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Build branch main with version main (3481750)

Browse Source 
Build pipeline: viash-hub.biobox.main-2mtst

Source commit: 3481750f6e

Source message: Output alignments to the transcriptome (#56)

* Output alignments to  the transcriptome

* Change argument name
This commit is contained in:
CI
2024-06-24 09:29:59 +00:00
parent 9c30676332
commit 9747a7a8d9
117 changed files with 243 additions and 286 deletions
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2
target/executable/samtools/samtools_collate/.config.vsh.yaml
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@@ -250,7 +250,7 @@ build_info:
output: "target/executable/samtools/samtools_collate"
executable: "target/executable/samtools/samtools_collate/samtools_collate"
viash_version: "0.9.0-RC6"
git_commit: "d0c648fb7eefe067f5b5b3d402a204354bb37198"
git_commit: "3481750f6e2d77defa28423d832ff251da3a1f9e"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

4
target/executable/samtools/samtools_collate/samtools_collate
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@@ -514,9 +514,9 @@ RUN samtools --version 2>&1 | grep -E '^(samtools|Using htslib)' | \
sed 's#Using ##;s# \([0-9\.]*\)$#: \1#' > /var/software_versions.txt
LABEL org.opencontainers.image.description="Companion container for running component samtools samtools_collate"
LABEL org.opencontainers.image.created="2024-06-24T08:36:40Z"
LABEL org.opencontainers.image.created="2024-06-24T09:14:56Z"
LABEL org.opencontainers.image.source="https://github.com/samtools/samtools"
LABEL org.opencontainers.image.revision="d0c648fb7eefe067f5b5b3d402a204354bb37198"
LABEL org.opencontainers.image.revision="3481750f6e2d77defa28423d832ff251da3a1f9e"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

2
target/executable/samtools/samtools_faidx/.config.vsh.yaml
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@@ -229,7 +229,7 @@ build_info:
output: "target/executable/samtools/samtools_faidx"
executable: "target/executable/samtools/samtools_faidx/samtools_faidx"
viash_version: "0.9.0-RC6"
git_commit: "d0c648fb7eefe067f5b5b3d402a204354bb37198"
git_commit: "3481750f6e2d77defa28423d832ff251da3a1f9e"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

4
target/executable/samtools/samtools_faidx/samtools_faidx
View File

@@ -507,9 +507,9 @@ RUN samtools --version 2>&1 | grep -E '^(samtools|Using htslib)' | \
sed 's#Using ##;s# \([0-9\.]*\)$#: \1#' > /var/software_versions.txt
LABEL org.opencontainers.image.description="Companion container for running component samtools samtools_faidx"
LABEL org.opencontainers.image.created="2024-06-24T08:36:38Z"
LABEL org.opencontainers.image.created="2024-06-24T09:14:54Z"
LABEL org.opencontainers.image.source="https://github.com/samtools/samtools"
LABEL org.opencontainers.image.revision="d0c648fb7eefe067f5b5b3d402a204354bb37198"
LABEL org.opencontainers.image.revision="3481750f6e2d77defa28423d832ff251da3a1f9e"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

2
target/executable/samtools/samtools_fastq/.config.vsh.yaml
View File

@@ -417,7 +417,7 @@ build_info:
output: "target/executable/samtools/samtools_fastq"
executable: "target/executable/samtools/samtools_fastq/samtools_fastq"
viash_version: "0.9.0-RC6"
git_commit: "d0c648fb7eefe067f5b5b3d402a204354bb37198"
git_commit: "3481750f6e2d77defa28423d832ff251da3a1f9e"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

4
target/executable/samtools/samtools_fastq/samtools_fastq
View File

@@ -620,9 +620,9 @@ RUN samtools --version 2>&1 | grep -E '^(samtools|Using htslib)' | \
sed 's#Using ##;s# \([0-9\.]*\)$#: \1#' > /var/software_versions.txt
LABEL org.opencontainers.image.description="Companion container for running component samtools samtools_fastq"
LABEL org.opencontainers.image.created="2024-06-24T08:36:41Z"
LABEL org.opencontainers.image.created="2024-06-24T09:14:56Z"
LABEL org.opencontainers.image.source="https://github.com/samtools/samtools"
LABEL org.opencontainers.image.revision="d0c648fb7eefe067f5b5b3d402a204354bb37198"
LABEL org.opencontainers.image.revision="3481750f6e2d77defa28423d832ff251da3a1f9e"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

2
target/executable/samtools/samtools_flagstat/.config.vsh.yaml
View File

@@ -159,7 +159,7 @@ build_info:
output: "target/executable/samtools/samtools_flagstat"
executable: "target/executable/samtools/samtools_flagstat/samtools_flagstat"
viash_version: "0.9.0-RC6"
git_commit: "d0c648fb7eefe067f5b5b3d402a204354bb37198"
git_commit: "3481750f6e2d77defa28423d832ff251da3a1f9e"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

4
target/executable/samtools/samtools_flagstat/samtools_flagstat
View File

@@ -469,9 +469,9 @@ RUN samtools --version 2>&1 | grep -E '^(samtools|Using htslib)' | \
sed 's#Using ##;s# \([0-9\.]*\)$#: \1#' > /var/software_versions.txt
LABEL org.opencontainers.image.description="Companion container for running component samtools samtools_flagstat"
LABEL org.opencontainers.image.created="2024-06-24T08:36:40Z"
LABEL org.opencontainers.image.created="2024-06-24T09:14:55Z"
LABEL org.opencontainers.image.source="https://github.com/samtools/samtools"
LABEL org.opencontainers.image.revision="d0c648fb7eefe067f5b5b3d402a204354bb37198"
LABEL org.opencontainers.image.revision="3481750f6e2d77defa28423d832ff251da3a1f9e"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

2
target/executable/samtools/samtools_idxstats/.config.vsh.yaml
View File

@@ -169,7 +169,7 @@ build_info:
output: "target/executable/samtools/samtools_idxstats"
executable: "target/executable/samtools/samtools_idxstats/samtools_idxstats"
viash_version: "0.9.0-RC6"
git_commit: "d0c648fb7eefe067f5b5b3d402a204354bb37198"
git_commit: "3481750f6e2d77defa28423d832ff251da3a1f9e"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

4
target/executable/samtools/samtools_idxstats/samtools_idxstats
View File

@@ -473,9 +473,9 @@ RUN samtools --version 2>&1 | grep -E '^(samtools|Using htslib)' | \
sed 's#Using ##;s# \([0-9\.]*\)$#: \1#' > /var/software_versions.txt
LABEL org.opencontainers.image.description="Companion container for running component samtools samtools_idxstats"
LABEL org.opencontainers.image.created="2024-06-24T08:36:39Z"
LABEL org.opencontainers.image.created="2024-06-24T09:14:54Z"
LABEL org.opencontainers.image.source="https://github.com/samtools/samtools"
LABEL org.opencontainers.image.revision="d0c648fb7eefe067f5b5b3d402a204354bb37198"
LABEL org.opencontainers.image.revision="3481750f6e2d77defa28423d832ff251da3a1f9e"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

2
target/executable/samtools/samtools_index/.config.vsh.yaml
View File

@@ -175,7 +175,7 @@ build_info:
output: "target/executable/samtools/samtools_index"
executable: "target/executable/samtools/samtools_index/samtools_index"
viash_version: "0.9.0-RC6"
git_commit: "d0c648fb7eefe067f5b5b3d402a204354bb37198"
git_commit: "3481750f6e2d77defa28423d832ff251da3a1f9e"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

4
target/executable/samtools/samtools_index/samtools_index
View File

@@ -480,9 +480,9 @@ RUN samtools --version 2>&1 | grep -E '^(samtools|Using htslib)' | \
sed 's#Using ##;s# \([0-9\.]*\)$#: \1#' > /var/software_versions.txt
LABEL org.opencontainers.image.description="Companion container for running component samtools samtools_index"
LABEL org.opencontainers.image.created="2024-06-24T08:36:40Z"
LABEL org.opencontainers.image.created="2024-06-24T09:14:55Z"
LABEL org.opencontainers.image.source="https://github.com/samtools/samtools"
LABEL org.opencontainers.image.revision="d0c648fb7eefe067f5b5b3d402a204354bb37198"
LABEL org.opencontainers.image.revision="3481750f6e2d77defa28423d832ff251da3a1f9e"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

2
target/executable/samtools/samtools_sort/.config.vsh.yaml
View File

@@ -318,7 +318,7 @@ build_info:
output: "target/executable/samtools/samtools_sort"
executable: "target/executable/samtools/samtools_sort/samtools_sort"
viash_version: "0.9.0-RC6"
git_commit: "d0c648fb7eefe067f5b5b3d402a204354bb37198"
git_commit: "3481750f6e2d77defa28423d832ff251da3a1f9e"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

4
target/executable/samtools/samtools_sort/samtools_sort
View File

@@ -551,9 +551,9 @@ RUN samtools --version 2>&1 | grep -E '^(samtools|Using htslib)' | \
sed 's#Using ##;s# \([0-9\.]*\)$#: \1#' > /var/software_versions.txt
LABEL org.opencontainers.image.description="Companion container for running component samtools samtools_sort"
LABEL org.opencontainers.image.created="2024-06-24T08:36:39Z"
LABEL org.opencontainers.image.created="2024-06-24T09:14:54Z"
LABEL org.opencontainers.image.source="https://github.com/samtools/samtools"
LABEL org.opencontainers.image.revision="d0c648fb7eefe067f5b5b3d402a204354bb37198"
LABEL org.opencontainers.image.revision="3481750f6e2d77defa28423d832ff251da3a1f9e"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

2
target/executable/samtools/samtools_stats/.config.vsh.yaml
View File

@@ -380,7 +380,7 @@ build_info:
output: "target/executable/samtools/samtools_stats"
executable: "target/executable/samtools/samtools_stats/samtools_stats"
viash_version: "0.9.0-RC6"
git_commit: "d0c648fb7eefe067f5b5b3d402a204354bb37198"
git_commit: "3481750f6e2d77defa28423d832ff251da3a1f9e"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

4
target/executable/samtools/samtools_stats/samtools_stats
View File

@@ -568,9 +568,9 @@ RUN samtools --version 2>&1 | grep -E '^(samtools|Using htslib)' | \
sed 's#Using ##;s# \([0-9\.]*\)$#: \1#' > /var/software_versions.txt
LABEL org.opencontainers.image.description="Companion container for running component samtools samtools_stats"
LABEL org.opencontainers.image.created="2024-06-24T08:36:39Z"
LABEL org.opencontainers.image.created="2024-06-24T09:14:55Z"
LABEL org.opencontainers.image.source="https://github.com/samtools/samtools"
LABEL org.opencontainers.image.revision="d0c648fb7eefe067f5b5b3d402a204354bb37198"
LABEL org.opencontainers.image.revision="3481750f6e2d77defa28423d832ff251da3a1f9e"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

2
target/executable/samtools/samtools_view/.config.vsh.yaml
View File

@@ -651,7 +651,7 @@ build_info:
output: "target/executable/samtools/samtools_view"
executable: "target/executable/samtools/samtools_view/samtools_view"
viash_version: "0.9.0-RC6"
git_commit: "d0c648fb7eefe067f5b5b3d402a204354bb37198"
git_commit: "3481750f6e2d77defa28423d832ff251da3a1f9e"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

4
target/executable/samtools/samtools_view/samtools_view
View File

@@ -820,9 +820,9 @@ RUN samtools --version 2>&1 | grep -E '^(samtools|Using htslib)' | \
sed 's#Using ##;s# \([0-9\.]*\)$#: \1#' > /var/software_versions.txt
LABEL org.opencontainers.image.description="Companion container for running component samtools samtools_view"
LABEL org.opencontainers.image.created="2024-06-24T08:36:38Z"
LABEL org.opencontainers.image.created="2024-06-24T09:14:53Z"
LABEL org.opencontainers.image.source="https://github.com/samtools/samtools"
LABEL org.opencontainers.image.revision="d0c648fb7eefe067f5b5b3d402a204354bb37198"
LABEL org.opencontainers.image.revision="3481750f6e2d77defa28423d832ff251da3a1f9e"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER