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Build branch main with version main (fe56ee7)

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Build pipeline: viash-hub.biobox.main-fjg6k

Source commit: fe56ee7c53

Source message: change output quant file to an optional argument (#151)
This commit is contained in:
CI
2024-09-13 07:33:08 +00:00
parent af89cea364
commit 97f1502b57
242 changed files with 319 additions and 323 deletions
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2
target/executable/agat/agat_convert_bed2gff/.config.vsh.yaml
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@@ -235,7 +235,7 @@ build_info:
output: "target/executable/agat/agat_convert_bed2gff"
executable: "target/executable/agat/agat_convert_bed2gff/agat_convert_bed2gff"
viash_version: "0.9.0-RC7"
git_commit: "80aaf333dc1245b8bbec9aa7b628d85c5e413f4b"
git_commit: "fe56ee7c53ca30f25aa31cb9a025e17cd75b636e"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

4
target/executable/agat/agat_convert_bed2gff/agat_convert_bed2gff
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@@ -515,9 +515,9 @@ RUN agat --version | sed 's/AGAT\s\(.*\)/agat: "\1"/' > /var/software_versions.t
LABEL org.opencontainers.image.authors="Leïla Paquay"
LABEL org.opencontainers.image.description="Companion container for running component agat agat_convert_bed2gff"
LABEL org.opencontainers.image.created="2024-09-13T07:15:57Z"
LABEL org.opencontainers.image.created="2024-09-13T07:20:32Z"
LABEL org.opencontainers.image.source="https://github.com/NBISweden/AGAT"
LABEL org.opencontainers.image.revision="80aaf333dc1245b8bbec9aa7b628d85c5e413f4b"
LABEL org.opencontainers.image.revision="fe56ee7c53ca30f25aa31cb9a025e17cd75b636e"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

2
target/executable/agat/agat_convert_embl2gff/.config.vsh.yaml
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@@ -225,7 +225,7 @@ build_info:
output: "target/executable/agat/agat_convert_embl2gff"
executable: "target/executable/agat/agat_convert_embl2gff/agat_convert_embl2gff"
viash_version: "0.9.0-RC7"
git_commit: "80aaf333dc1245b8bbec9aa7b628d85c5e413f4b"
git_commit: "fe56ee7c53ca30f25aa31cb9a025e17cd75b636e"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

4
target/executable/agat/agat_convert_embl2gff/agat_convert_embl2gff
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@@ -505,9 +505,9 @@ RUN agat --version | sed 's/AGAT\s\(.*\)/agat: "\1"/' > /var/software_versions.t
LABEL org.opencontainers.image.authors="Leïla Paquay"
LABEL org.opencontainers.image.description="Companion container for running component agat agat_convert_embl2gff"
LABEL org.opencontainers.image.created="2024-09-13T07:15:57Z"
LABEL org.opencontainers.image.created="2024-09-13T07:20:32Z"
LABEL org.opencontainers.image.source="https://github.com/NBISweden/AGAT"
LABEL org.opencontainers.image.revision="80aaf333dc1245b8bbec9aa7b628d85c5e413f4b"
LABEL org.opencontainers.image.revision="fe56ee7c53ca30f25aa31cb9a025e17cd75b636e"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

2
target/executable/agat/agat_convert_sp_gff2gtf/.config.vsh.yaml
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@@ -228,7 +228,7 @@ build_info:
output: "target/executable/agat/agat_convert_sp_gff2gtf"
executable: "target/executable/agat/agat_convert_sp_gff2gtf/agat_convert_sp_gff2gtf"
viash_version: "0.9.0-RC7"
git_commit: "80aaf333dc1245b8bbec9aa7b628d85c5e413f4b"
git_commit: "fe56ee7c53ca30f25aa31cb9a025e17cd75b636e"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

4
target/executable/agat/agat_convert_sp_gff2gtf/agat_convert_sp_gff2gtf
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@@ -519,9 +519,9 @@ RUN agat --version | sed 's/AGAT\s\(.*\)/agat: "\1"/' > /var/software_versions.t
LABEL org.opencontainers.image.authors="Leïla Paquay"
LABEL org.opencontainers.image.description="Companion container for running component agat agat_convert_sp_gff2gtf"
LABEL org.opencontainers.image.created="2024-09-13T07:15:57Z"
LABEL org.opencontainers.image.created="2024-09-13T07:20:33Z"
LABEL org.opencontainers.image.source="https://github.com/NBISweden/AGAT"
LABEL org.opencontainers.image.revision="80aaf333dc1245b8bbec9aa7b628d85c5e413f4b"
LABEL org.opencontainers.image.revision="fe56ee7c53ca30f25aa31cb9a025e17cd75b636e"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

2
target/executable/agat/agat_convert_sp_gff2tsv/.config.vsh.yaml
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@@ -188,7 +188,7 @@ build_info:
output: "target/executable/agat/agat_convert_sp_gff2tsv"
executable: "target/executable/agat/agat_convert_sp_gff2tsv/agat_convert_sp_gff2tsv"
viash_version: "0.9.0-RC7"
git_commit: "80aaf333dc1245b8bbec9aa7b628d85c5e413f4b"
git_commit: "fe56ee7c53ca30f25aa31cb9a025e17cd75b636e"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

4
target/executable/agat/agat_convert_sp_gff2tsv/agat_convert_sp_gff2tsv
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@@ -484,9 +484,9 @@ RUN agat --version | sed 's/AGAT\s\(.*\)/agat: "\1"/' > /var/software_versions.t
LABEL org.opencontainers.image.authors="Leïla Paquay"
LABEL org.opencontainers.image.description="Companion container for running component agat agat_convert_sp_gff2tsv"
LABEL org.opencontainers.image.created="2024-09-13T07:15:56Z"
LABEL org.opencontainers.image.created="2024-09-13T07:20:32Z"
LABEL org.opencontainers.image.source="https://github.com/NBISweden/AGAT"
LABEL org.opencontainers.image.revision="80aaf333dc1245b8bbec9aa7b628d85c5e413f4b"
LABEL org.opencontainers.image.revision="fe56ee7c53ca30f25aa31cb9a025e17cd75b636e"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

2
target/executable/agat/agat_convert_sp_gxf2gxf/.config.vsh.yaml
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@@ -195,7 +195,7 @@ build_info:
output: "target/executable/agat/agat_convert_sp_gxf2gxf"
executable: "target/executable/agat/agat_convert_sp_gxf2gxf/agat_convert_sp_gxf2gxf"
viash_version: "0.9.0-RC7"
git_commit: "80aaf333dc1245b8bbec9aa7b628d85c5e413f4b"
git_commit: "fe56ee7c53ca30f25aa31cb9a025e17cd75b636e"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

4
target/executable/agat/agat_convert_sp_gxf2gxf/agat_convert_sp_gxf2gxf
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@@ -493,9 +493,9 @@ RUN agat --version | sed 's/AGAT\s\(.*\)/agat: "\1"/' > /var/software_versions.t
LABEL org.opencontainers.image.authors="Leïla Paquay"
LABEL org.opencontainers.image.description="Companion container for running component agat agat_convert_sp_gxf2gxf"
LABEL org.opencontainers.image.created="2024-09-13T07:15:56Z"
LABEL org.opencontainers.image.created="2024-09-13T07:20:31Z"
LABEL org.opencontainers.image.source="https://github.com/NBISweden/AGAT"
LABEL org.opencontainers.image.revision="80aaf333dc1245b8bbec9aa7b628d85c5e413f4b"
LABEL org.opencontainers.image.revision="fe56ee7c53ca30f25aa31cb9a025e17cd75b636e"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

2
target/executable/arriba/.config.vsh.yaml
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@@ -706,7 +706,7 @@ build_info:
output: "target/executable/arriba"
executable: "target/executable/arriba/arriba"
viash_version: "0.9.0-RC7"
git_commit: "80aaf333dc1245b8bbec9aa7b628d85c5e413f4b"
git_commit: "fe56ee7c53ca30f25aa31cb9a025e17cd75b636e"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

4
target/executable/arriba/arriba
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@@ -754,9 +754,9 @@ RUN arriba -h | grep 'Version:' 2>&1 | sed 's/Version:\s\(.*\)/arriba: "\1"/' >
LABEL org.opencontainers.image.authors="Robrecht Cannoodt"
LABEL org.opencontainers.image.description="Companion container for running component arriba"
LABEL org.opencontainers.image.created="2024-09-13T07:15:59Z"
LABEL org.opencontainers.image.created="2024-09-13T07:20:34Z"
LABEL org.opencontainers.image.source="https://github.com/suhrig/arriba"
LABEL org.opencontainers.image.revision="80aaf333dc1245b8bbec9aa7b628d85c5e413f4b"
LABEL org.opencontainers.image.revision="fe56ee7c53ca30f25aa31cb9a025e17cd75b636e"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

