diff --git a/CHANGELOG.md b/CHANGELOG.md
index 294ebe09..961f8f46 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -16,6 +16,8 @@
 
 * Add authors to package config and update author information (PR #180).
 
+* `fastqc`: add `--outdir` argument (PR #181).
+
 # biobox 0.3.1
 
 ## NEW FUNCTIONALITY
diff --git a/src/fastqc/config.vsh.yaml b/src/fastqc/config.vsh.yaml
index 75b16f36..6976ca80 100644
--- a/src/fastqc/config.vsh.yaml
+++ b/src/fastqc/config.vsh.yaml
@@ -28,6 +28,13 @@ argument_groups:
       At least one of the output options (--html, --zip, --summary, --data) must be used.
     arguments:
 
+      - name: --outdir
+        type: file
+        direction: output
+        description: |
+          Output directory where the results will be saved.
+        example: results
+
       - name: --html
         type: file
         direction: output
diff --git a/src/fastqc/script.sh b/src/fastqc/script.sh
index 5cf55868..d35e15ae 100644
--- a/src/fastqc/script.sh
+++ b/src/fastqc/script.sh
@@ -7,8 +7,8 @@
 set -eo pipefail
 
 # Check if both outputs are empty, at least one must be passed.
-if [[ -z "$par_html" ]] && [[ -z "$par_zip" ]] && [[ -z "$par_summary" ]] && [[ -z "$par_data" ]]; then
-  echo "Error: At least one of the output arguments (--html, --zip, --summary, and --data) must be passed."
+if [[ -z "$par_outdir" ]] && [[ -z "$par_html" ]] && [[ -z "$par_zip" ]] && [[ -z "$par_summary" ]] && [[ -z "$par_data" ]]; then
+  echo "Error: At least one of the output arguments (--outdir, --html, --zip, --summary, and --data) must be passed."
   exit 1
 fi
 
@@ -34,6 +34,16 @@ function clean_up {
 }
 trap clean_up EXIT
 
+# Set output directory
+if [[ -n "$par_outdir" ]]; then
+  if [[ ! -d "$par_outdir" ]]; then
+    mkdir -p "$par_outdir"
+  fi
+  output_dir="$par_outdir"
+else
+  output_dir="$tmpdir"
+fi
+
 # Create input array 
 IFS=";" read -ra input <<< $par_input
 
@@ -53,34 +63,50 @@ fastqc \
   ${par_quiet:+--quiet} \
   ${meta_cpus:+--threads "$meta_cpus"} \
   ${meta_temp_dir:+--dir "$meta_temp_dir"} \
-  --outdir "${tmpdir}" \
+  --outdir "${output_dir}" \
   "${input[@]}"
  
+
 # Move output files
 for file in "${input[@]}"; do
-  # Removes everthing after the first dot of the basename
+  # Removes everything after the first dot of the basename
   sample_name=$(basename "${file}" | sed 's/\..*$//')
   if [[ -n "$par_html" ]]; then
-    input_html="${tmpdir}/${sample_name}_fastqc.html"
-    html_file="${par_html//\*/$sample_name}"
-    mv "$input_html" "$html_file"
+    input_html="${output_dir}/${sample_name}_fastqc.html"
+    if [[ ! -f "$input_html" ]]; then
+      echo "WARNING: HTML file '$input_html' does not exist"
+    else
+      html_file="${par_html//\*/$sample_name}"
+      cp "$input_html" "$html_file"
+    fi
   fi
   if [[ -n "$par_zip" ]]; then
-    input_zip="${tmpdir}/${sample_name}_fastqc.zip"
-    zip_file="${par_zip//\*/$sample_name}"
-    mv "$input_zip" "$zip_file"
+    input_zip="${output_dir}/${sample_name}_fastqc.zip"
+    if [[ ! -f "$input_zip" ]]; then
+      echo "WARNING: ZIP file '$input_zip' does not exist"
+    else
+      zip_file="${par_zip//\*/$sample_name}"
+      cp "$input_zip" "$zip_file"
+    fi
   fi
   if [[ -n "$par_summary" ]]; then
-    summary_file="${tmpdir}/${sample_name}_fastqc/summary.txt"
-    new_summary="${par_summary//\*/$sample_name}"
-    mv "$summary_file" "$new_summary"
+    summary_file="${output_dir}/${sample_name}_fastqc/summary.txt"
+    if [[ ! -f "$summary_file" ]]; then
+      echo "WARNING: Summary file '$summary_file' does not exist"
+    else
+      new_summary="${par_summary//\*/$sample_name}"
+      cp "$summary_file" "$new_summary"
+    fi
   fi
   if [[ -n "$par_data" ]]; then
-    data_file="${tmpdir}/${sample_name}_fastqc/fastqc_data.txt"
-    new_data="${par_data//\*/$sample_name}"
-    mv "$data_file" "$new_data"
+    data_file="${output_dir}/${sample_name}_fastqc/fastqc_data.txt"
+    if [[ ! -f "$data_file" ]]; then
+      echo "WARNING: Data file '$data_file' does not exist"
+    else
+      new_data="${par_data//\*/$sample_name}"
+      cp "$data_file" "$new_data"
+    fi
   fi
-  # Remove the extracted directory
-  rm -r "${tmpdir}/${sample_name}_fastqc"
 done
 
+
diff --git a/src/fastqc/test.sh b/src/fastqc/test.sh
index 8c581ac8..6b5fc165 100644
--- a/src/fastqc/test.sh
+++ b/src/fastqc/test.sh
@@ -231,5 +231,39 @@ echo "- test succeeded -"
 
 popd > /dev/null
 
+# Test 6: Run fastqc with multiple inputs and outdir argument
+mkdir "$TMPDIR/test6" && pushd "$TMPDIR/test6" > /dev/null
+
+echo "-> Run Test6: two inputs, outdir argument"
+"$meta_executable" \
+  --input "../input_1.fq" \
+  --input "../input_2.fq" \
+  --outdir "results" \
+  --quiet
+
+ls -l
+ls -l results
+ls -l results/input_1_fastqc.html
+
+# File 1
+assert_file_exists "results/input_1_fastqc.html"
+assert_file_exists "results/input_1_fastqc.zip"
+assert_file_not_empty "results/input_1_fastqc.html"
+assert_file_not_empty "results/input_1_fastqc.zip"
+assert_file_exists "results/input_1_fastqc/fastqc_data.txt"
+assert_file_exists "results/input_1_fastqc/summary.txt"
+assert_identical_content "results/input_1_fastqc/summary.txt" "../expected_summary.txt"
+# File 2
+assert_file_exists "results/input_2_fastqc.html"
+assert_file_exists "results/input_2_fastqc.zip"
+assert_file_not_empty "results/input_2_fastqc.html"
+assert_file_not_empty "results/input_2_fastqc.zip"
+assert_file_exists "results/input_1_fastqc/fastqc_data.txt"
+assert_file_exists "results/input_2_fastqc/summary.txt"
+assert_identical_content "results/input_2_fastqc/summary.txt" "../expected_summary2.txt"
+echo "- test succeeded -"
+
+popd > /dev/null
+
 echo "All tests succeeded!"
 exit 0
diff --git a/target/executable/agat/agat_convert_bed2gff/.config.vsh.yaml b/target/executable/agat/agat_convert_bed2gff/.config.vsh.yaml
index f7477a7a..22872f6a 100644
--- a/target/executable/agat/agat_convert_bed2gff/.config.vsh.yaml
+++ b/target/executable/agat/agat_convert_bed2gff/.config.vsh.yaml
@@ -233,9 +233,9 @@ build_info:
   output: "target/executable/agat/agat_convert_bed2gff"
   executable: "target/executable/agat/agat_convert_bed2gff/agat_convert_bed2gff"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/executable/agat/agat_convert_bed2gff/agat_convert_bed2gff b/target/executable/agat/agat_convert_bed2gff/agat_convert_bed2gff
index 0671634f..b07fd8c3 100755
--- a/target/executable/agat/agat_convert_bed2gff/agat_convert_bed2gff
+++ b/target/executable/agat/agat_convert_bed2gff/agat_convert_bed2gff
@@ -452,9 +452,9 @@ RUN agat --version | sed 's/AGAT\s\(.*\)/agat: "\1"/' > /var/software_versions.t
 
 LABEL org.opencontainers.image.authors="Leïla Paquay"
 LABEL org.opencontainers.image.description="Companion container for running component agat agat_convert_bed2gff"
-LABEL org.opencontainers.image.created="2025-06-23T06:29:25Z"
+LABEL org.opencontainers.image.created="2025-06-24T10:40:42Z"
 LABEL org.opencontainers.image.source="https://github.com/NBISweden/AGAT"
-LABEL org.opencontainers.image.revision="219ba1d3d0d7fbc66393595534bb6c333b08b238"
+LABEL org.opencontainers.image.revision="f91567d467e6be79a5f71b24a54864ab13bdd278"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER
diff --git a/target/executable/agat/agat_convert_embl2gff/.config.vsh.yaml b/target/executable/agat/agat_convert_embl2gff/.config.vsh.yaml
index 4278eb70..e1930baa 100644
--- a/target/executable/agat/agat_convert_embl2gff/.config.vsh.yaml
+++ b/target/executable/agat/agat_convert_embl2gff/.config.vsh.yaml
@@ -223,9 +223,9 @@ build_info:
   output: "target/executable/agat/agat_convert_embl2gff"
   executable: "target/executable/agat/agat_convert_embl2gff/agat_convert_embl2gff"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/executable/agat/agat_convert_embl2gff/agat_convert_embl2gff b/target/executable/agat/agat_convert_embl2gff/agat_convert_embl2gff
index fc7e72d8..98535b30 100755
--- a/target/executable/agat/agat_convert_embl2gff/agat_convert_embl2gff
+++ b/target/executable/agat/agat_convert_embl2gff/agat_convert_embl2gff
@@ -452,9 +452,9 @@ RUN agat --version | sed 's/AGAT\s\(.*\)/agat: "\1"/' > /var/software_versions.t
 
 LABEL org.opencontainers.image.authors="Leïla Paquay"
 LABEL org.opencontainers.image.description="Companion container for running component agat agat_convert_embl2gff"
-LABEL org.opencontainers.image.created="2025-06-23T06:29:34Z"
+LABEL org.opencontainers.image.created="2025-06-24T10:40:51Z"
 LABEL org.opencontainers.image.source="https://github.com/NBISweden/AGAT"
-LABEL org.opencontainers.image.revision="219ba1d3d0d7fbc66393595534bb6c333b08b238"
+LABEL org.opencontainers.image.revision="f91567d467e6be79a5f71b24a54864ab13bdd278"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER
diff --git a/target/executable/agat/agat_convert_genscan2gff/.config.vsh.yaml b/target/executable/agat/agat_convert_genscan2gff/.config.vsh.yaml
index 9dc9cc03..75ddd01d 100644
--- a/target/executable/agat/agat_convert_genscan2gff/.config.vsh.yaml
+++ b/target/executable/agat/agat_convert_genscan2gff/.config.vsh.yaml
@@ -228,9 +228,9 @@ build_info:
   output: "target/executable/agat/agat_convert_genscan2gff"
   executable: "target/executable/agat/agat_convert_genscan2gff/agat_convert_genscan2gff"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/executable/agat/agat_convert_genscan2gff/agat_convert_genscan2gff b/target/executable/agat/agat_convert_genscan2gff/agat_convert_genscan2gff
index a1d6a2e3..05d71ab7 100755
--- a/target/executable/agat/agat_convert_genscan2gff/agat_convert_genscan2gff
+++ b/target/executable/agat/agat_convert_genscan2gff/agat_convert_genscan2gff
@@ -452,9 +452,9 @@ RUN agat --version | sed 's/AGAT\s\(.*\)/agat: "\1"/' > /var/software_versions.t
 
 LABEL org.opencontainers.image.authors="Leïla Paquay"
 LABEL org.opencontainers.image.description="Companion container for running component agat agat_convert_genscan2gff"
-LABEL org.opencontainers.image.created="2025-06-23T06:29:25Z"
+LABEL org.opencontainers.image.created="2025-06-24T10:40:42Z"
 LABEL org.opencontainers.image.source="https://github.com/NBISweden/AGAT"
-LABEL org.opencontainers.image.revision="219ba1d3d0d7fbc66393595534bb6c333b08b238"
+LABEL org.opencontainers.image.revision="f91567d467e6be79a5f71b24a54864ab13bdd278"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER
diff --git a/target/executable/agat/agat_convert_mfannot2gff/.config.vsh.yaml b/target/executable/agat/agat_convert_mfannot2gff/.config.vsh.yaml
index e5c9b315..c10b03b7 100644
--- a/target/executable/agat/agat_convert_mfannot2gff/.config.vsh.yaml
+++ b/target/executable/agat/agat_convert_mfannot2gff/.config.vsh.yaml
@@ -184,9 +184,9 @@ build_info:
   output: "target/executable/agat/agat_convert_mfannot2gff"
   executable: "target/executable/agat/agat_convert_mfannot2gff/agat_convert_mfannot2gff"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/executable/agat/agat_convert_mfannot2gff/agat_convert_mfannot2gff b/target/executable/agat/agat_convert_mfannot2gff/agat_convert_mfannot2gff
index 36a2a525..31f89505 100755
--- a/target/executable/agat/agat_convert_mfannot2gff/agat_convert_mfannot2gff
+++ b/target/executable/agat/agat_convert_mfannot2gff/agat_convert_mfannot2gff
@@ -452,9 +452,9 @@ RUN agat --version | sed 's/AGAT\s\(.*\)/agat: "\1"/' > /var/software_versions.t
 
 LABEL org.opencontainers.image.authors="Leïla Paquay"
 LABEL org.opencontainers.image.description="Companion container for running component agat agat_convert_mfannot2gff"
-LABEL org.opencontainers.image.created="2025-06-23T06:29:24Z"
+LABEL org.opencontainers.image.created="2025-06-24T10:40:41Z"
 LABEL org.opencontainers.image.source="https://github.com/NBISweden/AGAT"
-LABEL org.opencontainers.image.revision="219ba1d3d0d7fbc66393595534bb6c333b08b238"
+LABEL org.opencontainers.image.revision="f91567d467e6be79a5f71b24a54864ab13bdd278"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER
diff --git a/target/executable/agat/agat_convert_sp_gff2gtf/.config.vsh.yaml b/target/executable/agat/agat_convert_sp_gff2gtf/.config.vsh.yaml
index 9b9403ba..7a6cc601 100644
--- a/target/executable/agat/agat_convert_sp_gff2gtf/.config.vsh.yaml
+++ b/target/executable/agat/agat_convert_sp_gff2gtf/.config.vsh.yaml
@@ -226,9 +226,9 @@ build_info:
   output: "target/executable/agat/agat_convert_sp_gff2gtf"
   executable: "target/executable/agat/agat_convert_sp_gff2gtf/agat_convert_sp_gff2gtf"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/executable/agat/agat_convert_sp_gff2gtf/agat_convert_sp_gff2gtf b/target/executable/agat/agat_convert_sp_gff2gtf/agat_convert_sp_gff2gtf
index ff656322..c5bdd641 100755
--- a/target/executable/agat/agat_convert_sp_gff2gtf/agat_convert_sp_gff2gtf
+++ b/target/executable/agat/agat_convert_sp_gff2gtf/agat_convert_sp_gff2gtf
@@ -452,9 +452,9 @@ RUN agat --version | sed 's/AGAT\s\(.*\)/agat: "\1"/' > /var/software_versions.t
 
 LABEL org.opencontainers.image.authors="Leïla Paquay"
 LABEL org.opencontainers.image.description="Companion container for running component agat agat_convert_sp_gff2gtf"
-LABEL org.opencontainers.image.created="2025-06-23T06:29:24Z"
+LABEL org.opencontainers.image.created="2025-06-24T10:40:41Z"
 LABEL org.opencontainers.image.source="https://github.com/NBISweden/AGAT"
-LABEL org.opencontainers.image.revision="219ba1d3d0d7fbc66393595534bb6c333b08b238"
+LABEL org.opencontainers.image.revision="f91567d467e6be79a5f71b24a54864ab13bdd278"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER
diff --git a/target/executable/agat/agat_convert_sp_gff2tsv/.config.vsh.yaml b/target/executable/agat/agat_convert_sp_gff2tsv/.config.vsh.yaml
index e07dd148..cd061523 100644
--- a/target/executable/agat/agat_convert_sp_gff2tsv/.config.vsh.yaml
+++ b/target/executable/agat/agat_convert_sp_gff2tsv/.config.vsh.yaml
@@ -186,9 +186,9 @@ build_info:
   output: "target/executable/agat/agat_convert_sp_gff2tsv"
   executable: "target/executable/agat/agat_convert_sp_gff2tsv/agat_convert_sp_gff2tsv"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/executable/agat/agat_convert_sp_gff2tsv/agat_convert_sp_gff2tsv b/target/executable/agat/agat_convert_sp_gff2tsv/agat_convert_sp_gff2tsv
index e0f38a2b..011ac750 100755
--- a/target/executable/agat/agat_convert_sp_gff2tsv/agat_convert_sp_gff2tsv
+++ b/target/executable/agat/agat_convert_sp_gff2tsv/agat_convert_sp_gff2tsv
@@ -452,9 +452,9 @@ RUN agat --version | sed 's/AGAT\s\(.*\)/agat: "\1"/' > /var/software_versions.t
 
 LABEL org.opencontainers.image.authors="Leïla Paquay"
 LABEL org.opencontainers.image.description="Companion container for running component agat agat_convert_sp_gff2tsv"
-LABEL org.opencontainers.image.created="2025-06-23T06:29:35Z"
+LABEL org.opencontainers.image.created="2025-06-24T10:40:52Z"
 LABEL org.opencontainers.image.source="https://github.com/NBISweden/AGAT"
-LABEL org.opencontainers.image.revision="219ba1d3d0d7fbc66393595534bb6c333b08b238"
+LABEL org.opencontainers.image.revision="f91567d467e6be79a5f71b24a54864ab13bdd278"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER
diff --git a/target/executable/agat/agat_convert_sp_gxf2gxf/.config.vsh.yaml b/target/executable/agat/agat_convert_sp_gxf2gxf/.config.vsh.yaml
index d9266bbc..5fa2727a 100644
--- a/target/executable/agat/agat_convert_sp_gxf2gxf/.config.vsh.yaml
+++ b/target/executable/agat/agat_convert_sp_gxf2gxf/.config.vsh.yaml
@@ -193,9 +193,9 @@ build_info:
   output: "target/executable/agat/agat_convert_sp_gxf2gxf"
   executable: "target/executable/agat/agat_convert_sp_gxf2gxf/agat_convert_sp_gxf2gxf"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/executable/agat/agat_convert_sp_gxf2gxf/agat_convert_sp_gxf2gxf b/target/executable/agat/agat_convert_sp_gxf2gxf/agat_convert_sp_gxf2gxf
index 9dadcc08..68fd46bd 100755
--- a/target/executable/agat/agat_convert_sp_gxf2gxf/agat_convert_sp_gxf2gxf
+++ b/target/executable/agat/agat_convert_sp_gxf2gxf/agat_convert_sp_gxf2gxf
@@ -452,9 +452,9 @@ RUN agat --version | sed 's/AGAT\s\(.*\)/agat: "\1"/' > /var/software_versions.t
 
 LABEL org.opencontainers.image.authors="Leïla Paquay"
 LABEL org.opencontainers.image.description="Companion container for running component agat agat_convert_sp_gxf2gxf"
-LABEL org.opencontainers.image.created="2025-06-23T06:29:34Z"
+LABEL org.opencontainers.image.created="2025-06-24T10:40:51Z"
 LABEL org.opencontainers.image.source="https://github.com/NBISweden/AGAT"
-LABEL org.opencontainers.image.revision="219ba1d3d0d7fbc66393595534bb6c333b08b238"
+LABEL org.opencontainers.image.revision="f91567d467e6be79a5f71b24a54864ab13bdd278"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER
diff --git a/target/executable/agat/agat_sp_add_introns/.config.vsh.yaml b/target/executable/agat/agat_sp_add_introns/.config.vsh.yaml
index a8a1a368..f89c7cf7 100644
--- a/target/executable/agat/agat_sp_add_introns/.config.vsh.yaml
+++ b/target/executable/agat/agat_sp_add_introns/.config.vsh.yaml
@@ -184,9 +184,9 @@ build_info:
   output: "target/executable/agat/agat_sp_add_introns"
   executable: "target/executable/agat/agat_sp_add_introns/agat_sp_add_introns"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/executable/agat/agat_sp_add_introns/agat_sp_add_introns b/target/executable/agat/agat_sp_add_introns/agat_sp_add_introns
index c96fc390..eef9be8d 100755
--- a/target/executable/agat/agat_sp_add_introns/agat_sp_add_introns
+++ b/target/executable/agat/agat_sp_add_introns/agat_sp_add_introns
@@ -452,9 +452,9 @@ RUN agat --version | sed 's/AGAT\s\(.*\)/agat: "\1"/' > /var/software_versions.t
 
 LABEL org.opencontainers.image.authors="Leïla Paquay"
 LABEL org.opencontainers.image.description="Companion container for running component agat agat_sp_add_introns"
-LABEL org.opencontainers.image.created="2025-06-23T06:29:34Z"
+LABEL org.opencontainers.image.created="2025-06-24T10:40:51Z"
 LABEL org.opencontainers.image.source="https://github.com/NBISweden/AGAT"
-LABEL org.opencontainers.image.revision="219ba1d3d0d7fbc66393595534bb6c333b08b238"
+LABEL org.opencontainers.image.revision="f91567d467e6be79a5f71b24a54864ab13bdd278"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER
diff --git a/target/executable/agat/agat_sp_filter_feature_from_kill_list/.config.vsh.yaml b/target/executable/agat/agat_sp_filter_feature_from_kill_list/.config.vsh.yaml
index 9c5e2603..be84946a 100644
--- a/target/executable/agat/agat_sp_filter_feature_from_kill_list/.config.vsh.yaml
+++ b/target/executable/agat/agat_sp_filter_feature_from_kill_list/.config.vsh.yaml
@@ -234,9 +234,9 @@ build_info:
   output: "target/executable/agat/agat_sp_filter_feature_from_kill_list"
   executable: "target/executable/agat/agat_sp_filter_feature_from_kill_list/agat_sp_filter_feature_from_kill_list"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/executable/agat/agat_sp_filter_feature_from_kill_list/agat_sp_filter_feature_from_kill_list b/target/executable/agat/agat_sp_filter_feature_from_kill_list/agat_sp_filter_feature_from_kill_list
index aafbf0c1..0f24a89c 100755
--- a/target/executable/agat/agat_sp_filter_feature_from_kill_list/agat_sp_filter_feature_from_kill_list
+++ b/target/executable/agat/agat_sp_filter_feature_from_kill_list/agat_sp_filter_feature_from_kill_list
@@ -452,9 +452,9 @@ RUN agat --version | sed 's/AGAT\s\(.*\)/agat: "\1"/' > /var/software_versions.t
 
