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Build branch main with version main (ad89f43)

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Build pipeline: viash-hub.biobox.main-dkgvl

Source commit: ad89f43726

Source message: Add authors to package config and update author information (#180)

* Add authors to package config and update author information

* update changelog

* add linkedin
This commit is contained in:
CI
2025-06-16 10:27:22 +00:00
parent e3be4c4461
commit 93f55cc2ee
418 changed files with 55602 additions and 29307 deletions
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137
target/executable/rseqc/rseqc_bamstat/.config.vsh.yaml
View File

@@ -8,13 +8,8 @@ authors:
- "maintainer"
info:
links:
email: "emma@data-intuitive.com"
github: "emmarousseau"
linkedin: "emmarousseau1"
organizations:
- name: "Data Intuitive"
href: "https://www.data-intuitive.com"
role: "Bioinformatician"
argument_groups:
- name: "Input"
arguments:
@@ -178,9 +173,9 @@ build_info:
output: "target/executable/rseqc/rseqc_bamstat"
executable: "target/executable/rseqc/rseqc_bamstat/rseqc_bamstat"
viash_version: "0.9.4"
git_commit: "b0db228825f3441b4651527e8775e8fc87d06e60"
git_commit: "ad89f437262d32b7cf7afcdfc31b363fc698e8ca"
git_remote: "https://github.com/viash-hub/biobox"
git_tag: "v0.2.0-35-gb0db228"
git_tag: "v0.2.0-36-gad89f43"
package_config:
name: "biobox"
version: "main"
@@ -205,6 +200,134 @@ package_config:
- ".engines += { type: \"native\" }"
- ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
- ".engines[.type == 'docker'].target_tag := 'main'"
authors:
- name: "Robrecht Cannoodt"
roles:
- "author"
- "maintainer"
info:
links:
email: "robrecht@data-intuitive.com"
github: "rcannood"
orcid: "0000-0003-3641-729X"
linkedin: "robrechtcannoodt"
organizations:
- name: "Data Intuitive"
href: "https://www.data-intuitive.com"
role: "Data Science Engineer"
- name: "Open Problems"
href: "https://openproblems.bio"
role: "Core Member"
- name: "Angela Oliveira Pisco"
roles:
- "author"
info:
role: "Contributor"
links:
github: "aopisco"
orcid: "0000-0003-0142-2355"
linkedin: "aopisco"
organizations:
- name: "Insitro"
href: "https://insitro.com"
role: "Director of Computational Biology"
- name: "Open Problems"
href: "https://openproblems.bio"
role: "Core Member"
- name: "Dorien Roosen"
roles:
- "author"
info:
links:
email: "dorien@data-intuitive.com"
github: "dorien-er"
linkedin: "dorien-roosen"
organizations:
- name: "Data Intuitive"
href: "https://www.data-intuitive.com"
role: "Data Scientist"
- name: "Dries Schaumont"
roles:
- "author"
info:
links:
email: "dries@data-intuitive.com"
github: "DriesSchaumont"
orcid: "0000-0002-4389-0440"
linkedin: "dries-schaumont"
organizations:
- name: "Data Intuitive"
href: "https://www.data-intuitive.com"
role: "Data Scientist"
- name: "Emma Rousseau"
roles:
- "author"
info:
links:
github: "emmarousseau"
linkedin: "emmarousseau1"
- name: "Jakub Majercik"
roles:
- "author"
info:
links:
email: "jakub@data-intuitive.com"
github: "jakubmajercik"
linkedin: "jakubmajercik"
organizations:
- name: "Data Intuitive"
href: "https://www.data-intuitive.com"
role: "Bioinformatics Engineer"
- name: "Kai Waldrant"
roles:
- "author"
info:
links:
github: "KaiWaldrant"
orcid: "0009-0003-8555-1361"
linkedin: "kaiwaldrant"
- name: "Leïla Paquay"
roles:
- "author"
info:
links:
github: "Leila011"
linkedin: "leilapaquay"
- name: "Sai Nirmayi Yasa"
roles:
- "author"
info:
links:
github: "sainirmayi"
linkedin: "sai-nirmayi-yasa"
- name: "Theodoro Gasperin Terra Camargo"
roles:
- "author"
info:
links:
email: "theodorogtc@gmail.com"
github: "tgaspe"
linkedin: "theodoro-gasperin-terra-camargo"
- name: "Toni Verbeiren"
roles:
- "author"
info:
links:
github: "tverbeiren"
linkedin: "verbeiren"
organizations:
- name: "Data Intuitive"
href: "https://www.data-intuitive.com"
role: "Data Scientist and CEO"
- name: "Weiwei Schultz"
roles:
- "author"
info:
links:
linkedin: "weiwei-schultz"
organizations:
- name: "Janssen R&D US"
role: "Associate Director Data Sciences"
keywords:
- "bioinformatics"
- "modules"