2
target/executable/bcftools/bcftools_annotate/.config.vsh.yaml
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@@ -469,7 +469,7 @@ build_info:
output: "target/executable/bcftools/bcftools_annotate"
executable: "target/executable/bcftools/bcftools_annotate/bcftools_annotate"
viash_version: "0.9.0-RC7"
git_commit: "80aaf333dc1245b8bbec9aa7b628d85c5e413f4b"
git_commit: "fe56ee7c53ca30f25aa31cb9a025e17cd75b636e"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

4
target/executable/bcftools/bcftools_annotate/bcftools_annotate
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@@ -650,9 +650,9 @@ RUN echo "bcftools: \"$(bcftools --version | grep 'bcftools' | sed -n 's/^bcftoo
LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo"
LABEL org.opencontainers.image.description="Companion container for running component bcftools bcftools_annotate"
LABEL org.opencontainers.image.created="2024-09-13T07:15:50Z"
LABEL org.opencontainers.image.created="2024-09-13T07:20:26Z"
LABEL org.opencontainers.image.source="https://github.com/samtools/bcftools"
LABEL org.opencontainers.image.revision="80aaf333dc1245b8bbec9aa7b628d85c5e413f4b"
LABEL org.opencontainers.image.revision="fe56ee7c53ca30f25aa31cb9a025e17cd75b636e"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

2
target/executable/bcftools/bcftools_concat/.config.vsh.yaml
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@@ -335,7 +335,7 @@ build_info:
output: "target/executable/bcftools/bcftools_concat"
executable: "target/executable/bcftools/bcftools_concat/bcftools_concat"
viash_version: "0.9.0-RC7"
git_commit: "80aaf333dc1245b8bbec9aa7b628d85c5e413f4b"
git_commit: "fe56ee7c53ca30f25aa31cb9a025e17cd75b636e"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

4
target/executable/bcftools/bcftools_concat/bcftools_concat
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@@ -566,9 +566,9 @@ RUN echo "bcftools: \"$(bcftools --version | grep 'bcftools' | sed -n 's/^bcftoo
LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo"
LABEL org.opencontainers.image.description="Companion container for running component bcftools bcftools_concat"
LABEL org.opencontainers.image.created="2024-09-13T07:15:51Z"
LABEL org.opencontainers.image.created="2024-09-13T07:20:26Z"
LABEL org.opencontainers.image.source="https://github.com/samtools/bcftools"
LABEL org.opencontainers.image.revision="80aaf333dc1245b8bbec9aa7b628d85c5e413f4b"
LABEL org.opencontainers.image.revision="fe56ee7c53ca30f25aa31cb9a025e17cd75b636e"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

2
target/executable/bcftools/bcftools_norm/.config.vsh.yaml
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@@ -416,7 +416,7 @@ build_info:
output: "target/executable/bcftools/bcftools_norm"
executable: "target/executable/bcftools/bcftools_norm/bcftools_norm"
viash_version: "0.9.0-RC7"
git_commit: "80aaf333dc1245b8bbec9aa7b628d85c5e413f4b"
git_commit: "fe56ee7c53ca30f25aa31cb9a025e17cd75b636e"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

4
target/executable/bcftools/bcftools_norm/bcftools_norm
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@@ -589,9 +589,9 @@ RUN echo "bcftools: \"$(bcftools --version | grep 'bcftools' | sed -n 's/^bcftoo
LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo"
LABEL org.opencontainers.image.description="Companion container for running component bcftools bcftools_norm"
LABEL org.opencontainers.image.created="2024-09-13T07:15:51Z"
LABEL org.opencontainers.image.created="2024-09-13T07:20:27Z"
LABEL org.opencontainers.image.source="https://github.com/samtools/bcftools"
LABEL org.opencontainers.image.revision="80aaf333dc1245b8bbec9aa7b628d85c5e413f4b"
LABEL org.opencontainers.image.revision="fe56ee7c53ca30f25aa31cb9a025e17cd75b636e"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

2
target/executable/bcftools/bcftools_sort/.config.vsh.yaml
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@@ -185,7 +185,7 @@ build_info:
output: "target/executable/bcftools/bcftools_sort"
executable: "target/executable/bcftools/bcftools_sort/bcftools_sort"
viash_version: "0.9.0-RC7"
git_commit: "80aaf333dc1245b8bbec9aa7b628d85c5e413f4b"
git_commit: "fe56ee7c53ca30f25aa31cb9a025e17cd75b636e"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

4
target/executable/bcftools/bcftools_sort/bcftools_sort
View File

@@ -483,9 +483,9 @@ RUN echo "bcftools: \"$(bcftools --version | grep 'bcftools' | sed -n 's/^bcftoo
LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo"
LABEL org.opencontainers.image.description="Companion container for running component bcftools bcftools_sort"
LABEL org.opencontainers.image.created="2024-09-13T07:15:50Z"
LABEL org.opencontainers.image.created="2024-09-13T07:20:25Z"
LABEL org.opencontainers.image.source="https://github.com/samtools/bcftools"
LABEL org.opencontainers.image.revision="80aaf333dc1245b8bbec9aa7b628d85c5e413f4b"
LABEL org.opencontainers.image.revision="fe56ee7c53ca30f25aa31cb9a025e17cd75b636e"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

2
target/executable/bcftools/bcftools_stats/.config.vsh.yaml
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@@ -458,7 +458,7 @@ build_info:
output: "target/executable/bcftools/bcftools_stats"
executable: "target/executable/bcftools/bcftools_stats/bcftools_stats"
viash_version: "0.9.0-RC7"
git_commit: "80aaf333dc1245b8bbec9aa7b628d85c5e413f4b"
git_commit: "fe56ee7c53ca30f25aa31cb9a025e17cd75b636e"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

4
target/executable/bcftools/bcftools_stats/bcftools_stats
View File

@@ -626,9 +626,9 @@ RUN echo "bcftools: \"$(bcftools --version | grep 'bcftools' | sed -n 's/^bcftoo
LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo"
LABEL org.opencontainers.image.description="Companion container for running component bcftools bcftools_stats"
LABEL org.opencontainers.image.created="2024-09-13T07:15:51Z"
LABEL org.opencontainers.image.created="2024-09-13T07:20:26Z"
LABEL org.opencontainers.image.source="https://github.com/samtools/bcftools"
LABEL org.opencontainers.image.revision="80aaf333dc1245b8bbec9aa7b628d85c5e413f4b"
LABEL org.opencontainers.image.revision="fe56ee7c53ca30f25aa31cb9a025e17cd75b636e"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

2
target/executable/bcl_convert/.config.vsh.yaml
View File

@@ -418,7 +418,7 @@ build_info:
output: "target/executable/bcl_convert"
executable: "target/executable/bcl_convert/bcl_convert"
viash_version: "0.9.0-RC7"
git_commit: "80aaf333dc1245b8bbec9aa7b628d85c5e413f4b"
git_commit: "fe56ee7c53ca30f25aa31cb9a025e17cd75b636e"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

4
target/executable/bcl_convert/bcl_convert
View File

@@ -599,9 +599,9 @@ RUN echo "bcl-convert: \"$(bcl-convert -V 2>&1 >/dev/null | sed -n '/Version/ s/
LABEL org.opencontainers.image.authors="Toni Verbeiren, Dorien Roosen"
LABEL org.opencontainers.image.description="Companion container for running component bcl_convert"
LABEL org.opencontainers.image.created="2024-09-13T07:15:58Z"
LABEL org.opencontainers.image.created="2024-09-13T07:20:34Z"
LABEL org.opencontainers.image.source="https://github.com/viash-hub/biobox"
LABEL org.opencontainers.image.revision="80aaf333dc1245b8bbec9aa7b628d85c5e413f4b"
LABEL org.opencontainers.image.revision="fe56ee7c53ca30f25aa31cb9a025e17cd75b636e"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

2
target/executable/bd_rhapsody/bd_rhapsody_make_reference/.config.vsh.yaml
View File

@@ -270,7 +270,7 @@ build_info:
output: "target/executable/bd_rhapsody/bd_rhapsody_make_reference"
executable: "target/executable/bd_rhapsody/bd_rhapsody_make_reference/bd_rhapsody_make_reference"
viash_version: "0.9.0-RC7"
git_commit: "80aaf333dc1245b8bbec9aa7b628d85c5e413f4b"
git_commit: "fe56ee7c53ca30f25aa31cb9a025e17cd75b636e"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

4
target/executable/bd_rhapsody/bd_rhapsody_make_reference/bd_rhapsody_make_reference
View File

@@ -549,9 +549,9 @@ RUN echo "bdgenomics/rhapsody: 2.2.1" > /var/software_versions.txt
LABEL org.opencontainers.image.authors="Robrecht Cannoodt, Weiwei Schultz"
LABEL org.opencontainers.image.description="Companion container for running component bd_rhapsody bd_rhapsody_make_reference"
LABEL org.opencontainers.image.created="2024-09-13T07:16:02Z"
LABEL org.opencontainers.image.created="2024-09-13T07:20:37Z"
LABEL org.opencontainers.image.source="https://bitbucket.org/CRSwDev/cwl/src/master/v2.2.1/Extra_Utilities/"
LABEL org.opencontainers.image.revision="80aaf333dc1245b8bbec9aa7b628d85c5e413f4b"
LABEL org.opencontainers.image.revision="fe56ee7c53ca30f25aa31cb9a025e17cd75b636e"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

2
target/executable/bedtools/bedtools_bamtofastq/.config.vsh.yaml
View File

@@ -187,7 +187,7 @@ build_info:
output: "target/executable/bedtools/bedtools_bamtofastq"
executable: "target/executable/bedtools/bedtools_bamtofastq/bedtools_bamtofastq"
viash_version: "0.9.0-RC7"
git_commit: "80aaf333dc1245b8bbec9aa7b628d85c5e413f4b"
git_commit: "fe56ee7c53ca30f25aa31cb9a025e17cd75b636e"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

4
target/executable/bedtools/bedtools_bamtofastq/bedtools_bamtofastq
View File

@@ -483,9 +483,9 @@ RUN echo "bedtools: \"$(bedtools --version | sed -n 's/^bedtools //p')\"" > /var
LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo"
LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_bamtofastq"
LABEL org.opencontainers.image.created="2024-09-13T07:15:43Z"
LABEL org.opencontainers.image.created="2024-09-13T07:20:18Z"
LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2"
LABEL org.opencontainers.image.revision="80aaf333dc1245b8bbec9aa7b628d85c5e413f4b"
LABEL org.opencontainers.image.revision="fe56ee7c53ca30f25aa31cb9a025e17cd75b636e"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

2
target/executable/bedtools/bedtools_bed12tobed6/.config.vsh.yaml
View File

@@ -176,7 +176,7 @@ build_info:
output: "target/executable/bedtools/bedtools_bed12tobed6"
executable: "target/executable/bedtools/bedtools_bed12tobed6/bedtools_bed12tobed6"
viash_version: "0.9.0-RC7"
git_commit: "80aaf333dc1245b8bbec9aa7b628d85c5e413f4b"
git_commit: "fe56ee7c53ca30f25aa31cb9a025e17cd75b636e"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

4
target/executable/bedtools/bedtools_bed12tobed6/bedtools_bed12tobed6
View File

@@ -480,9 +480,9 @@ RUN echo "bedtools: \"$(bedtools --version | sed -n 's/^bedtools //p')\"" > /var
LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo"
LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_bed12tobed6"
LABEL org.opencontainers.image.created="2024-09-13T07:15:41Z"
LABEL org.opencontainers.image.created="2024-09-13T07:20:16Z"
LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2"
LABEL org.opencontainers.image.revision="80aaf333dc1245b8bbec9aa7b628d85c5e413f4b"
LABEL org.opencontainers.image.revision="fe56ee7c53ca30f25aa31cb9a025e17cd75b636e"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

2
target/executable/bedtools/bedtools_bedtobam/.config.vsh.yaml
View File

@@ -214,7 +214,7 @@ build_info:
output: "target/executable/bedtools/bedtools_bedtobam"
executable: "target/executable/bedtools/bedtools_bedtobam/bedtools_bedtobam"
viash_version: "0.9.0-RC7"
git_commit: "80aaf333dc1245b8bbec9aa7b628d85c5e413f4b"
git_commit: "fe56ee7c53ca30f25aa31cb9a025e17cd75b636e"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

4
target/executable/bedtools/bedtools_bedtobam/bedtools_bedtobam
View File

@@ -496,9 +496,9 @@ RUN echo "bedtools: \"$(bedtools --version | sed -n 's/^bedtools //p')\"" > /var
LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo"
LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_bedtobam"
LABEL org.opencontainers.image.created="2024-09-13T07:15:44Z"
LABEL org.opencontainers.image.created="2024-09-13T07:20:19Z"
LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2"
LABEL org.opencontainers.image.revision="80aaf333dc1245b8bbec9aa7b628d85c5e413f4b"
LABEL org.opencontainers.image.revision="fe56ee7c53ca30f25aa31cb9a025e17cd75b636e"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

2
target/executable/bedtools/bedtools_genomecov/.config.vsh.yaml
View File

@@ -337,7 +337,7 @@ build_info:
output: "target/executable/bedtools/bedtools_genomecov"
executable: "target/executable/bedtools/bedtools_genomecov/bedtools_genomecov"
viash_version: "0.9.0-RC7"
git_commit: "80aaf333dc1245b8bbec9aa7b628d85c5e413f4b"
git_commit: "fe56ee7c53ca30f25aa31cb9a025e17cd75b636e"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

4
target/executable/bedtools/bedtools_genomecov/bedtools_genomecov
View File

@@ -591,9 +591,9 @@ RUN echo "bedtools: \"$(bedtools --version | sed -n 's/^bedtools //p')\"" > /var
LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo"
LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_genomecov"
LABEL org.opencontainers.image.created="2024-09-13T07:15:41Z"
LABEL org.opencontainers.image.created="2024-09-13T07:20:16Z"
LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2"
LABEL org.opencontainers.image.revision="80aaf333dc1245b8bbec9aa7b628d85c5e413f4b"
LABEL org.opencontainers.image.revision="fe56ee7c53ca30f25aa31cb9a025e17cd75b636e"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

2
target/executable/bedtools/bedtools_getfasta/.config.vsh.yaml
View File

@@ -232,7 +232,7 @@ build_info:
output: "target/executable/bedtools/bedtools_getfasta"
executable: "target/executable/bedtools/bedtools_getfasta/bedtools_getfasta"
viash_version: "0.9.0-RC7"
git_commit: "80aaf333dc1245b8bbec9aa7b628d85c5e413f4b"
git_commit: "fe56ee7c53ca30f25aa31cb9a025e17cd75b636e"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

4
target/executable/bedtools/bedtools_getfasta/bedtools_getfasta
View File

@@ -526,9 +526,9 @@ RUN echo "bedtools: \"$(bedtools --version | sed -n 's/^bedtools //p')\"" > /var
LABEL org.opencontainers.image.authors="Dries Schaumont"
LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_getfasta"
LABEL org.opencontainers.image.created="2024-09-13T07:15:42Z"
LABEL org.opencontainers.image.created="2024-09-13T07:20:17Z"
LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2"
LABEL org.opencontainers.image.revision="80aaf333dc1245b8bbec9aa7b628d85c5e413f4b"
LABEL org.opencontainers.image.revision="fe56ee7c53ca30f25aa31cb9a025e17cd75b636e"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

2
target/executable/bedtools/bedtools_groupby/.config.vsh.yaml
View File

@@ -273,7 +273,7 @@ build_info:
output: "target/executable/bedtools/bedtools_groupby"
executable: "target/executable/bedtools/bedtools_groupby/bedtools_groupby"
viash_version: "0.9.0-RC7"
git_commit: "80aaf333dc1245b8bbec9aa7b628d85c5e413f4b"
git_commit: "fe56ee7c53ca30f25aa31cb9a025e17cd75b636e"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

4
target/executable/bedtools/bedtools_groupby/bedtools_groupby
View File

@@ -552,9 +552,9 @@ RUN echo "bedtools: \"$(bedtools --version | sed -n 's/^bedtools //p')\"" > /var
LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo"
LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_groupby"
LABEL org.opencontainers.image.created="2024-09-13T07:15:43Z"
LABEL org.opencontainers.image.created="2024-09-13T07:20:18Z"
LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2"
LABEL org.opencontainers.image.revision="80aaf333dc1245b8bbec9aa7b628d85c5e413f4b"
LABEL org.opencontainers.image.revision="fe56ee7c53ca30f25aa31cb9a025e17cd75b636e"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

2
target/executable/bedtools/bedtools_intersect/.config.vsh.yaml
View File

@@ -410,7 +410,7 @@ build_info:
output: "target/executable/bedtools/bedtools_intersect"
executable: "target/executable/bedtools/bedtools_intersect/bedtools_intersect"
viash_version: "0.9.0-RC7"
git_commit: "80aaf333dc1245b8bbec9aa7b628d85c5e413f4b"
git_commit: "fe56ee7c53ca30f25aa31cb9a025e17cd75b636e"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

4
target/executable/bedtools/bedtools_intersect/bedtools_intersect
View File

@@ -633,9 +633,9 @@ RUN echo "bedtools: \"$(bedtools --version | sed -n 's/^bedtools //p')\"" > /var
LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo"
LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_intersect"
LABEL org.opencontainers.image.created="2024-09-13T07:15:42Z"
LABEL org.opencontainers.image.created="2024-09-13T07:20:17Z"
LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2"
LABEL org.opencontainers.image.revision="80aaf333dc1245b8bbec9aa7b628d85c5e413f4b"
LABEL org.opencontainers.image.revision="fe56ee7c53ca30f25aa31cb9a025e17cd75b636e"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

2
target/executable/bedtools/bedtools_links/.config.vsh.yaml
View File

@@ -210,7 +210,7 @@ build_info:
output: "target/executable/bedtools/bedtools_links"
executable: "target/executable/bedtools/bedtools_links/bedtools_links"
viash_version: "0.9.0-RC7"
git_commit: "80aaf333dc1245b8bbec9aa7b628d85c5e413f4b"
git_commit: "fe56ee7c53ca30f25aa31cb9a025e17cd75b636e"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

4
target/executable/bedtools/bedtools_links/bedtools_links
View File

@@ -500,9 +500,9 @@ RUN echo "bedtools: \"$(bedtools --version | sed -n 's/^bedtools //p')\"" > /var
LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo"
LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_links"
LABEL org.opencontainers.image.created="2024-09-13T07:15:42Z"
LABEL org.opencontainers.image.created="2024-09-13T07:20:18Z"
LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2"
LABEL org.opencontainers.image.revision="80aaf333dc1245b8bbec9aa7b628d85c5e413f4b"
LABEL org.opencontainers.image.revision="fe56ee7c53ca30f25aa31cb9a025e17cd75b636e"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

2
target/executable/bedtools/bedtools_merge/.config.vsh.yaml
View File

@@ -279,7 +279,7 @@ build_info:
output: "target/executable/bedtools/bedtools_merge"
executable: "target/executable/bedtools/bedtools_merge/bedtools_merge"
viash_version: "0.9.0-RC7"
git_commit: "80aaf333dc1245b8bbec9aa7b628d85c5e413f4b"
git_commit: "fe56ee7c53ca30f25aa31cb9a025e17cd75b636e"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

4
target/executable/bedtools/bedtools_merge/bedtools_merge
View File

@@ -558,9 +558,9 @@ RUN echo "bedtools: \"$(bedtools --version | sed -n 's/^bedtools //p')\"" > /var
LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo"
LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_merge"
LABEL org.opencontainers.image.created="2024-09-13T07:15:41Z"
LABEL org.opencontainers.image.created="2024-09-13T07:20:16Z"
LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2"
LABEL org.opencontainers.image.revision="80aaf333dc1245b8bbec9aa7b628d85c5e413f4b"
LABEL org.opencontainers.image.revision="fe56ee7c53ca30f25aa31cb9a025e17cd75b636e"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

2
target/executable/bedtools/bedtools_sort/.config.vsh.yaml
View File

@@ -222,7 +222,7 @@ build_info:
output: "target/executable/bedtools/bedtools_sort"
executable: "target/executable/bedtools/bedtools_sort/bedtools_sort"
viash_version: "0.9.0-RC7"
git_commit: "80aaf333dc1245b8bbec9aa7b628d85c5e413f4b"
git_commit: "fe56ee7c53ca30f25aa31cb9a025e17cd75b636e"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

4
target/executable/bedtools/bedtools_sort/bedtools_sort
View File

@@ -509,9 +509,9 @@ RUN echo "bedtools: \"$(bedtools --version | sed -n 's/^bedtools //p')\"" > /var
LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo"
LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_sort"
LABEL org.opencontainers.image.created="2024-09-13T07:15:43Z"
LABEL org.opencontainers.image.created="2024-09-13T07:20:18Z"
LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2"
LABEL org.opencontainers.image.revision="80aaf333dc1245b8bbec9aa7b628d85c5e413f4b"
LABEL org.opencontainers.image.revision="fe56ee7c53ca30f25aa31cb9a025e17cd75b636e"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

2
target/executable/busco/busco_download_datasets/.config.vsh.yaml
View File

@@ -158,7 +158,7 @@ build_info:
output: "target/executable/busco/busco_download_datasets"
executable: "target/executable/busco/busco_download_datasets/busco_download_datasets"
viash_version: "0.9.0-RC7"
git_commit: "80aaf333dc1245b8bbec9aa7b628d85c5e413f4b"
git_commit: "fe56ee7c53ca30f25aa31cb9a025e17cd75b636e"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

4
target/executable/busco/busco_download_datasets/busco_download_datasets
View File

@@ -475,9 +475,9 @@ RUN busco --version | sed 's/BUSCO\s\(.*\)/busco: "\1"/' > /var/software_version
LABEL org.opencontainers.image.authors="Dorien Roosen"
LABEL org.opencontainers.image.description="Companion container for running component busco busco_download_datasets"
LABEL org.opencontainers.image.created="2024-09-13T07:15:54Z"
LABEL org.opencontainers.image.created="2024-09-13T07:20:30Z"
LABEL org.opencontainers.image.source="https://gitlab.com/ezlab/busco"
LABEL org.opencontainers.image.revision="80aaf333dc1245b8bbec9aa7b628d85c5e413f4b"
LABEL org.opencontainers.image.revision="fe56ee7c53ca30f25aa31cb9a025e17cd75b636e"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

2
target/executable/busco/busco_list_datasets/.config.vsh.yaml
View File

@@ -145,7 +145,7 @@ build_info:
output: "target/executable/busco/busco_list_datasets"
executable: "target/executable/busco/busco_list_datasets/busco_list_datasets"
viash_version: "0.9.0-RC7"
git_commit: "80aaf333dc1245b8bbec9aa7b628d85c5e413f4b"
git_commit: "fe56ee7c53ca30f25aa31cb9a025e17cd75b636e"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

4
target/executable/busco/busco_list_datasets/busco_list_datasets
View File

@@ -465,9 +465,9 @@ RUN busco --version | sed 's/BUSCO\s\(.*\)/busco: "\1"/' > /var/software_version
LABEL org.opencontainers.image.authors="Dorien Roosen"
LABEL org.opencontainers.image.description="Companion container for running component busco busco_list_datasets"
LABEL org.opencontainers.image.created="2024-09-13T07:15:55Z"
LABEL org.opencontainers.image.created="2024-09-13T07:20:30Z"
LABEL org.opencontainers.image.source="https://gitlab.com/ezlab/busco"
LABEL org.opencontainers.image.revision="80aaf333dc1245b8bbec9aa7b628d85c5e413f4b"
LABEL org.opencontainers.image.revision="fe56ee7c53ca30f25aa31cb9a025e17cd75b636e"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

2
target/executable/busco/busco_run/.config.vsh.yaml
View File

@@ -423,7 +423,7 @@ build_info:
output: "target/executable/busco/busco_run"
executable: "target/executable/busco/busco_run/busco_run"
viash_version: "0.9.0-RC7"
git_commit: "80aaf333dc1245b8bbec9aa7b628d85c5e413f4b"
git_commit: "fe56ee7c53ca30f25aa31cb9a025e17cd75b636e"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

4
target/executable/busco/busco_run/busco_run
View File

@@ -632,9 +632,9 @@ RUN busco --version | sed 's/BUSCO\s\(.*\)/busco: "\1"/' > /var/software_version
LABEL org.opencontainers.image.authors="Dorien Roosen"
LABEL org.opencontainers.image.description="Companion container for running component busco busco_run"
LABEL org.opencontainers.image.created="2024-09-13T07:15:55Z"
LABEL org.opencontainers.image.created="2024-09-13T07:20:30Z"
LABEL org.opencontainers.image.source="https://gitlab.com/ezlab/busco"
LABEL org.opencontainers.image.revision="80aaf333dc1245b8bbec9aa7b628d85c5e413f4b"
LABEL org.opencontainers.image.revision="fe56ee7c53ca30f25aa31cb9a025e17cd75b636e"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

2
target/executable/cutadapt/.config.vsh.yaml
View File

@@ -740,7 +740,7 @@ build_info:
output: "target/executable/cutadapt"
executable: "target/executable/cutadapt/cutadapt"
viash_version: "0.9.0-RC7"
git_commit: "80aaf333dc1245b8bbec9aa7b628d85c5e413f4b"
git_commit: "fe56ee7c53ca30f25aa31cb9a025e17cd75b636e"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

4
target/executable/cutadapt/cutadapt
View File

@@ -831,9 +831,9 @@ RUN cutadapt --version | sed 's/\(.*\)/cutadapt: "\1"/' > /var/software_versions
LABEL org.opencontainers.image.authors="Toni Verbeiren"
LABEL org.opencontainers.image.description="Companion container for running component cutadapt"
LABEL org.opencontainers.image.created="2024-09-13T07:16:00Z"
LABEL org.opencontainers.image.created="2024-09-13T07:20:36Z"
LABEL org.opencontainers.image.source="https://github.com/marcelm/cutadapt"
LABEL org.opencontainers.image.revision="80aaf333dc1245b8bbec9aa7b628d85c5e413f4b"
LABEL org.opencontainers.image.revision="fe56ee7c53ca30f25aa31cb9a025e17cd75b636e"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

2
target/executable/falco/.config.vsh.yaml
View File

@@ -317,7 +317,7 @@ build_info:
output: "target/executable/falco"
executable: "target/executable/falco/falco"
viash_version: "0.9.0-RC7"
git_commit: "80aaf333dc1245b8bbec9aa7b628d85c5e413f4b"
git_commit: "fe56ee7c53ca30f25aa31cb9a025e17cd75b636e"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

4
target/executable/falco/falco
View File

@@ -589,9 +589,9 @@ RUN echo "falco: \"$(falco -v | sed -n 's/^falco //p')\"" > /var/software_versio
LABEL org.opencontainers.image.authors="Toni Verbeiren"
LABEL org.opencontainers.image.description="Companion container for running component falco"
LABEL org.opencontainers.image.created="2024-09-13T07:16:01Z"
LABEL org.opencontainers.image.created="2024-09-13T07:20:37Z"
LABEL org.opencontainers.image.source="https://github.com/smithlabcode/falco"
LABEL org.opencontainers.image.revision="80aaf333dc1245b8bbec9aa7b628d85c5e413f4b"
LABEL org.opencontainers.image.revision="fe56ee7c53ca30f25aa31cb9a025e17cd75b636e"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

2
target/executable/fastp/.config.vsh.yaml
View File

@@ -1083,7 +1083,7 @@ build_info:
output: "target/executable/fastp"
executable: "target/executable/fastp/fastp"
viash_version: "0.9.0-RC7"
git_commit: "80aaf333dc1245b8bbec9aa7b628d85c5e413f4b"
git_commit: "fe56ee7c53ca30f25aa31cb9a025e17cd75b636e"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

4
target/executable/fastp/fastp
View File

@@ -1028,9 +1028,9 @@ RUN fastp --version 2>&1 | sed 's# #: "#;s#$#"#' > /var/software_versions.txt
LABEL org.opencontainers.image.authors="Robrecht Cannoodt"
LABEL org.opencontainers.image.description="Companion container for running component fastp"
LABEL org.opencontainers.image.created="2024-09-13T07:15:57Z"
LABEL org.opencontainers.image.created="2024-09-13T07:20:33Z"
LABEL org.opencontainers.image.source="https://github.com/OpenGene/fastp"
LABEL org.opencontainers.image.revision="80aaf333dc1245b8bbec9aa7b628d85c5e413f4b"
LABEL org.opencontainers.image.revision="fe56ee7c53ca30f25aa31cb9a025e17cd75b636e"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

2
target/executable/fastqc/.config.vsh.yaml
View File

@@ -340,7 +340,7 @@ build_info:
output: "target/executable/fastqc"
executable: "target/executable/fastqc/fastqc"
viash_version: "0.9.0-RC7"
git_commit: "80aaf333dc1245b8bbec9aa7b628d85c5e413f4b"
git_commit: "fe56ee7c53ca30f25aa31cb9a025e17cd75b636e"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

4
target/executable/fastqc/fastqc
View File

@@ -601,9 +601,9 @@ RUN echo "fastqc: $(fastqc --version | sed -n 's/^FastQC //p')" > /var/software_
LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo"
LABEL org.opencontainers.image.description="Companion container for running component fastqc"
LABEL org.opencontainers.image.created="2024-09-13T07:15:48Z"
LABEL org.opencontainers.image.created="2024-09-13T07:20:24Z"
LABEL org.opencontainers.image.source="https://github.com/s-andrews/FastQC"
LABEL org.opencontainers.image.revision="80aaf333dc1245b8bbec9aa7b628d85c5e413f4b"
LABEL org.opencontainers.image.revision="fe56ee7c53ca30f25aa31cb9a025e17cd75b636e"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

2
target/executable/featurecounts/.config.vsh.yaml
View File

@@ -645,7 +645,7 @@ build_info:
output: "target/executable/featurecounts"
executable: "target/executable/featurecounts/featurecounts"
viash_version: "0.9.0-RC7"
git_commit: "80aaf333dc1245b8bbec9aa7b628d85c5e413f4b"
git_commit: "fe56ee7c53ca30f25aa31cb9a025e17cd75b636e"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

4
target/executable/featurecounts/featurecounts
View File

@@ -754,9 +754,9 @@ RUN featureCounts -v 2>&1 | sed 's/featureCounts v\([0-9.]*\)/featureCounts: \1/
LABEL org.opencontainers.image.authors="Sai Nirmayi Yasa"
LABEL org.opencontainers.image.description="Companion container for running component featurecounts"
LABEL org.opencontainers.image.created="2024-09-13T07:15:52Z"
LABEL org.opencontainers.image.created="2024-09-13T07:20:28Z"
LABEL org.opencontainers.image.source="https://github.com/ShiLab-Bioinformatics/subread"
LABEL org.opencontainers.image.revision="80aaf333dc1245b8bbec9aa7b628d85c5e413f4b"
LABEL org.opencontainers.image.revision="fe56ee7c53ca30f25aa31cb9a025e17cd75b636e"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

2
target/executable/fq_subsample/.config.vsh.yaml
View File

@@ -190,7 +190,7 @@ build_info:
output: "target/executable/fq_subsample"
executable: "target/executable/fq_subsample/fq_subsample"
viash_version: "0.9.0-RC7"
git_commit: "80aaf333dc1245b8bbec9aa7b628d85c5e413f4b"
git_commit: "fe56ee7c53ca30f25aa31cb9a025e17cd75b636e"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

4
target/executable/fq_subsample/fq_subsample
View File

@@ -493,9 +493,9 @@ mv target/release/fq /usr/local/bin/ && \
cd / && rm -rf /fq
LABEL org.opencontainers.image.description="Companion container for running component fq_subsample"
LABEL org.opencontainers.image.created="2024-09-13T07:15:48Z"
LABEL org.opencontainers.image.created="2024-09-13T07:20:23Z"
LABEL org.opencontainers.image.source="https://github.com/stjude-rust-labs/fq"
LABEL org.opencontainers.image.revision="80aaf333dc1245b8bbec9aa7b628d85c5e413f4b"
LABEL org.opencontainers.image.revision="fe56ee7c53ca30f25aa31cb9a025e17cd75b636e"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

2
target/executable/gffread/.config.vsh.yaml
View File

@@ -685,7 +685,7 @@ build_info:
output: "target/executable/gffread"
executable: "target/executable/gffread/gffread"
viash_version: "0.9.0-RC7"
git_commit: "80aaf333dc1245b8bbec9aa7b628d85c5e413f4b"
git_commit: "fe56ee7c53ca30f25aa31cb9a025e17cd75b636e"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

4
target/executable/gffread/gffread
View File

@@ -807,9 +807,9 @@ RUN echo "gffread: \"$(gffread --version 2>&1)\"" > /var/software_versions.txt
LABEL org.opencontainers.image.authors="Emma Rousseau"
LABEL org.opencontainers.image.description="Companion container for running component gffread"
LABEL org.opencontainers.image.created="2024-09-13T07:15:40Z"
LABEL org.opencontainers.image.created="2024-09-13T07:20:15Z"
LABEL org.opencontainers.image.source="https://github.com/gpertea/gffread"
LABEL org.opencontainers.image.revision="80aaf333dc1245b8bbec9aa7b628d85c5e413f4b"
LABEL org.opencontainers.image.revision="fe56ee7c53ca30f25aa31cb9a025e17cd75b636e"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

2
target/executable/kallisto/kallisto_index/.config.vsh.yaml
View File

@@ -218,7 +218,7 @@ build_info:
output: "target/executable/kallisto/kallisto_index"
executable: "target/executable/kallisto/kallisto_index/kallisto_index"
viash_version: "0.9.0-RC7"
git_commit: "80aaf333dc1245b8bbec9aa7b628d85c5e413f4b"
git_commit: "fe56ee7c53ca30f25aa31cb9a025e17cd75b636e"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

4
target/executable/kallisto/kallisto_index/kallisto_index
View File

@@ -506,9 +506,9 @@ tar -xzf kallisto_linux-v0.50.1.tar.gz && \
mv kallisto/kallisto /usr/local/bin/
LABEL org.opencontainers.image.description="Companion container for running component kallisto kallisto_index"
LABEL org.opencontainers.image.created="2024-09-13T07:15:56Z"
LABEL org.opencontainers.image.created="2024-09-13T07:20:31Z"
LABEL org.opencontainers.image.source="https://github.com/pachterlab/kallisto"
LABEL org.opencontainers.image.revision="80aaf333dc1245b8bbec9aa7b628d85c5e413f4b"
LABEL org.opencontainers.image.revision="fe56ee7c53ca30f25aa31cb9a025e17cd75b636e"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

2
target/executable/lofreq/lofreq_call/.config.vsh.yaml
View File

@@ -507,7 +507,7 @@ build_info:
output: "target/executable/lofreq/lofreq_call"
executable: "target/executable/lofreq/lofreq_call/lofreq_call"
viash_version: "0.9.0-RC7"
git_commit: "80aaf333dc1245b8bbec9aa7b628d85c5e413f4b"
git_commit: "fe56ee7c53ca30f25aa31cb9a025e17cd75b636e"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

4
target/executable/lofreq/lofreq_call/lofreq_call
View File

@@ -656,9 +656,9 @@ echo "lofreq: $version" > /var/software_versions.txt
LABEL org.opencontainers.image.authors="Kai Waldrant"
LABEL org.opencontainers.image.description="Companion container for running component lofreq lofreq_call"
LABEL org.opencontainers.image.created="2024-09-13T07:15:52Z"
LABEL org.opencontainers.image.created="2024-09-13T07:20:27Z"
LABEL org.opencontainers.image.source="https://github.com/viash-hub/biobox"
LABEL org.opencontainers.image.revision="80aaf333dc1245b8bbec9aa7b628d85c5e413f4b"
LABEL org.opencontainers.image.revision="fe56ee7c53ca30f25aa31cb9a025e17cd75b636e"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

2
target/executable/lofreq/lofreq_indelqual/.config.vsh.yaml
View File

@@ -215,7 +215,7 @@ build_info:
output: "target/executable/lofreq/lofreq_indelqual"
executable: "target/executable/lofreq/lofreq_indelqual/lofreq_indelqual"
viash_version: "0.9.0-RC7"
git_commit: "80aaf333dc1245b8bbec9aa7b628d85c5e413f4b"
git_commit: "fe56ee7c53ca30f25aa31cb9a025e17cd75b636e"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

4
target/executable/lofreq/lofreq_indelqual/lofreq_indelqual
View File

@@ -501,9 +501,9 @@ echo "lofreq: $version" > /var/software_versions.txt
LABEL org.opencontainers.image.authors="Kai Waldrant"
LABEL org.opencontainers.image.description="Companion container for running component lofreq lofreq_indelqual"
LABEL org.opencontainers.image.created="2024-09-13T07:15:52Z"
LABEL org.opencontainers.image.created="2024-09-13T07:20:27Z"
LABEL org.opencontainers.image.source="https://github.com/viash-hub/biobox"
LABEL org.opencontainers.image.revision="80aaf333dc1245b8bbec9aa7b628d85c5e413f4b"
LABEL org.opencontainers.image.revision="fe56ee7c53ca30f25aa31cb9a025e17cd75b636e"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

2
target/executable/multiqc/.config.vsh.yaml
View File

@@ -456,7 +456,7 @@ build_info:
output: "target/executable/multiqc"
executable: "target/executable/multiqc/multiqc"
viash_version: "0.9.0-RC7"
git_commit: "80aaf333dc1245b8bbec9aa7b628d85c5e413f4b"
git_commit: "fe56ee7c53ca30f25aa31cb9a025e17cd75b636e"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

4
target/executable/multiqc/multiqc
View File

@@ -637,9 +637,9 @@ RUN multiqc --version | sed 's/multiqc, version\s\(.*\)/multiqc: "\1"/' > /var/s
LABEL org.opencontainers.image.authors="Dorien Roosen"
LABEL org.opencontainers.image.description="Companion container for running component multiqc"
LABEL org.opencontainers.image.created="2024-09-13T07:16:01Z"
LABEL org.opencontainers.image.created="2024-09-13T07:20:36Z"
LABEL org.opencontainers.image.source="https://github.com/viash-hub/biobox"
LABEL org.opencontainers.image.revision="80aaf333dc1245b8bbec9aa7b628d85c5e413f4b"
LABEL org.opencontainers.image.revision="fe56ee7c53ca30f25aa31cb9a025e17cd75b636e"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

2
target/executable/pear/.config.vsh.yaml
View File

@@ -398,7 +398,7 @@ build_info:
output: "target/executable/pear"
executable: "target/executable/pear/pear"
viash_version: "0.9.0-RC7"
git_commit: "80aaf333dc1245b8bbec9aa7b628d85c5e413f4b"
git_commit: "fe56ee7c53ca30f25aa31cb9a025e17cd75b636e"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

4
target/executable/pear/pear
View File

@@ -597,9 +597,9 @@ echo "pear: $version" > /var/software_versions.txt
LABEL org.opencontainers.image.authors="Kai Waldrant"
LABEL org.opencontainers.image.description="Companion container for running component pear"
LABEL org.opencontainers.image.created="2024-09-13T07:15:44Z"
LABEL org.opencontainers.image.created="2024-09-13T07:20:19Z"
LABEL org.opencontainers.image.source="https://github.com/tseemann/PEAR"
LABEL org.opencontainers.image.revision="80aaf333dc1245b8bbec9aa7b628d85c5e413f4b"
LABEL org.opencontainers.image.revision="fe56ee7c53ca30f25aa31cb9a025e17cd75b636e"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

2
target/executable/qualimap/qualimap_rnaseq/.config.vsh.yaml
View File

@@ -264,7 +264,7 @@ build_info:
output: "target/executable/qualimap/qualimap_rnaseq"
executable: "target/executable/qualimap/qualimap_rnaseq/qualimap_rnaseq"
viash_version: "0.9.0-RC7"
git_commit: "80aaf333dc1245b8bbec9aa7b628d85c5e413f4b"
git_commit: "fe56ee7c53ca30f25aa31cb9a025e17cd75b636e"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

4
target/executable/qualimap/qualimap_rnaseq/qualimap_rnaseq
View File

@@ -527,9 +527,9 @@ RUN echo QualiMap: $(qualimap 2>&1 | grep QualiMap | sed 's/^.*QualiMap//') > /v
LABEL org.opencontainers.image.authors="Dorien Roosen"
LABEL org.opencontainers.image.description="Companion container for running component qualimap qualimap_rnaseq"
LABEL org.opencontainers.image.created="2024-09-13T07:15:48Z"
LABEL org.opencontainers.image.created="2024-09-13T07:20:23Z"
LABEL org.opencontainers.image.source="https://bitbucket.org/kokonech/qualimap/commits/branch/master"
LABEL org.opencontainers.image.revision="80aaf333dc1245b8bbec9aa7b628d85c5e413f4b"
LABEL org.opencontainers.image.revision="fe56ee7c53ca30f25aa31cb9a025e17cd75b636e"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

2
target/executable/rsem/rsem_prepare_reference/.config.vsh.yaml
View File

@@ -416,7 +416,7 @@ build_info:
output: "target/executable/rsem/rsem_prepare_reference"
executable: "target/executable/rsem/rsem_prepare_reference/rsem_prepare_reference"
viash_version: "0.9.0-RC7"
git_commit: "80aaf333dc1245b8bbec9aa7b628d85c5e413f4b"
git_commit: "fe56ee7c53ca30f25aa31cb9a025e17cd75b636e"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

4
target/executable/rsem/rsem_prepare_reference/rsem_prepare_reference
View File

@@ -656,9 +656,9 @@ echo "HISAT2: `hisat2 --version | grep -oP 'hisat2-align-s version \K\d+\.\d+\.\
LABEL org.opencontainers.image.authors="Sai Nirmayi Yasa"
LABEL org.opencontainers.image.description="Companion container for running component rsem rsem_prepare_reference"
LABEL org.opencontainers.image.created="2024-09-13T07:15:55Z"
LABEL org.opencontainers.image.created="2024-09-13T07:20:31Z"
LABEL org.opencontainers.image.source="https://github.com/deweylab/RSEM"
LABEL org.opencontainers.image.revision="80aaf333dc1245b8bbec9aa7b628d85c5e413f4b"
LABEL org.opencontainers.image.revision="fe56ee7c53ca30f25aa31cb9a025e17cd75b636e"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

2
target/executable/salmon/salmon_index/.config.vsh.yaml
View File

@@ -277,7 +277,7 @@ build_info:
output: "target/executable/salmon/salmon_index"
executable: "target/executable/salmon/salmon_index/salmon_index"
viash_version: "0.9.0-RC7"
git_commit: "80aaf333dc1245b8bbec9aa7b628d85c5e413f4b"
git_commit: "fe56ee7c53ca30f25aa31cb9a025e17cd75b636e"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

4
target/executable/salmon/salmon_index/salmon_index
View File

@@ -546,9 +546,9 @@ RUN salmon index -v 2>&1 | sed 's/salmon \([0-9.]*\)/salmon: \1/' > /var/softwar
LABEL org.opencontainers.image.authors="Sai Nirmayi Yasa"
LABEL org.opencontainers.image.description="Companion container for running component salmon salmon_index"
LABEL org.opencontainers.image.created="2024-09-13T07:15:59Z"
LABEL org.opencontainers.image.created="2024-09-13T07:20:35Z"
LABEL org.opencontainers.image.source="https://github.com/COMBINE-lab/salmon"
LABEL org.opencontainers.image.revision="80aaf333dc1245b8bbec9aa7b628d85c5e413f4b"
LABEL org.opencontainers.image.revision="fe56ee7c53ca30f25aa31cb9a025e17cd75b636e"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

8
target/executable/salmon/salmon_quant/.config.vsh.yaml
View File

@@ -24,7 +24,7 @@ argument_groups:
- "-l"
description: "Format string describing the library.\nThe library type string consists\
\ of three parts: \n1. Relative orientation of the reads: This part is only\
\ provided if the library is paired-end, THe possible options are\n I = inward\n\
\ provided if the library is paired-end, The possible options are\n I = inward\n\
\ O = outward\n M = matching\n2. Strandedness of the library: This part specifies\
\ whether the protocol is stranded or unstranded. The options are:\n S = stranded\n\
\ U = unstranded\n3. Directionality of the reads: If the library is stranded,\
@@ -193,7 +193,7 @@ argument_groups:
- "quant.sf"
must_exist: true
create_parent: true
required: true
required: false
direction: "output"
multiple: false
multiple_sep: ";"
@@ -587,7 +587,7 @@ argument_groups:
- type: "file"
name: "--mapping_sam"
description: "Path to file that should output the selective-alignment results\
\ in SAM-compatible format. THis option must be provided while using --write_mappings"
\ in SAM-compatible format. This option must be provided while using --write_mappings"
info: null
example:
- "mappings.sam"
@@ -1173,7 +1173,7 @@ build_info:
output: "target/executable/salmon/salmon_quant"
executable: "target/executable/salmon/salmon_quant/salmon_quant"
viash_version: "0.9.0-RC7"
git_commit: "80aaf333dc1245b8bbec9aa7b628d85c5e413f4b"
git_commit: "fe56ee7c53ca30f25aa31cb9a025e17cd75b636e"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

14
target/executable/salmon/salmon_quant/salmon_quant
View File

@@ -190,7 +190,7 @@ function ViashHelp {
echo " Format string describing the library."
echo " The library type string consists of three parts:"
echo " 1. Relative orientation of the reads: This part is only provided if the"
echo " library is paired-end, THe possible options are"
echo " library is paired-end, The possible options are"
echo " I = inward"
echo " O = outward"
echo " M = matching"
@@ -258,7 +258,7 @@ function ViashHelp {
echo " Output quantification directory."
echo ""
echo " --quant_results"
echo " type: file, required parameter, output, file must exist"
echo " type: file, output, file must exist"
echo " example: quant.sf"
echo " Salmon quantification file."
echo ""
@@ -568,7 +568,7 @@ function ViashHelp {
echo " type: file, output, file must exist"
echo " example: mappings.sam"
echo " Path to file that should output the selective-alignment results in"
echo " SAM-compatible format. THis option must be provided while using"
echo " SAM-compatible format. This option must be provided while using"
echo " --write_mappings"
echo ""
echo " --write_qualities"
@@ -1168,9 +1168,9 @@ RUN salmon index -v 2>&1 | sed 's/salmon \([0-9.]*\)/salmon: \1/' > /var/softwar
LABEL org.opencontainers.image.authors="Sai Nirmayi Yasa"
LABEL org.opencontainers.image.description="Companion container for running component salmon salmon_quant"
LABEL org.opencontainers.image.created="2024-09-13T07:16:00Z"
LABEL org.opencontainers.image.created="2024-09-13T07:20:35Z"
LABEL org.opencontainers.image.source="https://github.com/COMBINE-lab/salmon"
LABEL org.opencontainers.image.revision="80aaf333dc1245b8bbec9aa7b628d85c5e413f4b"
LABEL org.opencontainers.image.revision="fe56ee7c53ca30f25aa31cb9a025e17cd75b636e"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER
@@ -2362,10 +2362,6 @@ if [ -z ${VIASH_PAR_OUTPUT+x} ]; then
ViashError '--output' is a required argument. Use "--help" to get more information on the parameters.
exit 1
fi
if [ -z ${VIASH_PAR_QUANT_RESULTS+x} ]; then
ViashError '--quant_results' is a required argument. Use "--help" to get more information on the parameters.
exit 1
fi
if [ -z ${VIASH_META_NAME+x} ]; then
ViashError 'name' is a required argument. Use "--help" to get more information on the parameters.
exit 1

2
target/executable/samtools/samtools_collate/.config.vsh.yaml
View File

@@ -264,7 +264,7 @@ build_info:
output: "target/executable/samtools/samtools_collate"
executable: "target/executable/samtools/samtools_collate/samtools_collate"
viash_version: "0.9.0-RC7"
git_commit: "80aaf333dc1245b8bbec9aa7b628d85c5e413f4b"
git_commit: "fe56ee7c53ca30f25aa31cb9a025e17cd75b636e"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

4
target/executable/samtools/samtools_collate/samtools_collate
View File

@@ -519,9 +519,9 @@ sed 's#Using ##;s# \([0-9\.]*\)$#: \1#' > /var/software_versions.txt
LABEL org.opencontainers.image.authors="Emma Rousseau"
LABEL org.opencontainers.image.description="Companion container for running component samtools samtools_collate"
LABEL org.opencontainers.image.created="2024-09-13T07:15:46Z"
LABEL org.opencontainers.image.created="2024-09-13T07:20:22Z"
LABEL org.opencontainers.image.source="https://github.com/samtools/samtools"
LABEL org.opencontainers.image.revision="80aaf333dc1245b8bbec9aa7b628d85c5e413f4b"
LABEL org.opencontainers.image.revision="fe56ee7c53ca30f25aa31cb9a025e17cd75b636e"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

2
target/executable/samtools/samtools_faidx/.config.vsh.yaml
View File

@@ -243,7 +243,7 @@ build_info:
output: "target/executable/samtools/samtools_faidx"
executable: "target/executable/samtools/samtools_faidx/samtools_faidx"
viash_version: "0.9.0-RC7"
git_commit: "80aaf333dc1245b8bbec9aa7b628d85c5e413f4b"
git_commit: "fe56ee7c53ca30f25aa31cb9a025e17cd75b636e"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

4
target/executable/samtools/samtools_faidx/samtools_faidx
View File

@@ -512,9 +512,9 @@ sed 's#Using ##;s# \([0-9\.]*\)$#: \1#' > /var/software_versions.txt
LABEL org.opencontainers.image.authors="Emma Rousseau"
LABEL org.opencontainers.image.description="Companion container for running component samtools samtools_faidx"
LABEL org.opencontainers.image.created="2024-09-13T07:15:46Z"
LABEL org.opencontainers.image.created="2024-09-13T07:20:21Z"
LABEL org.opencontainers.image.source="https://github.com/samtools/samtools"
LABEL org.opencontainers.image.revision="80aaf333dc1245b8bbec9aa7b628d85c5e413f4b"
LABEL org.opencontainers.image.revision="fe56ee7c53ca30f25aa31cb9a025e17cd75b636e"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

2
target/executable/samtools/samtools_fasta/.config.vsh.yaml
View File

@@ -433,7 +433,7 @@ build_info:
output: "target/executable/samtools/samtools_fasta"
executable: "target/executable/samtools/samtools_fasta/samtools_fasta"
viash_version: "0.9.0-RC7"
git_commit: "80aaf333dc1245b8bbec9aa7b628d85c5e413f4b"
git_commit: "fe56ee7c53ca30f25aa31cb9a025e17cd75b636e"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

4
target/executable/samtools/samtools_fasta/samtools_fasta
View File

@@ -625,9 +625,9 @@ sed 's#Using ##;s# \([0-9\.]*\)$#: \1#' > /var/software_versions.txt
LABEL org.opencontainers.image.authors="Emma Rousseau"
LABEL org.opencontainers.image.description="Companion container for running component samtools samtools_fasta"
LABEL org.opencontainers.image.created="2024-09-13T07:15:47Z"
LABEL org.opencontainers.image.created="2024-09-13T07:20:22Z"
LABEL org.opencontainers.image.source="https://github.com/samtools/samtools"
LABEL org.opencontainers.image.revision="80aaf333dc1245b8bbec9aa7b628d85c5e413f4b"
LABEL org.opencontainers.image.revision="fe56ee7c53ca30f25aa31cb9a025e17cd75b636e"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

2
target/executable/samtools/samtools_fastq/.config.vsh.yaml
View File

@@ -433,7 +433,7 @@ build_info:
output: "target/executable/samtools/samtools_fastq"
executable: "target/executable/samtools/samtools_fastq/samtools_fastq"
viash_version: "0.9.0-RC7"
git_commit: "80aaf333dc1245b8bbec9aa7b628d85c5e413f4b"
git_commit: "fe56ee7c53ca30f25aa31cb9a025e17cd75b636e"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

4
target/executable/samtools/samtools_fastq/samtools_fastq
View File

@@ -626,9 +626,9 @@ sed 's#Using ##;s# \([0-9\.]*\)$#: \1#' > /var/software_versions.txt
LABEL org.opencontainers.image.authors="Emma Rousseau"
LABEL org.opencontainers.image.description="Companion container for running component samtools samtools_fastq"
LABEL org.opencontainers.image.created="2024-09-13T07:15:46Z"
LABEL org.opencontainers.image.created="2024-09-13T07:20:21Z"
LABEL org.opencontainers.image.source="https://github.com/samtools/samtools"
LABEL org.opencontainers.image.revision="80aaf333dc1245b8bbec9aa7b628d85c5e413f4b"
LABEL org.opencontainers.image.revision="fe56ee7c53ca30f25aa31cb9a025e17cd75b636e"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

2
target/executable/samtools/samtools_flagstat/.config.vsh.yaml
View File

@@ -173,7 +173,7 @@ build_info:
output: "target/executable/samtools/samtools_flagstat"
executable: "target/executable/samtools/samtools_flagstat/samtools_flagstat"
viash_version: "0.9.0-RC7"
git_commit: "80aaf333dc1245b8bbec9aa7b628d85c5e413f4b"
git_commit: "fe56ee7c53ca30f25aa31cb9a025e17cd75b636e"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

4
target/executable/samtools/samtools_flagstat/samtools_flagstat
View File

@@ -474,9 +474,9 @@ sed 's#Using ##;s# \([0-9\.]*\)$#: \1#' > /var/software_versions.txt
LABEL org.opencontainers.image.authors="Emma Rousseau"
LABEL org.opencontainers.image.description="Companion container for running component samtools samtools_flagstat"
LABEL org.opencontainers.image.created="2024-09-13T07:15:45Z"
LABEL org.opencontainers.image.created="2024-09-13T07:20:21Z"
LABEL org.opencontainers.image.source="https://github.com/samtools/samtools"
LABEL org.opencontainers.image.revision="80aaf333dc1245b8bbec9aa7b628d85c5e413f4b"
LABEL org.opencontainers.image.revision="fe56ee7c53ca30f25aa31cb9a025e17cd75b636e"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

2
target/executable/samtools/samtools_idxstats/.config.vsh.yaml
View File

@@ -183,7 +183,7 @@ build_info:
output: "target/executable/samtools/samtools_idxstats"
executable: "target/executable/samtools/samtools_idxstats/samtools_idxstats"
viash_version: "0.9.0-RC7"
git_commit: "80aaf333dc1245b8bbec9aa7b628d85c5e413f4b"
git_commit: "fe56ee7c53ca30f25aa31cb9a025e17cd75b636e"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

4
target/executable/samtools/samtools_idxstats/samtools_idxstats
View File

@@ -478,9 +478,9 @@ sed 's#Using ##;s# \([0-9\.]*\)$#: \1#' > /var/software_versions.txt
LABEL org.opencontainers.image.authors="Emma Rousseau"
LABEL org.opencontainers.image.description="Companion container for running component samtools samtools_idxstats"
LABEL org.opencontainers.image.created="2024-09-13T07:15:45Z"
LABEL org.opencontainers.image.created="2024-09-13T07:20:20Z"
LABEL org.opencontainers.image.source="https://github.com/samtools/samtools"
LABEL org.opencontainers.image.revision="80aaf333dc1245b8bbec9aa7b628d85c5e413f4b"
LABEL org.opencontainers.image.revision="fe56ee7c53ca30f25aa31cb9a025e17cd75b636e"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

2
target/executable/samtools/samtools_index/.config.vsh.yaml
View File

@@ -189,7 +189,7 @@ build_info:
output: "target/executable/samtools/samtools_index"
executable: "target/executable/samtools/samtools_index/samtools_index"
viash_version: "0.9.0-RC7"
git_commit: "80aaf333dc1245b8bbec9aa7b628d85c5e413f4b"
git_commit: "fe56ee7c53ca30f25aa31cb9a025e17cd75b636e"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

4
target/executable/samtools/samtools_index/samtools_index
View File

@@ -485,9 +485,9 @@ sed 's#Using ##;s# \([0-9\.]*\)$#: \1#' > /var/software_versions.txt
LABEL org.opencontainers.image.authors="Emma Rousseau"
LABEL org.opencontainers.image.description="Companion container for running component samtools samtools_index"
LABEL org.opencontainers.image.created="2024-09-13T07:15:44Z"
LABEL org.opencontainers.image.created="2024-09-13T07:20:19Z"
LABEL org.opencontainers.image.source="https://github.com/samtools/samtools"
LABEL org.opencontainers.image.revision="80aaf333dc1245b8bbec9aa7b628d85c5e413f4b"
LABEL org.opencontainers.image.revision="fe56ee7c53ca30f25aa31cb9a025e17cd75b636e"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

2
target/executable/samtools/samtools_sort/.config.vsh.yaml
View File

@@ -332,7 +332,7 @@ build_info:
output: "target/executable/samtools/samtools_sort"
executable: "target/executable/samtools/samtools_sort/samtools_sort"
viash_version: "0.9.0-RC7"
git_commit: "80aaf333dc1245b8bbec9aa7b628d85c5e413f4b"
git_commit: "fe56ee7c53ca30f25aa31cb9a025e17cd75b636e"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

4
target/executable/samtools/samtools_sort/samtools_sort
View File

@@ -556,9 +556,9 @@ sed 's#Using ##;s# \([0-9\.]*\)$#: \1#' > /var/software_versions.txt
LABEL org.opencontainers.image.authors="Emma Rousseau"
LABEL org.opencontainers.image.description="Companion container for running component samtools samtools_sort"
LABEL org.opencontainers.image.created="2024-09-13T07:15:47Z"
LABEL org.opencontainers.image.created="2024-09-13T07:20:22Z"
LABEL org.opencontainers.image.source="https://github.com/samtools/samtools"
LABEL org.opencontainers.image.revision="80aaf333dc1245b8bbec9aa7b628d85c5e413f4b"
LABEL org.opencontainers.image.revision="fe56ee7c53ca30f25aa31cb9a025e17cd75b636e"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

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