 LABEL org.opencontainers.image.authors="Leïla Paquay"
 LABEL org.opencontainers.image.description="Companion container for running component agat agat_sp_filter_feature_from_kill_list"
-LABEL org.opencontainers.image.created="2025-06-23T06:29:23Z"
+LABEL org.opencontainers.image.created="2025-06-24T10:40:40Z"
 LABEL org.opencontainers.image.source="https://github.com/NBISweden/AGAT"
-LABEL org.opencontainers.image.revision="219ba1d3d0d7fbc66393595534bb6c333b08b238"
+LABEL org.opencontainers.image.revision="f91567d467e6be79a5f71b24a54864ab13bdd278"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER
diff --git a/target/executable/agat/agat_sp_merge_annotations/.config.vsh.yaml b/target/executable/agat/agat_sp_merge_annotations/.config.vsh.yaml
index e4401cd8..4d6b5789 100644
--- a/target/executable/agat/agat_sp_merge_annotations/.config.vsh.yaml
+++ b/target/executable/agat/agat_sp_merge_annotations/.config.vsh.yaml
@@ -182,9 +182,9 @@ build_info:
   output: "target/executable/agat/agat_sp_merge_annotations"
   executable: "target/executable/agat/agat_sp_merge_annotations/agat_sp_merge_annotations"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/executable/agat/agat_sp_merge_annotations/agat_sp_merge_annotations b/target/executable/agat/agat_sp_merge_annotations/agat_sp_merge_annotations
index 637607c7..c6a90ed9 100755
--- a/target/executable/agat/agat_sp_merge_annotations/agat_sp_merge_annotations
+++ b/target/executable/agat/agat_sp_merge_annotations/agat_sp_merge_annotations
@@ -452,9 +452,9 @@ RUN agat --version | sed 's/AGAT\s\(.*\)/agat: "\1"/' > /var/software_versions.t
 
 LABEL org.opencontainers.image.authors="Leïla Paquay"
 LABEL org.opencontainers.image.description="Companion container for running component agat agat_sp_merge_annotations"
-LABEL org.opencontainers.image.created="2025-06-23T06:29:25Z"
+LABEL org.opencontainers.image.created="2025-06-24T10:40:42Z"
 LABEL org.opencontainers.image.source="https://github.com/NBISweden/AGAT"
-LABEL org.opencontainers.image.revision="219ba1d3d0d7fbc66393595534bb6c333b08b238"
+LABEL org.opencontainers.image.revision="f91567d467e6be79a5f71b24a54864ab13bdd278"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER
diff --git a/target/executable/agat/agat_sp_statistics/.config.vsh.yaml b/target/executable/agat/agat_sp_statistics/.config.vsh.yaml
index 5e4aee4b..c3557c56 100644
--- a/target/executable/agat/agat_sp_statistics/.config.vsh.yaml
+++ b/target/executable/agat/agat_sp_statistics/.config.vsh.yaml
@@ -229,9 +229,9 @@ build_info:
   output: "target/executable/agat/agat_sp_statistics"
   executable: "target/executable/agat/agat_sp_statistics/agat_sp_statistics"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/executable/agat/agat_sp_statistics/agat_sp_statistics b/target/executable/agat/agat_sp_statistics/agat_sp_statistics
index 351ba3b1..b6cd1838 100755
--- a/target/executable/agat/agat_sp_statistics/agat_sp_statistics
+++ b/target/executable/agat/agat_sp_statistics/agat_sp_statistics
@@ -452,9 +452,9 @@ RUN agat --version | sed 's/.*v\.//; s/\s.*//' | sed 's/^/AGAT: /' > /var/softwa
 
 LABEL org.opencontainers.image.authors="Leïla Paquay"
 LABEL org.opencontainers.image.description="Companion container for running component agat agat_sp_statistics"
-LABEL org.opencontainers.image.created="2025-06-23T06:29:25Z"
+LABEL org.opencontainers.image.created="2025-06-24T10:40:43Z"
 LABEL org.opencontainers.image.source="https://github.com/NBISweden/AGAT"
-LABEL org.opencontainers.image.revision="219ba1d3d0d7fbc66393595534bb6c333b08b238"
+LABEL org.opencontainers.image.revision="f91567d467e6be79a5f71b24a54864ab13bdd278"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER
diff --git a/target/executable/agat/agat_sq_stat_basic/.config.vsh.yaml b/target/executable/agat/agat_sq_stat_basic/.config.vsh.yaml
index 50a55751..be3f4bbf 100644
--- a/target/executable/agat/agat_sq_stat_basic/.config.vsh.yaml
+++ b/target/executable/agat/agat_sq_stat_basic/.config.vsh.yaml
@@ -225,9 +225,9 @@ build_info:
   output: "target/executable/agat/agat_sq_stat_basic"
   executable: "target/executable/agat/agat_sq_stat_basic/agat_sq_stat_basic"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/executable/agat/agat_sq_stat_basic/agat_sq_stat_basic b/target/executable/agat/agat_sq_stat_basic/agat_sq_stat_basic
index 2b1ebb00..1b7a7e7c 100755
--- a/target/executable/agat/agat_sq_stat_basic/agat_sq_stat_basic
+++ b/target/executable/agat/agat_sq_stat_basic/agat_sq_stat_basic
@@ -452,9 +452,9 @@ RUN agat --version | sed 's/AGAT\s\(.*\)/agat: "\1"/' > /var/software_versions.t
 
 LABEL org.opencontainers.image.authors="Leïla Paquay"
 LABEL org.opencontainers.image.description="Companion container for running component agat agat_sq_stat_basic"
-LABEL org.opencontainers.image.created="2025-06-23T06:29:24Z"
+LABEL org.opencontainers.image.created="2025-06-24T10:40:41Z"
 LABEL org.opencontainers.image.source="https://github.com/NBISweden/AGAT"
-LABEL org.opencontainers.image.revision="219ba1d3d0d7fbc66393595534bb6c333b08b238"
+LABEL org.opencontainers.image.revision="f91567d467e6be79a5f71b24a54864ab13bdd278"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER
diff --git a/target/executable/arriba/.config.vsh.yaml b/target/executable/arriba/.config.vsh.yaml
index 8a07aa18..4a5a650c 100644
--- a/target/executable/arriba/.config.vsh.yaml
+++ b/target/executable/arriba/.config.vsh.yaml
@@ -709,9 +709,9 @@ build_info:
   output: "target/executable/arriba"
   executable: "target/executable/arriba/arriba"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/executable/arriba/arriba b/target/executable/arriba/arriba
index 35828e6b..e7e87423 100755
--- a/target/executable/arriba/arriba
+++ b/target/executable/arriba/arriba
@@ -452,9 +452,9 @@ RUN arriba -h | grep 'Version:' 2>&1 |  sed 's/Version:\s\(.*\)/arriba: "\1"/' >
 
 LABEL org.opencontainers.image.authors="Robrecht Cannoodt"
 LABEL org.opencontainers.image.description="Companion container for running component arriba"
-LABEL org.opencontainers.image.created="2025-06-23T06:29:29Z"
+LABEL org.opencontainers.image.created="2025-06-24T10:40:46Z"
 LABEL org.opencontainers.image.source="https://github.com/suhrig/arriba"
-LABEL org.opencontainers.image.revision="219ba1d3d0d7fbc66393595534bb6c333b08b238"
+LABEL org.opencontainers.image.revision="f91567d467e6be79a5f71b24a54864ab13bdd278"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER
diff --git a/target/executable/bases2fastq/.config.vsh.yaml b/target/executable/bases2fastq/.config.vsh.yaml
index 8533827c..d4426fee 100644
--- a/target/executable/bases2fastq/.config.vsh.yaml
+++ b/target/executable/bases2fastq/.config.vsh.yaml
@@ -397,9 +397,9 @@ build_info:
   output: "target/executable/bases2fastq"
   executable: "target/executable/bases2fastq/bases2fastq"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/executable/bases2fastq/bases2fastq b/target/executable/bases2fastq/bases2fastq
index 745fd959..e9efc729 100755
--- a/target/executable/bases2fastq/bases2fastq
+++ b/target/executable/bases2fastq/bases2fastq
@@ -456,9 +456,9 @@ RUN echo "bases2fastq: $(bases2fastq --version | cut -d' ' -f3)" > /var/software
 
 LABEL org.opencontainers.image.authors="Dries Schaumont"
 LABEL org.opencontainers.image.description="Companion container for running component bases2fastq"
-LABEL org.opencontainers.image.created="2025-06-23T06:29:24Z"
+LABEL org.opencontainers.image.created="2025-06-24T10:40:41Z"
 LABEL org.opencontainers.image.source="https://github.com/viash-hub/biobox"
-LABEL org.opencontainers.image.revision="219ba1d3d0d7fbc66393595534bb6c333b08b238"
+LABEL org.opencontainers.image.revision="f91567d467e6be79a5f71b24a54864ab13bdd278"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER
diff --git a/target/executable/bbmap/bbmap_bbsplit/.config.vsh.yaml b/target/executable/bbmap/bbmap_bbsplit/.config.vsh.yaml
index ce86a6d2..84751b38 100644
--- a/target/executable/bbmap/bbmap_bbsplit/.config.vsh.yaml
+++ b/target/executable/bbmap/bbmap_bbsplit/.config.vsh.yaml
@@ -371,9 +371,9 @@ build_info:
   output: "target/executable/bbmap/bbmap_bbsplit"
   executable: "target/executable/bbmap/bbmap_bbsplit/bbmap_bbsplit"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/executable/bbmap/bbmap_bbsplit/bbmap_bbsplit b/target/executable/bbmap/bbmap_bbsplit/bbmap_bbsplit
index d5411504..29a4866b 100755
--- a/target/executable/bbmap/bbmap_bbsplit/bbmap_bbsplit
+++ b/target/executable/bbmap/bbmap_bbsplit/bbmap_bbsplit
@@ -454,9 +454,9 @@ cp -r bbmap/* /usr/local/bin
 RUN bbsplit.sh --version 2>&1 | awk '/BBMap version/{print "BBMAP:", $NF}' > /var/software_versions.txt
 
 LABEL org.opencontainers.image.description="Companion container for running component bbmap bbmap_bbsplit"
-LABEL org.opencontainers.image.created="2025-06-23T06:29:30Z"
+LABEL org.opencontainers.image.created="2025-06-24T10:40:47Z"
 LABEL org.opencontainers.image.source="https://github.com/BioInfoTools/BBMap/blob/master/sh/bbsplit.sh"
-LABEL org.opencontainers.image.revision="219ba1d3d0d7fbc66393595534bb6c333b08b238"
+LABEL org.opencontainers.image.revision="f91567d467e6be79a5f71b24a54864ab13bdd278"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER
diff --git a/target/executable/bcftools/bcftools_annotate/.config.vsh.yaml b/target/executable/bcftools/bcftools_annotate/.config.vsh.yaml
index c4690472..3bc90514 100644
--- a/target/executable/bcftools/bcftools_annotate/.config.vsh.yaml
+++ b/target/executable/bcftools/bcftools_annotate/.config.vsh.yaml
@@ -468,9 +468,9 @@ build_info:
   output: "target/executable/bcftools/bcftools_annotate"
   executable: "target/executable/bcftools/bcftools_annotate/bcftools_annotate"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/executable/bcftools/bcftools_annotate/bcftools_annotate b/target/executable/bcftools/bcftools_annotate/bcftools_annotate
index c0737594..85024109 100755
--- a/target/executable/bcftools/bcftools_annotate/bcftools_annotate
+++ b/target/executable/bcftools/bcftools_annotate/bcftools_annotate
@@ -456,9 +456,9 @@ RUN echo "bcftools: \"$(bcftools --version | grep 'bcftools' | sed -n 's/^bcftoo
 
 LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo"
 LABEL org.opencontainers.image.description="Companion container for running component bcftools bcftools_annotate"
-LABEL org.opencontainers.image.created="2025-06-23T06:29:33Z"
+LABEL org.opencontainers.image.created="2025-06-24T10:40:50Z"
 LABEL org.opencontainers.image.source="https://github.com/samtools/bcftools"
-LABEL org.opencontainers.image.revision="219ba1d3d0d7fbc66393595534bb6c333b08b238"
+LABEL org.opencontainers.image.revision="f91567d467e6be79a5f71b24a54864ab13bdd278"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER
diff --git a/target/executable/bcftools/bcftools_concat/.config.vsh.yaml b/target/executable/bcftools/bcftools_concat/.config.vsh.yaml
index 9e01de9e..85bc154d 100644
--- a/target/executable/bcftools/bcftools_concat/.config.vsh.yaml
+++ b/target/executable/bcftools/bcftools_concat/.config.vsh.yaml
@@ -334,9 +334,9 @@ build_info:
   output: "target/executable/bcftools/bcftools_concat"
   executable: "target/executable/bcftools/bcftools_concat/bcftools_concat"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/executable/bcftools/bcftools_concat/bcftools_concat b/target/executable/bcftools/bcftools_concat/bcftools_concat
index aded23d2..1062ff94 100755
--- a/target/executable/bcftools/bcftools_concat/bcftools_concat
+++ b/target/executable/bcftools/bcftools_concat/bcftools_concat
@@ -456,9 +456,9 @@ RUN echo "bcftools: \"$(bcftools --version | grep 'bcftools' | sed -n 's/^bcftoo
 
 LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo"
 LABEL org.opencontainers.image.description="Companion container for running component bcftools bcftools_concat"
-LABEL org.opencontainers.image.created="2025-06-23T06:29:33Z"
+LABEL org.opencontainers.image.created="2025-06-24T10:40:50Z"
 LABEL org.opencontainers.image.source="https://github.com/samtools/bcftools"
-LABEL org.opencontainers.image.revision="219ba1d3d0d7fbc66393595534bb6c333b08b238"
+LABEL org.opencontainers.image.revision="f91567d467e6be79a5f71b24a54864ab13bdd278"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER
diff --git a/target/executable/bcftools/bcftools_norm/.config.vsh.yaml b/target/executable/bcftools/bcftools_norm/.config.vsh.yaml
index 500ae266..33a5a502 100644
--- a/target/executable/bcftools/bcftools_norm/.config.vsh.yaml
+++ b/target/executable/bcftools/bcftools_norm/.config.vsh.yaml
@@ -415,9 +415,9 @@ build_info:
   output: "target/executable/bcftools/bcftools_norm"
   executable: "target/executable/bcftools/bcftools_norm/bcftools_norm"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/executable/bcftools/bcftools_norm/bcftools_norm b/target/executable/bcftools/bcftools_norm/bcftools_norm
index 170d8abb..7e141929 100755
--- a/target/executable/bcftools/bcftools_norm/bcftools_norm
+++ b/target/executable/bcftools/bcftools_norm/bcftools_norm
@@ -456,9 +456,9 @@ RUN echo "bcftools: \"$(bcftools --version | grep 'bcftools' | sed -n 's/^bcftoo
 
 LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo"
 LABEL org.opencontainers.image.description="Companion container for running component bcftools bcftools_norm"
-LABEL org.opencontainers.image.created="2025-06-23T06:29:33Z"
+LABEL org.opencontainers.image.created="2025-06-24T10:40:50Z"
 LABEL org.opencontainers.image.source="https://github.com/samtools/bcftools"
-LABEL org.opencontainers.image.revision="219ba1d3d0d7fbc66393595534bb6c333b08b238"
+LABEL org.opencontainers.image.revision="f91567d467e6be79a5f71b24a54864ab13bdd278"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER
diff --git a/target/executable/bcftools/bcftools_sort/.config.vsh.yaml b/target/executable/bcftools/bcftools_sort/.config.vsh.yaml
index c60e65fb..6a4b20a7 100644
--- a/target/executable/bcftools/bcftools_sort/.config.vsh.yaml
+++ b/target/executable/bcftools/bcftools_sort/.config.vsh.yaml
@@ -184,9 +184,9 @@ build_info:
   output: "target/executable/bcftools/bcftools_sort"
   executable: "target/executable/bcftools/bcftools_sort/bcftools_sort"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/executable/bcftools/bcftools_sort/bcftools_sort b/target/executable/bcftools/bcftools_sort/bcftools_sort
index bf75cbde..3c9aa47c 100755
--- a/target/executable/bcftools/bcftools_sort/bcftools_sort
+++ b/target/executable/bcftools/bcftools_sort/bcftools_sort
@@ -456,9 +456,9 @@ RUN echo "bcftools: \"$(bcftools --version | grep 'bcftools' | sed -n 's/^bcftoo
 
 LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo"
 LABEL org.opencontainers.image.description="Companion container for running component bcftools bcftools_sort"
-LABEL org.opencontainers.image.created="2025-06-23T06:29:33Z"
+LABEL org.opencontainers.image.created="2025-06-24T10:40:50Z"
 LABEL org.opencontainers.image.source="https://github.com/samtools/bcftools"
-LABEL org.opencontainers.image.revision="219ba1d3d0d7fbc66393595534bb6c333b08b238"
+LABEL org.opencontainers.image.revision="f91567d467e6be79a5f71b24a54864ab13bdd278"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER
diff --git a/target/executable/bcftools/bcftools_stats/.config.vsh.yaml b/target/executable/bcftools/bcftools_stats/.config.vsh.yaml
index 18fdff94..cec60153 100644
--- a/target/executable/bcftools/bcftools_stats/.config.vsh.yaml
+++ b/target/executable/bcftools/bcftools_stats/.config.vsh.yaml
@@ -457,9 +457,9 @@ build_info:
   output: "target/executable/bcftools/bcftools_stats"
   executable: "target/executable/bcftools/bcftools_stats/bcftools_stats"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/executable/bcftools/bcftools_stats/bcftools_stats b/target/executable/bcftools/bcftools_stats/bcftools_stats
index bb89df09..f81d4274 100755
--- a/target/executable/bcftools/bcftools_stats/bcftools_stats
+++ b/target/executable/bcftools/bcftools_stats/bcftools_stats
@@ -456,9 +456,9 @@ RUN echo "bcftools: \"$(bcftools --version | grep 'bcftools' | sed -n 's/^bcftoo
 
 LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo"
 LABEL org.opencontainers.image.description="Companion container for running component bcftools bcftools_stats"
-LABEL org.opencontainers.image.created="2025-06-23T06:29:32Z"
+LABEL org.opencontainers.image.created="2025-06-24T10:40:49Z"
 LABEL org.opencontainers.image.source="https://github.com/samtools/bcftools"
-LABEL org.opencontainers.image.revision="219ba1d3d0d7fbc66393595534bb6c333b08b238"
+LABEL org.opencontainers.image.revision="f91567d467e6be79a5f71b24a54864ab13bdd278"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER
diff --git a/target/executable/bcl_convert/.config.vsh.yaml b/target/executable/bcl_convert/.config.vsh.yaml
index c7355e2e..36019770 100644
--- a/target/executable/bcl_convert/.config.vsh.yaml
+++ b/target/executable/bcl_convert/.config.vsh.yaml
@@ -431,9 +431,9 @@ build_info:
   output: "target/executable/bcl_convert"
   executable: "target/executable/bcl_convert/bcl_convert"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/executable/bcl_convert/bcl_convert b/target/executable/bcl_convert/bcl_convert
index bbf7a1f6..dd17627f 100755
--- a/target/executable/bcl_convert/bcl_convert
+++ b/target/executable/bcl_convert/bcl_convert
@@ -462,9 +462,9 @@ RUN echo "bcl-convert: \"$(bcl-convert -V 2>&1 >/dev/null | sed -n '/Version/ s/
 
 LABEL org.opencontainers.image.authors="Toni Verbeiren, Dorien Roosen"
 LABEL org.opencontainers.image.description="Companion container for running component bcl_convert"
-LABEL org.opencontainers.image.created="2025-06-23T06:29:25Z"
+LABEL org.opencontainers.image.created="2025-06-24T10:40:42Z"
 LABEL org.opencontainers.image.source="https://github.com/viash-hub/biobox"
-LABEL org.opencontainers.image.revision="219ba1d3d0d7fbc66393595534bb6c333b08b238"
+LABEL org.opencontainers.image.revision="f91567d467e6be79a5f71b24a54864ab13bdd278"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER
diff --git a/target/executable/bd_rhapsody/bd_rhapsody_make_reference/.config.vsh.yaml b/target/executable/bd_rhapsody/bd_rhapsody_make_reference/.config.vsh.yaml
index 2e6e8243..71db7743 100644
--- a/target/executable/bd_rhapsody/bd_rhapsody_make_reference/.config.vsh.yaml
+++ b/target/executable/bd_rhapsody/bd_rhapsody_make_reference/.config.vsh.yaml
@@ -279,9 +279,9 @@ build_info:
   output: "target/executable/bd_rhapsody/bd_rhapsody_make_reference"
   executable: "target/executable/bd_rhapsody/bd_rhapsody_make_reference/bd_rhapsody_make_reference"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/executable/bd_rhapsody/bd_rhapsody_make_reference/bd_rhapsody_make_reference b/target/executable/bd_rhapsody/bd_rhapsody_make_reference/bd_rhapsody_make_reference
index f8dd94bd..5e4cb508 100755
--- a/target/executable/bd_rhapsody/bd_rhapsody_make_reference/bd_rhapsody_make_reference
+++ b/target/executable/bd_rhapsody/bd_rhapsody_make_reference/bd_rhapsody_make_reference
@@ -465,9 +465,9 @@ RUN VERSION=$(ls -v /var/bd_rhapsody_cwl | grep '^v' | sed 's#v##' | tail -1)
 RUN echo "bdgenomics/rhapsody: \"$VERSION\"" > /var/software_versions.txt
 LABEL org.opencontainers.image.authors="Robrecht Cannoodt, Weiwei Schultz"
 LABEL org.opencontainers.image.description="Companion container for running component bd_rhapsody bd_rhapsody_make_reference"
-LABEL org.opencontainers.image.created="2025-06-23T06:29:26Z"
+LABEL org.opencontainers.image.created="2025-06-24T10:40:43Z"
 LABEL org.opencontainers.image.source="https://bitbucket.org/CRSwDev/cwl/src/master/v2.2.1/Extra_Utilities/"
-LABEL org.opencontainers.image.revision="219ba1d3d0d7fbc66393595534bb6c333b08b238"
+LABEL org.opencontainers.image.revision="f91567d467e6be79a5f71b24a54864ab13bdd278"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER
diff --git a/target/executable/bd_rhapsody/bd_rhapsody_sequence_analysis/.config.vsh.yaml b/target/executable/bd_rhapsody/bd_rhapsody_sequence_analysis/.config.vsh.yaml
index 4dd735e6..1ece3c5e 100644
--- a/target/executable/bd_rhapsody/bd_rhapsody_sequence_analysis/.config.vsh.yaml
+++ b/target/executable/bd_rhapsody/bd_rhapsody_sequence_analysis/.config.vsh.yaml
@@ -1120,9 +1120,9 @@ build_info:
   output: "target/executable/bd_rhapsody/bd_rhapsody_sequence_analysis"
   executable: "target/executable/bd_rhapsody/bd_rhapsody_sequence_analysis/bd_rhapsody_sequence_analysis"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/executable/bd_rhapsody/bd_rhapsody_sequence_analysis/bd_rhapsody_sequence_analysis b/target/executable/bd_rhapsody/bd_rhapsody_sequence_analysis/bd_rhapsody_sequence_analysis
index 07690933..bf996cb1 100755
--- a/target/executable/bd_rhapsody/bd_rhapsody_sequence_analysis/bd_rhapsody_sequence_analysis
+++ b/target/executable/bd_rhapsody/bd_rhapsody_sequence_analysis/bd_rhapsody_sequence_analysis
@@ -465,9 +465,9 @@ RUN VERSION=$(ls -v /var/bd_rhapsody_cwl | grep '^v' | sed 's#v##' | tail -1)
 RUN echo "bdgenomics/rhapsody: \"$VERSION\"" > /var/software_versions.txt
 LABEL org.opencontainers.image.authors="Robrecht Cannoodt, Weiwei Schultz"
 LABEL org.opencontainers.image.description="Companion container for running component bd_rhapsody bd_rhapsody_sequence_analysis"
-LABEL org.opencontainers.image.created="2025-06-23T06:29:26Z"
+LABEL org.opencontainers.image.created="2025-06-24T10:40:43Z"
 LABEL org.opencontainers.image.source="https://bitbucket.org/CRSwDev/cwl/src/master/v2.2.1"
-LABEL org.opencontainers.image.revision="219ba1d3d0d7fbc66393595534bb6c333b08b238"
+LABEL org.opencontainers.image.revision="f91567d467e6be79a5f71b24a54864ab13bdd278"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER
diff --git a/target/executable/bedtools/bedtools_bamtobed/.config.vsh.yaml b/target/executable/bedtools/bedtools_bamtobed/.config.vsh.yaml
index eeb8260d..be5731f5 100644
--- a/target/executable/bedtools/bedtools_bamtobed/.config.vsh.yaml
+++ b/target/executable/bedtools/bedtools_bamtobed/.config.vsh.yaml
@@ -234,9 +234,9 @@ build_info:
   output: "target/executable/bedtools/bedtools_bamtobed"
   executable: "target/executable/bedtools/bedtools_bamtobed/bedtools_bamtobed"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/executable/bedtools/bedtools_bamtobed/bedtools_bamtobed b/target/executable/bedtools/bedtools_bamtobed/bedtools_bamtobed
index fe45a70e..52b5aa69 100755
--- a/target/executable/bedtools/bedtools_bamtobed/bedtools_bamtobed
+++ b/target/executable/bedtools/bedtools_bamtobed/bedtools_bamtobed
@@ -456,9 +456,9 @@ RUN echo "bedtools: \"$(bedtools --version | sed -n 's/^bedtools //p')\"" > /var
 
 LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo"
 LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_bamtobed"
-LABEL org.opencontainers.image.created="2025-06-23T06:29:27Z"
+LABEL org.opencontainers.image.created="2025-06-24T10:40:44Z"
 LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2"
-LABEL org.opencontainers.image.revision="219ba1d3d0d7fbc66393595534bb6c333b08b238"
+LABEL org.opencontainers.image.revision="f91567d467e6be79a5f71b24a54864ab13bdd278"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER
diff --git a/target/executable/bedtools/bedtools_bamtofastq/.config.vsh.yaml b/target/executable/bedtools/bedtools_bamtofastq/.config.vsh.yaml
index 2388219b..fb427765 100644
--- a/target/executable/bedtools/bedtools_bamtofastq/.config.vsh.yaml
+++ b/target/executable/bedtools/bedtools_bamtofastq/.config.vsh.yaml
@@ -186,9 +186,9 @@ build_info:
   output: "target/executable/bedtools/bedtools_bamtofastq"
   executable: "target/executable/bedtools/bedtools_bamtofastq/bedtools_bamtofastq"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/executable/bedtools/bedtools_bamtofastq/bedtools_bamtofastq b/target/executable/bedtools/bedtools_bamtofastq/bedtools_bamtofastq
index 1a6c03e3..bc5bcb31 100755
--- a/target/executable/bedtools/bedtools_bamtofastq/bedtools_bamtofastq
+++ b/target/executable/bedtools/bedtools_bamtofastq/bedtools_bamtofastq
@@ -456,9 +456,9 @@ RUN echo "bedtools: \"$(bedtools --version | sed -n 's/^bedtools //p')\"" > /var
 
 LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo"
 LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_bamtofastq"
-LABEL org.opencontainers.image.created="2025-06-23T06:29:26Z"
+LABEL org.opencontainers.image.created="2025-06-24T10:40:43Z"
 LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2"
-LABEL org.opencontainers.image.revision="219ba1d3d0d7fbc66393595534bb6c333b08b238"
+LABEL org.opencontainers.image.revision="f91567d467e6be79a5f71b24a54864ab13bdd278"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER
diff --git a/target/executable/bedtools/bedtools_bed12tobed6/.config.vsh.yaml b/target/executable/bedtools/bedtools_bed12tobed6/.config.vsh.yaml
index fc7009c0..ecd767ea 100644
--- a/target/executable/bedtools/bedtools_bed12tobed6/.config.vsh.yaml
+++ b/target/executable/bedtools/bedtools_bed12tobed6/.config.vsh.yaml
@@ -175,9 +175,9 @@ build_info:
   output: "target/executable/bedtools/bedtools_bed12tobed6"
   executable: "target/executable/bedtools/bedtools_bed12tobed6/bedtools_bed12tobed6"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/executable/bedtools/bedtools_bed12tobed6/bedtools_bed12tobed6 b/target/executable/bedtools/bedtools_bed12tobed6/bedtools_bed12tobed6
index 47886a58..9883a62b 100755
--- a/target/executable/bedtools/bedtools_bed12tobed6/bedtools_bed12tobed6
+++ b/target/executable/bedtools/bedtools_bed12tobed6/bedtools_bed12tobed6
@@ -456,9 +456,9 @@ RUN echo "bedtools: \"$(bedtools --version | sed -n 's/^bedtools //p')\"" > /var
 
 LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo"
 LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_bed12tobed6"
-LABEL org.opencontainers.image.created="2025-06-23T06:29:28Z"
+LABEL org.opencontainers.image.created="2025-06-24T10:40:45Z"
 LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2"
-LABEL org.opencontainers.image.revision="219ba1d3d0d7fbc66393595534bb6c333b08b238"
+LABEL org.opencontainers.image.revision="f91567d467e6be79a5f71b24a54864ab13bdd278"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER
diff --git a/target/executable/bedtools/bedtools_bedtobam/.config.vsh.yaml b/target/executable/bedtools/bedtools_bedtobam/.config.vsh.yaml
index 7a0d7c68..03a16914 100644
--- a/target/executable/bedtools/bedtools_bedtobam/.config.vsh.yaml
+++ b/target/executable/bedtools/bedtools_bedtobam/.config.vsh.yaml
@@ -213,9 +213,9 @@ build_info:
   output: "target/executable/bedtools/bedtools_bedtobam"
   executable: "target/executable/bedtools/bedtools_bedtobam/bedtools_bedtobam"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/executable/bedtools/bedtools_bedtobam/bedtools_bedtobam b/target/executable/bedtools/bedtools_bedtobam/bedtools_bedtobam
index 05761de4..ef2563ec 100755
--- a/target/executable/bedtools/bedtools_bedtobam/bedtools_bedtobam
+++ b/target/executable/bedtools/bedtools_bedtobam/bedtools_bedtobam
@@ -456,9 +456,9 @@ RUN echo "bedtools: \"$(bedtools --version | sed -n 's/^bedtools //p')\"" > /var
 
 LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo"
 LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_bedtobam"
-LABEL org.opencontainers.image.created="2025-06-23T06:29:28Z"
+LABEL org.opencontainers.image.created="2025-06-24T10:40:45Z"
 LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2"
-LABEL org.opencontainers.image.revision="219ba1d3d0d7fbc66393595534bb6c333b08b238"
+LABEL org.opencontainers.image.revision="f91567d467e6be79a5f71b24a54864ab13bdd278"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER
diff --git a/target/executable/bedtools/bedtools_genomecov/.config.vsh.yaml b/target/executable/bedtools/bedtools_genomecov/.config.vsh.yaml
index 5ea049f7..e0d93590 100644
--- a/target/executable/bedtools/bedtools_genomecov/.config.vsh.yaml
+++ b/target/executable/bedtools/bedtools_genomecov/.config.vsh.yaml
@@ -336,9 +336,9 @@ build_info:
   output: "target/executable/bedtools/bedtools_genomecov"
   executable: "target/executable/bedtools/bedtools_genomecov/bedtools_genomecov"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/executable/bedtools/bedtools_genomecov/bedtools_genomecov b/target/executable/bedtools/bedtools_genomecov/bedtools_genomecov
index 8f405068..48e09fda 100755
--- a/target/executable/bedtools/bedtools_genomecov/bedtools_genomecov
+++ b/target/executable/bedtools/bedtools_genomecov/bedtools_genomecov
@@ -456,9 +456,9 @@ RUN echo "bedtools: \"$(bedtools --version | sed -n 's/^bedtools //p')\"" > /var
 
 LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo"
 LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_genomecov"
-LABEL org.opencontainers.image.created="2025-06-23T06:29:26Z"
+LABEL org.opencontainers.image.created="2025-06-24T10:40:44Z"
 LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2"
-LABEL org.opencontainers.image.revision="219ba1d3d0d7fbc66393595534bb6c333b08b238"
+LABEL org.opencontainers.image.revision="f91567d467e6be79a5f71b24a54864ab13bdd278"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER
diff --git a/target/executable/bedtools/bedtools_getfasta/.config.vsh.yaml b/target/executable/bedtools/bedtools_getfasta/.config.vsh.yaml
index 98c12b5f..2ee88ea6 100644
--- a/target/executable/bedtools/bedtools_getfasta/.config.vsh.yaml
+++ b/target/executable/bedtools/bedtools_getfasta/.config.vsh.yaml
@@ -235,9 +235,9 @@ build_info:
   output: "target/executable/bedtools/bedtools_getfasta"
   executable: "target/executable/bedtools/bedtools_getfasta/bedtools_getfasta"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/executable/bedtools/bedtools_getfasta/bedtools_getfasta b/target/executable/bedtools/bedtools_getfasta/bedtools_getfasta
index 19d16373..48e21abd 100755
--- a/target/executable/bedtools/bedtools_getfasta/bedtools_getfasta
+++ b/target/executable/bedtools/bedtools_getfasta/bedtools_getfasta
@@ -456,9 +456,9 @@ RUN echo "bedtools: \"$(bedtools --version | sed -n 's/^bedtools //p')\"" > /var
 
 LABEL org.opencontainers.image.authors="Dries Schaumont"
 LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_getfasta"
-LABEL org.opencontainers.image.created="2025-06-23T06:29:27Z"
+LABEL org.opencontainers.image.created="2025-06-24T10:40:44Z"
 LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2"
-LABEL org.opencontainers.image.revision="219ba1d3d0d7fbc66393595534bb6c333b08b238"
+LABEL org.opencontainers.image.revision="f91567d467e6be79a5f71b24a54864ab13bdd278"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER
diff --git a/target/executable/bedtools/bedtools_groupby/.config.vsh.yaml b/target/executable/bedtools/bedtools_groupby/.config.vsh.yaml
index 8cd1344a..078220fc 100644
--- a/target/executable/bedtools/bedtools_groupby/.config.vsh.yaml
+++ b/target/executable/bedtools/bedtools_groupby/.config.vsh.yaml
@@ -272,9 +272,9 @@ build_info:
   output: "target/executable/bedtools/bedtools_groupby"
   executable: "target/executable/bedtools/bedtools_groupby/bedtools_groupby"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/executable/bedtools/bedtools_groupby/bedtools_groupby b/target/executable/bedtools/bedtools_groupby/bedtools_groupby
index bc7c3776..d3d674e8 100755
--- a/target/executable/bedtools/bedtools_groupby/bedtools_groupby
+++ b/target/executable/bedtools/bedtools_groupby/bedtools_groupby
@@ -456,9 +456,9 @@ RUN echo "bedtools: \"$(bedtools --version | sed -n 's/^bedtools //p')\"" > /var
 
 LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo"
 LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_groupby"
-LABEL org.opencontainers.image.created="2025-06-23T06:29:28Z"
+LABEL org.opencontainers.image.created="2025-06-24T10:40:45Z"
 LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2"
-LABEL org.opencontainers.image.revision="219ba1d3d0d7fbc66393595534bb6c333b08b238"
+LABEL org.opencontainers.image.revision="f91567d467e6be79a5f71b24a54864ab13bdd278"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER
diff --git a/target/executable/bedtools/bedtools_intersect/.config.vsh.yaml b/target/executable/bedtools/bedtools_intersect/.config.vsh.yaml
index d3f3e0a6..2bb219d8 100644
--- a/target/executable/bedtools/bedtools_intersect/.config.vsh.yaml
+++ b/target/executable/bedtools/bedtools_intersect/.config.vsh.yaml
@@ -409,9 +409,9 @@ build_info:
   output: "target/executable/bedtools/bedtools_intersect"
   executable: "target/executable/bedtools/bedtools_intersect/bedtools_intersect"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/executable/bedtools/bedtools_intersect/bedtools_intersect b/target/executable/bedtools/bedtools_intersect/bedtools_intersect
index 832f75eb..ed8d30fe 100755
--- a/target/executable/bedtools/bedtools_intersect/bedtools_intersect
+++ b/target/executable/bedtools/bedtools_intersect/bedtools_intersect
@@ -456,9 +456,9 @@ RUN echo "bedtools: \"$(bedtools --version | sed -n 's/^bedtools //p')\"" > /var
 
 LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo"
 LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_intersect"
-LABEL org.opencontainers.image.created="2025-06-23T06:29:26Z"
+LABEL org.opencontainers.image.created="2025-06-24T10:40:43Z"
 LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2"
-LABEL org.opencontainers.image.revision="219ba1d3d0d7fbc66393595534bb6c333b08b238"
+LABEL org.opencontainers.image.revision="f91567d467e6be79a5f71b24a54864ab13bdd278"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER
diff --git a/target/executable/bedtools/bedtools_links/.config.vsh.yaml b/target/executable/bedtools/bedtools_links/.config.vsh.yaml
index 8527776e..013771be 100644
--- a/target/executable/bedtools/bedtools_links/.config.vsh.yaml
+++ b/target/executable/bedtools/bedtools_links/.config.vsh.yaml
@@ -209,9 +209,9 @@ build_info:
   output: "target/executable/bedtools/bedtools_links"
   executable: "target/executable/bedtools/bedtools_links/bedtools_links"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/executable/bedtools/bedtools_links/bedtools_links b/target/executable/bedtools/bedtools_links/bedtools_links
index e4fb8913..9c5079a1 100755
--- a/target/executable/bedtools/bedtools_links/bedtools_links
+++ b/target/executable/bedtools/bedtools_links/bedtools_links
@@ -456,9 +456,9 @@ RUN echo "bedtools: \"$(bedtools --version | sed -n 's/^bedtools //p')\"" > /var
 
 LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo"
 LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_links"
-LABEL org.opencontainers.image.created="2025-06-23T06:29:25Z"
+LABEL org.opencontainers.image.created="2025-06-24T10:40:43Z"
 LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2"
-LABEL org.opencontainers.image.revision="219ba1d3d0d7fbc66393595534bb6c333b08b238"
+LABEL org.opencontainers.image.revision="f91567d467e6be79a5f71b24a54864ab13bdd278"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER
diff --git a/target/executable/bedtools/bedtools_merge/.config.vsh.yaml b/target/executable/bedtools/bedtools_merge/.config.vsh.yaml
index 9444d8e9..26eedf0d 100644
--- a/target/executable/bedtools/bedtools_merge/.config.vsh.yaml
+++ b/target/executable/bedtools/bedtools_merge/.config.vsh.yaml
@@ -278,9 +278,9 @@ build_info:
   output: "target/executable/bedtools/bedtools_merge"
   executable: "target/executable/bedtools/bedtools_merge/bedtools_merge"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/executable/bedtools/bedtools_merge/bedtools_merge b/target/executable/bedtools/bedtools_merge/bedtools_merge
index 9a775033..2845d63b 100755
--- a/target/executable/bedtools/bedtools_merge/bedtools_merge
+++ b/target/executable/bedtools/bedtools_merge/bedtools_merge
@@ -456,9 +456,9 @@ RUN echo "bedtools: \"$(bedtools --version | sed -n 's/^bedtools //p')\"" > /var
 
 LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo"
 LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_merge"
-LABEL org.opencontainers.image.created="2025-06-23T06:29:27Z"
+LABEL org.opencontainers.image.created="2025-06-24T10:40:44Z"
 LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2"
-LABEL org.opencontainers.image.revision="219ba1d3d0d7fbc66393595534bb6c333b08b238"
+LABEL org.opencontainers.image.revision="f91567d467e6be79a5f71b24a54864ab13bdd278"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER
diff --git a/target/executable/bedtools/bedtools_sort/.config.vsh.yaml b/target/executable/bedtools/bedtools_sort/.config.vsh.yaml
index ce3628e9..1b02937c 100644
--- a/target/executable/bedtools/bedtools_sort/.config.vsh.yaml
+++ b/target/executable/bedtools/bedtools_sort/.config.vsh.yaml
@@ -221,9 +221,9 @@ build_info:
   output: "target/executable/bedtools/bedtools_sort"
   executable: "target/executable/bedtools/bedtools_sort/bedtools_sort"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/executable/bedtools/bedtools_sort/bedtools_sort b/target/executable/bedtools/bedtools_sort/bedtools_sort
index 0da85669..c95d5ff0 100755
--- a/target/executable/bedtools/bedtools_sort/bedtools_sort
+++ b/target/executable/bedtools/bedtools_sort/bedtools_sort
@@ -456,9 +456,9 @@ RUN echo "bedtools: \"$(bedtools --version | sed -n 's/^bedtools //p')\"" > /var
 
 LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo"
 LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_sort"
-LABEL org.opencontainers.image.created="2025-06-23T06:29:26Z"
+LABEL org.opencontainers.image.created="2025-06-24T10:40:43Z"
 LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2"
-LABEL org.opencontainers.image.revision="219ba1d3d0d7fbc66393595534bb6c333b08b238"
+LABEL org.opencontainers.image.revision="f91567d467e6be79a5f71b24a54864ab13bdd278"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER
diff --git a/target/executable/busco/busco_download_datasets/.config.vsh.yaml b/target/executable/busco/busco_download_datasets/.config.vsh.yaml
index 6bbc18b7..16cf7297 100644
--- a/target/executable/busco/busco_download_datasets/.config.vsh.yaml
+++ b/target/executable/busco/busco_download_datasets/.config.vsh.yaml
@@ -161,9 +161,9 @@ build_info:
   output: "target/executable/busco/busco_download_datasets"
   executable: "target/executable/busco/busco_download_datasets/busco_download_datasets"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/executable/busco/busco_download_datasets/busco_download_datasets b/target/executable/busco/busco_download_datasets/busco_download_datasets
index cbcdb396..a5f0e37a 100755
--- a/target/executable/busco/busco_download_datasets/busco_download_datasets
+++ b/target/executable/busco/busco_download_datasets/busco_download_datasets
@@ -452,9 +452,9 @@ RUN busco --version | sed 's/BUSCO\s\(.*\)/busco: "\1"/' > /var/software_version
 
 LABEL org.opencontainers.image.authors="Dorien Roosen"
 LABEL org.opencontainers.image.description="Companion container for running component busco busco_download_datasets"
-LABEL org.opencontainers.image.created="2025-06-23T06:29:28Z"
+LABEL org.opencontainers.image.created="2025-06-24T10:40:45Z"
 LABEL org.opencontainers.image.source="https://gitlab.com/ezlab/busco"
-LABEL org.opencontainers.image.revision="219ba1d3d0d7fbc66393595534bb6c333b08b238"
+LABEL org.opencontainers.image.revision="f91567d467e6be79a5f71b24a54864ab13bdd278"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER
diff --git a/target/executable/busco/busco_list_datasets/.config.vsh.yaml b/target/executable/busco/busco_list_datasets/.config.vsh.yaml
index 799fef8e..7fdb7b0c 100644
--- a/target/executable/busco/busco_list_datasets/.config.vsh.yaml
+++ b/target/executable/busco/busco_list_datasets/.config.vsh.yaml
@@ -148,9 +148,9 @@ build_info:
   output: "target/executable/busco/busco_list_datasets"
   executable: "target/executable/busco/busco_list_datasets/busco_list_datasets"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/executable/busco/busco_list_datasets/busco_list_datasets b/target/executable/busco/busco_list_datasets/busco_list_datasets
index ce03b321..9c849979 100755
--- a/target/executable/busco/busco_list_datasets/busco_list_datasets
+++ b/target/executable/busco/busco_list_datasets/busco_list_datasets
@@ -452,9 +452,9 @@ RUN busco --version | sed 's/BUSCO\s\(.*\)/busco: "\1"/' > /var/software_version
 
 LABEL org.opencontainers.image.authors="Dorien Roosen"
 LABEL org.opencontainers.image.description="Companion container for running component busco busco_list_datasets"
-LABEL org.opencontainers.image.created="2025-06-23T06:29:28Z"
+LABEL org.opencontainers.image.created="2025-06-24T10:40:46Z"
 LABEL org.opencontainers.image.source="https://gitlab.com/ezlab/busco"
-LABEL org.opencontainers.image.revision="219ba1d3d0d7fbc66393595534bb6c333b08b238"
+LABEL org.opencontainers.image.revision="f91567d467e6be79a5f71b24a54864ab13bdd278"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER
diff --git a/target/executable/busco/busco_run/.config.vsh.yaml b/target/executable/busco/busco_run/.config.vsh.yaml
index d47b5c23..c4a07313 100644
--- a/target/executable/busco/busco_run/.config.vsh.yaml
+++ b/target/executable/busco/busco_run/.config.vsh.yaml
@@ -426,9 +426,9 @@ build_info:
   output: "target/executable/busco/busco_run"
   executable: "target/executable/busco/busco_run/busco_run"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/executable/busco/busco_run/busco_run b/target/executable/busco/busco_run/busco_run
index 5778c1d3..3349a112 100755
--- a/target/executable/busco/busco_run/busco_run
+++ b/target/executable/busco/busco_run/busco_run
@@ -452,9 +452,9 @@ RUN busco --version | sed 's/BUSCO\s\(.*\)/busco: "\1"/' > /var/software_version
 
 LABEL org.opencontainers.image.authors="Dorien Roosen"
 LABEL org.opencontainers.image.description="Companion container for running component busco busco_run"
-LABEL org.opencontainers.image.created="2025-06-23T06:29:29Z"
+LABEL org.opencontainers.image.created="2025-06-24T10:40:46Z"
 LABEL org.opencontainers.image.source="https://gitlab.com/ezlab/busco"
-LABEL org.opencontainers.image.revision="219ba1d3d0d7fbc66393595534bb6c333b08b238"
+LABEL org.opencontainers.image.revision="f91567d467e6be79a5f71b24a54864ab13bdd278"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER
diff --git a/target/executable/cellranger/cellranger_count/.config.vsh.yaml b/target/executable/cellranger/cellranger_count/.config.vsh.yaml
index 75507490..e395dab2 100644
--- a/target/executable/cellranger/cellranger_count/.config.vsh.yaml
+++ b/target/executable/cellranger/cellranger_count/.config.vsh.yaml
@@ -373,9 +373,9 @@ build_info:
   output: "target/executable/cellranger/cellranger_count"
   executable: "target/executable/cellranger/cellranger_count/cellranger_count"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/executable/cellranger/cellranger_count/cellranger_count b/target/executable/cellranger/cellranger_count/cellranger_count
index 19afdf06..de7839b7 100755
--- a/target/executable/cellranger/cellranger_count/cellranger_count
+++ b/target/executable/cellranger/cellranger_count/cellranger_count
@@ -456,9 +456,9 @@ RUN cellranger --version | sed 's/ cellranger-/: /' > /var/software_versions.txt
 
 LABEL org.opencontainers.image.authors="Emma Rousseau, Robrecht Cannoodt"
 LABEL org.opencontainers.image.description="Companion container for running component cellranger cellranger_count"
-LABEL org.opencontainers.image.created="2025-06-23T06:29:25Z"
+LABEL org.opencontainers.image.created="2025-06-24T10:40:42Z"
 LABEL org.opencontainers.image.source="https://github.com/10XGenomics/cellranger/blob/main/bin/sc_rna/count"
-LABEL org.opencontainers.image.revision="219ba1d3d0d7fbc66393595534bb6c333b08b238"
+LABEL org.opencontainers.image.revision="f91567d467e6be79a5f71b24a54864ab13bdd278"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER
diff --git a/target/executable/cellranger/cellranger_mkref/.config.vsh.yaml b/target/executable/cellranger/cellranger_mkref/.config.vsh.yaml
index b67ac28a..2a48b64d 100644
--- a/target/executable/cellranger/cellranger_mkref/.config.vsh.yaml
+++ b/target/executable/cellranger/cellranger_mkref/.config.vsh.yaml
@@ -193,9 +193,9 @@ build_info:
   output: "target/executable/cellranger/cellranger_mkref"
   executable: "target/executable/cellranger/cellranger_mkref/cellranger_mkref"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/executable/cellranger/cellranger_mkref/cellranger_mkref b/target/executable/cellranger/cellranger_mkref/cellranger_mkref
index 468210ae..e6c6bbcc 100755
--- a/target/executable/cellranger/cellranger_mkref/cellranger_mkref
+++ b/target/executable/cellranger/cellranger_mkref/cellranger_mkref
@@ -454,9 +454,9 @@ RUN apt-get update && \
 
 LABEL org.opencontainers.image.authors="Emma Rousseau"
 LABEL org.opencontainers.image.description="Companion container for running component cellranger cellranger_mkref"
-LABEL org.opencontainers.image.created="2025-06-23T06:29:24Z"
+LABEL org.opencontainers.image.created="2025-06-24T10:40:41Z"
 LABEL org.opencontainers.image.source="https://github.com/10XGenomics/cellranger/blob/main/lib/python/cellranger/reference_builder.py"
-LABEL org.opencontainers.image.revision="219ba1d3d0d7fbc66393595534bb6c333b08b238"
+LABEL org.opencontainers.image.revision="f91567d467e6be79a5f71b24a54864ab13bdd278"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER
diff --git a/target/executable/cutadapt/.config.vsh.yaml b/target/executable/cutadapt/.config.vsh.yaml
index f8d5de23..8b6f3963 100644
--- a/target/executable/cutadapt/.config.vsh.yaml
+++ b/target/executable/cutadapt/.config.vsh.yaml
@@ -743,9 +743,9 @@ build_info:
   output: "target/executable/cutadapt"
   executable: "target/executable/cutadapt/cutadapt"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/executable/cutadapt/cutadapt b/target/executable/cutadapt/cutadapt
index a4a8ebf5..ece45eb5 100755
--- a/target/executable/cutadapt/cutadapt
+++ b/target/executable/cutadapt/cutadapt
@@ -455,9 +455,9 @@ RUN cutadapt --version | sed 's/\(.*\)/cutadapt: "\1"/' > /var/software_versions
 
 LABEL org.opencontainers.image.authors="Toni Verbeiren"
 LABEL org.opencontainers.image.description="Companion container for running component cutadapt"
-LABEL org.opencontainers.image.created="2025-06-23T06:29:34Z"
+LABEL org.opencontainers.image.created="2025-06-24T10:40:51Z"
 LABEL org.opencontainers.image.source="https://github.com/marcelm/cutadapt"
-LABEL org.opencontainers.image.revision="219ba1d3d0d7fbc66393595534bb6c333b08b238"
+LABEL org.opencontainers.image.revision="f91567d467e6be79a5f71b24a54864ab13bdd278"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER
diff --git a/target/executable/falco/.config.vsh.yaml b/target/executable/falco/.config.vsh.yaml
index 623ddd4e..4db28120 100644
--- a/target/executable/falco/.config.vsh.yaml
+++ b/target/executable/falco/.config.vsh.yaml
@@ -320,9 +320,9 @@ build_info:
   output: "target/executable/falco"
   executable: "target/executable/falco/falco"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/executable/falco/falco b/target/executable/falco/falco
index 2f5c2abd..58ba37b0 100755
--- a/target/executable/falco/falco
+++ b/target/executable/falco/falco
@@ -464,9 +464,9 @@ RUN echo "falco: \"$(falco -v | sed -n 's/^falco //p')\"" > /var/software_versio
 
 LABEL org.opencontainers.image.authors="Toni Verbeiren"
 LABEL org.opencontainers.image.description="Companion container for running component falco"
-LABEL org.opencontainers.image.created="2025-06-23T06:29:30Z"
+LABEL org.opencontainers.image.created="2025-06-24T10:40:47Z"
 LABEL org.opencontainers.image.source="https://github.com/smithlabcode/falco"
-LABEL org.opencontainers.image.revision="219ba1d3d0d7fbc66393595534bb6c333b08b238"
+LABEL org.opencontainers.image.revision="f91567d467e6be79a5f71b24a54864ab13bdd278"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER
diff --git a/target/executable/fastp/.config.vsh.yaml b/target/executable/fastp/.config.vsh.yaml
index 4fc78787..ba111bf4 100644
--- a/target/executable/fastp/.config.vsh.yaml
+++ b/target/executable/fastp/.config.vsh.yaml
@@ -1086,9 +1086,9 @@ build_info:
   output: "target/executable/fastp"
   executable: "target/executable/fastp/fastp"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/executable/fastp/fastp b/target/executable/fastp/fastp
index fea6721a..b039d854 100755
--- a/target/executable/fastp/fastp
+++ b/target/executable/fastp/fastp
@@ -452,9 +452,9 @@ RUN fastp --version 2>&1 | sed 's# #: "#;s#$#"#' > /var/software_versions.txt
 
 LABEL org.opencontainers.image.authors="Robrecht Cannoodt"
 LABEL org.opencontainers.image.description="Companion container for running component fastp"
-LABEL org.opencontainers.image.created="2025-06-23T06:29:31Z"
+LABEL org.opencontainers.image.created="2025-06-24T10:40:48Z"
 LABEL org.opencontainers.image.source="https://github.com/OpenGene/fastp"
-LABEL org.opencontainers.image.revision="219ba1d3d0d7fbc66393595534bb6c333b08b238"
+LABEL org.opencontainers.image.revision="f91567d467e6be79a5f71b24a54864ab13bdd278"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER
diff --git a/target/executable/fastqc/.config.vsh.yaml b/target/executable/fastqc/.config.vsh.yaml
index a5e43697..464544fa 100644
--- a/target/executable/fastqc/.config.vsh.yaml
+++ b/target/executable/fastqc/.config.vsh.yaml
@@ -29,6 +29,18 @@ argument_groups:
   description: "At least one of the output options (--html, --zip, --summary, --data)\
     \ must be used.\n"
   arguments:
+  - type: "file"
+    name: "--outdir"
+    description: "Output directory where the results will be saved.\n"
+    info: null
+    example:
+    - "results"
+    must_exist: true
+    create_parent: true
+    required: false
+    direction: "output"
+    multiple: false
+    multiple_sep: ";"
   - type: "file"
     name: "--html"
     description: "Create the HTML report of the results. \n'*' wild card must be provided\
@@ -339,9 +351,9 @@ build_info:
   output: "target/executable/fastqc"
   executable: "target/executable/fastqc/fastqc"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/executable/fastqc/fastqc b/target/executable/fastqc/fastqc
index d7eb2eb0..a06dc1d1 100755
--- a/target/executable/fastqc/fastqc
+++ b/target/executable/fastqc/fastqc
@@ -452,9 +452,9 @@ RUN echo "fastqc: $(fastqc --version | sed -n 's/^FastQC //p')" > /var/software_
 
 LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo"
 LABEL org.opencontainers.image.description="Companion container for running component fastqc"
-LABEL org.opencontainers.image.created="2025-06-23T06:29:32Z"
+LABEL org.opencontainers.image.created="2025-06-24T10:40:49Z"
 LABEL org.opencontainers.image.source="https://github.com/s-andrews/FastQC"
-LABEL org.opencontainers.image.revision="219ba1d3d0d7fbc66393595534bb6c333b08b238"
+LABEL org.opencontainers.image.revision="f91567d467e6be79a5f71b24a54864ab13bdd278"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER
@@ -586,6 +586,11 @@ function ViashHelp {
   echo "    At least one of the output options (--html, --zip, --summary, --data) must"
   echo "    be used."
   echo ""
+  echo "    --outdir"
+  echo "        type: file, output, file must exist"
+  echo "        example: results"
+  echo "        Output directory where the results will be saved."
+  echo ""
   echo "    --html"
   echo "        type: file, multiple values allowed, output, file must exist"
   echo "        example: *.html"
@@ -786,6 +791,17 @@ while [[ $# -gt 0 ]]; do
             fi
             shift 1
             ;;
+        --outdir)
+            [ -n "$VIASH_PAR_OUTDIR" ] && ViashError Bad arguments for option \'--outdir\': \'$VIASH_PAR_OUTDIR\' \& \'$2\' - you should provide exactly one argument for this option. && exit 1
+            VIASH_PAR_OUTDIR="$2"
+            [ $# -lt 2 ] && ViashError Not enough arguments passed to --outdir. Use "--help" to get more information on the parameters. && exit 1
+            shift 2
+            ;;
+        --outdir=*)
+            [ -n "$VIASH_PAR_OUTDIR" ] && ViashError Bad arguments for option \'--outdir=*\': \'$VIASH_PAR_OUTDIR\' \& \'$2\' - you should provide exactly one argument for this option. && exit 1
+            VIASH_PAR_OUTDIR=$(ViashRemoveFlags "$1")
+            shift 1
+            ;;
         --html)
             [ -n "$VIASH_PAR_HTML" ] && ViashError Bad arguments for option \'--html\': \'$VIASH_PAR_HTML\' \& \'$2\' - you should provide exactly one argument for this option. && exit 1
             VIASH_PAR_HTML="$2"
@@ -1341,6 +1357,9 @@ if [[ -n "$VIASH_META_MEMORY_PIB" ]]; then
 fi
 