4
target/executable/rseqc/rseqc_bamstat/rseqc_bamstat
View File

@@ -455,9 +455,9 @@ RUN echo "RSeQC bam_stat.py: $(bam_stat.py --version | cut -d' ' -f2-)" > /var/s
LABEL org.opencontainers.image.authors="Emma Rousseau"
LABEL org.opencontainers.image.description="Companion container for running component rseqc rseqc_bamstat"
LABEL org.opencontainers.image.created="2025-05-06T20:11:43Z"
LABEL org.opencontainers.image.created="2025-06-16T10:11:23Z"
LABEL org.opencontainers.image.source="https://github.com/MonashBioinformaticsPlatform/RSeQC"
LABEL org.opencontainers.image.revision="b0db228825f3441b4651527e8775e8fc87d06e60"
LABEL org.opencontainers.image.revision="ad89f437262d32b7cf7afcdfc31b363fc698e8ca"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

137
target/executable/rseqc/rseqc_inferexperiment/.config.vsh.yaml
View File

@@ -8,13 +8,8 @@ authors:
- "maintainer"
info:
links:
email: "emma@data-intuitive.com"
github: "emmarousseau"
linkedin: "emmarousseau1"
organizations:
- name: "Data Intuitive"
href: "https://www.data-intuitive.com"
role: "Bioinformatician"
argument_groups:
- name: "Input"
arguments:
@@ -204,9 +199,9 @@ build_info:
output: "target/executable/rseqc/rseqc_inferexperiment"
executable: "target/executable/rseqc/rseqc_inferexperiment/rseqc_inferexperiment"
viash_version: "0.9.4"
git_commit: "b0db228825f3441b4651527e8775e8fc87d06e60"
git_commit: "ad89f437262d32b7cf7afcdfc31b363fc698e8ca"
git_remote: "https://github.com/viash-hub/biobox"
git_tag: "v0.2.0-35-gb0db228"
git_tag: "v0.2.0-36-gad89f43"
package_config:
name: "biobox"
version: "main"
@@ -231,6 +226,134 @@ package_config:
- ".engines += { type: \"native\" }"
- ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
- ".engines[.type == 'docker'].target_tag := 'main'"
authors:
- name: "Robrecht Cannoodt"
roles:
- "author"
- "maintainer"
info:
links:
email: "robrecht@data-intuitive.com"
github: "rcannood"
orcid: "0000-0003-3641-729X"
linkedin: "robrechtcannoodt"
organizations:
- name: "Data Intuitive"
href: "https://www.data-intuitive.com"
role: "Data Science Engineer"
- name: "Open Problems"
href: "https://openproblems.bio"
role: "Core Member"
- name: "Angela Oliveira Pisco"
roles:
- "author"
info:
role: "Contributor"
links:
github: "aopisco"
orcid: "0000-0003-0142-2355"
linkedin: "aopisco"
organizations:
- name: "Insitro"
href: "https://insitro.com"
role: "Director of Computational Biology"
- name: "Open Problems"
href: "https://openproblems.bio"
role: "Core Member"
- name: "Dorien Roosen"
roles:
- "author"
info:
links:
email: "dorien@data-intuitive.com"
github: "dorien-er"
linkedin: "dorien-roosen"
organizations:
- name: "Data Intuitive"
href: "https://www.data-intuitive.com"
role: "Data Scientist"
- name: "Dries Schaumont"
roles:
- "author"
info:
links:
email: "dries@data-intuitive.com"
github: "DriesSchaumont"
orcid: "0000-0002-4389-0440"
linkedin: "dries-schaumont"
organizations:
- name: "Data Intuitive"
href: "https://www.data-intuitive.com"
role: "Data Scientist"
- name: "Emma Rousseau"
roles:
- "author"
info:
links:
github: "emmarousseau"
linkedin: "emmarousseau1"
- name: "Jakub Majercik"
roles:
- "author"
info:
links:
email: "jakub@data-intuitive.com"
github: "jakubmajercik"
linkedin: "jakubmajercik"
organizations:
- name: "Data Intuitive"
href: "https://www.data-intuitive.com"
role: "Bioinformatics Engineer"
- name: "Kai Waldrant"
roles:
- "author"
info:
links:
github: "KaiWaldrant"
orcid: "0009-0003-8555-1361"
linkedin: "kaiwaldrant"
- name: "Leïla Paquay"
roles:
- "author"
info:
links:
github: "Leila011"
linkedin: "leilapaquay"
- name: "Sai Nirmayi Yasa"
roles:
- "author"
info:
links:
github: "sainirmayi"
linkedin: "sai-nirmayi-yasa"
- name: "Theodoro Gasperin Terra Camargo"
roles:
- "author"
info:
links:
email: "theodorogtc@gmail.com"
github: "tgaspe"
linkedin: "theodoro-gasperin-terra-camargo"
- name: "Toni Verbeiren"
roles:
- "author"
info:
links:
github: "tverbeiren"
linkedin: "verbeiren"
organizations:
- name: "Data Intuitive"
href: "https://www.data-intuitive.com"
role: "Data Scientist and CEO"
- name: "Weiwei Schultz"
roles:
- "author"
info:
links:
linkedin: "weiwei-schultz"
organizations:
- name: "Janssen R&D US"
role: "Associate Director Data Sciences"
keywords:
- "bioinformatics"
- "modules"

4
target/executable/rseqc/rseqc_inferexperiment/rseqc_inferexperiment
View File

@@ -455,9 +455,9 @@ RUN echo "RSeQC - infer_experiment.py: $(infer_experiment.py --version | cut -d'
LABEL org.opencontainers.image.authors="Emma Rousseau"
LABEL org.opencontainers.image.description="Companion container for running component rseqc rseqc_inferexperiment"
LABEL org.opencontainers.image.created="2025-05-06T20:11:42Z"
LABEL org.opencontainers.image.created="2025-06-16T10:11:24Z"
LABEL org.opencontainers.image.source="https://github.com/MonashBioinformaticsPlatform/RSeQC"
LABEL org.opencontainers.image.revision="b0db228825f3441b4651527e8775e8fc87d06e60"
LABEL org.opencontainers.image.revision="ad89f437262d32b7cf7afcdfc31b363fc698e8ca"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

137
target/executable/rseqc/rseqc_inner_distance/.config.vsh.yaml
View File

@@ -8,13 +8,8 @@ authors:
- "maintainer"
info:
links:
email: "emma@data-intuitive.com"
github: "emmarousseau"
linkedin: "emmarousseau1"
organizations:
- name: "Data Intuitive"
href: "https://www.data-intuitive.com"
role: "Bioinformatician"
argument_groups:
- name: "Input"
arguments:
@@ -297,9 +292,9 @@ build_info:
output: "target/executable/rseqc/rseqc_inner_distance"
executable: "target/executable/rseqc/rseqc_inner_distance/rseqc_inner_distance"
viash_version: "0.9.4"
git_commit: "b0db228825f3441b4651527e8775e8fc87d06e60"
git_commit: "ad89f437262d32b7cf7afcdfc31b363fc698e8ca"
git_remote: "https://github.com/viash-hub/biobox"
git_tag: "v0.2.0-35-gb0db228"
git_tag: "v0.2.0-36-gad89f43"
package_config:
name: "biobox"
version: "main"
@@ -324,6 +319,134 @@ package_config:
- ".engines += { type: \"native\" }"
- ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
- ".engines[.type == 'docker'].target_tag := 'main'"
authors:
- name: "Robrecht Cannoodt"
roles:
- "author"
- "maintainer"
info:
links:
email: "robrecht@data-intuitive.com"
github: "rcannood"
orcid: "0000-0003-3641-729X"
linkedin: "robrechtcannoodt"
organizations:
- name: "Data Intuitive"
href: "https://www.data-intuitive.com"
role: "Data Science Engineer"
- name: "Open Problems"
href: "https://openproblems.bio"
role: "Core Member"
- name: "Angela Oliveira Pisco"
roles:
- "author"
info:
role: "Contributor"
links:
github: "aopisco"
orcid: "0000-0003-0142-2355"
linkedin: "aopisco"
organizations:
- name: "Insitro"
href: "https://insitro.com"
role: "Director of Computational Biology"
- name: "Open Problems"
href: "https://openproblems.bio"
role: "Core Member"
- name: "Dorien Roosen"
roles:
- "author"
info:
links:
email: "dorien@data-intuitive.com"
github: "dorien-er"
linkedin: "dorien-roosen"
organizations:
- name: "Data Intuitive"
href: "https://www.data-intuitive.com"
role: "Data Scientist"
- name: "Dries Schaumont"
roles:
- "author"
info:
links:
email: "dries@data-intuitive.com"
github: "DriesSchaumont"
orcid: "0000-0002-4389-0440"
linkedin: "dries-schaumont"
organizations:
- name: "Data Intuitive"
href: "https://www.data-intuitive.com"
role: "Data Scientist"
- name: "Emma Rousseau"
roles:
- "author"
info:
links:
github: "emmarousseau"
linkedin: "emmarousseau1"
- name: "Jakub Majercik"
roles:
- "author"
info:
links:
email: "jakub@data-intuitive.com"
github: "jakubmajercik"
linkedin: "jakubmajercik"
organizations:
- name: "Data Intuitive"
href: "https://www.data-intuitive.com"
role: "Bioinformatics Engineer"
- name: "Kai Waldrant"
roles:
- "author"
info:
links:
github: "KaiWaldrant"
orcid: "0009-0003-8555-1361"
linkedin: "kaiwaldrant"
- name: "Leïla Paquay"
roles:
- "author"
info:
links:
github: "Leila011"
linkedin: "leilapaquay"
- name: "Sai Nirmayi Yasa"
roles:
- "author"
info:
links:
github: "sainirmayi"
linkedin: "sai-nirmayi-yasa"
- name: "Theodoro Gasperin Terra Camargo"
roles:
- "author"
info:
links:
email: "theodorogtc@gmail.com"
github: "tgaspe"
linkedin: "theodoro-gasperin-terra-camargo"
- name: "Toni Verbeiren"
roles:
- "author"
info:
links:
github: "tverbeiren"
linkedin: "verbeiren"
organizations:
- name: "Data Intuitive"
href: "https://www.data-intuitive.com"
role: "Data Scientist and CEO"
- name: "Weiwei Schultz"
roles:
- "author"
info:
links:
linkedin: "weiwei-schultz"
organizations:
- name: "Janssen R&D US"
role: "Associate Director Data Sciences"
keywords:
- "bioinformatics"
- "modules"

4
target/executable/rseqc/rseqc_inner_distance/rseqc_inner_distance
View File

@@ -459,9 +459,9 @@ RUN echo "RSeQC - inner_distance.py: $(inner_distance.py --version | cut -d' ' -
LABEL org.opencontainers.image.authors="Emma Rousseau"
LABEL org.opencontainers.image.description="Companion container for running component rseqc rseqc_inner_distance"
LABEL org.opencontainers.image.created="2025-05-06T20:11:42Z"
LABEL org.opencontainers.image.created="2025-06-16T10:11:24Z"
LABEL org.opencontainers.image.source="https://github.com/MonashBioinformaticsPlatform/RSeQC"
LABEL org.opencontainers.image.revision="b0db228825f3441b4651527e8775e8fc87d06e60"
LABEL org.opencontainers.image.revision="ad89f437262d32b7cf7afcdfc31b363fc698e8ca"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER