger/cellranger_mkref/.config.vsh.yaml +++ b/target/executable/cellranger/cellranger_mkref/.config.vsh.yaml @@ -195,9 +195,9 @@ build_info: output: "target/executable/cellranger/cellranger_mkref" executable: "target/executable/cellranger/cellranger_mkref/cellranger_mkref" viash_version: "0.9.0" - git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757" - git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox" - git_tag: "v0.2.0-26-gdd75d6f" + git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812" + git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-27-g402ad6a" package_config: name: "biobox" version: "add_sgdemux" diff --git a/target/executable/cellranger/cellranger_mkref/cellranger_mkref b/target/executable/cellranger/cellranger_mkref/cellranger_mkref index 6d7f2be5..3bedaf53 100755 --- a/target/executable/cellranger/cellranger_mkref/cellranger_mkref +++ b/target/executable/cellranger/cellranger_mkref/cellranger_mkref @@ -481,9 +481,9 @@ RUN apt-get update && \ LABEL org.opencontainers.image.authors="Emma Rousseau" LABEL org.opencontainers.image.description="Companion container for running component cellranger cellranger_mkref" -LABEL org.opencontainers.image.created="2024-11-13T14:00:32Z" +LABEL org.opencontainers.image.created="2024-11-14T12:50:45Z" LABEL org.opencontainers.image.source="https://github.com/10XGenomics/cellranger/blob/main/lib/python/cellranger/reference_builder.py" -LABEL org.opencontainers.image.revision="dd75d6f397b5865acc31c39e7b613f8fb2989757" +LABEL org.opencontainers.image.revision="402ad6a813c0d0b141bbf8f9a3aab9c270a74812" LABEL org.opencontainers.image.version="add_sgdemux" VIASHDOCKER diff --git a/target/executable/cutadapt/.config.vsh.yaml b/target/executable/cutadapt/.config.vsh.yaml index 874f3bba..bb34f101 100644 --- a/target/executable/cutadapt/.config.vsh.yaml +++ b/target/executable/cutadapt/.config.vsh.yaml @@ -740,9 +740,9 @@ build_info: output: "target/executable/cutadapt" executable: "target/executable/cutadapt/cutadapt" viash_version: "0.9.0" - git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757" - git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox" - git_tag: "v0.2.0-26-gdd75d6f" + git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812" + git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-27-g402ad6a" package_config: name: "biobox" version: "add_sgdemux" diff --git a/target/executable/cutadapt/cutadapt b/target/executable/cutadapt/cutadapt index 374e20f1..f1cfbaec 100755 --- a/target/executable/cutadapt/cutadapt +++ b/target/executable/cutadapt/cutadapt @@ -831,9 +831,9 @@ RUN cutadapt --version | sed 's/\(.*\)/cutadapt: "\1"/' > /var/software_versions LABEL org.opencontainers.image.authors="Toni Verbeiren" LABEL org.opencontainers.image.description="Companion container for running component cutadapt" -LABEL org.opencontainers.image.created="2024-11-13T14:00:27Z" +LABEL org.opencontainers.image.created="2024-11-14T12:50:40Z" LABEL org.opencontainers.image.source="https://github.com/marcelm/cutadapt" -LABEL org.opencontainers.image.revision="dd75d6f397b5865acc31c39e7b613f8fb2989757" +LABEL org.opencontainers.image.revision="402ad6a813c0d0b141bbf8f9a3aab9c270a74812" LABEL org.opencontainers.image.version="add_sgdemux" VIASHDOCKER diff --git a/target/executable/falco/.config.vsh.yaml b/target/executable/falco/.config.vsh.yaml index b43f1ee8..9cab1f4b 100644 --- a/target/executable/falco/.config.vsh.yaml +++ b/target/executable/falco/.config.vsh.yaml @@ -317,9 +317,9 @@ build_info: output: "target/executable/falco" executable: "target/executable/falco/falco" viash_version: "0.9.0" - git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757" - git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox" - git_tag: "v0.2.0-26-gdd75d6f" + git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812" + git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-27-g402ad6a" package_config: name: "biobox" version: "add_sgdemux" diff --git a/target/executable/falco/falco b/target/executable/falco/falco index 45801b76..6d3f85f5 100755 --- a/target/executable/falco/falco +++ b/target/executable/falco/falco @@ -589,9 +589,9 @@ RUN echo "falco: \"$(falco -v | sed -n 's/^falco //p')\"" > /var/software_versio LABEL org.opencontainers.image.authors="Toni Verbeiren" LABEL org.opencontainers.image.description="Companion container for running component falco" -LABEL org.opencontainers.image.created="2024-11-13T14:00:24Z" +LABEL org.opencontainers.image.created="2024-11-14T12:50:37Z" LABEL org.opencontainers.image.source="https://github.com/smithlabcode/falco" -LABEL org.opencontainers.image.revision="dd75d6f397b5865acc31c39e7b613f8fb2989757" +LABEL org.opencontainers.image.revision="402ad6a813c0d0b141bbf8f9a3aab9c270a74812" LABEL org.opencontainers.image.version="add_sgdemux" VIASHDOCKER diff --git a/target/executable/fastp/.config.vsh.yaml b/target/executable/fastp/.config.vsh.yaml index effbf686..9852901d 100644 --- a/target/executable/fastp/.config.vsh.yaml +++ b/target/executable/fastp/.config.vsh.yaml @@ -1083,9 +1083,9 @@ build_info: output: "target/executable/fastp" executable: "target/executable/fastp/fastp" viash_version: "0.9.0" - git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757" - git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox" - git_tag: "v0.2.0-26-gdd75d6f" + git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812" + git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-27-g402ad6a" package_config: name: "biobox" version: "add_sgdemux" diff --git a/target/executable/fastp/fastp b/target/executable/fastp/fastp index c76d223d..998e4c12 100755 --- a/target/executable/fastp/fastp +++ b/target/executable/fastp/fastp @@ -1028,9 +1028,9 @@ RUN fastp --version 2>&1 | sed 's# #: "#;s#$#"#' > /var/software_versions.txt LABEL org.opencontainers.image.authors="Robrecht Cannoodt" LABEL org.opencontainers.image.description="Companion container for running component fastp" -LABEL org.opencontainers.image.created="2024-11-13T14:00:35Z" +LABEL org.opencontainers.image.created="2024-11-14T12:50:49Z" LABEL org.opencontainers.image.source="https://github.com/OpenGene/fastp" -LABEL org.opencontainers.image.revision="dd75d6f397b5865acc31c39e7b613f8fb2989757" +LABEL org.opencontainers.image.revision="402ad6a813c0d0b141bbf8f9a3aab9c270a74812" LABEL org.opencontainers.image.version="add_sgdemux" VIASHDOCKER diff --git a/target/executable/fastqc/.config.vsh.yaml b/target/executable/fastqc/.config.vsh.yaml index e0941ae5..ef497861 100644 --- a/target/executable/fastqc/.config.vsh.yaml +++ b/target/executable/fastqc/.config.vsh.yaml @@ -340,9 +340,9 @@ build_info: output: "target/executable/fastqc" executable: "target/executable/fastqc/fastqc" viash_version: "0.9.0" - git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757" - git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox" - git_tag: "v0.2.0-26-gdd75d6f" + git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812" + git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-27-g402ad6a" package_config: name: "biobox" version: "add_sgdemux" diff --git a/target/executable/fastqc/fastqc b/target/executable/fastqc/fastqc index 958e98b6..c9c33dd7 100755 --- a/target/executable/fastqc/fastqc +++ b/target/executable/fastqc/fastqc @@ -601,9 +601,9 @@ RUN echo "fastqc: $(fastqc --version | sed -n 's/^FastQC //p')" > /var/software_ LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo" LABEL org.opencontainers.image.description="Companion container for running component fastqc" -LABEL org.opencontainers.image.created="2024-11-13T14:00:37Z" +LABEL org.opencontainers.image.created="2024-11-14T12:50:50Z" LABEL org.opencontainers.image.source="https://github.com/s-andrews/FastQC" -LABEL org.opencontainers.image.revision="dd75d6f397b5865acc31c39e7b613f8fb2989757" +LABEL org.opencontainers.image.revision="402ad6a813c0d0b141bbf8f9a3aab9c270a74812" LABEL org.opencontainers.image.version="add_sgdemux" VIASHDOCKER diff --git a/target/executable/featurecounts/.config.vsh.yaml b/target/executable/featurecounts/.config.vsh.yaml index 94581dae..929786a4 100644 --- a/target/executable/featurecounts/.config.vsh.yaml +++ b/target/executable/featurecounts/.config.vsh.yaml @@ -645,9 +645,9 @@ build_info: output: "target/executable/featurecounts" executable: "target/executable/featurecounts/featurecounts" viash_version: "0.9.0" - git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757" - git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox" - git_tag: "v0.2.0-26-gdd75d6f" + git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812" + git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-27-g402ad6a" package_config: name: "biobox" version: "add_sgdemux" diff --git a/target/executable/featurecounts/featurecounts b/target/executable/featurecounts/featurecounts index 76d1a6fc..6713be56 100755 --- a/target/executable/featurecounts/featurecounts +++ b/target/executable/featurecounts/featurecounts @@ -754,9 +754,9 @@ RUN featureCounts -v 2>&1 | sed 's/featureCounts v\([0-9.]*\)/featureCounts: \1/ LABEL org.opencontainers.image.authors="Sai Nirmayi Yasa" LABEL org.opencontainers.image.description="Companion container for running component featurecounts" -LABEL org.opencontainers.image.created="2024-11-13T14:00:22Z" +LABEL org.opencontainers.image.created="2024-11-14T12:50:35Z" LABEL org.opencontainers.image.source="https://github.com/ShiLab-Bioinformatics/subread" -LABEL org.opencontainers.image.revision="dd75d6f397b5865acc31c39e7b613f8fb2989757" +LABEL org.opencontainers.image.revision="402ad6a813c0d0b141bbf8f9a3aab9c270a74812" LABEL org.opencontainers.image.version="add_sgdemux" VIASHDOCKER diff --git a/target/executable/fq_subsample/.config.vsh.yaml b/target/executable/fq_subsample/.config.vsh.yaml index 6c13c544..389b5372 100644 --- a/target/executable/fq_subsample/.config.vsh.yaml +++ b/target/executable/fq_subsample/.config.vsh.yaml @@ -190,9 +190,9 @@ build_info: output: "target/executable/fq_subsample" executable: "target/executable/fq_subsample/fq_subsample" viash_version: "0.9.0" - git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757" - git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox" - git_tag: "v0.2.0-26-gdd75d6f" + git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812" + git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-27-g402ad6a" package_config: name: "biobox" version: "add_sgdemux" diff --git a/target/executable/fq_subsample/fq_subsample b/target/executable/fq_subsample/fq_subsample index e4d9d094..688b9fd2 100755 --- a/target/executable/fq_subsample/fq_subsample +++ b/target/executable/fq_subsample/fq_subsample @@ -493,9 +493,9 @@ mv target/release/fq /usr/local/bin/ && \ cd / && rm -rf /fq LABEL org.opencontainers.image.description="Companion container for running component fq_subsample" -LABEL org.opencontainers.image.created="2024-11-13T14:00:30Z" +LABEL org.opencontainers.image.created="2024-11-14T12:50:43Z" LABEL org.opencontainers.image.source="https://github.com/stjude-rust-labs/fq" -LABEL org.opencontainers.image.revision="dd75d6f397b5865acc31c39e7b613f8fb2989757" +LABEL org.opencontainers.image.revision="402ad6a813c0d0b141bbf8f9a3aab9c270a74812" LABEL org.opencontainers.image.version="add_sgdemux" VIASHDOCKER diff --git a/target/executable/gffread/.config.vsh.yaml b/target/executable/gffread/.config.vsh.yaml index a3433455..1ca7679a 100644 --- a/target/executable/gffread/.config.vsh.yaml +++ b/target/executable/gffread/.config.vsh.yaml @@ -685,9 +685,9 @@ build_info: output: "target/executable/gffread" executable: "target/executable/gffread/gffread" viash_version: "0.9.0" - git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757" - git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox" - git_tag: "v0.2.0-26-gdd75d6f" + git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812" + git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-27-g402ad6a" package_config: name: "biobox" version: "add_sgdemux" diff --git a/target/executable/gffread/gffread b/target/executable/gffread/gffread index 86ae1772..ba259a6d 100755 --- a/target/executable/gffread/gffread +++ b/target/executable/gffread/gffread @@ -807,9 +807,9 @@ RUN echo "gffread: \"$(gffread --version 2>&1)\"" > /var/software_versions.txt LABEL org.opencontainers.image.authors="Emma Rousseau" LABEL org.opencontainers.image.description="Companion container for running component gffread" -LABEL org.opencontainers.image.created="2024-11-13T14:00:25Z" +LABEL org.opencontainers.image.created="2024-11-14T12:50:38Z" LABEL org.opencontainers.image.source="https://github.com/gpertea/gffread" -LABEL org.opencontainers.image.revision="dd75d6f397b5865acc31c39e7b613f8fb2989757" +LABEL org.opencontainers.image.revision="402ad6a813c0d0b141bbf8f9a3aab9c270a74812" LABEL org.opencontainers.image.version="add_sgdemux" VIASHDOCKER diff --git a/target/executable/kallisto/kallisto_index/.config.vsh.yaml b/target/executable/kallisto/kallisto_index/.config.vsh.yaml index d33aafa4..23f86c1c 100644 --- a/target/executable/kallisto/kallisto_index/.config.vsh.yaml +++ b/target/executable/kallisto/kallisto_index/.config.vsh.yaml @@ -218,9 +218,9 @@ build_info: output: "target/executable/kallisto/kallisto_index" executable: "target/executable/kallisto/kallisto_index/kallisto_index" viash_version: "0.9.0" - git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757" - git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox" - git_tag: "v0.2.0-26-gdd75d6f" + git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812" + git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-27-g402ad6a" package_config: name: "biobox" version: "add_sgdemux" diff --git a/target/executable/kallisto/kallisto_index/kallisto_index b/target/executable/kallisto/kallisto_index/kallisto_index index 30a860eb..8f121cd6 100755 --- a/target/executable/kallisto/kallisto_index/kallisto_index +++ b/target/executable/kallisto/kallisto_index/kallisto_index @@ -506,9 +506,9 @@ tar -xzf kallisto_linux-v0.50.1.tar.gz && \ mv kallisto/kallisto /usr/local/bin/ LABEL org.opencontainers.image.description="Companion container for running component kallisto kallisto_index" -LABEL org.opencontainers.image.created="2024-11-13T14:00:24Z" +LABEL org.opencontainers.image.created="2024-11-14T12:50:38Z" LABEL org.opencontainers.image.source="https://github.com/pachterlab/kallisto" -LABEL org.opencontainers.image.revision="dd75d6f397b5865acc31c39e7b613f8fb2989757" +LABEL org.opencontainers.image.revision="402ad6a813c0d0b141bbf8f9a3aab9c270a74812" LABEL org.opencontainers.image.version="add_sgdemux" VIASHDOCKER diff --git a/target/executable/kallisto/kallisto_quant/.config.vsh.yaml b/target/executable/kallisto/kallisto_quant/.config.vsh.yaml index ed1ed16e..eb80e587 100644 --- a/target/executable/kallisto/kallisto_quant/.config.vsh.yaml +++ b/target/executable/kallisto/kallisto_quant/.config.vsh.yaml @@ -246,9 +246,9 @@ build_info: output: "target/executable/kallisto/kallisto_quant" executable: "target/executable/kallisto/kallisto_quant/kallisto_quant" viash_version: "0.9.0" - git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757" - git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox" - git_tag: "v0.2.0-26-gdd75d6f" + git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812" + git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-27-g402ad6a" package_config: name: "biobox" version: "add_sgdemux" diff --git a/target/executable/kallisto/kallisto_quant/kallisto_quant b/target/executable/kallisto/kallisto_quant/kallisto_quant index f3ec0259..544b864f 100755 --- a/target/executable/kallisto/kallisto_quant/kallisto_quant +++ b/target/executable/kallisto/kallisto_quant/kallisto_quant @@ -522,9 +522,9 @@ mv kallisto/kallisto /usr/local/bin/ RUN echo "kallisto: $(kallisto version | sed 's/kallisto, version //')" > /var/software_versions.txt LABEL org.opencontainers.image.description="Companion container for running component kallisto kallisto_quant" -LABEL org.opencontainers.image.created="2024-11-13T14:00:25Z" +LABEL org.opencontainers.image.created="2024-11-14T12:50:38Z" LABEL org.opencontainers.image.source="https://github.com/pachterlab/kallisto" -LABEL org.opencontainers.image.revision="dd75d6f397b5865acc31c39e7b613f8fb2989757" +LABEL org.opencontainers.image.revision="402ad6a813c0d0b141bbf8f9a3aab9c270a74812" LABEL org.opencontainers.image.version="add_sgdemux" VIASHDOCKER diff --git a/target/executable/lofreq/lofreq_call/.config.vsh.yaml b/target/executable/lofreq/lofreq_call/.config.vsh.yaml index 510191f5..d62298bd 100644 --- a/target/executable/lofreq/lofreq_call/.config.vsh.yaml +++ b/target/executable/lofreq/lofreq_call/.config.vsh.yaml @@ -507,9 +507,9 @@ build_info: output: "target/executable/lofreq/lofreq_call" executable: "target/executable/lofreq/lofreq_call/lofreq_call" viash_version: "0.9.0" - git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757" - git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox" - git_tag: "v0.2.0-26-gdd75d6f" + git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812" + git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-27-g402ad6a" package_config: name: "biobox" version: "add_sgdemux" diff --git a/target/executable/lofreq/lofreq_call/lofreq_call b/target/executable/lofreq/lofreq_call/lofreq_call index c3ca8ddb..30cf8565 100755 --- a/target/executable/lofreq/lofreq_call/lofreq_call +++ b/target/executable/lofreq/lofreq_call/lofreq_call @@ -656,9 +656,9 @@ echo "lofreq: $version" > /var/software_versions.txt LABEL org.opencontainers.image.authors="Kai Waldrant" LABEL org.opencontainers.image.description="Companion container for running component lofreq lofreq_call" -LABEL org.opencontainers.image.created="2024-11-13T14:00:36Z" +LABEL org.opencontainers.image.created="2024-11-14T12:50:49Z" LABEL org.opencontainers.image.source="https://github.com/viash-hub/biobox" -LABEL org.opencontainers.image.revision="dd75d6f397b5865acc31c39e7b613f8fb2989757" +LABEL org.opencontainers.image.revision="402ad6a813c0d0b141bbf8f9a3aab9c270a74812" LABEL org.opencontainers.image.version="add_sgdemux" VIASHDOCKER diff --git a/target/executable/lofreq/lofreq_indelqual/.config.vsh.yaml b/target/executable/lofreq/lofreq_indelqual/.config.vsh.yaml index 05086b85..6dce3669 100644 --- a/target/executable/lofreq/lofreq_indelqual/.config.vsh.yaml +++ b/target/executable/lofreq/lofreq_indelqual/.config.vsh.yaml @@ -215,9 +215,9 @@ build_info: output: "target/executable/lofreq/lofreq_indelqual" executable: "target/executable/lofreq/lofreq_indelqual/lofreq_indelqual" viash_version: "0.9.0" - git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757" - git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox" - git_tag: "v0.2.0-26-gdd75d6f" + git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812" + git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-27-g402ad6a" package_config: name: "biobox" version: "add_sgdemux" diff --git a/target/executable/lofreq/lofreq_indelqual/lofreq_indelqual b/target/executable/lofreq/lofreq_indelqual/lofreq_indelqual index 17bd8c93..e8ff5425 100755 --- a/target/executable/lofreq/lofreq_indelqual/lofreq_indelqual +++ b/target/executable/lofreq/lofreq_indelqual/lofreq_indelqual @@ -501,9 +501,9 @@ echo "lofreq: $version" > /var/software_versions.txt LABEL org.opencontainers.image.authors="Kai Waldrant" LABEL org.opencontainers.image.description="Companion container for running component lofreq lofreq_indelqual" -LABEL org.opencontainers.image.created="2024-11-13T14:00:36Z" +LABEL org.opencontainers.image.created="2024-11-14T12:50:50Z" LABEL org.opencontainers.image.source="https://github.com/viash-hub/biobox" -LABEL org.opencontainers.image.revision="dd75d6f397b5865acc31c39e7b613f8fb2989757" +LABEL org.opencontainers.image.revision="402ad6a813c0d0b141bbf8f9a3aab9c270a74812" LABEL org.opencontainers.image.version="add_sgdemux" VIASHDOCKER diff --git a/target/executable/multiqc/.config.vsh.yaml b/target/executable/multiqc/.config.vsh.yaml index fadcc43c..0e53db38 100644 --- a/target/executable/multiqc/.config.vsh.yaml +++ b/target/executable/multiqc/.config.vsh.yaml @@ -456,9 +456,9 @@ build_info: output: "target/executable/multiqc" executable: "target/executable/multiqc/multiqc" viash_version: "0.9.0" - git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757" - git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox" - git_tag: "v0.2.0-26-gdd75d6f" + git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812" + git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-27-g402ad6a" package_config: name: "biobox" version: "add_sgdemux" diff --git a/target/executable/multiqc/multiqc b/target/executable/multiqc/multiqc index b278b393..2b73ef4c 100755 --- a/target/executable/multiqc/multiqc +++ b/target/executable/multiqc/multiqc @@ -637,9 +637,9 @@ RUN multiqc --version | sed 's/multiqc, version\s\(.*\)/multiqc: "\1"/' > /var/s LABEL org.opencontainers.image.authors="Dorien Roosen" LABEL org.opencontainers.image.description="Companion container for running component multiqc" -LABEL org.opencontainers.image.created="2024-11-13T14:00:27Z" +LABEL org.opencontainers.image.created="2024-11-14T12:50:40Z" LABEL org.opencontainers.image.source="https://github.com/viash-hub/biobox" -LABEL org.opencontainers.image.revision="dd75d6f397b5865acc31c39e7b613f8fb2989757" +LABEL org.opencontainers.image.revision="402ad6a813c0d0b141bbf8f9a3aab9c270a74812" LABEL org.opencontainers.image.version="add_sgdemux" VIASHDOCKER diff --git a/target/executable/nanoplot/.config.vsh.yaml b/target/executable/nanoplot/.config.vsh.yaml index 09b1d596..ca09b9bb 100644 --- a/target/executable/nanoplot/.config.vsh.yaml +++ b/target/executable/nanoplot/.config.vsh.yaml @@ -492,9 +492,9 @@ build_info: output: "target/executable/nanoplot" executable: "target/executable/nanoplot/nanoplot" viash_version: "0.9.0" - git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757" - git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox" - git_tag: "v0.2.0-26-gdd75d6f" + git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812" + git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-27-g402ad6a" package_config: name: "biobox" version: "add_sgdemux" diff --git a/target/executable/nanoplot/nanoplot b/target/executable/nanoplot/nanoplot index badff057..a884dd81 100755 --- a/target/executable/nanoplot/nanoplot +++ b/target/executable/nanoplot/nanoplot @@ -661,9 +661,9 @@ RUN version=$(NanoPlot --version) && \ echo "$version" > /var/software_versions.txt LABEL org.opencontainers.image.description="Companion container for running component nanoplot" -LABEL org.opencontainers.image.created="2024-11-13T14:00:27Z" +LABEL org.opencontainers.image.created="2024-11-14T12:50:40Z" LABEL org.opencontainers.image.source="https://github.com/wdecoster/NanoPlot" -LABEL org.opencontainers.image.revision="dd75d6f397b5865acc31c39e7b613f8fb2989757" +LABEL org.opencontainers.image.revision="402ad6a813c0d0b141bbf8f9a3aab9c270a74812" LABEL org.opencontainers.image.version="add_sgdemux" VIASHDOCKER diff --git a/target/executable/pear/.config.vsh.yaml b/target/executable/pear/.config.vsh.yaml index 292c3eb4..f5fc61c3 100644 --- a/target/executable/pear/.config.vsh.yaml +++ b/target/executable/pear/.config.vsh.yaml @@ -398,9 +398,9 @@ build_info: output: "target/executable/pear" executable: "target/executable/pear/pear" viash_version: "0.9.0" - git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757" - git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox" - git_tag: "v0.2.0-26-gdd75d6f" + git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812" + git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-27-g402ad6a" package_config: name: "biobox" version: "add_sgdemux" diff --git a/target/executable/pear/pear b/target/executable/pear/pear index 0d31590c..b5b26cbf 100755 --- a/target/executable/pear/pear +++ b/target/executable/pear/pear @@ -597,9 +597,9 @@ echo "pear: $version" > /var/software_versions.txt LABEL org.opencontainers.image.authors="Kai Waldrant" LABEL org.opencontainers.image.description="Companion container for running component pear" -LABEL org.opencontainers.image.created="2024-11-13T14:00:30Z" +LABEL org.opencontainers.image.created="2024-11-14T12:50:44Z" LABEL org.opencontainers.image.source="https://github.com/tseemann/PEAR" -LABEL org.opencontainers.image.revision="dd75d6f397b5865acc31c39e7b613f8fb2989757" +LABEL org.opencontainers.image.revision="402ad6a813c0d0b141bbf8f9a3aab9c270a74812" LABEL org.opencontainers.image.version="add_sgdemux" VIASHDOCKER diff --git a/target/executable/qualimap/qualimap_rnaseq/.config.vsh.yaml b/target/executable/qualimap/qualimap_rnaseq/.config.vsh.yaml index a39e45fd..23122bd7 100644 --- a/target/executable/qualimap/qualimap_rnaseq/.config.vsh.yaml +++ b/target/executable/qualimap/qualimap_rnaseq/.config.vsh.yaml @@ -264,9 +264,9 @@ build_info: output: "target/executable/qualimap/qualimap_rnaseq" executable: "target/executable/qualimap/qualimap_rnaseq/qualimap_rnaseq" viash_version: "0.9.0" - git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757" - git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox" - git_tag: "v0.2.0-26-gdd75d6f" + git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812" + git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-27-g402ad6a" package_config: name: "biobox" version: "add_sgdemux" diff --git a/target/executable/qualimap/qualimap_rnaseq/qualimap_rnaseq b/target/executable/qualimap/qualimap_rnaseq/qualimap_rnaseq index 944b7905..afb4419b 100755 --- a/target/executable/qualimap/qualimap_rnaseq/qualimap_rnaseq +++ b/target/executable/qualimap/qualimap_rnaseq/qualimap_rnaseq @@ -527,9 +527,9 @@ RUN echo QualiMap: $(qualimap 2>&1 | grep QualiMap | sed 's/^.*QualiMap//') > /v LABEL org.opencontainers.image.authors="Dorien Roosen" LABEL org.opencontainers.image.description="Companion container for running component qualimap qualimap_rnaseq" -LABEL org.opencontainers.image.created="2024-11-13T14:00:24Z" +LABEL org.opencontainers.image.created="2024-11-14T12:50:37Z" LABEL org.opencontainers.image.source="https://bitbucket.org/kokonech/qualimap/commits/branch/master" -LABEL org.opencontainers.image.revision="dd75d6f397b5865acc31c39e7b613f8fb2989757" +LABEL org.opencontainers.image.revision="402ad6a813c0d0b141bbf8f9a3aab9c270a74812" LABEL org.opencontainers.image.version="add_sgdemux" VIASHDOCKER diff --git a/target/executable/rsem/rsem_calculate_expression/.config.vsh.yaml b/target/executable/rsem/rsem_calculate_expression/.config.vsh.yaml index 91648f08..29e321f9 100644 --- a/target/executable/rsem/rsem_calculate_expression/.config.vsh.yaml +++ b/target/executable/rsem/rsem_calculate_expression/.config.vsh.yaml @@ -852,9 +852,9 @@ build_info: output: "target/executable/rsem/rsem_calculate_expression" executable: "target/executable/rsem/rsem_calculate_expression/rsem_calculate_expression" viash_version: "0.9.0" - git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757" - git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox" - git_tag: "v0.2.0-26-gdd75d6f" + git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812" + git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-27-g402ad6a" package_config: name: "biobox" version: "add_sgdemux" diff --git a/target/executable/rsem/rsem_calculate_expression/rsem_calculate_expression b/target/executable/rsem/rsem_calculate_expression/rsem_calculate_expression index e98ca9ca..ebac3c40 100755 --- a/target/executable/rsem/rsem_calculate_expression/rsem_calculate_expression +++ b/target/executable/rsem/rsem_calculate_expression/rsem_calculate_expression @@ -991,9 +991,9 @@ echo "bowtie: `bowtie --version | grep -oP 'bowtie-align-s version \K\d+\.\d+\.\ echo "HISAT2: `hisat2 --version | grep -oP 'hisat2-align-s version \K\d+\.\d+\.\d+'`" >> /var/software_versions.txt LABEL org.opencontainers.image.description="Companion container for running component rsem rsem_calculate_expression" -LABEL org.opencontainers.image.created="2024-11-13T14:00:23Z" +LABEL org.opencontainers.image.created="2024-11-14T12:50:36Z" LABEL org.opencontainers.image.source="https://github.com/deweylab/RSEM" -LABEL org.opencontainers.image.revision="dd75d6f397b5865acc31c39e7b613f8fb2989757" +LABEL org.opencontainers.image.revision="402ad6a813c0d0b141bbf8f9a3aab9c270a74812" LABEL org.opencontainers.image.version="add_sgdemux" VIASHDOCKER diff --git a/target/executable/rsem/rsem_prepare_reference/.config.vsh.yaml b/target/executable/rsem/rsem_prepare_reference/.config.vsh.yaml index 28ceec67..d3ee36b4 100644 --- a/target/executable/rsem/rsem_prepare_reference/.config.vsh.yaml +++ b/target/executable/rsem/rsem_prepare_reference/.config.vsh.yaml @@ -416,9 +416,9 @@ build_info: output: "target/executable/rsem/rsem_prepare_reference" executable: "target/executable/rsem/rsem_prepare_reference/rsem_prepare_reference" viash_version: "0.9.0" - git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757" - git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox" - git_tag: "v0.2.0-26-gdd75d6f" + git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812" + git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-27-g402ad6a" package_config: name: "biobox" version: "add_sgdemux" diff --git a/target/executable/rsem/rsem_prepare_reference/rsem_prepare_reference b/target/executable/rsem/rsem_prepare_reference/rsem_prepare_reference index b65e7adc..f14ea04c 100755 --- a/target/executable/rsem/rsem_prepare_reference/rsem_prepare_reference +++ b/target/executable/rsem/rsem_prepare_reference/rsem_prepare_reference @@ -656,9 +656,9 @@ echo "HISAT2: `hisat2 --version | grep -oP 'hisat2-align-s version \K\d+\.\d+\.\ LABEL org.opencontainers.image.authors="Sai Nirmayi Yasa" LABEL org.opencontainers.image.description="Companion container for running component rsem rsem_prepare_reference" -LABEL org.opencontainers.image.created="2024-11-13T14:00:23Z" +LABEL org.opencontainers.image.created="2024-11-14T12:50:37Z" LABEL org.opencontainers.image.source="https://github.com/deweylab/RSEM" -LABEL org.opencontainers.image.revision="dd75d6f397b5865acc31c39e7b613f8fb2989757" +LABEL org.opencontainers.image.revision="402ad6a813c0d0b141bbf8f9a3aab9c270a74812" LABEL org.opencontainers.image.version="add_sgdemux" VIASHDOCKER diff --git a/target/executable/rseqc/rseqc_bamstat/.config.vsh.yaml b/target/executable/rseqc/rseqc_bamstat/.config.vsh.yaml index 51816a52..1513a1fd 100644 --- a/target/executable/rseqc/rseqc_bamstat/.config.vsh.yaml +++ b/target/executable/rseqc/rseqc_bamstat/.config.vsh.yaml @@ -175,9 +175,9 @@ build_info: output: "target/executable/rseqc/rseqc_bamstat" executable: "target/executable/rseqc/rseqc_bamstat/rseqc_bamstat" viash_version: "0.9.0" - git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757" - git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox" - git_tag: "v0.2.0-26-gdd75d6f" + git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812" + git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-27-g402ad6a" package_config: name: "biobox" version: "add_sgdemux" diff --git a/target/executable/rseqc/rseqc_bamstat/rseqc_bamstat b/target/executable/rseqc/rseqc_bamstat/rseqc_bamstat index e638b17c..0c6ce60f 100755 --- a/target/executable/rseqc/rseqc_bamstat/rseqc_bamstat +++ b/target/executable/rseqc/rseqc_bamstat/rseqc_bamstat @@ -477,9 +477,9 @@ RUN echo "RSeQC bam_stat.py: $(bam_stat.py --version | cut -d' ' -f2-)" > /var/s LABEL org.opencontainers.image.authors="Emma Rousseau" LABEL org.opencontainers.image.description="Companion container for running component rseqc rseqc_bamstat" -LABEL org.opencontainers.image.created="2024-11-13T14:00:29Z" +LABEL org.opencontainers.image.created="2024-11-14T12:50:43Z" LABEL org.opencontainers.image.source="https://github.com/MonashBioinformaticsPlatform/RSeQC" -LABEL org.opencontainers.image.revision="dd75d6f397b5865acc31c39e7b613f8fb2989757" +LABEL org.opencontainers.image.revision="402ad6a813c0d0b141bbf8f9a3aab9c270a74812" LABEL org.opencontainers.image.version="add_sgdemux" VIASHDOCKER diff --git a/target/executable/rseqc/rseqc_inferexperiment/.config.vsh.yaml b/target/executable/rseqc/rseqc_inferexperiment/.config.vsh.yaml index dcb80b1b..2cf85fd7 100644 --- a/target/executable/rseqc/rseqc_inferexperiment/.config.vsh.yaml +++ b/target/executable/rseqc/rseqc_inferexperiment/.config.vsh.yaml @@ -201,9 +201,9 @@ build_info: output: "target/executable/rseqc/rseqc_inferexperiment" executable: "target/executable/rseqc/rseqc_inferexperiment/rseqc_inferexperiment" viash_version: "0.9.0" - git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757" - git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox" - git_tag: "v0.2.0-26-gdd75d6f" + git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812" + git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-27-g402ad6a" package_config: name: "biobox" version: "add_sgdemux" diff --git a/target/executable/rseqc/rseqc_inferexperiment/rseqc_inferexperiment b/target/executable/rseqc/rseqc_inferexperiment/rseqc_inferexperiment index 9c942779..8220d14d 100755 --- a/target/executable/rseqc/rseqc_inferexperiment/rseqc_inferexperiment +++ b/target/executable/rseqc/rseqc_inferexperiment/rseqc_inferexperiment @@ -488,9 +488,9 @@ RUN echo "RSeQC - infer_experiment.py: $(infer_experiment.py --version | cut -d' LABEL org.opencontainers.image.authors="Emma Rousseau" LABEL org.opencontainers.image.description="Companion container for running component rseqc rseqc_inferexperiment" -LABEL org.opencontainers.image.created="2024-11-13T14:00:30Z" +LABEL org.opencontainers.image.created="2024-11-14T12:50:43Z" LABEL org.opencontainers.image.source="https://github.com/MonashBioinformaticsPlatform/RSeQC" -LABEL org.opencontainers.image.revision="dd75d6f397b5865acc31c39e7b613f8fb2989757" +LABEL org.opencontainers.image.revision="402ad6a813c0d0b141bbf8f9a3aab9c270a74812" LABEL org.opencontainers.image.version="add_sgdemux" VIASHDOCKER diff --git a/target/executable/rseqc/rseqc_inner_distance/.config.vsh.yaml b/target/executable/rseqc/rseqc_inner_distance/.config.vsh.yaml index f4ebcf0c..9ca0fc1a 100644 --- a/target/executable/rseqc/rseqc_inner_distance/.config.vsh.yaml +++ b/target/executable/rseqc/rseqc_inner_distance/.config.vsh.yaml @@ -294,9 +294,9 @@ build_info: output: "target/executable/rseqc/rseqc_inner_distance" executable: "target/executable/rseqc/rseqc_inner_distance/rseqc_inner_distance" viash_version: "0.9.0" - git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757" - git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox" - git_tag: "v0.2.0-26-gdd75d6f" + git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812" + git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-27-g402ad6a" package_config: name: "biobox" version: "add_sgdemux" diff --git a/target/executable/rseqc/rseqc_inner_distance/rseqc_inner_distance b/target/executable/rseqc/rseqc_inner_distance/rseqc_inner_distance index 2bf2ecfb..9677c599 100755 --- a/target/executable/rseqc/rseqc_inner_distance/rseqc_inner_distance +++ b/target/executable/rseqc/rseqc_inner_distance/rseqc_inner_distance @@ -532,9 +532,9 @@ RUN echo "RSeQC - inner_distance.py: $(inner_distance.py --version | cut -d' ' - LABEL org.opencontainers.image.authors="Emma Rousseau" LABEL org.opencontainers.image.description="Companion container for running component rseqc rseqc_inner_distance" -LABEL org.opencontainers.image.created="2024-11-13T14:00:29Z" +LABEL org.opencontainers.image.created="2024-11-14T12:50:42Z" LABEL org.opencontainers.image.source="https://github.com/MonashBioinformaticsPlatform/RSeQC" -LABEL org.opencontainers.image.revision="dd75d6f397b5865acc31c39e7b613f8fb2989757" +LABEL org.opencontainers.image.revision="402ad6a813c0d0b141bbf8f9a3aab9c270a74812" LABEL org.opencontainers.image.version="add_sgdemux" VIASHDOCKER diff --git a/target/executable/salmon/salmon_index/.config.vsh.yaml b/target/executable/salmon/salmon_index/.config.vsh.yaml index 3e3cfb8b..0c3a8b04 100644 --- a/target/executable/salmon/salmon_index/.config.vsh.yaml +++ b/target/executable/salmon/salmon_index/.config.vsh.yaml @@ -277,9 +277,9 @@ build_info: output: "target/executable/salmon/salmon_index" executable: "target/executable/salmon/salmon_index/salmon_index" viash_version: "0.9.0" - git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757" - git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox" - git_tag: "v0.2.0-26-gdd75d6f" + git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812" + git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-27-g402ad6a" package_config: name: "biobox" version: "add_sgdemux" diff --git a/target/executable/salmon/salmon_index/salmon_index b/target/executable/salmon/salmon_index/salmon_index index c18aa9a2..955bff8d 100755 --- a/target/executable/salmon/salmon_index/salmon_index +++ b/target/executable/salmon/salmon_index/salmon_index @@ -546,9 +546,9 @@ RUN salmon index -v 2>&1 | sed 's/salmon \([0-9.]*\)/salmon: \1/' > /var/softwar LABEL org.opencontainers.image.authors="Sai Nirmayi Yasa" LABEL org.opencontainers.image.description="Companion container for running component salmon salmon_index" -LABEL org.opencontainers.image.created="2024-11-13T14:00:33Z" +LABEL org.opencontainers.image.created="2024-11-14T12:50:46Z" LABEL org.opencontainers.image.source="https://github.com/COMBINE-lab/salmon" -LABEL org.opencontainers.image.revision="dd75d6f397b5865acc31c39e7b613f8fb2989757" +LABEL org.opencontainers.image.revision="402ad6a813c0d0b141bbf8f9a3aab9c270a74812" LABEL org.opencontainers.image.version="add_sgdemux" VIASHDOCKER diff --git a/target/executable/salmon/salmon_quant/.config.vsh.yaml b/target/executable/salmon/salmon_quant/.config.vsh.yaml index f87be7d1..dc96bd66 100644 --- a/target/executable/salmon/salmon_quant/.config.vsh.yaml +++ b/target/executable/salmon/salmon_quant/.config.vsh.yaml @@ -1173,9 +1173,9 @@ build_info: output: "target/executable/salmon/salmon_quant" executable: "target/executable/salmon/salmon_quant/salmon_quant" viash_version: "0.9.0" - git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757" - git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox" - git_tag: "v0.2.0-26-gdd75d6f" + git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812" + git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-27-g402ad6a" package_config: name: "biobox" version: "add_sgdemux" diff --git a/target/executable/salmon/salmon_quant/salmon_quant b/target/executable/salmon/salmon_quant/salmon_quant index dc994841..9027811d 100755 --- a/target/executable/salmon/salmon_quant/salmon_quant +++ b/target/executable/salmon/salmon_quant/salmon_quant @@ -1168,9 +1168,9 @@ RUN salmon index -v 2>&1 | sed 's/salmon \([0-9.]*\)/salmon: \1/' > /var/softwar LABEL org.opencontainers.image.authors="Sai Nirmayi Yasa" LABEL org.opencontainers.image.description="Companion container for running component salmon salmon_quant" -LABEL org.opencontainers.image.created="2024-11-13T14:00:32Z" +LABEL org.opencontainers.image.created="2024-11-14T12:50:45Z" LABEL org.opencontainers.image.source="https://github.com/COMBINE-lab/salmon" -LABEL org.opencontainers.image.revision="dd75d6f397b5865acc31c39e7b613f8fb2989757" +LABEL org.opencontainers.image.revision="402ad6a813c0d0b141bbf8f9a3aab9c270a74812" LABEL org.opencontainers.image.version="add_sgdemux" VIASHDOCKER diff --git a/target/executable/samtools/samtools_collate/.config.vsh.yaml b/target/executable/samtools/samtools_collate/.config.vsh.yaml index 9296f712..4874b8d1 100644 --- a/target/executable/samtools/samtools_collate/.config.vsh.yaml +++ b/target/executable/samtools/samtools_collate/.config.vsh.yaml @@ -264,9 +264,9 @@ build_info: output: "target/executable/samtools/samtools_collate" executable: "target/executable/samtools/samtools_collate/samtools_collate" viash_version: "0.9.0" - git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757" - git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox" - git_tag: "v0.2.0-26-gdd75d6f" + git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812" + git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-27-g402ad6a" package_config: name: "biobox" version: "add_sgdemux" diff --git a/target/executable/samtools/samtools_collate/samtools_collate b/target/executable/samtools/samtools_collate/samtools_collate index 8777c5f5..ae9dbacb 100755 --- a/target/executable/samtools/samtools_collate/samtools_collate +++ b/target/executable/samtools/samtools_collate/samtools_collate @@ -519,9 +519,9 @@ sed 's#Using ##;s# \([0-9\.]*\)$#: \1#' > /var/software_versions.txt LABEL org.opencontainers.image.authors="Emma Rousseau" LABEL org.opencontainers.image.description="Companion container for running component samtools samtools_collate" -LABEL org.opencontainers.image.created="2024-11-13T14:00:29Z" +LABEL org.opencontainers.image.created="2024-11-14T12:50:43Z" LABEL org.opencontainers.image.source="https://github.com/samtools/samtools" -LABEL org.opencontainers.image.revision="dd75d6f397b5865acc31c39e7b613f8fb2989757" +LABEL org.opencontainers.image.revision="402ad6a813c0d0b141bbf8f9a3aab9c270a74812" LABEL org.opencontainers.image.version="add_sgdemux" VIASHDOCKER diff --git a/target/executable/samtools/samtools_faidx/.config.vsh.yaml b/target/executable/samtools/samtools_faidx/.config.vsh.yaml index 08fe5ea5..f36bbc31 100644 --- a/target/executable/samtools/samtools_faidx/.config.vsh.yaml +++ b/target/executable/samtools/samtools_faidx/.config.vsh.yaml @@ -243,9 +243,9 @@ build_info: output: "target/executable/samtools/samtools_faidx" executable: "target/executable/samtools/samtools_faidx/samtools_faidx" viash_version: "0.9.0" - git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757" - git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox" - git_tag: "v0.2.0-26-gdd75d6f" + git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812" + git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-27-g402ad6a" package_config: name: "biobox" version: "add_sgdemux" diff --git a/target/executable/samtools/samtools_faidx/samtools_faidx b/target/executable/samtools/samtools_faidx/samtools_faidx index 10dc9c59..5e273e97 100755 --- a/target/executable/samtools/samtools_faidx/samtools_faidx +++ b/target/executable/samtools/samtools_faidx/samtools_faidx @@ -512,9 +512,9 @@ sed 's#Using ##;s# \([0-9\.]*\)$#: \1#' > /var/software_versions.txt LABEL org.opencontainers.image.authors="Emma Rousseau" LABEL org.opencontainers.image.description="Companion container for running component samtools samtools_faidx" -LABEL org.opencontainers.image.created="2024-11-13T14:00:31Z" +LABEL org.opencontainers.image.created="2024-11-14T12:50:44Z" LABEL org.opencontainers.image.source="https://github.com/samtools/samtools" -LABEL org.opencontainers.image.revision="dd75d6f397b5865acc31c39e7b613f8fb2989757" +LABEL org.opencontainers.image.revision="402ad6a813c0d0b141bbf8f9a3aab9c270a74812" LABEL org.opencontainers.image.version="add_sgdemux" VIASHDOCKER diff --git a/target/executable/samtools/samtools_fasta/.config.vsh.yaml b/target/executable/samtools/samtools_fasta/.config.vsh.yaml index 9cf28e5f..b8434bbb 100644 --- a/target/executable/samtools/samtools_fasta/.config.vsh.yaml +++ b/target/executable/samtools/samtools_fasta/.config.vsh.yaml @@ -433,9 +433,9 @@ build_info: output: "target/executable/samtools/samtools_fasta" executable: "target/executable/samtools/samtools_fasta/samtools_fasta" viash_version: "0.9.0" - git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757" - git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox" - git_tag: "v0.2.0-26-gdd75d6f" + git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812" + git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-27-g402ad6a" package_config: name: "biobox" version: "add_sgdemux" diff --git a/target/executable/samtools/samtools_fasta/samtools_fasta b/target/executable/samtools/samtools_fasta/samtools_fasta index b7c1bdcc..fef455ca 100755 --- a/target/executable/samtools/samtools_fasta/samtools_fasta +++ b/target/executable/samtools/samtools_fasta/samtools_fasta @@ -625,9 +625,9 @@ sed 's#Using ##;s# \([0-9\.]*\)$#: \1#' > /var/software_versions.txt LABEL org.opencontainers.image.authors="Emma Rousseau" LABEL org.opencontainers.image.description="Companion container for running component samtools samtools_fasta" -LABEL org.opencontainers.image.created="2024-11-13T14:00:31Z" +LABEL org.opencontainers.image.created="2024-11-14T12:50:44Z" LABEL org.opencontainers.image.source="https://github.com/samtools/samtools" -LABEL org.opencontainers.image.revision="dd75d6f397b5865acc31c39e7b613f8fb2989757" +LABEL org.opencontainers.image.revision="402ad6a813c0d0b141bbf8f9a3aab9c270a74812" LABEL org.opencontainers.image.version="add_sgdemux" VIASHDOCKER diff --git a/target/executable/samtools/samtools_fastq/.config.vsh.yaml b/target/executable/samtools/samtools_fastq/.config.vsh.yaml index b8f6a548..b7d62b07 100644 --- a/target/executable/samtools/samtools_fastq/.config.vsh.yaml +++ b/target/executable/samtools/samtools_fastq/.config.vsh.yaml @@ -433,9 +433,9 @@ build_info: output: "target/executable/samtools/samtools_fastq" executable: "target/executable/samtools/samtools_fastq/samtools_fastq" viash_version: "0.9.0" - git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757" - git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox" - git_tag: "v0.2.0-26-gdd75d6f" + git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812" + git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-27-g402ad6a" package_config: name: "biobox" version: "add_sgdemux" diff --git a/target/executable/samtools/samtools_fastq/samtools_fastq b/target/executable/samtools/samtools_fastq/samtools_fastq index 4c42cf5a..e0262afc 100755 --- a/target/executable/samtools/samtools_fastq/samtools_fastq +++ b/target/executable/samtools/samtools_fastq/samtools_fastq @@ -626,9 +626,9 @@ sed 's#Using ##;s# \([0-9\.]*\)$#: \1#' > /var/software_versions.txt LABEL org.opencontainers.image.authors="Emma Rousseau" LABEL org.opencontainers.image.description="Companion container for running component samtools samtools_fastq" -LABEL org.opencontainers.image.created="2024-11-13T14:00:28Z" +LABEL org.opencontainers.image.created="2024-11-14T12:50:42Z" LABEL org.opencontainers.image.source="https://github.com/samtools/samtools" -LABEL org.opencontainers.image.revision="dd75d6f397b5865acc31c39e7b613f8fb2989757" +LABEL org.opencontainers.image.revision="402ad6a813c0d0b141bbf8f9a3aab9c270a74812" LABEL org.opencontainers.image.version="add_sgdemux" VIASHDOCKER diff --git a/target/executable/samtools/samtools_flagstat/.config.vsh.yaml b/target/executable/samtools/samtools_flagstat/.config.vsh.yaml index a300ebd8..05faf356 100644 --- a/target/executable/samtools/samtools_flagstat/.config.vsh.yaml +++ b/target/executable/samtools/samtools_flagstat/.config.vsh.yaml @@ -173,9 +173,9 @@ build_info: output: "target/executable/samtools/samtools_flagstat" executable: "target/executable/samtools/samtools_flagstat/samtools_flagstat" viash_version: "0.9.0" - git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757" - git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox" - git_tag: "v0.2.0-26-gdd75d6f" + git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812" + git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-27-g402ad6a" package_config: name: "biobox" version: "add_sgdemux" diff --git a/target/executable/samtools/samtools_flagstat/samtools_flagstat b/target/executable/samtools/samtools_flagstat/samtools_flagstat index c9f684b7..b0aa5d8c 100755 --- a/target/executable/samtools/samtools_flagstat/samtools_flagstat +++ b/target/executable/samtools/samtools_flagstat/samtools_flagstat @@ -474,9 +474,9 @@ sed 's#Using ##;s# \([0-9\.]*\)$#: \1#' > /var/software_versions.txt LABEL org.opencontainers.image.authors="Emma Rousseau" LABEL org.opencontainers.image.description="Companion container for running component samtools samtools_flagstat" -LABEL org.opencontainers.image.created="2024-11-13T14:00:29Z" +LABEL org.opencontainers.image.created="2024-11-14T12:50:42Z" LABEL org.opencontainers.image.source="https://github.com/samtools/samtools" -LABEL org.opencontainers.image.revision="dd75d6f397b5865acc31c39e7b613f8fb2989757" +LABEL org.opencontainers.image.revision="402ad6a813c0d0b141bbf8f9a3aab9c270a74812" LABEL org.opencontainers.image.version="add_sgdemux" VIASHDOCKER diff --git a/target/executable/samtools/samtools_idxstats/.config.vsh.yaml b/target/executable/samtools/samtools_idxstats/.config.vsh.yaml index 07fad57b..3b56804c 100644 --- a/target/executable/samtools/samtools_idxstats/.config.vsh.yaml +++ b/target/executable/samtools/samtools_idxstats/.config.vsh.yaml @@ -183,9 +183,9 @@ build_info: output: "target/executable/samtools/samtools_idxstats" executable: "target/executable/samtools/samtools_idxstats/samtools_idxstats" viash_version: "0.9.0" - git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757" - git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox" - git_tag: "v0.2.0-26-gdd75d6f" + git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812" + git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-27-g402ad6a" package_config: name: "biobox" version: "add_sgdemux" diff --git a/target/executable/samtools/samtools_idxstats/samtools_idxstats b/target/executable/samtools/samtools_idxstats/samtools_idxstats index fed3a0e6..def4049d 100755 --- a/target/executable/samtools/samtools_idxstats/samtools_idxstats +++ b/target/executable/samtools/samtools_idxstats/samtools_idxstats @@ -478,9 +478,9 @@ sed 's#Using ##;s# \([0-9\.]*\)$#: \1#' > /var/software_versions.txt LABEL org.opencontainers.image.authors="Emma Rousseau" LABEL org.opencontainers.image.description="Companion container for running component samtools samtools_idxstats" -LABEL org.opencontainers.image.created="2024-11-13T14:00:31Z" +LABEL org.opencontainers.image.created="2024-11-14T12:50:45Z" LABEL org.opencontainers.image.source="https://github.com/samtools/samtools" -LABEL org.opencontainers.image.revision="dd75d6f397b5865acc31c39e7b613f8fb2989757" +LABEL org.opencontainers.image.revision="402ad6a813c0d0b141bbf8f9a3aab9c270a74812" LABEL org.opencontainers.image.version="add_sgdemux" VIASHDOCKER diff --git a/target/executable/samtools/samtools_index/.config.vsh.yaml b/target/executable/samtools/samtools_index/.config.vsh.yaml index 0c50df00..3d9706eb 100644 --- a/target/executable/samtools/samtools_index/.config.vsh.yaml +++ b/target/executable/samtools/samtools_index/.config.vsh.yaml @@ -189,9 +189,9 @@ build_info: output: "target/executable/samtools/samtools_index" executable: "target/executable/samtools/samtools_index/samtools_index" viash_version: "0.9.0" - git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757" - git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox" - git_tag: "v0.2.0-26-gdd75d6f" + git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812" + git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-27-g402ad6a" package_config: name: "biobox" version: "add_sgdemux" diff --git a/target/executable/samtools/samtools_index/samtools_index b/target/executable/samtools/samtools_index/samtools_index index 9811effe..a5892103 100755 --- a/target/executable/samtools/samtools_index/samtools_index +++ b/target/executable/samtools/samtools_index/samtools_index @@ -485,9 +485,9 @@ sed 's#Using ##;s# \([0-9\.]*\)$#: \1#' > /var/software_versions.txt LABEL org.opencontainers.image.authors="Emma Rousseau" LABEL org.opencontainers.image.description="Companion container for running component samtools samtools_index" -LABEL org.opencontainers.image.created="2024-11-13T14:00:30Z" +LABEL org.opencontainers.image.created="2024-11-14T12:50:43Z" LABEL org.opencontainers.image.source="https://github.com/samtools/samtools" -LABEL org.opencontainers.image.revision="dd75d6f397b5865acc31c39e7b613f8fb2989757" +LABEL org.opencontainers.image.revision="402ad6a813c0d0b141bbf8f9a3aab9c270a74812" LABEL org.opencontainers.image.version="add_sgdemux" VIASHDOCKER diff --git a/target/executable/samtools/samtools_sort/.config.vsh.yaml b/target/executable/samtools/samtools_sort/.config.vsh.yaml index 6ecdb83a..dea713a2 100644 --- a/target/executable/samtools/samtools_sort/.config.vsh.yaml +++ b/target/executable/samtools/samtools_sort/.config.vsh.yaml @@ -332,9 +332,9 @@ build_info: output: "target/executable/samtools/samtools_sort" executable: "target/executable/samtools/samtools_sort/samtools_sort" viash_version: "0.9.0" - git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757" - git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox" - git_tag: "v0.2.0-26-gdd75d6f" + git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812" + git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-27-g402ad6a" package_config: name: "biobox" version: "add_sgdemux" diff --git a/target/executable/samtools/samtools_sort/samtools_sort b/target/executable/samtools/samtools_sort/samtools_sort index 9f95e576..aeeb8947 100755 --- a/target/executable/samtools/samtools_sort/samtools_sort +++ b/target/executable/samtools/samtools_sort/samtools_sort @@ -556,9 +556,9 @@ sed 's#Using ##;s# \([0-9\.]*\)$#: \1#' > /var/software_versions.txt LABEL org.opencontainers.image.authors="Emma Rousseau" LABEL org.opencontainers.image.description="Companion container for running component samtools samtools_sort" -LABEL org.opencontainers.image.created="2024-11-13T14:00:30Z" +LABEL org.opencontainers.image.created="2024-11-14T12:50:44Z" LABEL org.opencontainers.image.source="https://github.com/samtools/samtools" -LABEL org.opencontainers.image.revision="dd75d6f397b5865acc31c39e7b613f8fb2989757" +LABEL org.opencontainers.image.revision="402ad6a813c0d0b141bbf8f9a3aab9c270a74812" LABEL org.opencontainers.image.version="add_sgdemux" VIASHDOCKER diff --git a/target/executable/samtools/samtools_stats/.config.vsh.yaml b/target/executable/samtools/samtools_stats/.config.vsh.yaml index b5098262..aa2db740 100644 --- a/target/executable/samtools/samtools_stats/.config.vsh.yaml +++ b/target/executable/samtools/samtools_stats/.config.vsh.yaml @@ -401,9 +401,9 @@ build_info: output: "target/executable/samtools/samtools_stats" executable: "target/executable/samtools/samtools_stats/samtools_stats" viash_version: "0.9.0" - git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757" - git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox" - git_tag: "v0.2.0-26-gdd75d6f" + git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812" + git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-27-g402ad6a" package_config: name: "biobox" version: "add_sgdemux" diff --git a/target/executable/samtools/samtools_stats/samtools_stats b/target/executable/samtools/samtools_stats/samtools_stats index 9eeaa28e..471cd3f6 100755 --- a/target/executable/samtools/samtools_stats/samtools_stats +++ b/target/executable/samtools/samtools_stats/samtools_stats @@ -575,9 +575,9 @@ sed 's#Using ##;s# \([0-9\.]*\)$#: \1#' > /var/software_versions.txt LABEL org.opencontainers.image.authors="Emma Rousseau" LABEL org.opencontainers.image.description="Companion container for running component samtools samtools_stats" -LABEL org.opencontainers.image.created="2024-11-13T14:00:30Z" +LABEL org.opencontainers.image.created="2024-11-14T12:50:43Z" LABEL org.opencontainers.image.source="https://github.com/samtools/samtools" -LABEL org.opencontainers.image.revision="dd75d6f397b5865acc31c39e7b613f8fb2989757" +LABEL org.opencontainers.image.revision="402ad6a813c0d0b141bbf8f9a3aab9c270a74812" LABEL org.opencontainers.image.version="add_sgdemux" VIASHDOCKER diff --git a/target/executable/samtools/samtools_view/.config.vsh.yaml b/target/executable/samtools/samtools_view/.config.vsh.yaml index 7b95c20c..73294f52 100644 --- a/target/executable/samtools/samtools_view/.config.vsh.yaml +++ b/target/executable/samtools/samtools_view/.config.vsh.yaml @@ -665,9 +665,9 @@ build_info: output: "target/executable/samtools/samtools_view" executable: "target/executable/samtools/samtools_view/samtools_view" viash_version: "0.9.0" - git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757" - git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox" - git_tag: "v0.2.0-26-gdd75d6f" + git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812" + git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-27-g402ad6a" package_config: name: "biobox" version: "add_sgdemux" diff --git a/target/executable/samtools/samtools_view/samtools_view b/target/executable/samtools/samtools_view/samtools_view index e5651782..74c5660b 100755 --- a/target/executable/samtools/samtools_view/samtools_view +++ b/target/executable/samtools/samtools_view/samtools_view @@ -825,9 +825,9 @@ sed 's#Using ##;s# \([0-9\.]*\)$#: \1#' > /var/software_versions.txt LABEL org.opencontainers.image.authors="Emma Rousseau" LABEL org.opencontainers.image.description="Companion container for running component samtools samtools_view" -LABEL org.opencontainers.image.created="2024-11-13T14:00:29Z" +LABEL org.opencontainers.image.created="2024-11-14T12:50:42Z" LABEL org.opencontainers.image.source="https://github.com/samtools/samtools" -LABEL org.opencontainers.image.revision="dd75d6f397b5865acc31c39e7b613f8fb2989757" +LABEL org.opencontainers.image.revision="402ad6a813c0d0b141bbf8f9a3aab9c270a74812" LABEL org.opencontainers.image.version="add_sgdemux" VIASHDOCKER diff --git a/target/executable/seqtk/seqtk_sample/.config.vsh.yaml b/target/executable/seqtk/seqtk_sample/.config.vsh.yaml index dff7a032..5783f57f 100644 --- a/target/executable/seqtk/seqtk_sample/.config.vsh.yaml +++ b/target/executable/seqtk/seqtk_sample/.config.vsh.yaml @@ -173,9 +173,9 @@ build_info: output: "target/executable/seqtk/seqtk_sample" executable: "target/executable/seqtk/seqtk_sample/seqtk_sample" viash_version: "0.9.0" - git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757" - git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox" - git_tag: "v0.2.0-26-gdd75d6f" + git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812" + git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-27-g402ad6a" package_config: name: "biobox" version: "add_sgdemux" diff --git a/target/executable/seqtk/seqtk_sample/seqtk_sample b/target/executable/seqtk/seqtk_sample/seqtk_sample index d899979d..7f1c4a9f 100755 --- a/target/executable/seqtk/seqtk_sample/seqtk_sample +++ b/target/executable/seqtk/seqtk_sample/seqtk_sample @@ -481,9 +481,9 @@ FROM quay.io/biocontainers/seqtk:1.4--he4a0461_2 ENTRYPOINT [] LABEL org.opencontainers.image.authors="Jakub Majercik" LABEL org.opencontainers.image.description="Companion container for running component seqtk seqtk_sample" -LABEL org.opencontainers.image.created="2024-11-13T14:00:27Z" +LABEL org.opencontainers.image.created="2024-11-14T12:50:41Z" LABEL org.opencontainers.image.source="https://github.com/lh3/seqtk/tree/v1.4" -LABEL org.opencontainers.image.revision="dd75d6f397b5865acc31c39e7b613f8fb2989757" +LABEL org.opencontainers.image.revision="402ad6a813c0d0b141bbf8f9a3aab9c270a74812" LABEL org.opencontainers.image.version="add_sgdemux" VIASHDOCKER diff --git a/target/executable/seqtk/seqtk_subseq/.config.vsh.yaml b/target/executable/seqtk/seqtk_subseq/.config.vsh.yaml index a7d68a14..8c129652 100644 --- a/target/executable/seqtk/seqtk_subseq/.config.vsh.yaml +++ b/target/executable/seqtk/seqtk_subseq/.config.vsh.yaml @@ -196,9 +196,9 @@ build_info: output: "target/executable/seqtk/seqtk_subseq" executable: "target/executable/seqtk/seqtk_subseq/seqtk_subseq" viash_version: "0.9.0" - git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757" - git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox" - git_tag: "v0.2.0-26-gdd75d6f" + git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812" + git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-27-g402ad6a" package_config: name: "biobox" version: "add_sgdemux" diff --git a/target/executable/seqtk/seqtk_subseq/seqtk_subseq b/target/executable/seqtk/seqtk_subseq/seqtk_subseq index b8dc2d36..497aa592 100755 --- a/target/executable/seqtk/seqtk_subseq/seqtk_subseq +++ b/target/executable/seqtk/seqtk_subseq/seqtk_subseq @@ -491,9 +491,9 @@ RUN echo $(echo $(seqtk 2>&1) | sed -n 's/.*\(Version: [^ ]*\).*/\1/p') > /var/s LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo" LABEL org.opencontainers.image.description="Companion container for running component seqtk seqtk_subseq" -LABEL org.opencontainers.image.created="2024-11-13T14:00:27Z" +LABEL org.opencontainers.image.created="2024-11-14T12:50:41Z" LABEL org.opencontainers.image.source="https://github.com/lh3/seqtk/tree/v1.4" -LABEL org.opencontainers.image.revision="dd75d6f397b5865acc31c39e7b613f8fb2989757" +LABEL org.opencontainers.image.revision="402ad6a813c0d0b141bbf8f9a3aab9c270a74812" LABEL org.opencontainers.image.version="add_sgdemux" VIASHDOCKER diff --git a/target/executable/sgdemux/.config.vsh.yaml b/target/executable/sgdemux/.config.vsh.yaml index 5b9114c0..d5e08ad9 100644 --- a/target/executable/sgdemux/.config.vsh.yaml +++ b/target/executable/sgdemux/.config.vsh.yaml @@ -429,9 +429,9 @@ build_info: output: "target/executable/sgdemux" executable: "target/executable/sgdemux/sgdemux" viash_version: "0.9.0" - git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757" - git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox" - git_tag: "v0.2.0-26-gdd75d6f" + git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812" + git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-27-g402ad6a" package_config: name: "biobox" version: "add_sgdemux" diff --git a/target/executable/sgdemux/sgdemux b/target/executable/sgdemux/sgdemux index f67d0526..61138741 100755 --- a/target/executable/sgdemux/sgdemux +++ b/target/executable/sgdemux/sgdemux @@ -631,9 +631,9 @@ echo "sgdemux: $(sgdemux --version | cut -d' ' -f2)" > /var/software_versions.tx LABEL org.opencontainers.image.authors="Dries Schaumont" LABEL org.opencontainers.image.description="Companion container for running component sgdemux" -LABEL org.opencontainers.image.created="2024-11-13T14:00:30Z" +LABEL org.opencontainers.image.created="2024-11-14T12:50:44Z" LABEL org.opencontainers.image.source="https://github.com/Singular-Genomics/singular-demux" -LABEL org.opencontainers.image.revision="dd75d6f397b5865acc31c39e7b613f8fb2989757" +LABEL org.opencontainers.image.revision="402ad6a813c0d0b141bbf8f9a3aab9c270a74812" LABEL org.opencontainers.image.version="add_sgdemux" VIASHDOCKER @@ -1790,10 +1790,32 @@ if [ "\$par_most_unmatched_to_output" -eq "0" ] && [ ! -z "\$par_most_frequent_u exit 1 fi +# The sgdemux documentation recommends the following settings: +# 1/3 of available threads for compression +# 1/6 of available threads for writing +# 1/6-1/3 of available threads for demultiplexing +declare -A thread_settings=(["compression_threads"]="3" + ["writing_threads"]="6" + ["demultiplexing_threads"]="3" + ) +if [ ! -z "\$meta_cpus" ]; then + for setting_var in "\${!thread_settings[@]}"; do + denominator=\${thread_settings[\$setting_var]} + result=\$(( \$meta_cpus / \$denominator )) + if (( \$result == 0 )); then + result=1 + fi + declare \$setting_var=\$result + done +fi + args=( --fastqs \${fastqs[@]} --sample-metadata "\$par_sample_metadata" --output-dir "\$TMPDIR" + \${demultiplexing_threads:+--demux-threads \$demultiplexing_threads} + \${writing_threads:+--writer-threads \$writing_threads} + \${compression_threads:+--compressor-threads \$compression_threads} \${par_allowed_mismatches:+--allowed-mismatches \$par_allowed_mismatches} \${par_min_delta:+--min-delta \$par_min_delta} \${par_free_ns:+--free-ns \$par_free_ns} diff --git a/target/executable/snpeff/.config.vsh.yaml b/target/executable/snpeff/.config.vsh.yaml index 39cbb611..b9c622f0 100644 --- a/target/executable/snpeff/.config.vsh.yaml +++ b/target/executable/snpeff/.config.vsh.yaml @@ -628,9 +628,9 @@ build_info: output: "target/executable/snpeff" executable: "target/executable/snpeff/snpeff" viash_version: "0.9.0" - git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757" - git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox" - git_tag: "v0.2.0-26-gdd75d6f" + git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812" + git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-27-g402ad6a" package_config: name: "biobox" version: "add_sgdemux" diff --git a/target/executable/snpeff/snpeff b/target/executable/snpeff/snpeff index 36531445..3f862c08 100755 --- a/target/executable/snpeff/snpeff +++ b/target/executable/snpeff/snpeff @@ -756,9 +756,9 @@ version_trimmed=$(echo "$version" | awk '{print $1, $2}') && \ echo "$version_trimmed" > /var/software_versions.txt LABEL org.opencontainers.image.description="Companion container for running component snpeff" -LABEL org.opencontainers.image.created="2024-11-13T14:00:26Z" +LABEL org.opencontainers.image.created="2024-11-14T12:50:40Z" LABEL org.opencontainers.image.source="https://github.com/pcingola/SnpEff" -LABEL org.opencontainers.image.revision="dd75d6f397b5865acc31c39e7b613f8fb2989757" +LABEL org.opencontainers.image.revision="402ad6a813c0d0b141bbf8f9a3aab9c270a74812" LABEL org.opencontainers.image.version="add_sgdemux" VIASHDOCKER diff --git a/target/executable/sortmerna/.config.vsh.yaml b/target/executable/sortmerna/.config.vsh.yaml index 72bc1c37..54348a63 100644 --- a/target/executable/sortmerna/.config.vsh.yaml +++ b/target/executable/sortmerna/.config.vsh.yaml @@ -594,9 +594,9 @@ build_info: output: "target/executable/sortmerna" executable: "target/executable/sortmerna/sortmerna" viash_version: "0.9.0" - git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757" - git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox" - git_tag: "v0.2.0-26-gdd75d6f" + git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812" + git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-27-g402ad6a" package_config: name: "biobox" version: "add_sgdemux" diff --git a/target/executable/sortmerna/sortmerna b/target/executable/sortmerna/sortmerna index 1deb5f29..22f14bdb 100755 --- a/target/executable/sortmerna/sortmerna +++ b/target/executable/sortmerna/sortmerna @@ -740,9 +740,9 @@ ENTRYPOINT [] RUN echo SortMeRNA: `sortmerna --version | sed -n 's/.*version \([0-9]\+\.[0-9]\+\.[0-9]\+\).*/\1/p'` LABEL org.opencontainers.image.description="Companion container for running component sortmerna" -LABEL org.opencontainers.image.created="2024-11-13T14:00:28Z" +LABEL org.opencontainers.image.created="2024-11-14T12:50:41Z" LABEL org.opencontainers.image.source="https://github.com/sortmerna/sortmerna" -LABEL org.opencontainers.image.revision="dd75d6f397b5865acc31c39e7b613f8fb2989757" +LABEL org.opencontainers.image.revision="402ad6a813c0d0b141bbf8f9a3aab9c270a74812" LABEL org.opencontainers.image.version="add_sgdemux" VIASHDOCKER diff --git a/target/executable/star/star_align_reads/.config.vsh.yaml b/target/executable/star/star_align_reads/.config.vsh.yaml index a77ad766..e692f927 100644 --- a/target/executable/star/star_align_reads/.config.vsh.yaml +++ b/target/executable/star/star_align_reads/.config.vsh.yaml @@ -2663,9 +2663,9 @@ build_info: output: "target/executable/star/star_align_reads" executable: "target/executable/star/star_align_reads/star_align_reads" viash_version: "0.9.0" - git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757" - git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox" - git_tag: "v0.2.0-26-gdd75d6f" + git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812" + git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-27-g402ad6a" package_config: name: "biobox" version: "add_sgdemux" diff --git a/target/executable/star/star_align_reads/star_align_reads b/target/executable/star/star_align_reads/star_align_reads index 187e2c7a..9c907a34 100755 --- a/target/executable/star/star_align_reads/star_align_reads +++ b/target/executable/star/star_align_reads/star_align_reads @@ -1920,9 +1920,9 @@ RUN STAR --version | sed 's#\(.*\)#star: "\1"#' > /var/software_versions.txt LABEL org.opencontainers.image.authors="Angela Oliveira Pisco, Robrecht Cannoodt" LABEL org.opencontainers.image.description="Companion container for running component star star_align_reads" -LABEL org.opencontainers.image.created="2024-11-13T14:00:25Z" +LABEL org.opencontainers.image.created="2024-11-14T12:50:39Z" LABEL org.opencontainers.image.source="https://github.com/alexdobin/STAR" -LABEL org.opencontainers.image.revision="dd75d6f397b5865acc31c39e7b613f8fb2989757" +LABEL org.opencontainers.image.revision="402ad6a813c0d0b141bbf8f9a3aab9c270a74812" LABEL org.opencontainers.image.version="add_sgdemux" VIASHDOCKER diff --git a/target/executable/star/star_genome_generate/.config.vsh.yaml b/target/executable/star/star_genome_generate/.config.vsh.yaml index 9dc9bc8c..3b4c7cd2 100644 --- a/target/executable/star/star_genome_generate/.config.vsh.yaml +++ b/target/executable/star/star_genome_generate/.config.vsh.yaml @@ -333,9 +333,9 @@ build_info: output: "target/executable/star/star_genome_generate" executable: "target/executable/star/star_genome_generate/star_genome_generate" viash_version: "0.9.0" - git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757" - git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox" - git_tag: "v0.2.0-26-gdd75d6f" + git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812" + git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-27-g402ad6a" package_config: name: "biobox" version: "add_sgdemux" diff --git a/target/executable/star/star_genome_generate/star_genome_generate b/target/executable/star/star_genome_generate/star_genome_generate index 5731f90e..890fc394 100755 --- a/target/executable/star/star_genome_generate/star_genome_generate +++ b/target/executable/star/star_genome_generate/star_genome_generate @@ -577,9 +577,9 @@ RUN STAR --version | sed 's#\(.*\)#star: "\1"#' > /var/software_versions.txt LABEL org.opencontainers.image.authors="Sai Nirmayi Yasa" LABEL org.opencontainers.image.description="Companion container for running component star star_genome_generate" -LABEL org.opencontainers.image.created="2024-11-13T14:00:26Z" +LABEL org.opencontainers.image.created="2024-11-14T12:50:40Z" LABEL org.opencontainers.image.source="https://github.com/alexdobin/STAR" -LABEL org.opencontainers.image.revision="dd75d6f397b5865acc31c39e7b613f8fb2989757" +LABEL org.opencontainers.image.revision="402ad6a813c0d0b141bbf8f9a3aab9c270a74812" LABEL org.opencontainers.image.version="add_sgdemux" VIASHDOCKER diff --git a/target/executable/trimgalore/.config.vsh.yaml b/target/executable/trimgalore/.config.vsh.yaml index 19bcf1c1..6ec68af3 100644 --- a/target/executable/trimgalore/.config.vsh.yaml +++ b/target/executable/trimgalore/.config.vsh.yaml @@ -770,9 +770,9 @@ build_info: output: "target/executable/trimgalore" executable: "target/executable/trimgalore/trimgalore" viash_version: "0.9.0" - git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757" - git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox" - git_tag: "v0.2.0-26-gdd75d6f" + git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812" + git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-27-g402ad6a" package_config: name: "biobox" version: "add_sgdemux" diff --git a/target/executable/trimgalore/trimgalore b/target/executable/trimgalore/trimgalore index cc379abe..9591e86b 100755 --- a/target/executable/trimgalore/trimgalore +++ b/target/executable/trimgalore/trimgalore @@ -881,9 +881,9 @@ RUN echo "TrimGalore: `trim_galore --version | sed -n 's/.*version\s\+\([0-9]\+\ LABEL org.opencontainers.image.authors="Sai Nirmayi Yasa" LABEL org.opencontainers.image.description="Companion container for running component trimgalore" -LABEL org.opencontainers.image.created="2024-11-13T14:00:27Z" +LABEL org.opencontainers.image.created="2024-11-14T12:50:41Z" LABEL org.opencontainers.image.source="https://github.com/FelixKrueger/TrimGalore" -LABEL org.opencontainers.image.revision="dd75d6f397b5865acc31c39e7b613f8fb2989757" +LABEL org.opencontainers.image.revision="402ad6a813c0d0b141bbf8f9a3aab9c270a74812" LABEL org.opencontainers.image.version="add_sgdemux" VIASHDOCKER diff --git a/target/executable/umi_tools/umi_tools_dedup/.config.vsh.yaml b/target/executable/umi_tools/umi_tools_dedup/.config.vsh.yaml index 7cc0b274..3349c32a 100644 --- a/target/executable/umi_tools/umi_tools_dedup/.config.vsh.yaml +++ b/target/executable/umi_tools/umi_tools_dedup/.config.vsh.yaml @@ -611,9 +611,9 @@ build_info: output: "target/executable/umi_tools/umi_tools_dedup" executable: "target/executable/umi_tools/umi_tools_dedup/umi_tools_dedup" viash_version: "0.9.0" - git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757" - git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox" - git_tag: "v0.2.0-26-gdd75d6f" + git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812" + git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-27-g402ad6a" package_config: name: "biobox" version: "add_sgdemux" diff --git a/target/executable/umi_tools/umi_tools_dedup/umi_tools_dedup b/target/executable/umi_tools/umi_tools_dedup/umi_tools_dedup index 27461e58..b1aa0551 100755 --- a/target/executable/umi_tools/umi_tools_dedup/umi_tools_dedup +++ b/target/executable/umi_tools/umi_tools_dedup/umi_tools_dedup @@ -770,9 +770,9 @@ RUN umi_tools -v | sed 's/ version//g' > /var/software_versions.txt LABEL org.opencontainers.image.authors="Emma Rousseau" LABEL org.opencontainers.image.description="Companion container for running component umi_tools umi_tools_dedup" -LABEL org.opencontainers.image.created="2024-11-13T14:00:28Z" +LABEL org.opencontainers.image.created="2024-11-14T12:50:42Z" LABEL org.opencontainers.image.source="https://github.com/CGATOxford/UMI-tools" -LABEL org.opencontainers.image.revision="dd75d6f397b5865acc31c39e7b613f8fb2989757" +LABEL org.opencontainers.image.revision="402ad6a813c0d0b141bbf8f9a3aab9c270a74812" LABEL org.opencontainers.image.version="add_sgdemux" VIASHDOCKER diff --git a/target/executable/umi_tools/umi_tools_extract/.config.vsh.yaml b/target/executable/umi_tools/umi_tools_extract/.config.vsh.yaml index 7a4810f4..7f1a2607 100644 --- a/target/executable/umi_tools/umi_tools_extract/.config.vsh.yaml +++ b/target/executable/umi_tools/umi_tools_extract/.config.vsh.yaml @@ -434,9 +434,9 @@ build_info: output: "target/executable/umi_tools/umi_tools_extract" executable: "target/executable/umi_tools/umi_tools_extract/umi_tools_extract" viash_version: "0.9.0" - git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757" - git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox" - git_tag: "v0.2.0-26-gdd75d6f" + git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812" + git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-27-g402ad6a" package_config: name: "biobox" version: "add_sgdemux" diff --git a/target/executable/umi_tools/umi_tools_extract/umi_tools_extract b/target/executable/umi_tools/umi_tools_extract/umi_tools_extract index ba5e5b7a..11228e37 100755 --- a/target/executable/umi_tools/umi_tools_extract/umi_tools_extract +++ b/target/executable/umi_tools/umi_tools_extract/umi_tools_extract @@ -630,9 +630,9 @@ ENTRYPOINT [] RUN umi_tools -v | sed 's/ version//g' > /var/software_versions.txt LABEL org.opencontainers.image.description="Companion container for running component umi_tools umi_tools_extract" -LABEL org.opencontainers.image.created="2024-11-13T14:00:28Z" +LABEL org.opencontainers.image.created="2024-11-14T12:50:41Z" LABEL org.opencontainers.image.source="https://github.com/CGATOxford/UMI-tools" -LABEL org.opencontainers.image.revision="dd75d6f397b5865acc31c39e7b613f8fb2989757" +LABEL org.opencontainers.image.revision="402ad6a813c0d0b141bbf8f9a3aab9c270a74812" LABEL org.opencontainers.image.version="add_sgdemux" VIASHDOCKER diff --git a/target/executable/umi_tools/umi_tools_prepareforrsem/.config.vsh.yaml b/target/executable/umi_tools/umi_tools_prepareforrsem/.config.vsh.yaml index c48141f0..44684d24 100644 --- a/target/executable/umi_tools/umi_tools_prepareforrsem/.config.vsh.yaml +++ b/target/executable/umi_tools/umi_tools_prepareforrsem/.config.vsh.yaml @@ -256,9 +256,9 @@ build_info: output: "target/executable/umi_tools/umi_tools_prepareforrsem" executable: "target/executable/umi_tools/umi_tools_prepareforrsem/umi_tools_prepareforrsem" viash_version: "0.9.0" - git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757" - git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox" - git_tag: "v0.2.0-26-gdd75d6f" + git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812" + git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-27-g402ad6a" package_config: name: "biobox" version: "add_sgdemux" diff --git a/target/executable/umi_tools/umi_tools_prepareforrsem/umi_tools_prepareforrsem b/target/executable/umi_tools/umi_tools_prepareforrsem/umi_tools_prepareforrsem index 104b023f..368f991f 100755 --- a/target/executable/umi_tools/umi_tools_prepareforrsem/umi_tools_prepareforrsem +++ b/target/executable/umi_tools/umi_tools_prepareforrsem/umi_tools_prepareforrsem @@ -519,9 +519,9 @@ ENTRYPOINT [] RUN umi_tools -v | sed 's/ version//g' > /var/software_versions.txt LABEL org.opencontainers.image.description="Companion container for running component umi_tools umi_tools_prepareforrsem" -LABEL org.opencontainers.image.created="2024-11-13T14:00:29Z" +LABEL org.opencontainers.image.created="2024-11-14T12:50:42Z" LABEL org.opencontainers.image.source="https://github.com/CGATOxford/UMI-tools" -LABEL org.opencontainers.image.revision="dd75d6f397b5865acc31c39e7b613f8fb2989757" +LABEL org.opencontainers.image.revision="402ad6a813c0d0b141bbf8f9a3aab9c270a74812" LABEL org.opencontainers.image.version="add_sgdemux" VIASHDOCKER diff --git a/target/nextflow/agat/agat_convert_bed2gff/.config.vsh.yaml b/target/nextflow/agat/agat_convert_bed2gff/.config.vsh.yaml index 778fe7d7..fb837657 100644 --- a/target/nextflow/agat/agat_convert_bed2gff/.config.vsh.yaml +++ b/target/nextflow/agat/agat_convert_bed2gff/.config.vsh.yaml @@ -235,9 +235,9 @@ build_info: output: "target/nextflow/agat/agat_convert_bed2gff" executable: "target/nextflow/agat/agat_convert_bed2gff/main.nf" viash_version: "0.9.0" - git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757" - git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox" - git_tag: "v0.2.0-26-gdd75d6f" + git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812" + git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-27-g402ad6a" package_config: name: "biobox" version: "add_sgdemux" diff --git a/target/nextflow/agat/agat_convert_bed2gff/main.nf b/target/nextflow/agat/agat_convert_bed2gff/main.nf index 82b84613..32b11f92 100644 --- a/target/nextflow/agat/agat_convert_bed2gff/main.nf +++ b/target/nextflow/agat/agat_convert_bed2gff/main.nf @@ -3092,9 +3092,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/agat/agat_convert_bed2gff", "viash_version" : "0.9.0", - "git_commit" : "dd75d6f397b5865acc31c39e7b613f8fb2989757", - "git_remote" : "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-26-gdd75d6f" + "git_commit" : "402ad6a813c0d0b141bbf8f9a3aab9c270a74812", + "git_remote" : "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-27-g402ad6a" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/agat/agat_convert_embl2gff/.config.vsh.yaml b/target/nextflow/agat/agat_convert_embl2gff/.config.vsh.yaml index 36cfee27..ba1b8e81 100644 --- a/target/nextflow/agat/agat_convert_embl2gff/.config.vsh.yaml +++ b/target/nextflow/agat/agat_convert_embl2gff/.config.vsh.yaml @@ -225,9 +225,9 @@ build_info: output: "target/nextflow/agat/agat_convert_embl2gff" executable: "target/nextflow/agat/agat_convert_embl2gff/main.nf" viash_version: "0.9.0" - git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757" - git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox" - git_tag: "v0.2.0-26-gdd75d6f" + git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812" + git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-27-g402ad6a" package_config: name: "biobox" version: "add_sgdemux" diff --git a/target/nextflow/agat/agat_convert_embl2gff/main.nf b/target/nextflow/agat/agat_convert_embl2gff/main.nf index 91e1123a..40d63614 100644 --- a/target/nextflow/agat/agat_convert_embl2gff/main.nf +++ b/target/nextflow/agat/agat_convert_embl2gff/main.nf @@ -3085,9 +3085,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/agat/agat_convert_embl2gff", "viash_version" : "0.9.0", - "git_commit" : "dd75d6f397b5865acc31c39e7b613f8fb2989757", - "git_remote" : "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-26-gdd75d6f" + "git_commit" : "402ad6a813c0d0b141bbf8f9a3aab9c270a74812", + "git_remote" : "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-27-g402ad6a" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/agat/agat_convert_genscan2gff/.config.vsh.yaml b/target/nextflow/agat/agat_convert_genscan2gff/.config.vsh.yaml index 9492644a..08a35766 100644 --- a/target/nextflow/agat/agat_convert_genscan2gff/.config.vsh.yaml +++ b/target/nextflow/agat/agat_convert_genscan2gff/.config.vsh.yaml @@ -230,9 +230,9 @@ build_info: output: "target/nextflow/agat/agat_convert_genscan2gff" executable: "target/nextflow/agat/agat_convert_genscan2gff/main.nf" viash_version: "0.9.0" - git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757" - git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox" - git_tag: "v0.2.0-26-gdd75d6f" + git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812" + git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-27-g402ad6a" package_config: name: "biobox" version: "add_sgdemux" diff --git a/target/nextflow/agat/agat_convert_genscan2gff/main.nf b/target/nextflow/agat/agat_convert_genscan2gff/main.nf index e76839d0..413cbf6f 100644 --- a/target/nextflow/agat/agat_convert_genscan2gff/main.nf +++ b/target/nextflow/agat/agat_convert_genscan2gff/main.nf @@ -3087,9 +3087,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/agat/agat_convert_genscan2gff", "viash_version" : "0.9.0", - "git_commit" : "dd75d6f397b5865acc31c39e7b613f8fb2989757", - "git_remote" : "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-26-gdd75d6f" + "git_commit" : "402ad6a813c0d0b141bbf8f9a3aab9c270a74812", + "git_remote" : "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-27-g402ad6a" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/agat/agat_convert_mfannot2gff/.config.vsh.yaml b/target/nextflow/agat/agat_convert_mfannot2gff/.config.vsh.yaml index a95e95ec..c5578aac 100644 --- a/target/nextflow/agat/agat_convert_mfannot2gff/.config.vsh.yaml +++ b/target/nextflow/agat/agat_convert_mfannot2gff/.config.vsh.yaml @@ -186,9 +186,9 @@ build_info: output: "target/nextflow/agat/agat_convert_mfannot2gff" executable: "target/nextflow/agat/agat_convert_mfannot2gff/main.nf" viash_version: "0.9.0" - git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757" - git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox" - git_tag: "v0.2.0-26-gdd75d6f" + git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812" + git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-27-g402ad6a" package_config: name: "biobox" version: "add_sgdemux" diff --git a/target/nextflow/agat/agat_convert_mfannot2gff/main.nf b/target/nextflow/agat/agat_convert_mfannot2gff/main.nf index 697dc91a..0f857c49 100644 --- a/target/nextflow/agat/agat_convert_mfannot2gff/main.nf +++ b/target/nextflow/agat/agat_convert_mfannot2gff/main.nf @@ -3047,9 +3047,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/agat/agat_convert_mfannot2gff", "viash_version" : "0.9.0", - "git_commit" : "dd75d6f397b5865acc31c39e7b613f8fb2989757", - "git_remote" : "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-26-gdd75d6f" + "git_commit" : "402ad6a813c0d0b141bbf8f9a3aab9c270a74812", + "git_remote" : "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-27-g402ad6a" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/agat/agat_convert_sp_gff2gtf/.config.vsh.yaml b/target/nextflow/agat/agat_convert_sp_gff2gtf/.config.vsh.yaml index 2ceb1807..f28c00c7 100644 --- a/target/nextflow/agat/agat_convert_sp_gff2gtf/.config.vsh.yaml +++ b/target/nextflow/agat/agat_convert_sp_gff2gtf/.config.vsh.yaml @@ -228,9 +228,9 @@ build_info: output: "target/nextflow/agat/agat_convert_sp_gff2gtf" executable: "target/nextflow/agat/agat_convert_sp_gff2gtf/main.nf" viash_version: "0.9.0" - git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757" - git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox" - git_tag: "v0.2.0-26-gdd75d6f" + git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812" + git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-27-g402ad6a" package_config: name: "biobox" version: "add_sgdemux" diff --git a/target/nextflow/agat/agat_convert_sp_gff2gtf/main.nf b/target/nextflow/agat/agat_convert_sp_gff2gtf/main.nf index c8559891..841c1f77 100644 --- a/target/nextflow/agat/agat_convert_sp_gff2gtf/main.nf +++ b/target/nextflow/agat/agat_convert_sp_gff2gtf/main.nf @@ -3068,9 +3068,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/agat/agat_convert_sp_gff2gtf", "viash_version" : "0.9.0", - "git_commit" : "dd75d6f397b5865acc31c39e7b613f8fb2989757", - "git_remote" : "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-26-gdd75d6f" + "git_commit" : "402ad6a813c0d0b141bbf8f9a3aab9c270a74812", + "git_remote" : "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-27-g402ad6a" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/agat/agat_convert_sp_gff2tsv/.config.vsh.yaml b/target/nextflow/agat/agat_convert_sp_gff2tsv/.config.vsh.yaml index 8b916fb8..f5148fa7 100644 --- a/target/nextflow/agat/agat_convert_sp_gff2tsv/.config.vsh.yaml +++ b/target/nextflow/agat/agat_convert_sp_gff2tsv/.config.vsh.yaml @@ -188,9 +188,9 @@ build_info: output: "target/nextflow/agat/agat_convert_sp_gff2tsv" executable: "target/nextflow/agat/agat_convert_sp_gff2tsv/main.nf" viash_version: "0.9.0" - git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757" - git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox" - git_tag: "v0.2.0-26-gdd75d6f" + git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812" + git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-27-g402ad6a" package_config: name: "biobox" version: "add_sgdemux" diff --git a/target/nextflow/agat/agat_convert_sp_gff2tsv/main.nf b/target/nextflow/agat/agat_convert_sp_gff2tsv/main.nf index 81d2437d..01540196 100644 --- a/target/nextflow/agat/agat_convert_sp_gff2tsv/main.nf +++ b/target/nextflow/agat/agat_convert_sp_gff2tsv/main.nf @@ -3046,9 +3046,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/agat/agat_convert_sp_gff2tsv", "viash_version" : "0.9.0", - "git_commit" : "dd75d6f397b5865acc31c39e7b613f8fb2989757", - "git_remote" : "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-26-gdd75d6f" + "git_commit" : "402ad6a813c0d0b141bbf8f9a3aab9c270a74812", + "git_remote" : "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-27-g402ad6a" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/agat/agat_convert_sp_gxf2gxf/.config.vsh.yaml b/target/nextflow/agat/agat_convert_sp_gxf2gxf/.config.vsh.yaml index 07fe1edf..bb81fdcf 100644 --- a/target/nextflow/agat/agat_convert_sp_gxf2gxf/.config.vsh.yaml +++ b/target/nextflow/agat/agat_convert_sp_gxf2gxf/.config.vsh.yaml @@ -195,9 +195,9 @@ build_info: output: "target/nextflow/agat/agat_convert_sp_gxf2gxf" executable: "target/nextflow/agat/agat_convert_sp_gxf2gxf/main.nf" viash_version: "0.9.0" - git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757" - git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox" - git_tag: "v0.2.0-26-gdd75d6f" + git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812" + git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-27-g402ad6a" package_config: name: "biobox" version: "add_sgdemux" diff --git a/target/nextflow/agat/agat_convert_sp_gxf2gxf/main.nf b/target/nextflow/agat/agat_convert_sp_gxf2gxf/main.nf index 60be688f..1b9b6e6e 100644 --- a/target/nextflow/agat/agat_convert_sp_gxf2gxf/main.nf +++ b/target/nextflow/agat/agat_convert_sp_gxf2gxf/main.nf @@ -3046,9 +3046,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/agat/agat_convert_sp_gxf2gxf", "viash_version" : "0.9.0", - "git_commit" : "dd75d6f397b5865acc31c39e7b613f8fb2989757", - "git_remote" : "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-26-gdd75d6f" + "git_commit" : "402ad6a813c0d0b141bbf8f9a3aab9c270a74812", + "git_remote" : "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-27-g402ad6a" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/agat/agat_sp_add_introns/.config.vsh.yaml b/target/nextflow/agat/agat_sp_add_introns/.config.vsh.yaml index 64c3abc4..efaa5191 100644 --- a/target/nextflow/agat/agat_sp_add_introns/.config.vsh.yaml +++ b/target/nextflow/agat/agat_sp_add_introns/.config.vsh.yaml @@ -186,9 +186,9 @@ build_info: output: "target/nextflow/agat/agat_sp_add_introns" executable: "target/nextflow/agat/agat_sp_add_introns/main.nf" viash_version: "0.9.0" - git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757" - git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox" - git_tag: "v0.2.0-26-gdd75d6f" + git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812" + git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-27-g402ad6a" package_config: name: "biobox" version: "add_sgdemux" diff --git a/target/nextflow/agat/agat_sp_add_introns/main.nf b/target/nextflow/agat/agat_sp_add_introns/main.nf index 1e09d447..339e0fdd 100644 --- a/target/nextflow/agat/agat_sp_add_introns/main.nf +++ b/target/nextflow/agat/agat_sp_add_introns/main.nf @@ -3049,9 +3049,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/agat/agat_sp_add_introns", "viash_version" : "0.9.0", - "git_commit" : "dd75d6f397b5865acc31c39e7b613f8fb2989757", - "git_remote" : "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-26-gdd75d6f" + "git_commit" : "402ad6a813c0d0b141bbf8f9a3aab9c270a74812", + "git_remote" : "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-27-g402ad6a" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/agat/agat_sp_filter_feature_from_kill_list/.config.vsh.yaml b/target/nextflow/agat/agat_sp_filter_feature_from_kill_list/.config.vsh.yaml index 84c55d04..f4b0d651 100644 --- a/target/nextflow/agat/agat_sp_filter_feature_from_kill_list/.config.vsh.yaml +++ b/target/nextflow/agat/agat_sp_filter_feature_from_kill_list/.config.vsh.yaml @@ -236,9 +236,9 @@ build_info: output: "target/nextflow/agat/agat_sp_filter_feature_from_kill_list" executable: "target/nextflow/agat/agat_sp_filter_feature_from_kill_list/main.nf" viash_version: "0.9.0" - git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757" - git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox" - git_tag: "v0.2.0-26-gdd75d6f" + git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812" + git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-27-g402ad6a" package_config: name: "biobox" version: "add_sgdemux" diff --git a/target/nextflow/agat/agat_sp_filter_feature_from_kill_list/main.nf b/target/nextflow/agat/agat_sp_filter_feature_from_kill_list/main.nf index fe8ce6f5..706bce3c 100644 --- a/target/nextflow/agat/agat_sp_filter_feature_from_kill_list/main.nf +++ b/target/nextflow/agat/agat_sp_filter_feature_from_kill_list/main.nf @@ -3096,9 +3096,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/agat/agat_sp_filter_feature_from_kill_list", "viash_version" : "0.9.0", - "git_commit" : "dd75d6f397b5865acc31c39e7b613f8fb2989757", - "git_remote" : "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-26-gdd75d6f" + "git_commit" : "402ad6a813c0d0b141bbf8f9a3aab9c270a74812", + "git_remote" : "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-27-g402ad6a" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/agat/agat_sp_merge_annotations/.config.vsh.yaml b/target/nextflow/agat/agat_sp_merge_annotations/.config.vsh.yaml index 14c36cb2..f99cb9a8 100644 --- a/target/nextflow/agat/agat_sp_merge_annotations/.config.vsh.yaml +++ b/target/nextflow/agat/agat_sp_merge_annotations/.config.vsh.yaml @@ -184,9 +184,9 @@ build_info: output: "target/nextflow/agat/agat_sp_merge_annotations" executable: "target/nextflow/agat/agat_sp_merge_annotations/main.nf" viash_version: "0.9.0" - git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757" - git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox" - git_tag: "v0.2.0-26-gdd75d6f" + git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812" + git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-27-g402ad6a" package_config: name: "biobox" version: "add_sgdemux" diff --git a/target/nextflow/agat/agat_sp_merge_annotations/main.nf b/target/nextflow/agat/agat_sp_merge_annotations/main.nf index 4b4271bc..66546b1a 100644 --- a/target/nextflow/agat/agat_sp_merge_annotations/main.nf +++ b/target/nextflow/agat/agat_sp_merge_annotations/main.nf @@ -3046,9 +3046,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/agat/agat_sp_merge_annotations", "viash_version" : "0.9.0", - "git_commit" : "dd75d6f397b5865acc31c39e7b613f8fb2989757", - "git_remote" : "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-26-gdd75d6f" + "git_commit" : "402ad6a813c0d0b141bbf8f9a3aab9c270a74812", + "git_remote" : "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-27-g402ad6a" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/agat/agat_sp_statistics/.config.vsh.yaml b/target/nextflow/agat/agat_sp_statistics/.config.vsh.yaml index f26b3891..fcb6dd7b 100644 --- a/target/nextflow/agat/agat_sp_statistics/.config.vsh.yaml +++ b/target/nextflow/agat/agat_sp_statistics/.config.vsh.yaml @@ -231,9 +231,9 @@ build_info: output: "target/nextflow/agat/agat_sp_statistics" executable: "target/nextflow/agat/agat_sp_statistics/main.nf" viash_version: "0.9.0" - git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757" - git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox" - git_tag: "v0.2.0-26-gdd75d6f" + git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812" + git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-27-g402ad6a" package_config: name: "biobox" version: "add_sgdemux" diff --git a/target/nextflow/agat/agat_sp_statistics/main.nf b/target/nextflow/agat/agat_sp_statistics/main.nf index ee50722f..caf34a4d 100644 --- a/target/nextflow/agat/agat_sp_statistics/main.nf +++ b/target/nextflow/agat/agat_sp_statistics/main.nf @@ -3096,9 +3096,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/agat/agat_sp_statistics", "viash_version" : "0.9.0", - "git_commit" : "dd75d6f397b5865acc31c39e7b613f8fb2989757", - "git_remote" : "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-26-gdd75d6f" + "git_commit" : "402ad6a813c0d0b141bbf8f9a3aab9c270a74812", + "git_remote" : "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-27-g402ad6a" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/agat/agat_sq_stat_basic/.config.vsh.yaml b/target/nextflow/agat/agat_sq_stat_basic/.config.vsh.yaml index 9697ebde..816cac35 100644 --- a/target/nextflow/agat/agat_sq_stat_basic/.config.vsh.yaml +++ b/target/nextflow/agat/agat_sq_stat_basic/.config.vsh.yaml @@ -227,9 +227,9 @@ build_info: output: "target/nextflow/agat/agat_sq_stat_basic" executable: "target/nextflow/agat/agat_sq_stat_basic/main.nf" viash_version: "0.9.0" - git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757" - git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox" - git_tag: "v0.2.0-26-gdd75d6f" + git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812" + git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-27-g402ad6a" package_config: name: "biobox" version: "add_sgdemux" diff --git a/target/nextflow/agat/agat_sq_stat_basic/main.nf b/target/nextflow/agat/agat_sq_stat_basic/main.nf index 52c4b0b1..30fcf848 100644 --- a/target/nextflow/agat/agat_sq_stat_basic/main.nf +++ b/target/nextflow/agat/agat_sq_stat_basic/main.nf @@ -3082,9 +3082,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/agat/agat_sq_stat_basic", "viash_version" : "0.9.0", - "git_commit" : "dd75d6f397b5865acc31c39e7b613f8fb2989757", - "git_remote" : "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-26-gdd75d6f" + "git_commit" : "402ad6a813c0d0b141bbf8f9a3aab9c270a74812", + "git_remote" : "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-27-g402ad6a" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/arriba/.config.vsh.yaml b/target/nextflow/arriba/.config.vsh.yaml index 6f91e4e3..97f1b3e6 100644 --- a/target/nextflow/arriba/.config.vsh.yaml +++ b/target/nextflow/arriba/.config.vsh.yaml @@ -706,9 +706,9 @@ build_info: output: "target/nextflow/arriba" executable: "target/nextflow/arriba/main.nf" viash_version: "0.9.0" - git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757" - git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox" - git_tag: "v0.2.0-26-gdd75d6f" + git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812" + git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-27-g402ad6a" package_config: name: "biobox" version: "add_sgdemux" diff --git a/target/nextflow/arriba/main.nf b/target/nextflow/arriba/main.nf index 93e4a9af..fa1ea1a5 100644 --- a/target/nextflow/arriba/main.nf +++ b/target/nextflow/arriba/main.nf @@ -3592,9 +3592,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/arriba", "viash_version" : "0.9.0", - "git_commit" : "dd75d6f397b5865acc31c39e7b613f8fb2989757", - "git_remote" : "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-26-gdd75d6f" + "git_commit" : "402ad6a813c0d0b141bbf8f9a3aab9c270a74812", + "git_remote" : "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-27-g402ad6a" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/bbmap/bbmap_bbsplit/.config.vsh.yaml b/target/nextflow/bbmap/bbmap_bbsplit/.config.vsh.yaml index 17c6679e..7e40b6a8 100644 --- a/target/nextflow/bbmap/bbmap_bbsplit/.config.vsh.yaml +++ b/target/nextflow/bbmap/bbmap_bbsplit/.config.vsh.yaml @@ -368,9 +368,9 @@ build_info: output: "target/nextflow/bbmap/bbmap_bbsplit" executable: "target/nextflow/bbmap/bbmap_bbsplit/main.nf" viash_version: "0.9.0" - git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757" - git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox" - git_tag: "v0.2.0-26-gdd75d6f" + git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812" + git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-27-g402ad6a" package_config: name: "biobox" version: "add_sgdemux" diff --git a/target/nextflow/bbmap/bbmap_bbsplit/main.nf b/target/nextflow/bbmap/bbmap_bbsplit/main.nf index dfdb93ab..736a6d98 100644 --- a/target/nextflow/bbmap/bbmap_bbsplit/main.nf +++ b/target/nextflow/bbmap/bbmap_bbsplit/main.nf @@ -3220,9 +3220,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/bbmap/bbmap_bbsplit", "viash_version" : "0.9.0", - "git_commit" : "dd75d6f397b5865acc31c39e7b613f8fb2989757", - "git_remote" : "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-26-gdd75d6f" + "git_commit" : "402ad6a813c0d0b141bbf8f9a3aab9c270a74812", + "git_remote" : "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-27-g402ad6a" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/bcftools/bcftools_annotate/.config.vsh.yaml b/target/nextflow/bcftools/bcftools_annotate/.config.vsh.yaml index 4f7eca0a..29c7587c 100644 --- a/target/nextflow/bcftools/bcftools_annotate/.config.vsh.yaml +++ b/target/nextflow/bcftools/bcftools_annotate/.config.vsh.yaml @@ -469,9 +469,9 @@ build_info: output: "target/nextflow/bcftools/bcftools_annotate" executable: "target/nextflow/bcftools/bcftools_annotate/main.nf" viash_version: "0.9.0" - git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757" - git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox" - git_tag: "v0.2.0-26-gdd75d6f" + git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812" + git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-27-g402ad6a" package_config: name: "biobox" version: "add_sgdemux" diff --git a/target/nextflow/bcftools/bcftools_annotate/main.nf b/target/nextflow/bcftools/bcftools_annotate/main.nf index f5151b95..09b06f5d 100644 --- a/target/nextflow/bcftools/bcftools_annotate/main.nf +++ b/target/nextflow/bcftools/bcftools_annotate/main.nf @@ -3335,9 +3335,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/bcftools/bcftools_annotate", "viash_version" : "0.9.0", - "git_commit" : "dd75d6f397b5865acc31c39e7b613f8fb2989757", - "git_remote" : "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-26-gdd75d6f" + "git_commit" : "402ad6a813c0d0b141bbf8f9a3aab9c270a74812", + "git_remote" : "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-27-g402ad6a" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/bcftools/bcftools_concat/.config.vsh.yaml b/target/nextflow/bcftools/bcftools_concat/.config.vsh.yaml index ea596174..07463b44 100644 --- a/target/nextflow/bcftools/bcftools_concat/.config.vsh.yaml +++ b/target/nextflow/bcftools/bcftools_concat/.config.vsh.yaml @@ -335,9 +335,9 @@ build_info: output: "target/nextflow/bcftools/bcftools_concat" executable: "target/nextflow/bcftools/bcftools_concat/main.nf" viash_version: "0.9.0" - git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757" - git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox" - git_tag: "v0.2.0-26-gdd75d6f" + git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812" + git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-27-g402ad6a" package_config: name: "biobox" version: "add_sgdemux" diff --git a/target/nextflow/bcftools/bcftools_concat/main.nf b/target/nextflow/bcftools/bcftools_concat/main.nf index 313cd8ac..06040a10 100644 --- a/target/nextflow/bcftools/bcftools_concat/main.nf +++ b/target/nextflow/bcftools/bcftools_concat/main.nf @@ -3207,9 +3207,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/bcftools/bcftools_concat", "viash_version" : "0.9.0", - "git_commit" : "dd75d6f397b5865acc31c39e7b613f8fb2989757", - "git_remote" : "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-26-gdd75d6f" + "git_commit" : "402ad6a813c0d0b141bbf8f9a3aab9c270a74812", + "git_remote" : "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-27-g402ad6a" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/bcftools/bcftools_norm/.config.vsh.yaml b/target/nextflow/bcftools/bcftools_norm/.config.vsh.yaml index 926f3dd6..b30bca6c 100644 --- a/target/nextflow/bcftools/bcftools_norm/.config.vsh.yaml +++ b/target/nextflow/bcftools/bcftools_norm/.config.vsh.yaml @@ -416,9 +416,9 @@ build_info: output: "target/nextflow/bcftools/bcftools_norm" executable: "target/nextflow/bcftools/bcftools_norm/main.nf" viash_version: "0.9.0" - git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757" - git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox" - git_tag: "v0.2.0-26-gdd75d6f" + git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812" + git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-27-g402ad6a" package_config: name: "biobox" version: "add_sgdemux" diff --git a/target/nextflow/bcftools/bcftools_norm/main.nf b/target/nextflow/bcftools/bcftools_norm/main.nf index 64d79953..8e39f473 100644 --- a/target/nextflow/bcftools/bcftools_norm/main.nf +++ b/target/nextflow/bcftools/bcftools_norm/main.nf @@ -3300,9 +3300,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/bcftools/bcftools_norm", "viash_version" : "0.9.0", - "git_commit" : "dd75d6f397b5865acc31c39e7b613f8fb2989757", - "git_remote" : "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-26-gdd75d6f" + "git_commit" : "402ad6a813c0d0b141bbf8f9a3aab9c270a74812", + "git_remote" : "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-27-g402ad6a" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/bcftools/bcftools_sort/.config.vsh.yaml b/target/nextflow/bcftools/bcftools_sort/.config.vsh.yaml index d1b0f23b..612ab606 100644 --- a/target/nextflow/bcftools/bcftools_sort/.config.vsh.yaml +++ b/target/nextflow/bcftools/bcftools_sort/.config.vsh.yaml @@ -185,9 +185,9 @@ build_info: output: "target/nextflow/bcftools/bcftools_sort" executable: "target/nextflow/bcftools/bcftools_sort/main.nf" viash_version: "0.9.0" - git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757" - git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox" - git_tag: "v0.2.0-26-gdd75d6f" + git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812" + git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-27-g402ad6a" package_config: name: "biobox" version: "add_sgdemux" diff --git a/target/nextflow/bcftools/bcftools_sort/main.nf b/target/nextflow/bcftools/bcftools_sort/main.nf index 1a58efbc..e402b51b 100644 --- a/target/nextflow/bcftools/bcftools_sort/main.nf +++ b/target/nextflow/bcftools/bcftools_sort/main.nf @@ -3048,9 +3048,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/bcftools/bcftools_sort", "viash_version" : "0.9.0", - "git_commit" : "dd75d6f397b5865acc31c39e7b613f8fb2989757", - "git_remote" : "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-26-gdd75d6f" + "git_commit" : "402ad6a813c0d0b141bbf8f9a3aab9c270a74812", + "git_remote" : "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-27-g402ad6a" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/bcftools/bcftools_stats/.config.vsh.yaml b/target/nextflow/bcftools/bcftools_stats/.config.vsh.yaml index a4ddf20e..61299854 100644 --- a/target/nextflow/bcftools/bcftools_stats/.config.vsh.yaml +++ b/target/nextflow/bcftools/bcftools_stats/.config.vsh.yaml @@ -458,9 +458,9 @@ build_info: output: "target/nextflow/bcftools/bcftools_stats" executable: "target/nextflow/bcftools/bcftools_stats/main.nf" viash_version: "0.9.0" - git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757" - git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox" - git_tag: "v0.2.0-26-gdd75d6f" + git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812" + git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-27-g402ad6a" package_config: name: "biobox" version: "add_sgdemux" diff --git a/target/nextflow/bcftools/bcftools_stats/main.nf b/target/nextflow/bcftools/bcftools_stats/main.nf index f8f83533..d44188ae 100644 --- a/target/nextflow/bcftools/bcftools_stats/main.nf +++ b/target/nextflow/bcftools/bcftools_stats/main.nf @@ -3337,9 +3337,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/bcftools/bcftools_stats", "viash_version" : "0.9.0", - "git_commit" : "dd75d6f397b5865acc31c39e7b613f8fb2989757", - "git_remote" : "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-26-gdd75d6f" + "git_commit" : "402ad6a813c0d0b141bbf8f9a3aab9c270a74812", + "git_remote" : "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-27-g402ad6a" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/bcl_convert/.config.vsh.yaml b/target/nextflow/bcl_convert/.config.vsh.yaml index 2323dd85..d622a58a 100644 --- a/target/nextflow/bcl_convert/.config.vsh.yaml +++ b/target/nextflow/bcl_convert/.config.vsh.yaml @@ -418,9 +418,9 @@ build_info: output: "target/nextflow/bcl_convert" executable: "target/nextflow/bcl_convert/main.nf" viash_version: "0.9.0" - git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757" - git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox" - git_tag: "v0.2.0-26-gdd75d6f" + git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812" + git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-27-g402ad6a" package_config: name: "biobox" version: "add_sgdemux" diff --git a/target/nextflow/bcl_convert/main.nf b/target/nextflow/bcl_convert/main.nf index f8e1bf34..347e8136 100644 --- a/target/nextflow/bcl_convert/main.nf +++ b/target/nextflow/bcl_convert/main.nf @@ -3329,9 +3329,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/bcl_convert", "viash_version" : "0.9.0", - "git_commit" : "dd75d6f397b5865acc31c39e7b613f8fb2989757", - "git_remote" : "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-26-gdd75d6f" + "git_commit" : "402ad6a813c0d0b141bbf8f9a3aab9c270a74812", + "git_remote" : "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-27-g402ad6a" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/bd_rhapsody/bd_rhapsody_make_reference/.config.vsh.yaml b/target/nextflow/bd_rhapsody/bd_rhapsody_make_reference/.config.vsh.yaml index 989fd247..13b3f931 100644 --- a/target/nextflow/bd_rhapsody/bd_rhapsody_make_reference/.config.vsh.yaml +++ b/target/nextflow/bd_rhapsody/bd_rhapsody_make_reference/.config.vsh.yaml @@ -274,9 +274,9 @@ build_info: output: "target/nextflow/bd_rhapsody/bd_rhapsody_make_reference" executable: "target/nextflow/bd_rhapsody/bd_rhapsody_make_reference/main.nf" viash_version: "0.9.0" - git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757" - git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox" - git_tag: "v0.2.0-26-gdd75d6f" + git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812" + git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-27-g402ad6a" package_config: name: "biobox" version: "add_sgdemux" diff --git a/target/nextflow/bd_rhapsody/bd_rhapsody_make_reference/main.nf b/target/nextflow/bd_rhapsody/bd_rhapsody_make_reference/main.nf index 5ffb7a27..1800e7ed 100644 --- a/target/nextflow/bd_rhapsody/bd_rhapsody_make_reference/main.nf +++ b/target/nextflow/bd_rhapsody/bd_rhapsody_make_reference/main.nf @@ -3146,9 +3146,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/bd_rhapsody/bd_rhapsody_make_reference", "viash_version" : "0.9.0", - "git_commit" : "dd75d6f397b5865acc31c39e7b613f8fb2989757", - "git_remote" : "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-26-gdd75d6f" + "git_commit" : "402ad6a813c0d0b141bbf8f9a3aab9c270a74812", + "git_remote" : "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-27-g402ad6a" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/bd_rhapsody/bd_rhapsody_sequence_analysis/.config.vsh.yaml b/target/nextflow/bd_rhapsody/bd_rhapsody_sequence_analysis/.config.vsh.yaml index 8251a122..7728b0fc 100644 --- a/target/nextflow/bd_rhapsody/bd_rhapsody_sequence_analysis/.config.vsh.yaml +++ b/target/nextflow/bd_rhapsody/bd_rhapsody_sequence_analysis/.config.vsh.yaml @@ -1115,9 +1115,9 @@ build_info: output: "target/nextflow/bd_rhapsody/bd_rhapsody_sequence_analysis" executable: "target/nextflow/bd_rhapsody/bd_rhapsody_sequence_analysis/main.nf" viash_version: "0.9.0" - git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757" - git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox" - git_tag: "v0.2.0-26-gdd75d6f" + git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812" + git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-27-g402ad6a" package_config: name: "biobox" version: "add_sgdemux" diff --git a/target/nextflow/bd_rhapsody/bd_rhapsody_sequence_analysis/main.nf b/target/nextflow/bd_rhapsody/bd_rhapsody_sequence_analysis/main.nf index 01730d26..495f4d94 100644 --- a/target/nextflow/bd_rhapsody/bd_rhapsody_sequence_analysis/main.nf +++ b/target/nextflow/bd_rhapsody/bd_rhapsody_sequence_analysis/main.nf @@ -4193,9 +4193,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/bd_rhapsody/bd_rhapsody_sequence_analysis", "viash_version" : "0.9.0", - "git_commit" : "dd75d6f397b5865acc31c39e7b613f8fb2989757", - "git_remote" : "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-26-gdd75d6f" + "git_commit" : "402ad6a813c0d0b141bbf8f9a3aab9c270a74812", + "git_remote" : "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-27-g402ad6a" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/bedtools/bedtools_bamtobed/.config.vsh.yaml b/target/nextflow/bedtools/bedtools_bamtobed/.config.vsh.yaml index 74b7ca37..acf77c2f 100644 --- a/target/nextflow/bedtools/bedtools_bamtobed/.config.vsh.yaml +++ b/target/nextflow/bedtools/bedtools_bamtobed/.config.vsh.yaml @@ -235,9 +235,9 @@ build_info: output: "target/nextflow/bedtools/bedtools_bamtobed" executable: "target/nextflow/bedtools/bedtools_bamtobed/main.nf" viash_version: "0.9.0" - git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757" - git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox" - git_tag: "v0.2.0-26-gdd75d6f" + git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812" + git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-27-g402ad6a" package_config: name: "biobox" version: "add_sgdemux" diff --git a/target/nextflow/bedtools/bedtools_bamtobed/main.nf b/target/nextflow/bedtools/bedtools_bamtobed/main.nf index e12fc9e1..9f8dd00f 100644 --- a/target/nextflow/bedtools/bedtools_bamtobed/main.nf +++ b/target/nextflow/bedtools/bedtools_bamtobed/main.nf @@ -3101,9 +3101,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/bedtools/bedtools_bamtobed", "viash_version" : "0.9.0", - "git_commit" : "dd75d6f397b5865acc31c39e7b613f8fb2989757", - "git_remote" : "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-26-gdd75d6f" + "git_commit" : "402ad6a813c0d0b141bbf8f9a3aab9c270a74812", + "git_remote" : "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-27-g402ad6a" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/bedtools/bedtools_bamtofastq/.config.vsh.yaml b/target/nextflow/bedtools/bedtools_bamtofastq/.config.vsh.yaml index d75e00fa..7a632bea 100644 --- a/target/nextflow/bedtools/bedtools_bamtofastq/.config.vsh.yaml +++ b/target/nextflow/bedtools/bedtools_bamtofastq/.config.vsh.yaml @@ -187,9 +187,9 @@ build_info: output: "target/nextflow/bedtools/bedtools_bamtofastq" executable: "target/nextflow/bedtools/bedtools_bamtofastq/main.nf" viash_version: "0.9.0" - git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757" - git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox" - git_tag: "v0.2.0-26-gdd75d6f" + git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812" + git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-27-g402ad6a" package_config: name: "biobox" version: "add_sgdemux" diff --git a/target/nextflow/bedtools/bedtools_bamtofastq/main.nf b/target/nextflow/bedtools/bedtools_bamtofastq/main.nf index 0c64142d..7f871a10 100644 --- a/target/nextflow/bedtools/bedtools_bamtofastq/main.nf +++ b/target/nextflow/bedtools/bedtools_bamtofastq/main.nf @@ -3050,9 +3050,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/bedtools/bedtools_bamtofastq", "viash_version" : "0.9.0", - "git_commit" : "dd75d6f397b5865acc31c39e7b613f8fb2989757", - "git_remote" : "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-26-gdd75d6f" + "git_commit" : "402ad6a813c0d0b141bbf8f9a3aab9c270a74812", + "git_remote" : "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-27-g402ad6a" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/bedtools/bedtools_bed12tobed6/.config.vsh.yaml b/target/nextflow/bedtools/bedtools_bed12tobed6/.config.vsh.yaml index a71df125..30765d6d 100644 --- a/target/nextflow/bedtools/bedtools_bed12tobed6/.config.vsh.yaml +++ b/target/nextflow/bedtools/bedtools_bed12tobed6/.config.vsh.yaml @@ -176,9 +176,9 @@ build_info: output: "target/nextflow/bedtools/bedtools_bed12tobed6" executable: "target/nextflow/bedtools/bedtools_bed12tobed6/main.nf" viash_version: "0.9.0" - git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757" - git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox" - git_tag: "v0.2.0-26-gdd75d6f" + git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812" + git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-27-g402ad6a" package_config: name: "biobox" version: "add_sgdemux" diff --git a/target/nextflow/bedtools/bedtools_bed12tobed6/main.nf b/target/nextflow/bedtools/bedtools_bed12tobed6/main.nf index f25e97cb..3c2389fd 100644 --- a/target/nextflow/bedtools/bedtools_bed12tobed6/main.nf +++ b/target/nextflow/bedtools/bedtools_bed12tobed6/main.nf @@ -3035,9 +3035,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/bedtools/bedtools_bed12tobed6", "viash_version" : "0.9.0", - "git_commit" : "dd75d6f397b5865acc31c39e7b613f8fb2989757", - "git_remote" : "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-26-gdd75d6f" + "git_commit" : "402ad6a813c0d0b141bbf8f9a3aab9c270a74812", + "git_remote" : "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-27-g402ad6a" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/bedtools/bedtools_bedtobam/.config.vsh.yaml b/target/nextflow/bedtools/bedtools_bedtobam/.config.vsh.yaml index 4239dfa9..6fae8168 100644 --- a/target/nextflow/bedtools/bedtools_bedtobam/.config.vsh.yaml +++ b/target/nextflow/bedtools/bedtools_bedtobam/.config.vsh.yaml @@ -214,9 +214,9 @@ build_info: output: "target/nextflow/bedtools/bedtools_bedtobam" executable: "target/nextflow/bedtools/bedtools_bedtobam/main.nf" viash_version: "0.9.0" - git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757" - git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox" - git_tag: "v0.2.0-26-gdd75d6f" + git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812" + git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-27-g402ad6a" package_config: name: "biobox" version: "add_sgdemux" diff --git a/target/nextflow/bedtools/bedtools_bedtobam/main.nf b/target/nextflow/bedtools/bedtools_bedtobam/main.nf index aa0d1ced..8cde7d89 100644 --- a/target/nextflow/bedtools/bedtools_bedtobam/main.nf +++ b/target/nextflow/bedtools/bedtools_bedtobam/main.nf @@ -3083,9 +3083,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/bedtools/bedtools_bedtobam", "viash_version" : "0.9.0", - "git_commit" : "dd75d6f397b5865acc31c39e7b613f8fb2989757", - "git_remote" : "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-26-gdd75d6f" + "git_commit" : "402ad6a813c0d0b141bbf8f9a3aab9c270a74812", + "git_remote" : "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-27-g402ad6a" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/bedtools/bedtools_genomecov/.config.vsh.yaml b/target/nextflow/bedtools/bedtools_genomecov/.config.vsh.yaml index b47b0057..42f7b607 100644 --- a/target/nextflow/bedtools/bedtools_genomecov/.config.vsh.yaml +++ b/target/nextflow/bedtools/bedtools_genomecov/.config.vsh.yaml @@ -337,9 +337,9 @@ build_info: output: "target/nextflow/bedtools/bedtools_genomecov" executable: "target/nextflow/bedtools/bedtools_genomecov/main.nf" viash_version: "0.9.0" - git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757" - git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox" - git_tag: "v0.2.0-26-gdd75d6f" + git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812" + git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-27-g402ad6a" package_config: name: "biobox" version: "add_sgdemux" diff --git a/target/nextflow/bedtools/bedtools_genomecov/main.nf b/target/nextflow/bedtools/bedtools_genomecov/main.nf index 30956524..779c8758 100644 --- a/target/nextflow/bedtools/bedtools_genomecov/main.nf +++ b/target/nextflow/bedtools/bedtools_genomecov/main.nf @@ -3207,9 +3207,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/bedtools/bedtools_genomecov", "viash_version" : "0.9.0", - "git_commit" : "dd75d6f397b5865acc31c39e7b613f8fb2989757", - "git_remote" : "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-26-gdd75d6f" + "git_commit" : "402ad6a813c0d0b141bbf8f9a3aab9c270a74812", + "git_remote" : "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-27-g402ad6a" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/bedtools/bedtools_getfasta/.config.vsh.yaml b/target/nextflow/bedtools/bedtools_getfasta/.config.vsh.yaml index 18567cad..9d343645 100644 --- a/target/nextflow/bedtools/bedtools_getfasta/.config.vsh.yaml +++ b/target/nextflow/bedtools/bedtools_getfasta/.config.vsh.yaml @@ -232,9 +232,9 @@ build_info: output: "target/nextflow/bedtools/bedtools_getfasta" executable: "target/nextflow/bedtools/bedtools_getfasta/main.nf" viash_version: "0.9.0" - git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757" - git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox" - git_tag: "v0.2.0-26-gdd75d6f" + git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812" + git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-27-g402ad6a" package_config: name: "biobox" version: "add_sgdemux" diff --git a/target/nextflow/bedtools/bedtools_getfasta/main.nf b/target/nextflow/bedtools/bedtools_getfasta/main.nf index e9b4b0b3..daca73f9 100644 --- a/target/nextflow/bedtools/bedtools_getfasta/main.nf +++ b/target/nextflow/bedtools/bedtools_getfasta/main.nf @@ -3086,9 +3086,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/bedtools/bedtools_getfasta", "viash_version" : "0.9.0", - "git_commit" : "dd75d6f397b5865acc31c39e7b613f8fb2989757", - "git_remote" : "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-26-gdd75d6f" + "git_commit" : "402ad6a813c0d0b141bbf8f9a3aab9c270a74812", + "git_remote" : "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-27-g402ad6a" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/bedtools/bedtools_groupby/.config.vsh.yaml b/target/nextflow/bedtools/bedtools_groupby/.config.vsh.yaml index 86d43c1b..4b72b9fb 100644 --- a/target/nextflow/bedtools/bedtools_groupby/.config.vsh.yaml +++ b/target/nextflow/bedtools/bedtools_groupby/.config.vsh.yaml @@ -273,9 +273,9 @@ build_info: output: "target/nextflow/bedtools/bedtools_groupby" executable: "target/nextflow/bedtools/bedtools_groupby/main.nf" viash_version: "0.9.0" - git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757" - git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox" - git_tag: "v0.2.0-26-gdd75d6f" + git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812" + git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-27-g402ad6a" package_config: name: "biobox" version: "add_sgdemux" diff --git a/target/nextflow/bedtools/bedtools_groupby/main.nf b/target/nextflow/bedtools/bedtools_groupby/main.nf index 1c9f1bd9..e408a9f1 100644 --- a/target/nextflow/bedtools/bedtools_groupby/main.nf +++ b/target/nextflow/bedtools/bedtools_groupby/main.nf @@ -3130,9 +3130,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/bedtools/bedtools_groupby", "viash_version" : "0.9.0", - "git_commit" : "dd75d6f397b5865acc31c39e7b613f8fb2989757", - "git_remote" : "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-26-gdd75d6f" + "git_commit" : "402ad6a813c0d0b141bbf8f9a3aab9c270a74812", + "git_remote" : "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-27-g402ad6a" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/bedtools/bedtools_intersect/.config.vsh.yaml b/target/nextflow/bedtools/bedtools_intersect/.config.vsh.yaml index 3f8f152f..eb306229 100644 --- a/target/nextflow/bedtools/bedtools_intersect/.config.vsh.yaml +++ b/target/nextflow/bedtools/bedtools_intersect/.config.vsh.yaml @@ -410,9 +410,9 @@ build_info: output: "target/nextflow/bedtools/bedtools_intersect" executable: "target/nextflow/bedtools/bedtools_intersect/main.nf" viash_version: "0.9.0" - git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757" - git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox" - git_tag: "v0.2.0-26-gdd75d6f" + git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812" + git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-27-g402ad6a" package_config: name: "biobox" version: "add_sgdemux" diff --git a/target/nextflow/bedtools/bedtools_intersect/main.nf b/target/nextflow/bedtools/bedtools_intersect/main.nf index 922bdb1c..5481d4e6 100644 --- a/target/nextflow/bedtools/bedtools_intersect/main.nf +++ b/target/nextflow/bedtools/bedtools_intersect/main.nf @@ -3282,9 +3282,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/bedtools/bedtools_intersect", "viash_version" : "0.9.0", - "git_commit" : "dd75d6f397b5865acc31c39e7b613f8fb2989757", - "git_remote" : "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-26-gdd75d6f" + "git_commit" : "402ad6a813c0d0b141bbf8f9a3aab9c270a74812", + "git_remote" : "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-27-g402ad6a" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/bedtools/bedtools_links/.config.vsh.yaml b/target/nextflow/bedtools/bedtools_links/.config.vsh.yaml index 110acb45..ef08b3fd 100644 --- a/target/nextflow/bedtools/bedtools_links/.config.vsh.yaml +++ b/target/nextflow/bedtools/bedtools_links/.config.vsh.yaml @@ -210,9 +210,9 @@ build_info: output: "target/nextflow/bedtools/bedtools_links" executable: "target/nextflow/bedtools/bedtools_links/main.nf" viash_version: "0.9.0" - git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757" - git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox" - git_tag: "v0.2.0-26-gdd75d6f" + git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812" + git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-27-g402ad6a" package_config: name: "biobox" version: "add_sgdemux" diff --git a/target/nextflow/bedtools/bedtools_links/main.nf b/target/nextflow/bedtools/bedtools_links/main.nf index 9282f1a8..d672f2c5 100644 --- a/target/nextflow/bedtools/bedtools_links/main.nf +++ b/target/nextflow/bedtools/bedtools_links/main.nf @@ -3073,9 +3073,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/bedtools/bedtools_links", "viash_version" : "0.9.0", - "git_commit" : "dd75d6f397b5865acc31c39e7b613f8fb2989757", - "git_remote" : "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-26-gdd75d6f" + "git_commit" : "402ad6a813c0d0b141bbf8f9a3aab9c270a74812", + "git_remote" : "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-27-g402ad6a" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/bedtools/bedtools_merge/.config.vsh.yaml b/target/nextflow/bedtools/bedtools_merge/.config.vsh.yaml index a098c41e..0aaa8625 100644 --- a/target/nextflow/bedtools/bedtools_merge/.config.vsh.yaml +++ b/target/nextflow/bedtools/bedtools_merge/.config.vsh.yaml @@ -279,9 +279,9 @@ build_info: output: "target/nextflow/bedtools/bedtools_merge" executable: "target/nextflow/bedtools/bedtools_merge/main.nf" viash_version: "0.9.0" - git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757" - git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox" - git_tag: "v0.2.0-26-gdd75d6f" + git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812" + git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-27-g402ad6a" package_config: name: "biobox" version: "add_sgdemux" diff --git a/target/nextflow/bedtools/bedtools_merge/main.nf b/target/nextflow/bedtools/bedtools_merge/main.nf index 36f81c0d..f2dc20ac 100644 --- a/target/nextflow/bedtools/bedtools_merge/main.nf +++ b/target/nextflow/bedtools/bedtools_merge/main.nf @@ -3134,9 +3134,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/bedtools/bedtools_merge", "viash_version" : "0.9.0", - "git_commit" : "dd75d6f397b5865acc31c39e7b613f8fb2989757", - "git_remote" : "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-26-gdd75d6f" + "git_commit" : "402ad6a813c0d0b141bbf8f9a3aab9c270a74812", + "git_remote" : "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-27-g402ad6a" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/bedtools/bedtools_sort/.config.vsh.yaml b/target/nextflow/bedtools/bedtools_sort/.config.vsh.yaml index 55e01627..28065cfa 100644 --- a/target/nextflow/bedtools/bedtools_sort/.config.vsh.yaml +++ b/target/nextflow/bedtools/bedtools_sort/.config.vsh.yaml @@ -222,9 +222,9 @@ build_info: output: "target/nextflow/bedtools/bedtools_sort" executable: "target/nextflow/bedtools/bedtools_sort/main.nf" viash_version: "0.9.0" - git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757" - git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox" - git_tag: "v0.2.0-26-gdd75d6f" + git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812" + git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-27-g402ad6a" package_config: name: "biobox" version: "add_sgdemux" diff --git a/target/nextflow/bedtools/bedtools_sort/main.nf b/target/nextflow/bedtools/bedtools_sort/main.nf index 56d7d322..e360bec6 100644 --- a/target/nextflow/bedtools/bedtools_sort/main.nf +++ b/target/nextflow/bedtools/bedtools_sort/main.nf @@ -3092,9 +3092,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/bedtools/bedtools_sort", "viash_version" : "0.9.0", - "git_commit" : "dd75d6f397b5865acc31c39e7b613f8fb2989757", - "git_remote" : "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-26-gdd75d6f" + "git_commit" : "402ad6a813c0d0b141bbf8f9a3aab9c270a74812", + "git_remote" : "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-27-g402ad6a" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/busco/busco_download_datasets/.config.vsh.yaml b/target/nextflow/busco/busco_download_datasets/.config.vsh.yaml index c7d8b3b8..5f0509be 100644 --- a/target/nextflow/busco/busco_download_datasets/.config.vsh.yaml +++ b/target/nextflow/busco/busco_download_datasets/.config.vsh.yaml @@ -158,9 +158,9 @@ build_info: output: "target/nextflow/busco/busco_download_datasets" executable: "target/nextflow/busco/busco_download_datasets/main.nf" viash_version: "0.9.0" - git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757" - git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox" - git_tag: "v0.2.0-26-gdd75d6f" + git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812" + git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-27-g402ad6a" package_config: name: "biobox" version: "add_sgdemux" diff --git a/target/nextflow/busco/busco_download_datasets/main.nf b/target/nextflow/busco/busco_download_datasets/main.nf index 75354bee..0f9ed858 100644 --- a/target/nextflow/busco/busco_download_datasets/main.nf +++ b/target/nextflow/busco/busco_download_datasets/main.nf @@ -3011,9 +3011,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/busco/busco_download_datasets", "viash_version" : "0.9.0", - "git_commit" : "dd75d6f397b5865acc31c39e7b613f8fb2989757", - "git_remote" : "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-26-gdd75d6f" + "git_commit" : "402ad6a813c0d0b141bbf8f9a3aab9c270a74812", + "git_remote" : "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-27-g402ad6a" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/busco/busco_list_datasets/.config.vsh.yaml b/target/nextflow/busco/busco_list_datasets/.config.vsh.yaml index bf505552..886996b7 100644 --- a/target/nextflow/busco/busco_list_datasets/.config.vsh.yaml +++ b/target/nextflow/busco/busco_list_datasets/.config.vsh.yaml @@ -145,9 +145,9 @@ build_info: output: "target/nextflow/busco/busco_list_datasets" executable: "target/nextflow/busco/busco_list_datasets/main.nf" viash_version: "0.9.0" - git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757" - git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox" - git_tag: "v0.2.0-26-gdd75d6f" + git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812" + git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-27-g402ad6a" package_config: name: "biobox" version: "add_sgdemux" diff --git a/target/nextflow/busco/busco_list_datasets/main.nf b/target/nextflow/busco/busco_list_datasets/main.nf index b1af879f..37fc11e1 100644 --- a/target/nextflow/busco/busco_list_datasets/main.nf +++ b/target/nextflow/busco/busco_list_datasets/main.nf @@ -2997,9 +2997,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/busco/busco_list_datasets", "viash_version" : "0.9.0", - "git_commit" : "dd75d6f397b5865acc31c39e7b613f8fb2989757", - "git_remote" : "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-26-gdd75d6f" + "git_commit" : "402ad6a813c0d0b141bbf8f9a3aab9c270a74812", + "git_remote" : "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-27-g402ad6a" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/busco/busco_run/.config.vsh.yaml b/target/nextflow/busco/busco_run/.config.vsh.yaml index 2920f269..52474137 100644 --- a/target/nextflow/busco/busco_run/.config.vsh.yaml +++ b/target/nextflow/busco/busco_run/.config.vsh.yaml @@ -423,9 +423,9 @@ build_info: output: "target/nextflow/busco/busco_run" executable: "target/nextflow/busco/busco_run/main.nf" viash_version: "0.9.0" - git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757" - git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox" - git_tag: "v0.2.0-26-gdd75d6f" + git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812" + git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-27-g402ad6a" package_config: name: "biobox" version: "add_sgdemux" diff --git a/target/nextflow/busco/busco_run/main.nf b/target/nextflow/busco/busco_run/main.nf index 2d4466e2..c90c0648 100644 --- a/target/nextflow/busco/busco_run/main.nf +++ b/target/nextflow/busco/busco_run/main.nf @@ -3309,9 +3309,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/busco/busco_run", "viash_version" : "0.9.0", - "git_commit" : "dd75d6f397b5865acc31c39e7b613f8fb2989757", - "git_remote" : "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-26-gdd75d6f" + "git_commit" : "402ad6a813c0d0b141bbf8f9a3aab9c270a74812", + "git_remote" : "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-27-g402ad6a" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/cellranger/cellranger_mkref/.config.vsh.yaml b/target/nextflow/cellranger/cellranger_mkref/.config.vsh.yaml index 22ec68cf..d8aba3ec 100644 --- a/target/nextflow/cellranger/cellranger_mkref/.config.vsh.yaml +++ b/target/nextflow/cellranger/cellranger_mkref/.config.vsh.yaml @@ -195,9 +195,9 @@ build_info: output: "target/nextflow/cellranger/cellranger_mkref" executable: "target/nextflow/cellranger/cellranger_mkref/main.nf" viash_version: "0.9.0" - git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757" - git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox" - git_tag: "v0.2.0-26-gdd75d6f" + git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812" + git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-27-g402ad6a" package_config: name: "biobox" version: "add_sgdemux" diff --git a/target/nextflow/cellranger/cellranger_mkref/main.nf b/target/nextflow/cellranger/cellranger_mkref/main.nf index 48909ab4..e421adab 100644 --- a/target/nextflow/cellranger/cellranger_mkref/main.nf +++ b/target/nextflow/cellranger/cellranger_mkref/main.nf @@ -3059,9 +3059,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/cellranger/cellranger_mkref", "viash_version" : "0.9.0", - "git_commit" : "dd75d6f397b5865acc31c39e7b613f8fb2989757", - "git_remote" : "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-26-gdd75d6f" + "git_commit" : "402ad6a813c0d0b141bbf8f9a3aab9c270a74812", + "git_remote" : "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-27-g402ad6a" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/cutadapt/.config.vsh.yaml b/target/nextflow/cutadapt/.config.vsh.yaml index db1d262c..5ba0b1f7 100644 --- a/target/nextflow/cutadapt/.config.vsh.yaml +++ b/target/nextflow/cutadapt/.config.vsh.yaml @@ -740,9 +740,9 @@ build_info: output: "target/nextflow/cutadapt" executable: "target/nextflow/cutadapt/main.nf" viash_version: "0.9.0" - git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757" - git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox" - git_tag: "v0.2.0-26-gdd75d6f" + git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812" + git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-27-g402ad6a" package_config: name: "biobox" version: "add_sgdemux" diff --git a/target/nextflow/cutadapt/main.nf b/target/nextflow/cutadapt/main.nf index 44074e7b..741668e6 100644 --- a/target/nextflow/cutadapt/main.nf +++ b/target/nextflow/cutadapt/main.nf @@ -3619,9 +3619,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/cutadapt", "viash_version" : "0.9.0", - "git_commit" : "dd75d6f397b5865acc31c39e7b613f8fb2989757", - "git_remote" : "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-26-gdd75d6f" + "git_commit" : "402ad6a813c0d0b141bbf8f9a3aab9c270a74812", + "git_remote" : "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-27-g402ad6a" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/falco/.config.vsh.yaml b/target/nextflow/falco/.config.vsh.yaml index 9b3997e9..bc9dc264 100644 --- a/target/nextflow/falco/.config.vsh.yaml +++ b/target/nextflow/falco/.config.vsh.yaml @@ -317,9 +317,9 @@ build_info: output: "target/nextflow/falco" executable: "target/nextflow/falco/main.nf" viash_version: "0.9.0" - git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757" - git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox" - git_tag: "v0.2.0-26-gdd75d6f" + git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812" + git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-27-g402ad6a" package_config: name: "biobox" version: "add_sgdemux" diff --git a/target/nextflow/falco/main.nf b/target/nextflow/falco/main.nf index 0046f7e1..23a0c1e6 100644 --- a/target/nextflow/falco/main.nf +++ b/target/nextflow/falco/main.nf @@ -3170,9 +3170,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/falco", "viash_version" : "0.9.0", - "git_commit" : "dd75d6f397b5865acc31c39e7b613f8fb2989757", - "git_remote" : "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-26-gdd75d6f" + "git_commit" : "402ad6a813c0d0b141bbf8f9a3aab9c270a74812", + "git_remote" : "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-27-g402ad6a" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/fastp/.config.vsh.yaml b/target/nextflow/fastp/.config.vsh.yaml index b39f726f..84ea94c9 100644 --- a/target/nextflow/fastp/.config.vsh.yaml +++ b/target/nextflow/fastp/.config.vsh.yaml @@ -1083,9 +1083,9 @@ build_info: output: "target/nextflow/fastp" executable: "target/nextflow/fastp/main.nf" viash_version: "0.9.0" - git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757" - git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox" - git_tag: "v0.2.0-26-gdd75d6f" + git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812" + git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-27-g402ad6a" package_config: name: "biobox" version: "add_sgdemux" diff --git a/target/nextflow/fastp/main.nf b/target/nextflow/fastp/main.nf index 990a1402..42c972b7 100644 --- a/target/nextflow/fastp/main.nf +++ b/target/nextflow/fastp/main.nf @@ -4023,9 +4023,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/fastp", "viash_version" : "0.9.0", - "git_commit" : "dd75d6f397b5865acc31c39e7b613f8fb2989757", - "git_remote" : "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-26-gdd75d6f" + "git_commit" : "402ad6a813c0d0b141bbf8f9a3aab9c270a74812", + "git_remote" : "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-27-g402ad6a" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/fastqc/.config.vsh.yaml b/target/nextflow/fastqc/.config.vsh.yaml index 7d379791..624e922b 100644 --- a/target/nextflow/fastqc/.config.vsh.yaml +++ b/target/nextflow/fastqc/.config.vsh.yaml @@ -340,9 +340,9 @@ build_info: output: "target/nextflow/fastqc" executable: "target/nextflow/fastqc/main.nf" viash_version: "0.9.0" - git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757" - git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox" - git_tag: "v0.2.0-26-gdd75d6f" + git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812" + git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-27-g402ad6a" package_config: name: "biobox" version: "add_sgdemux" diff --git a/target/nextflow/fastqc/main.nf b/target/nextflow/fastqc/main.nf index 828a9c66..f51dc4f1 100644 --- a/target/nextflow/fastqc/main.nf +++ b/target/nextflow/fastqc/main.nf @@ -3182,9 +3182,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/fastqc", "viash_version" : "0.9.0", - "git_commit" : "dd75d6f397b5865acc31c39e7b613f8fb2989757", - "git_remote" : "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-26-gdd75d6f" + "git_commit" : "402ad6a813c0d0b141bbf8f9a3aab9c270a74812", + "git_remote" : "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-27-g402ad6a" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/featurecounts/.config.vsh.yaml b/target/nextflow/featurecounts/.config.vsh.yaml index 9bb2bb21..65f0d91f 100644 --- a/target/nextflow/featurecounts/.config.vsh.yaml +++ b/target/nextflow/featurecounts/.config.vsh.yaml @@ -645,9 +645,9 @@ build_info: output: "target/nextflow/featurecounts" executable: "target/nextflow/featurecounts/main.nf" viash_version: "0.9.0" - git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757" - git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox" - git_tag: "v0.2.0-26-gdd75d6f" + git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812" + git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-27-g402ad6a" package_config: name: "biobox" version: "add_sgdemux" diff --git a/target/nextflow/featurecounts/main.nf b/target/nextflow/featurecounts/main.nf index be7f5ca0..c9cc7f25 100644 --- a/target/nextflow/featurecounts/main.nf +++ b/target/nextflow/featurecounts/main.nf @@ -3549,9 +3549,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/featurecounts", "viash_version" : "0.9.0", - "git_commit" : "dd75d6f397b5865acc31c39e7b613f8fb2989757", - "git_remote" : "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-26-gdd75d6f" + "git_commit" : "402ad6a813c0d0b141bbf8f9a3aab9c270a74812", + "git_remote" : "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-27-g402ad6a" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/fq_subsample/.config.vsh.yaml b/target/nextflow/fq_subsample/.config.vsh.yaml index 3b0a63dd..2fd3d965 100644 --- a/target/nextflow/fq_subsample/.config.vsh.yaml +++ b/target/nextflow/fq_subsample/.config.vsh.yaml @@ -190,9 +190,9 @@ build_info: output: "target/nextflow/fq_subsample" executable: "target/nextflow/fq_subsample/main.nf" viash_version: "0.9.0" - git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757" - git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox" - git_tag: "v0.2.0-26-gdd75d6f" + git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812" + git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-27-g402ad6a" package_config: name: "biobox" version: "add_sgdemux" diff --git a/target/nextflow/fq_subsample/main.nf b/target/nextflow/fq_subsample/main.nf index 596eb20b..99017d72 100644 --- a/target/nextflow/fq_subsample/main.nf +++ b/target/nextflow/fq_subsample/main.nf @@ -3032,9 +3032,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/fq_subsample", "viash_version" : "0.9.0", - "git_commit" : "dd75d6f397b5865acc31c39e7b613f8fb2989757", - "git_remote" : "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-26-gdd75d6f" + "git_commit" : "402ad6a813c0d0b141bbf8f9a3aab9c270a74812", + "git_remote" : "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-27-g402ad6a" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/gffread/.config.vsh.yaml b/target/nextflow/gffread/.config.vsh.yaml index 3aa6b7c1..323c38de 100644 --- a/target/nextflow/gffread/.config.vsh.yaml +++ b/target/nextflow/gffread/.config.vsh.yaml @@ -685,9 +685,9 @@ build_info: output: "target/nextflow/gffread" executable: "target/nextflow/gffread/main.nf" viash_version: "0.9.0" - git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757" - git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox" - git_tag: "v0.2.0-26-gdd75d6f" + git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812" + git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-27-g402ad6a" package_config: name: "biobox" version: "add_sgdemux" diff --git a/target/nextflow/gffread/main.nf b/target/nextflow/gffread/main.nf index e60c5dfd..dd2392da 100644 --- a/target/nextflow/gffread/main.nf +++ b/target/nextflow/gffread/main.nf @@ -3606,9 +3606,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/gffread", "viash_version" : "0.9.0", - "git_commit" : "dd75d6f397b5865acc31c39e7b613f8fb2989757", - "git_remote" : "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-26-gdd75d6f" + "git_commit" : "402ad6a813c0d0b141bbf8f9a3aab9c270a74812", + "git_remote" : "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-27-g402ad6a" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/kallisto/kallisto_index/.config.vsh.yaml b/target/nextflow/kallisto/kallisto_index/.config.vsh.yaml index 3a4adfb8..8a6b8856 100644 --- a/target/nextflow/kallisto/kallisto_index/.config.vsh.yaml +++ b/target/nextflow/kallisto/kallisto_index/.config.vsh.yaml @@ -218,9 +218,9 @@ build_info: output: "target/nextflow/kallisto/kallisto_index" executable: "target/nextflow/kallisto/kallisto_index/main.nf" viash_version: "0.9.0" - git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757" - git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox" - git_tag: "v0.2.0-26-gdd75d6f" + git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812" + git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-27-g402ad6a" package_config: name: "biobox" version: "add_sgdemux" diff --git a/target/nextflow/kallisto/kallisto_index/main.nf b/target/nextflow/kallisto/kallisto_index/main.nf index 9a840c8e..34b93ceb 100644 --- a/target/nextflow/kallisto/kallisto_index/main.nf +++ b/target/nextflow/kallisto/kallisto_index/main.nf @@ -3071,9 +3071,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/kallisto/kallisto_index", "viash_version" : "0.9.0", - "git_commit" : "dd75d6f397b5865acc31c39e7b613f8fb2989757", - "git_remote" : "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-26-gdd75d6f" + "git_commit" : "402ad6a813c0d0b141bbf8f9a3aab9c270a74812", + "git_remote" : "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-27-g402ad6a" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/kallisto/kallisto_quant/.config.vsh.yaml b/target/nextflow/kallisto/kallisto_quant/.config.vsh.yaml index a1943cf0..b731ab2e 100644 --- a/target/nextflow/kallisto/kallisto_quant/.config.vsh.yaml +++ b/target/nextflow/kallisto/kallisto_quant/.config.vsh.yaml @@ -246,9 +246,9 @@ build_info: output: "target/nextflow/kallisto/kallisto_quant" executable: "target/nextflow/kallisto/kallisto_quant/main.nf" viash_version: "0.9.0" - git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757" - git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox" - git_tag: "v0.2.0-26-gdd75d6f" + git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812" + git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-27-g402ad6a" package_config: name: "biobox" version: "add_sgdemux" diff --git a/target/nextflow/kallisto/kallisto_quant/main.nf b/target/nextflow/kallisto/kallisto_quant/main.nf index b1023881..141883bb 100644 --- a/target/nextflow/kallisto/kallisto_quant/main.nf +++ b/target/nextflow/kallisto/kallisto_quant/main.nf @@ -3105,9 +3105,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/kallisto/kallisto_quant", "viash_version" : "0.9.0", - "git_commit" : "dd75d6f397b5865acc31c39e7b613f8fb2989757", - "git_remote" : "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-26-gdd75d6f" + "git_commit" : "402ad6a813c0d0b141bbf8f9a3aab9c270a74812", + "git_remote" : "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-27-g402ad6a" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/lofreq/lofreq_call/.config.vsh.yaml b/target/nextflow/lofreq/lofreq_call/.config.vsh.yaml index 77a44de9..e45b24f6 100644 --- a/target/nextflow/lofreq/lofreq_call/.config.vsh.yaml +++ b/target/nextflow/lofreq/lofreq_call/.config.vsh.yaml @@ -507,9 +507,9 @@ build_info: output: "target/nextflow/lofreq/lofreq_call" executable: "target/nextflow/lofreq/lofreq_call/main.nf" viash_version: "0.9.0" - git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757" - git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox" - git_tag: "v0.2.0-26-gdd75d6f" + git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812" + git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-27-g402ad6a" package_config: name: "biobox" version: "add_sgdemux" diff --git a/target/nextflow/lofreq/lofreq_call/main.nf b/target/nextflow/lofreq/lofreq_call/main.nf index 766b372a..747d521a 100644 --- a/target/nextflow/lofreq/lofreq_call/main.nf +++ b/target/nextflow/lofreq/lofreq_call/main.nf @@ -3414,9 +3414,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/lofreq/lofreq_call", "viash_version" : "0.9.0", - "git_commit" : "dd75d6f397b5865acc31c39e7b613f8fb2989757", - "git_remote" : "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-26-gdd75d6f" + "git_commit" : "402ad6a813c0d0b141bbf8f9a3aab9c270a74812", + "git_remote" : "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-27-g402ad6a" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/lofreq/lofreq_indelqual/.config.vsh.yaml b/target/nextflow/lofreq/lofreq_indelqual/.config.vsh.yaml index 08395d1e..e74b50d6 100644 --- a/target/nextflow/lofreq/lofreq_indelqual/.config.vsh.yaml +++ b/target/nextflow/lofreq/lofreq_indelqual/.config.vsh.yaml @@ -215,9 +215,9 @@ build_info: output: "target/nextflow/lofreq/lofreq_indelqual" executable: "target/nextflow/lofreq/lofreq_indelqual/main.nf" viash_version: "0.9.0" - git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757" - git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox" - git_tag: "v0.2.0-26-gdd75d6f" + git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812" + git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-27-g402ad6a" package_config: name: "biobox" version: "add_sgdemux" diff --git a/target/nextflow/lofreq/lofreq_indelqual/main.nf b/target/nextflow/lofreq/lofreq_indelqual/main.nf index b4a72018..94d33729 100644 --- a/target/nextflow/lofreq/lofreq_indelqual/main.nf +++ b/target/nextflow/lofreq/lofreq_indelqual/main.nf @@ -3077,9 +3077,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/lofreq/lofreq_indelqual", "viash_version" : "0.9.0", - "git_commit" : "dd75d6f397b5865acc31c39e7b613f8fb2989757", - "git_remote" : "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-26-gdd75d6f" + "git_commit" : "402ad6a813c0d0b141bbf8f9a3aab9c270a74812", + "git_remote" : "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-27-g402ad6a" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/multiqc/.config.vsh.yaml b/target/nextflow/multiqc/.config.vsh.yaml index 7fe60669..a9eec247 100644 --- a/target/nextflow/multiqc/.config.vsh.yaml +++ b/target/nextflow/multiqc/.config.vsh.yaml @@ -456,9 +456,9 @@ build_info: output: "target/nextflow/multiqc" executable: "target/nextflow/multiqc/main.nf" viash_version: "0.9.0" - git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757" - git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox" - git_tag: "v0.2.0-26-gdd75d6f" + git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812" + git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-27-g402ad6a" package_config: name: "biobox" version: "add_sgdemux" diff --git a/target/nextflow/multiqc/main.nf b/target/nextflow/multiqc/main.nf index 627fbb89..a8ed0584 100644 --- a/target/nextflow/multiqc/main.nf +++ b/target/nextflow/multiqc/main.nf @@ -3366,9 +3366,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/multiqc", "viash_version" : "0.9.0", - "git_commit" : "dd75d6f397b5865acc31c39e7b613f8fb2989757", - "git_remote" : "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-26-gdd75d6f" + "git_commit" : "402ad6a813c0d0b141bbf8f9a3aab9c270a74812", + "git_remote" : "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-27-g402ad6a" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/nanoplot/.config.vsh.yaml b/target/nextflow/nanoplot/.config.vsh.yaml index 08696642..528eacd5 100644 --- a/target/nextflow/nanoplot/.config.vsh.yaml +++ b/target/nextflow/nanoplot/.config.vsh.yaml @@ -492,9 +492,9 @@ build_info: output: "target/nextflow/nanoplot" executable: "target/nextflow/nanoplot/main.nf" viash_version: "0.9.0" - git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757" - git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox" - git_tag: "v0.2.0-26-gdd75d6f" + git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812" + git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-27-g402ad6a" package_config: name: "biobox" version: "add_sgdemux" diff --git a/target/nextflow/nanoplot/main.nf b/target/nextflow/nanoplot/main.nf index 797b31b3..579e36d8 100644 --- a/target/nextflow/nanoplot/main.nf +++ b/target/nextflow/nanoplot/main.nf @@ -3397,9 +3397,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/nanoplot", "viash_version" : "0.9.0", - "git_commit" : "dd75d6f397b5865acc31c39e7b613f8fb2989757", - "git_remote" : "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-26-gdd75d6f" + "git_commit" : "402ad6a813c0d0b141bbf8f9a3aab9c270a74812", + "git_remote" : "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-27-g402ad6a" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/pear/.config.vsh.yaml b/target/nextflow/pear/.config.vsh.yaml index 0d9e2c2c..a1adf696 100644 --- a/target/nextflow/pear/.config.vsh.yaml +++ b/target/nextflow/pear/.config.vsh.yaml @@ -398,9 +398,9 @@ build_info: output: "target/nextflow/pear" executable: "target/nextflow/pear/main.nf" viash_version: "0.9.0" - git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757" - git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox" - git_tag: "v0.2.0-26-gdd75d6f" + git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812" + git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-27-g402ad6a" package_config: name: "biobox" version: "add_sgdemux" diff --git a/target/nextflow/pear/main.nf b/target/nextflow/pear/main.nf index 9f66fc7a..bde59978 100644 --- a/target/nextflow/pear/main.nf +++ b/target/nextflow/pear/main.nf @@ -3259,9 +3259,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/pear", "viash_version" : "0.9.0", - "git_commit" : "dd75d6f397b5865acc31c39e7b613f8fb2989757", - "git_remote" : "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-26-gdd75d6f" + "git_commit" : "402ad6a813c0d0b141bbf8f9a3aab9c270a74812", + "git_remote" : "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-27-g402ad6a" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/qualimap/qualimap_rnaseq/.config.vsh.yaml b/target/nextflow/qualimap/qualimap_rnaseq/.config.vsh.yaml index 059de3be..e2b6173d 100644 --- a/target/nextflow/qualimap/qualimap_rnaseq/.config.vsh.yaml +++ b/target/nextflow/qualimap/qualimap_rnaseq/.config.vsh.yaml @@ -264,9 +264,9 @@ build_info: output: "target/nextflow/qualimap/qualimap_rnaseq" executable: "target/nextflow/qualimap/qualimap_rnaseq/main.nf" viash_version: "0.9.0" - git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757" - git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox" - git_tag: "v0.2.0-26-gdd75d6f" + git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812" + git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-27-g402ad6a" package_config: name: "biobox" version: "add_sgdemux" diff --git a/target/nextflow/qualimap/qualimap_rnaseq/main.nf b/target/nextflow/qualimap/qualimap_rnaseq/main.nf index 61011899..22b88233 100644 --- a/target/nextflow/qualimap/qualimap_rnaseq/main.nf +++ b/target/nextflow/qualimap/qualimap_rnaseq/main.nf @@ -3129,9 +3129,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/qualimap/qualimap_rnaseq", "viash_version" : "0.9.0", - "git_commit" : "dd75d6f397b5865acc31c39e7b613f8fb2989757", - "git_remote" : "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-26-gdd75d6f" + "git_commit" : "402ad6a813c0d0b141bbf8f9a3aab9c270a74812", + "git_remote" : "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-27-g402ad6a" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/rsem/rsem_calculate_expression/.config.vsh.yaml b/target/nextflow/rsem/rsem_calculate_expression/.config.vsh.yaml index f56820e0..7368ea90 100644 --- a/target/nextflow/rsem/rsem_calculate_expression/.config.vsh.yaml +++ b/target/nextflow/rsem/rsem_calculate_expression/.config.vsh.yaml @@ -852,9 +852,9 @@ build_info: output: "target/nextflow/rsem/rsem_calculate_expression" executable: "target/nextflow/rsem/rsem_calculate_expression/main.nf" viash_version: "0.9.0" - git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757" - git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox" - git_tag: "v0.2.0-26-gdd75d6f" + git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812" + git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-27-g402ad6a" package_config: name: "biobox" version: "add_sgdemux" diff --git a/target/nextflow/rsem/rsem_calculate_expression/main.nf b/target/nextflow/rsem/rsem_calculate_expression/main.nf index 00728565..b34a4ee7 100644 --- a/target/nextflow/rsem/rsem_calculate_expression/main.nf +++ b/target/nextflow/rsem/rsem_calculate_expression/main.nf @@ -3661,9 +3661,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/rsem/rsem_calculate_expression", "viash_version" : "0.9.0", - "git_commit" : "dd75d6f397b5865acc31c39e7b613f8fb2989757", - "git_remote" : "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-26-gdd75d6f" + "git_commit" : "402ad6a813c0d0b141bbf8f9a3aab9c270a74812", + "git_remote" : "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-27-g402ad6a" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/rsem/rsem_prepare_reference/.config.vsh.yaml b/target/nextflow/rsem/rsem_prepare_reference/.config.vsh.yaml index 809d40f3..d7cf7a20 100644 --- a/target/nextflow/rsem/rsem_prepare_reference/.config.vsh.yaml +++ b/target/nextflow/rsem/rsem_prepare_reference/.config.vsh.yaml @@ -416,9 +416,9 @@ build_info: output: "target/nextflow/rsem/rsem_prepare_reference" executable: "target/nextflow/rsem/rsem_prepare_reference/main.nf" viash_version: "0.9.0" - git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757" - git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox" - git_tag: "v0.2.0-26-gdd75d6f" + git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812" + git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-27-g402ad6a" package_config: name: "biobox" version: "add_sgdemux" diff --git a/target/nextflow/rsem/rsem_prepare_reference/main.nf b/target/nextflow/rsem/rsem_prepare_reference/main.nf index 51ab1caa..c06ea56d 100644 --- a/target/nextflow/rsem/rsem_prepare_reference/main.nf +++ b/target/nextflow/rsem/rsem_prepare_reference/main.nf @@ -3245,9 +3245,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/rsem/rsem_prepare_reference", "viash_version" : "0.9.0", - "git_commit" : "dd75d6f397b5865acc31c39e7b613f8fb2989757", - "git_remote" : "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-26-gdd75d6f" + "git_commit" : "402ad6a813c0d0b141bbf8f9a3aab9c270a74812", + "git_remote" : "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-27-g402ad6a" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/rseqc/rseqc_bamstat/.config.vsh.yaml b/target/nextflow/rseqc/rseqc_bamstat/.config.vsh.yaml index 114c3a72..71c38412 100644 --- a/target/nextflow/rseqc/rseqc_bamstat/.config.vsh.yaml +++ b/target/nextflow/rseqc/rseqc_bamstat/.config.vsh.yaml @@ -175,9 +175,9 @@ build_info: output: "target/nextflow/rseqc/rseqc_bamstat" executable: "target/nextflow/rseqc/rseqc_bamstat/main.nf" viash_version: "0.9.0" - git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757" - git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox" - git_tag: "v0.2.0-26-gdd75d6f" + git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812" + git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-27-g402ad6a" package_config: name: "biobox" version: "add_sgdemux" diff --git a/target/nextflow/rseqc/rseqc_bamstat/main.nf b/target/nextflow/rseqc/rseqc_bamstat/main.nf index 1518fb39..c8b8cf1e 100644 --- a/target/nextflow/rseqc/rseqc_bamstat/main.nf +++ b/target/nextflow/rseqc/rseqc_bamstat/main.nf @@ -3036,9 +3036,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/rseqc/rseqc_bamstat", "viash_version" : "0.9.0", - "git_commit" : "dd75d6f397b5865acc31c39e7b613f8fb2989757", - "git_remote" : "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-26-gdd75d6f" + "git_commit" : "402ad6a813c0d0b141bbf8f9a3aab9c270a74812", + "git_remote" : "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-27-g402ad6a" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/rseqc/rseqc_inferexperiment/.config.vsh.yaml b/target/nextflow/rseqc/rseqc_inferexperiment/.config.vsh.yaml index 8f4ba4b8..849a2881 100644 --- a/target/nextflow/rseqc/rseqc_inferexperiment/.config.vsh.yaml +++ b/target/nextflow/rseqc/rseqc_inferexperiment/.config.vsh.yaml @@ -201,9 +201,9 @@ build_info: output: "target/nextflow/rseqc/rseqc_inferexperiment" executable: "target/nextflow/rseqc/rseqc_inferexperiment/main.nf" viash_version: "0.9.0" - git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757" - git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox" - git_tag: "v0.2.0-26-gdd75d6f" + git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812" + git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-27-g402ad6a" package_config: name: "biobox" version: "add_sgdemux" diff --git a/target/nextflow/rseqc/rseqc_inferexperiment/main.nf b/target/nextflow/rseqc/rseqc_inferexperiment/main.nf index 267b709b..5f492df7 100644 --- a/target/nextflow/rseqc/rseqc_inferexperiment/main.nf +++ b/target/nextflow/rseqc/rseqc_inferexperiment/main.nf @@ -3069,9 +3069,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/rseqc/rseqc_inferexperiment", "viash_version" : "0.9.0", - "git_commit" : "dd75d6f397b5865acc31c39e7b613f8fb2989757", - "git_remote" : "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-26-gdd75d6f" + "git_commit" : "402ad6a813c0d0b141bbf8f9a3aab9c270a74812", + "git_remote" : "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-27-g402ad6a" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/rseqc/rseqc_inner_distance/.config.vsh.yaml b/target/nextflow/rseqc/rseqc_inner_distance/.config.vsh.yaml index 20598383..6a1c77a9 100644 --- a/target/nextflow/rseqc/rseqc_inner_distance/.config.vsh.yaml +++ b/target/nextflow/rseqc/rseqc_inner_distance/.config.vsh.yaml @@ -294,9 +294,9 @@ build_info: output: "target/nextflow/rseqc/rseqc_inner_distance" executable: "target/nextflow/rseqc/rseqc_inner_distance/main.nf" viash_version: "0.9.0" - git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757" - git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox" - git_tag: "v0.2.0-26-gdd75d6f" + git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812" + git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-27-g402ad6a" package_config: name: "biobox" version: "add_sgdemux" diff --git a/target/nextflow/rseqc/rseqc_inner_distance/main.nf b/target/nextflow/rseqc/rseqc_inner_distance/main.nf index a6f56d07..7d31d43c 100644 --- a/target/nextflow/rseqc/rseqc_inner_distance/main.nf +++ b/target/nextflow/rseqc/rseqc_inner_distance/main.nf @@ -3169,9 +3169,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/rseqc/rseqc_inner_distance", "viash_version" : "0.9.0", - "git_commit" : "dd75d6f397b5865acc31c39e7b613f8fb2989757", - "git_remote" : "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-26-gdd75d6f" + "git_commit" : "402ad6a813c0d0b141bbf8f9a3aab9c270a74812", + "git_remote" : "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-27-g402ad6a" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/salmon/salmon_index/.config.vsh.yaml b/target/nextflow/salmon/salmon_index/.config.vsh.yaml index c4c1c0c9..1c2f85d8 100644 --- a/target/nextflow/salmon/salmon_index/.config.vsh.yaml +++ b/target/nextflow/salmon/salmon_index/.config.vsh.yaml @@ -277,9 +277,9 @@ build_info: output: "target/nextflow/salmon/salmon_index" executable: "target/nextflow/salmon/salmon_index/main.nf" viash_version: "0.9.0" - git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757" - git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox" - git_tag: "v0.2.0-26-gdd75d6f" + git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812" + git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-27-g402ad6a" package_config: name: "biobox" version: "add_sgdemux" diff --git a/target/nextflow/salmon/salmon_index/main.nf b/target/nextflow/salmon/salmon_index/main.nf index 6188d6f0..960217c7 100644 --- a/target/nextflow/salmon/salmon_index/main.nf +++ b/target/nextflow/salmon/salmon_index/main.nf @@ -3129,9 +3129,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/salmon/salmon_index", "viash_version" : "0.9.0", - "git_commit" : "dd75d6f397b5865acc31c39e7b613f8fb2989757", - "git_remote" : "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-26-gdd75d6f" + "git_commit" : "402ad6a813c0d0b141bbf8f9a3aab9c270a74812", + "git_remote" : "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-27-g402ad6a" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/salmon/salmon_quant/.config.vsh.yaml b/target/nextflow/salmon/salmon_quant/.config.vsh.yaml index ccdd83f4..b9301331 100644 --- a/target/nextflow/salmon/salmon_quant/.config.vsh.yaml +++ b/target/nextflow/salmon/salmon_quant/.config.vsh.yaml @@ -1173,9 +1173,9 @@ build_info: output: "target/nextflow/salmon/salmon_quant" executable: "target/nextflow/salmon/salmon_quant/main.nf" viash_version: "0.9.0" - git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757" - git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox" - git_tag: "v0.2.0-26-gdd75d6f" + git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812" + git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-27-g402ad6a" package_config: name: "biobox" version: "add_sgdemux" diff --git a/target/nextflow/salmon/salmon_quant/main.nf b/target/nextflow/salmon/salmon_quant/main.nf index 15880e94..eb7e00f0 100644 --- a/target/nextflow/salmon/salmon_quant/main.nf +++ b/target/nextflow/salmon/salmon_quant/main.nf @@ -3964,9 +3964,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/salmon/salmon_quant", "viash_version" : "0.9.0", - "git_commit" : "dd75d6f397b5865acc31c39e7b613f8fb2989757", - "git_remote" : "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-26-gdd75d6f" + "git_commit" : "402ad6a813c0d0b141bbf8f9a3aab9c270a74812", + "git_remote" : "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-27-g402ad6a" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/samtools/samtools_collate/.config.vsh.yaml b/target/nextflow/samtools/samtools_collate/.config.vsh.yaml index b2bcecc0..0cabcd28 100644 --- a/target/nextflow/samtools/samtools_collate/.config.vsh.yaml +++ b/target/nextflow/samtools/samtools_collate/.config.vsh.yaml @@ -264,9 +264,9 @@ build_info: output: "target/nextflow/samtools/samtools_collate" executable: "target/nextflow/samtools/samtools_collate/main.nf" viash_version: "0.9.0" - git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757" - git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox" - git_tag: "v0.2.0-26-gdd75d6f" + git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812" + git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-27-g402ad6a" package_config: name: "biobox" version: "add_sgdemux" diff --git a/target/nextflow/samtools/samtools_collate/main.nf b/target/nextflow/samtools/samtools_collate/main.nf index 8e4a2d3d..dffc484d 100644 --- a/target/nextflow/samtools/samtools_collate/main.nf +++ b/target/nextflow/samtools/samtools_collate/main.nf @@ -3140,9 +3140,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/samtools/samtools_collate", "viash_version" : "0.9.0", - "git_commit" : "dd75d6f397b5865acc31c39e7b613f8fb2989757", - "git_remote" : "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-26-gdd75d6f" + "git_commit" : "402ad6a813c0d0b141bbf8f9a3aab9c270a74812", + "git_remote" : "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-27-g402ad6a" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/samtools/samtools_faidx/.config.vsh.yaml b/target/nextflow/samtools/samtools_faidx/.config.vsh.yaml index e9e42770..0bf6b01c 100644 --- a/target/nextflow/samtools/samtools_faidx/.config.vsh.yaml +++ b/target/nextflow/samtools/samtools_faidx/.config.vsh.yaml @@ -243,9 +243,9 @@ build_info: output: "target/nextflow/samtools/samtools_faidx" executable: "target/nextflow/samtools/samtools_faidx/main.nf" viash_version: "0.9.0" - git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757" - git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox" - git_tag: "v0.2.0-26-gdd75d6f" + git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812" + git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-27-g402ad6a" package_config: name: "biobox" version: "add_sgdemux" diff --git a/target/nextflow/samtools/samtools_faidx/main.nf b/target/nextflow/samtools/samtools_faidx/main.nf index b55b179d..2729ffaa 100644 --- a/target/nextflow/samtools/samtools_faidx/main.nf +++ b/target/nextflow/samtools/samtools_faidx/main.nf @@ -3112,9 +3112,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/samtools/samtools_faidx", "viash_version" : "0.9.0", - "git_commit" : "dd75d6f397b5865acc31c39e7b613f8fb2989757", - "git_remote" : "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-26-gdd75d6f" + "git_commit" : "402ad6a813c0d0b141bbf8f9a3aab9c270a74812", + "git_remote" : "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-27-g402ad6a" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/samtools/samtools_fasta/.config.vsh.yaml b/target/nextflow/samtools/samtools_fasta/.config.vsh.yaml index 40226d65..03cf3c85 100644 --- a/target/nextflow/samtools/samtools_fasta/.config.vsh.yaml +++ b/target/nextflow/samtools/samtools_fasta/.config.vsh.yaml @@ -433,9 +433,9 @@ build_info: output: "target/nextflow/samtools/samtools_fasta" executable: "target/nextflow/samtools/samtools_fasta/main.nf" viash_version: "0.9.0" - git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757" - git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox" - git_tag: "v0.2.0-26-gdd75d6f" + git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812" + git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-27-g402ad6a" package_config: name: "biobox" version: "add_sgdemux" diff --git a/target/nextflow/samtools/samtools_fasta/main.nf b/target/nextflow/samtools/samtools_fasta/main.nf index c8d5d4de..0a9f7fb5 100644 --- a/target/nextflow/samtools/samtools_fasta/main.nf +++ b/target/nextflow/samtools/samtools_fasta/main.nf @@ -3304,9 +3304,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/samtools/samtools_fasta", "viash_version" : "0.9.0", - "git_commit" : "dd75d6f397b5865acc31c39e7b613f8fb2989757", - "git_remote" : "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-26-gdd75d6f" + "git_commit" : "402ad6a813c0d0b141bbf8f9a3aab9c270a74812", + "git_remote" : "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-27-g402ad6a" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/samtools/samtools_fastq/.config.vsh.yaml b/target/nextflow/samtools/samtools_fastq/.config.vsh.yaml index 38bb3787..ce91564d 100644 --- a/target/nextflow/samtools/samtools_fastq/.config.vsh.yaml +++ b/target/nextflow/samtools/samtools_fastq/.config.vsh.yaml @@ -433,9 +433,9 @@ build_info: output: "target/nextflow/samtools/samtools_fastq" executable: "target/nextflow/samtools/samtools_fastq/main.nf" viash_version: "0.9.0" - git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757" - git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox" - git_tag: "v0.2.0-26-gdd75d6f" + git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812" + git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-27-g402ad6a" package_config: name: "biobox" version: "add_sgdemux" diff --git a/target/nextflow/samtools/samtools_fastq/main.nf b/target/nextflow/samtools/samtools_fastq/main.nf index 09823835..270a5cc9 100644 --- a/target/nextflow/samtools/samtools_fastq/main.nf +++ b/target/nextflow/samtools/samtools_fastq/main.nf @@ -3304,9 +3304,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/samtools/samtools_fastq", "viash_version" : "0.9.0", - "git_commit" : "dd75d6f397b5865acc31c39e7b613f8fb2989757", - "git_remote" : "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-26-gdd75d6f" + "git_commit" : "402ad6a813c0d0b141bbf8f9a3aab9c270a74812", + "git_remote" : "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-27-g402ad6a" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/samtools/samtools_flagstat/.config.vsh.yaml b/target/nextflow/samtools/samtools_flagstat/.config.vsh.yaml index 915152f4..5641a4da 100644 --- a/target/nextflow/samtools/samtools_flagstat/.config.vsh.yaml +++ b/target/nextflow/samtools/samtools_flagstat/.config.vsh.yaml @@ -173,9 +173,9 @@ build_info: output: "target/nextflow/samtools/samtools_flagstat" executable: "target/nextflow/samtools/samtools_flagstat/main.nf" viash_version: "0.9.0" - git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757" - git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox" - git_tag: "v0.2.0-26-gdd75d6f" + git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812" + git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-27-g402ad6a" package_config: name: "biobox" version: "add_sgdemux" diff --git a/target/nextflow/samtools/samtools_flagstat/main.nf b/target/nextflow/samtools/samtools_flagstat/main.nf index 7fe027fb..451788a9 100644 --- a/target/nextflow/samtools/samtools_flagstat/main.nf +++ b/target/nextflow/samtools/samtools_flagstat/main.nf @@ -3028,9 +3028,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/samtools/samtools_flagstat", "viash_version" : "0.9.0", - "git_commit" : "dd75d6f397b5865acc31c39e7b613f8fb2989757", - "git_remote" : "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-26-gdd75d6f" + "git_commit" : "402ad6a813c0d0b141bbf8f9a3aab9c270a74812", + "git_remote" : "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-27-g402ad6a" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/samtools/samtools_idxstats/.config.vsh.yaml b/target/nextflow/samtools/samtools_idxstats/.config.vsh.yaml index 3a134a02..29058d78 100644 --- a/target/nextflow/samtools/samtools_idxstats/.config.vsh.yaml +++ b/target/nextflow/samtools/samtools_idxstats/.config.vsh.yaml @@ -183,9 +183,9 @@ build_info: output: "target/nextflow/samtools/samtools_idxstats" executable: "target/nextflow/samtools/samtools_idxstats/main.nf" viash_version: "0.9.0" - git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757" - git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox" - git_tag: "v0.2.0-26-gdd75d6f" + git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812" + git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-27-g402ad6a" package_config: name: "biobox" version: "add_sgdemux" diff --git a/target/nextflow/samtools/samtools_idxstats/main.nf b/target/nextflow/samtools/samtools_idxstats/main.nf index 32c30e8b..983916df 100644 --- a/target/nextflow/samtools/samtools_idxstats/main.nf +++ b/target/nextflow/samtools/samtools_idxstats/main.nf @@ -3040,9 +3040,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/samtools/samtools_idxstats", "viash_version" : "0.9.0", - "git_commit" : "dd75d6f397b5865acc31c39e7b613f8fb2989757", - "git_remote" : "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-26-gdd75d6f" + "git_commit" : "402ad6a813c0d0b141bbf8f9a3aab9c270a74812", + "git_remote" : "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-27-g402ad6a" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/samtools/samtools_index/.config.vsh.yaml b/target/nextflow/samtools/samtools_index/.config.vsh.yaml index e5e4cacf..f5a79eb6 100644 --- a/target/nextflow/samtools/samtools_index/.config.vsh.yaml +++ b/target/nextflow/samtools/samtools_index/.config.vsh.yaml @@ -189,9 +189,9 @@ build_info: output: "target/nextflow/samtools/samtools_index" executable: "target/nextflow/samtools/samtools_index/main.nf" viash_version: "0.9.0" - git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757" - git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox" - git_tag: "v0.2.0-26-gdd75d6f" + git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812" + git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-27-g402ad6a" package_config: name: "biobox" version: "add_sgdemux" diff --git a/target/nextflow/samtools/samtools_index/main.nf b/target/nextflow/samtools/samtools_index/main.nf index 38a46cac..2450ce12 100644 --- a/target/nextflow/samtools/samtools_index/main.nf +++ b/target/nextflow/samtools/samtools_index/main.nf @@ -3053,9 +3053,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/samtools/samtools_index", "viash_version" : "0.9.0", - "git_commit" : "dd75d6f397b5865acc31c39e7b613f8fb2989757", - "git_remote" : "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-26-gdd75d6f" + "git_commit" : "402ad6a813c0d0b141bbf8f9a3aab9c270a74812", + "git_remote" : "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-27-g402ad6a" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/samtools/samtools_sort/.config.vsh.yaml b/target/nextflow/samtools/samtools_sort/.config.vsh.yaml index 1a2905ca..f28ebc81 100644 --- a/target/nextflow/samtools/samtools_sort/.config.vsh.yaml +++ b/target/nextflow/samtools/samtools_sort/.config.vsh.yaml @@ -332,9 +332,9 @@ build_info: output: "target/nextflow/samtools/samtools_sort" executable: "target/nextflow/samtools/samtools_sort/main.nf" viash_version: "0.9.0" - git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757" - git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox" - git_tag: "v0.2.0-26-gdd75d6f" + git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812" + git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-27-g402ad6a" package_config: name: "biobox" version: "add_sgdemux" diff --git a/target/nextflow/samtools/samtools_sort/main.nf b/target/nextflow/samtools/samtools_sort/main.nf index eb5f04d2..c1a6d021 100644 --- a/target/nextflow/samtools/samtools_sort/main.nf +++ b/target/nextflow/samtools/samtools_sort/main.nf @@ -3225,9 +3225,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/samtools/samtools_sort", "viash_version" : "0.9.0", - "git_commit" : "dd75d6f397b5865acc31c39e7b613f8fb2989757", - "git_remote" : "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-26-gdd75d6f" + "git_commit" : "402ad6a813c0d0b141bbf8f9a3aab9c270a74812", + "git_remote" : "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-27-g402ad6a" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/samtools/samtools_stats/.config.vsh.yaml b/target/nextflow/samtools/samtools_stats/.config.vsh.yaml index a8725ed2..104246b2 100644 --- a/target/nextflow/samtools/samtools_stats/.config.vsh.yaml +++ b/target/nextflow/samtools/samtools_stats/.config.vsh.yaml @@ -401,9 +401,9 @@ build_info: output: "target/nextflow/samtools/samtools_stats" executable: "target/nextflow/samtools/samtools_stats/main.nf" viash_version: "0.9.0" - git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757" - git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox" - git_tag: "v0.2.0-26-gdd75d6f" + git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812" + git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-27-g402ad6a" package_config: name: "biobox" version: "add_sgdemux" diff --git a/target/nextflow/samtools/samtools_stats/main.nf b/target/nextflow/samtools/samtools_stats/main.nf index b0ea015f..88cf942e 100644 --- a/target/nextflow/samtools/samtools_stats/main.nf +++ b/target/nextflow/samtools/samtools_stats/main.nf @@ -3295,9 +3295,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/samtools/samtools_stats", "viash_version" : "0.9.0", - "git_commit" : "dd75d6f397b5865acc31c39e7b613f8fb2989757", - "git_remote" : "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-26-gdd75d6f" + "git_commit" : "402ad6a813c0d0b141bbf8f9a3aab9c270a74812", + "git_remote" : "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-27-g402ad6a" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/samtools/samtools_view/.config.vsh.yaml b/target/nextflow/samtools/samtools_view/.config.vsh.yaml index 7220c820..99b06b66 100644 --- a/target/nextflow/samtools/samtools_view/.config.vsh.yaml +++ b/target/nextflow/samtools/samtools_view/.config.vsh.yaml @@ -665,9 +665,9 @@ build_info: output: "target/nextflow/samtools/samtools_view" executable: "target/nextflow/samtools/samtools_view/main.nf" viash_version: "0.9.0" - git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757" - git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox" - git_tag: "v0.2.0-26-gdd75d6f" + git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812" + git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-27-g402ad6a" package_config: name: "biobox" version: "add_sgdemux" diff --git a/target/nextflow/samtools/samtools_view/main.nf b/target/nextflow/samtools/samtools_view/main.nf index 329b4c98..0ef4607c 100644 --- a/target/nextflow/samtools/samtools_view/main.nf +++ b/target/nextflow/samtools/samtools_view/main.nf @@ -3476,9 +3476,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/samtools/samtools_view", "viash_version" : "0.9.0", - "git_commit" : "dd75d6f397b5865acc31c39e7b613f8fb2989757", - "git_remote" : "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-26-gdd75d6f" + "git_commit" : "402ad6a813c0d0b141bbf8f9a3aab9c270a74812", + "git_remote" : "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-27-g402ad6a" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/seqtk/seqtk_sample/.config.vsh.yaml b/target/nextflow/seqtk/seqtk_sample/.config.vsh.yaml index 5c804eb1..01622b3c 100644 --- a/target/nextflow/seqtk/seqtk_sample/.config.vsh.yaml +++ b/target/nextflow/seqtk/seqtk_sample/.config.vsh.yaml @@ -173,9 +173,9 @@ build_info: output: "target/nextflow/seqtk/seqtk_sample" executable: "target/nextflow/seqtk/seqtk_sample/main.nf" viash_version: "0.9.0" - git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757" - git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox" - git_tag: "v0.2.0-26-gdd75d6f" + git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812" + git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-27-g402ad6a" package_config: name: "biobox" version: "add_sgdemux" diff --git a/target/nextflow/seqtk/seqtk_sample/main.nf b/target/nextflow/seqtk/seqtk_sample/main.nf index 6773637d..8f807759 100644 --- a/target/nextflow/seqtk/seqtk_sample/main.nf +++ b/target/nextflow/seqtk/seqtk_sample/main.nf @@ -3030,9 +3030,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/seqtk/seqtk_sample", "viash_version" : "0.9.0", - "git_commit" : "dd75d6f397b5865acc31c39e7b613f8fb2989757", - "git_remote" : "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-26-gdd75d6f" + "git_commit" : "402ad6a813c0d0b141bbf8f9a3aab9c270a74812", + "git_remote" : "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-27-g402ad6a" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/seqtk/seqtk_subseq/.config.vsh.yaml b/target/nextflow/seqtk/seqtk_subseq/.config.vsh.yaml index 1ddabf0e..73ca0b7a 100644 --- a/target/nextflow/seqtk/seqtk_subseq/.config.vsh.yaml +++ b/target/nextflow/seqtk/seqtk_subseq/.config.vsh.yaml @@ -196,9 +196,9 @@ build_info: output: "target/nextflow/seqtk/seqtk_subseq" executable: "target/nextflow/seqtk/seqtk_subseq/main.nf" viash_version: "0.9.0" - git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757" - git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox" - git_tag: "v0.2.0-26-gdd75d6f" + git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812" + git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-27-g402ad6a" package_config: name: "biobox" version: "add_sgdemux" diff --git a/target/nextflow/seqtk/seqtk_subseq/main.nf b/target/nextflow/seqtk/seqtk_subseq/main.nf index a67ec09b..a3e62c97 100644 --- a/target/nextflow/seqtk/seqtk_subseq/main.nf +++ b/target/nextflow/seqtk/seqtk_subseq/main.nf @@ -3060,9 +3060,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/seqtk/seqtk_subseq", "viash_version" : "0.9.0", - "git_commit" : "dd75d6f397b5865acc31c39e7b613f8fb2989757", - "git_remote" : "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-26-gdd75d6f" + "git_commit" : "402ad6a813c0d0b141bbf8f9a3aab9c270a74812", + "git_remote" : "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-27-g402ad6a" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/sgdemux/.config.vsh.yaml b/target/nextflow/sgdemux/.config.vsh.yaml index c4b036cc..43ca4ca2 100644 --- a/target/nextflow/sgdemux/.config.vsh.yaml +++ b/target/nextflow/sgdemux/.config.vsh.yaml @@ -429,9 +429,9 @@ build_info: output: "target/nextflow/sgdemux" executable: "target/nextflow/sgdemux/main.nf" viash_version: "0.9.0" - git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757" - git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox" - git_tag: "v0.2.0-26-gdd75d6f" + git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812" + git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-27-g402ad6a" package_config: name: "biobox" version: "add_sgdemux" diff --git a/target/nextflow/sgdemux/main.nf b/target/nextflow/sgdemux/main.nf index 741b8a08..b0157278 100644 --- a/target/nextflow/sgdemux/main.nf +++ b/target/nextflow/sgdemux/main.nf @@ -3303,9 +3303,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/sgdemux", "viash_version" : "0.9.0", - "git_commit" : "dd75d6f397b5865acc31c39e7b613f8fb2989757", - "git_remote" : "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-26-gdd75d6f" + "git_commit" : "402ad6a813c0d0b141bbf8f9a3aab9c270a74812", + "git_remote" : "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-27-g402ad6a" }, "package_config" : { "name" : "biobox", @@ -3428,10 +3428,32 @@ if [ "\\$par_most_unmatched_to_output" -eq "0" ] && [ ! -z "\\$par_most_frequent exit 1 fi +# The sgdemux documentation recommends the following settings: +# 1/3 of available threads for compression +# 1/6 of available threads for writing +# 1/6-1/3 of available threads for demultiplexing +declare -A thread_settings=(["compression_threads"]="3" + ["writing_threads"]="6" + ["demultiplexing_threads"]="3" + ) +if [ ! -z "\\$meta_cpus" ]; then + for setting_var in "\\${!thread_settings[@]}"; do + denominator=\\${thread_settings[\\$setting_var]} + result=\\$(( \\$meta_cpus / \\$denominator )) + if (( \\$result == 0 )); then + result=1 + fi + declare \\$setting_var=\\$result + done +fi + args=( --fastqs \\${fastqs[@]} --sample-metadata "\\$par_sample_metadata" --output-dir "\\$TMPDIR" + \\${demultiplexing_threads:+--demux-threads \\$demultiplexing_threads} + \\${writing_threads:+--writer-threads \\$writing_threads} + \\${compression_threads:+--compressor-threads \\$compression_threads} \\${par_allowed_mismatches:+--allowed-mismatches \\$par_allowed_mismatches} \\${par_min_delta:+--min-delta \\$par_min_delta} \\${par_free_ns:+--free-ns \\$par_free_ns} diff --git a/target/nextflow/snpeff/.config.vsh.yaml b/target/nextflow/snpeff/.config.vsh.yaml index 24e6d5d2..2fd225c6 100644 --- a/target/nextflow/snpeff/.config.vsh.yaml +++ b/target/nextflow/snpeff/.config.vsh.yaml @@ -628,9 +628,9 @@ build_info: output: "target/nextflow/snpeff" executable: "target/nextflow/snpeff/main.nf" viash_version: "0.9.0" - git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757" - git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox" - git_tag: "v0.2.0-26-gdd75d6f" + git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812" + git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-27-g402ad6a" package_config: name: "biobox" version: "add_sgdemux" diff --git a/target/nextflow/snpeff/main.nf b/target/nextflow/snpeff/main.nf index 6910ac52..ab4a8e14 100644 --- a/target/nextflow/snpeff/main.nf +++ b/target/nextflow/snpeff/main.nf @@ -3555,9 +3555,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/snpeff", "viash_version" : "0.9.0", - "git_commit" : "dd75d6f397b5865acc31c39e7b613f8fb2989757", - "git_remote" : "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-26-gdd75d6f" + "git_commit" : "402ad6a813c0d0b141bbf8f9a3aab9c270a74812", + "git_remote" : "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-27-g402ad6a" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/sortmerna/.config.vsh.yaml b/target/nextflow/sortmerna/.config.vsh.yaml index 3606dcff..47f3ec6c 100644 --- a/target/nextflow/sortmerna/.config.vsh.yaml +++ b/target/nextflow/sortmerna/.config.vsh.yaml @@ -594,9 +594,9 @@ build_info: output: "target/nextflow/sortmerna" executable: "target/nextflow/sortmerna/main.nf" viash_version: "0.9.0" - git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757" - git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox" - git_tag: "v0.2.0-26-gdd75d6f" + git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812" + git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-27-g402ad6a" package_config: name: "biobox" version: "add_sgdemux" diff --git a/target/nextflow/sortmerna/main.nf b/target/nextflow/sortmerna/main.nf index 642dce84..d1f36f89 100644 --- a/target/nextflow/sortmerna/main.nf +++ b/target/nextflow/sortmerna/main.nf @@ -3460,9 +3460,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/sortmerna", "viash_version" : "0.9.0", - "git_commit" : "dd75d6f397b5865acc31c39e7b613f8fb2989757", - "git_remote" : "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-26-gdd75d6f" + "git_commit" : "402ad6a813c0d0b141bbf8f9a3aab9c270a74812", + "git_remote" : "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-27-g402ad6a" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/star/star_align_reads/.config.vsh.yaml b/target/nextflow/star/star_align_reads/.config.vsh.yaml index ed4378d8..7cb5cfc9 100644 --- a/target/nextflow/star/star_align_reads/.config.vsh.yaml +++ b/target/nextflow/star/star_align_reads/.config.vsh.yaml @@ -2663,9 +2663,9 @@ build_info: output: "target/nextflow/star/star_align_reads" executable: "target/nextflow/star/star_align_reads/main.nf" viash_version: "0.9.0" - git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757" - git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox" - git_tag: "v0.2.0-26-gdd75d6f" + git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812" + git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-27-g402ad6a" package_config: name: "biobox" version: "add_sgdemux" diff --git a/target/nextflow/star/star_align_reads/main.nf b/target/nextflow/star/star_align_reads/main.nf index 20b6a6d0..fbec4e0b 100644 --- a/target/nextflow/star/star_align_reads/main.nf +++ b/target/nextflow/star/star_align_reads/main.nf @@ -5943,9 +5943,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/star/star_align_reads", "viash_version" : "0.9.0", - "git_commit" : "dd75d6f397b5865acc31c39e7b613f8fb2989757", - "git_remote" : "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-26-gdd75d6f" + "git_commit" : "402ad6a813c0d0b141bbf8f9a3aab9c270a74812", + "git_remote" : "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-27-g402ad6a" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/star/star_genome_generate/.config.vsh.yaml b/target/nextflow/star/star_genome_generate/.config.vsh.yaml index 95139f48..54d49879 100644 --- a/target/nextflow/star/star_genome_generate/.config.vsh.yaml +++ b/target/nextflow/star/star_genome_generate/.config.vsh.yaml @@ -333,9 +333,9 @@ build_info: output: "target/nextflow/star/star_genome_generate" executable: "target/nextflow/star/star_genome_generate/main.nf" viash_version: "0.9.0" - git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757" - git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox" - git_tag: "v0.2.0-26-gdd75d6f" + git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812" + git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-27-g402ad6a" package_config: name: "biobox" version: "add_sgdemux" diff --git a/target/nextflow/star/star_genome_generate/main.nf b/target/nextflow/star/star_genome_generate/main.nf index 0927dd9f..61d9a461 100644 --- a/target/nextflow/star/star_genome_generate/main.nf +++ b/target/nextflow/star/star_genome_generate/main.nf @@ -3195,9 +3195,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/star/star_genome_generate", "viash_version" : "0.9.0", - "git_commit" : "dd75d6f397b5865acc31c39e7b613f8fb2989757", - "git_remote" : "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-26-gdd75d6f" + "git_commit" : "402ad6a813c0d0b141bbf8f9a3aab9c270a74812", + "git_remote" : "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-27-g402ad6a" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/trimgalore/.config.vsh.yaml b/target/nextflow/trimgalore/.config.vsh.yaml index 08c10207..66793a6d 100644 --- a/target/nextflow/trimgalore/.config.vsh.yaml +++ b/target/nextflow/trimgalore/.config.vsh.yaml @@ -770,9 +770,9 @@ build_info: output: "target/nextflow/trimgalore" executable: "target/nextflow/trimgalore/main.nf" viash_version: "0.9.0" - git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757" - git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox" - git_tag: "v0.2.0-26-gdd75d6f" + git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812" + git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-27-g402ad6a" package_config: name: "biobox" version: "add_sgdemux" diff --git a/target/nextflow/trimgalore/main.nf b/target/nextflow/trimgalore/main.nf index 8793557d..22186fbb 100644 --- a/target/nextflow/trimgalore/main.nf +++ b/target/nextflow/trimgalore/main.nf @@ -3560,9 +3560,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/trimgalore", "viash_version" : "0.9.0", - "git_commit" : "dd75d6f397b5865acc31c39e7b613f8fb2989757", - "git_remote" : "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-26-gdd75d6f" + "git_commit" : "402ad6a813c0d0b141bbf8f9a3aab9c270a74812", + "git_remote" : "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-27-g402ad6a" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/umi_tools/umi_tools_dedup/.config.vsh.yaml b/target/nextflow/umi_tools/umi_tools_dedup/.config.vsh.yaml index 6b7bb3aa..42dd8bf8 100644 --- a/target/nextflow/umi_tools/umi_tools_dedup/.config.vsh.yaml +++ b/target/nextflow/umi_tools/umi_tools_dedup/.config.vsh.yaml @@ -611,9 +611,9 @@ build_info: output: "target/nextflow/umi_tools/umi_tools_dedup" executable: "target/nextflow/umi_tools/umi_tools_dedup/main.nf" viash_version: "0.9.0" - git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757" - git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox" - git_tag: "v0.2.0-26-gdd75d6f" + git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812" + git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-27-g402ad6a" package_config: name: "biobox" version: "add_sgdemux" diff --git a/target/nextflow/umi_tools/umi_tools_dedup/main.nf b/target/nextflow/umi_tools/umi_tools_dedup/main.nf index a2d5f643..abb415bf 100644 --- a/target/nextflow/umi_tools/umi_tools_dedup/main.nf +++ b/target/nextflow/umi_tools/umi_tools_dedup/main.nf @@ -3487,9 +3487,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/umi_tools/umi_tools_dedup", "viash_version" : "0.9.0", - "git_commit" : "dd75d6f397b5865acc31c39e7b613f8fb2989757", - "git_remote" : "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-26-gdd75d6f" + "git_commit" : "402ad6a813c0d0b141bbf8f9a3aab9c270a74812", + "git_remote" : "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-27-g402ad6a" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/umi_tools/umi_tools_extract/.config.vsh.yaml b/target/nextflow/umi_tools/umi_tools_extract/.config.vsh.yaml index 3194ce0a..2e82081e 100644 --- a/target/nextflow/umi_tools/umi_tools_extract/.config.vsh.yaml +++ b/target/nextflow/umi_tools/umi_tools_extract/.config.vsh.yaml @@ -434,9 +434,9 @@ build_info: output: "target/nextflow/umi_tools/umi_tools_extract" executable: "target/nextflow/umi_tools/umi_tools_extract/main.nf" viash_version: "0.9.0" - git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757" - git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox" - git_tag: "v0.2.0-26-gdd75d6f" + git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812" + git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-27-g402ad6a" package_config: name: "biobox" version: "add_sgdemux" diff --git a/target/nextflow/umi_tools/umi_tools_extract/main.nf b/target/nextflow/umi_tools/umi_tools_extract/main.nf index 7efcd833..f180a634 100644 --- a/target/nextflow/umi_tools/umi_tools_extract/main.nf +++ b/target/nextflow/umi_tools/umi_tools_extract/main.nf @@ -3299,9 +3299,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/umi_tools/umi_tools_extract", "viash_version" : "0.9.0", - "git_commit" : "dd75d6f397b5865acc31c39e7b613f8fb2989757", - "git_remote" : "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-26-gdd75d6f" + "git_commit" : "402ad6a813c0d0b141bbf8f9a3aab9c270a74812", + "git_remote" : "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-27-g402ad6a" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/umi_tools/umi_tools_prepareforrsem/.config.vsh.yaml b/target/nextflow/umi_tools/umi_tools_prepareforrsem/.config.vsh.yaml index 454c1f58..89a234df 100644 --- a/target/nextflow/umi_tools/umi_tools_prepareforrsem/.config.vsh.yaml +++ b/target/nextflow/umi_tools/umi_tools_prepareforrsem/.config.vsh.yaml @@ -256,9 +256,9 @@ build_info: output: "target/nextflow/umi_tools/umi_tools_prepareforrsem" executable: "target/nextflow/umi_tools/umi_tools_prepareforrsem/main.nf" viash_version: "0.9.0" - git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757" - git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox" - git_tag: "v0.2.0-26-gdd75d6f" + git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812" + git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-27-g402ad6a" package_config: name: "biobox" version: "add_sgdemux" diff --git a/target/nextflow/umi_tools/umi_tools_prepareforrsem/main.nf b/target/nextflow/umi_tools/umi_tools_prepareforrsem/main.nf index 39e8a5b4..f56e53bb 100644 --- a/target/nextflow/umi_tools/umi_tools_prepareforrsem/main.nf +++ b/target/nextflow/umi_tools/umi_tools_prepareforrsem/main.nf @@ -3121,9 +3121,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/umi_tools/umi_tools_prepareforrsem", "viash_version" : "0.9.0", - "git_commit" : "dd75d6f397b5865acc31c39e7b613f8fb2989757", - "git_remote" : "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-26-gdd75d6f" + "git_commit" : "402ad6a813c0d0b141bbf8f9a3aab9c270a74812", + "git_remote" : "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-27-g402ad6a" }, "package_config" : { "name" : "biobox",