 # create parent directories of output files, if so desired
+if [ ! -z "$VIASH_PAR_OUTDIR" ] && [ ! -d "$(dirname "$VIASH_PAR_OUTDIR")" ]; then
+  mkdir -p "$(dirname "$VIASH_PAR_OUTDIR")"
+fi
 if [ ! -z "$VIASH_PAR_HTML" ] && [ ! -d "$(dirname "$VIASH_PAR_HTML")" ]; then
   mkdir -p "$(dirname "$VIASH_PAR_HTML")"
 fi
@@ -1377,6 +1396,11 @@ if [ ! -z "$VIASH_PAR_INPUT" ]; then
   done
   VIASH_PAR_INPUT=$(IFS=';' ; echo "${VIASH_TEST_INPUT[*]}")
 fi
+if [ ! -z "$VIASH_PAR_OUTDIR" ]; then
+  VIASH_DIRECTORY_MOUNTS+=( "$(ViashDockerAutodetectMountArg "$VIASH_PAR_OUTDIR")" )
+  VIASH_PAR_OUTDIR=$(ViashDockerAutodetectMount "$VIASH_PAR_OUTDIR")
+  VIASH_CHOWN_VARS+=( "$VIASH_PAR_OUTDIR" )
+fi
 if [ ! -z "$VIASH_PAR_HTML" ]; then
   VIASH_TEST_HTML=()
   IFS=';'
@@ -1509,6 +1533,7 @@ cat > "\$tempscript" << 'VIASHMAIN'
 ## VIASH START
 # The following code has been auto-generated by Viash.
 $( if [ ! -z ${VIASH_PAR_INPUT+x} ]; then echo "${VIASH_PAR_INPUT}" | sed "s#'#'\"'\"'#g;s#.*#par_input='&'#" ; else echo "# par_input="; fi )
+$( if [ ! -z ${VIASH_PAR_OUTDIR+x} ]; then echo "${VIASH_PAR_OUTDIR}" | sed "s#'#'\"'\"'#g;s#.*#par_outdir='&'#" ; else echo "# par_outdir="; fi )
 $( if [ ! -z ${VIASH_PAR_HTML+x} ]; then echo "${VIASH_PAR_HTML}" | sed "s#'#'\"'\"'#g;s#.*#par_html='&'#" ; else echo "# par_html="; fi )
 $( if [ ! -z ${VIASH_PAR_ZIP+x} ]; then echo "${VIASH_PAR_ZIP}" | sed "s#'#'\"'\"'#g;s#.*#par_zip='&'#" ; else echo "# par_zip="; fi )
 $( if [ ! -z ${VIASH_PAR_SUMMARY+x} ]; then echo "${VIASH_PAR_SUMMARY}" | sed "s#'#'\"'\"'#g;s#.*#par_summary='&'#" ; else echo "# par_summary="; fi )
@@ -1549,8 +1574,8 @@ $( if [ ! -z ${VIASH_META_MEMORY_PIB+x} ]; then echo "${VIASH_META_MEMORY_PIB}"
 set -eo pipefail
 
 # Check if both outputs are empty, at least one must be passed.
-if [[ -z "\$par_html" ]] && [[ -z "\$par_zip" ]] && [[ -z "\$par_summary" ]] && [[ -z "\$par_data" ]]; then
-  echo "Error: At least one of the output arguments (--html, --zip, --summary, and --data) must be passed."
+if [[ -z "\$par_outdir" ]] && [[ -z "\$par_html" ]] && [[ -z "\$par_zip" ]] && [[ -z "\$par_summary" ]] && [[ -z "\$par_data" ]]; then
+  echo "Error: At least one of the output arguments (--outdir, --html, --zip, --summary, and --data) must be passed."
   exit 1
 fi
 
@@ -1576,6 +1601,16 @@ function clean_up {
 }
 trap clean_up EXIT
 
+# Set output directory
+if [[ -n "\$par_outdir" ]]; then
+  if [[ ! -d "\$par_outdir" ]]; then
+    mkdir -p "\$par_outdir"
+  fi
+  output_dir="\$par_outdir"
+else
+  output_dir="\$tmpdir"
+fi
+
 # Create input array 
 IFS=";" read -ra input <<< \$par_input
 
@@ -1595,35 +1630,50 @@ fastqc \\
   \${par_quiet:+--quiet} \\
   \${meta_cpus:+--threads "\$meta_cpus"} \\
   \${meta_temp_dir:+--dir "\$meta_temp_dir"} \\
-  --outdir "\${tmpdir}" \\
+  --outdir "\${output_dir}" \\
   "\${input[@]}"
  
+
 # Move output files
 for file in "\${input[@]}"; do
-  # Removes everthing after the first dot of the basename
+  # Removes everything after the first dot of the basename
   sample_name=\$(basename "\${file}" | sed 's/\\..*\$//')
   if [[ -n "\$par_html" ]]; then
-    input_html="\${tmpdir}/\${sample_name}_fastqc.html"
-    html_file="\${par_html//\\*/\$sample_name}"
-    mv "\$input_html" "\$html_file"
+    input_html="\${output_dir}/\${sample_name}_fastqc.html"
+    if [[ ! -f "\$input_html" ]]; then
+      echo "WARNING: HTML file '\$input_html' does not exist"
+    else
+      html_file="\${par_html//\\*/\$sample_name}"
+      cp "\$input_html" "\$html_file"
+    fi
   fi
   if [[ -n "\$par_zip" ]]; then
-    input_zip="\${tmpdir}/\${sample_name}_fastqc.zip"
-    zip_file="\${par_zip//\\*/\$sample_name}"
-    mv "\$input_zip" "\$zip_file"
+    input_zip="\${output_dir}/\${sample_name}_fastqc.zip"
+    if [[ ! -f "\$input_zip" ]]; then
+      echo "WARNING: ZIP file '\$input_zip' does not exist"
+    else
+      zip_file="\${par_zip//\\*/\$sample_name}"
+      cp "\$input_zip" "\$zip_file"
+    fi
   fi
   if [[ -n "\$par_summary" ]]; then
-    summary_file="\${tmpdir}/\${sample_name}_fastqc/summary.txt"
-    new_summary="\${par_summary//\\*/\$sample_name}"
-    mv "\$summary_file" "\$new_summary"
+    summary_file="\${output_dir}/\${sample_name}_fastqc/summary.txt"
+    if [[ ! -f "\$summary_file" ]]; then
+      echo "WARNING: Summary file '\$summary_file' does not exist"
+    else
+      new_summary="\${par_summary//\\*/\$sample_name}"
+      cp "\$summary_file" "\$new_summary"
+    fi
   fi
   if [[ -n "\$par_data" ]]; then
-    data_file="\${tmpdir}/\${sample_name}_fastqc/fastqc_data.txt"
-    new_data="\${par_data//\\*/\$sample_name}"
-    mv "\$data_file" "\$new_data"
+    data_file="\${output_dir}/\${sample_name}_fastqc/fastqc_data.txt"
+    if [[ ! -f "\$data_file" ]]; then
+      echo "WARNING: Data file '\$data_file' does not exist"
+    else
+      new_data="\${par_data//\\*/\$sample_name}"
+      cp "\$data_file" "\$new_data"
+    fi
   fi
-  # Remove the extracted directory
-  rm -r "\${tmpdir}/\${sample_name}_fastqc"
 done
 VIASHMAIN
 bash "\$tempscript" &
@@ -1648,6 +1698,9 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then
     done
     VIASH_PAR_INPUT="$VIASH_TEST_INPUT"
   fi
+  if [ ! -z "$VIASH_PAR_OUTDIR" ]; then
+    VIASH_PAR_OUTDIR=$(ViashDockerStripAutomount "$VIASH_PAR_OUTDIR")
+  fi
   if [ ! -z "$VIASH_PAR_HTML" ]; then
     VIASH_PAR_HTML=$(ViashDockerStripAutomount "$VIASH_PAR_HTML")
   fi
@@ -1685,6 +1738,10 @@ fi
 
 
 # check whether required files exist
+if [ ! -z "$VIASH_PAR_OUTDIR" ] && [ ! -e "$VIASH_PAR_OUTDIR" ]; then
+  ViashError "Output file '$VIASH_PAR_OUTDIR' does not exist."
+  exit 1
+fi
 if [ ! -z "$VIASH_PAR_HTML" ] && ! compgen -G "$VIASH_PAR_HTML" > /dev/null; then
   ViashError "Output file '$VIASH_PAR_HTML' does not exist."
   exit 1
diff --git a/target/executable/featurecounts/.config.vsh.yaml b/target/executable/featurecounts/.config.vsh.yaml
index 9344efaa..1e954829 100644
--- a/target/executable/featurecounts/.config.vsh.yaml
+++ b/target/executable/featurecounts/.config.vsh.yaml
@@ -643,9 +643,9 @@ build_info:
   output: "target/executable/featurecounts"
   executable: "target/executable/featurecounts/featurecounts"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/executable/featurecounts/featurecounts b/target/executable/featurecounts/featurecounts
index 548f81b1..3eaba079 100755
--- a/target/executable/featurecounts/featurecounts
+++ b/target/executable/featurecounts/featurecounts
@@ -452,9 +452,9 @@ RUN featureCounts -v 2>&1 | sed 's/featureCounts v\([0-9.]*\)/featureCounts: \1/
 
 LABEL org.opencontainers.image.authors="Sai Nirmayi Yasa"
 LABEL org.opencontainers.image.description="Companion container for running component featurecounts"
-LABEL org.opencontainers.image.created="2025-06-23T06:29:35Z"
+LABEL org.opencontainers.image.created="2025-06-24T10:40:52Z"
 LABEL org.opencontainers.image.source="https://github.com/ShiLab-Bioinformatics/subread"
-LABEL org.opencontainers.image.revision="219ba1d3d0d7fbc66393595534bb6c333b08b238"
+LABEL org.opencontainers.image.revision="f91567d467e6be79a5f71b24a54864ab13bdd278"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER
diff --git a/target/executable/fq/fq_lint/.config.vsh.yaml b/target/executable/fq/fq_lint/.config.vsh.yaml
index a3069f27..f725e825 100644
--- a/target/executable/fq/fq_lint/.config.vsh.yaml
+++ b/target/executable/fq/fq_lint/.config.vsh.yaml
@@ -225,9 +225,9 @@ build_info:
   output: "target/executable/fq/fq_lint"
   executable: "target/executable/fq/fq_lint/fq_lint"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/executable/fq/fq_lint/fq_lint b/target/executable/fq/fq_lint/fq_lint
index f9629815..4e98be09 100755
--- a/target/executable/fq/fq_lint/fq_lint
+++ b/target/executable/fq/fq_lint/fq_lint
@@ -451,9 +451,9 @@ FROM quay.io/biocontainers/fq:0.12.0--h9ee0642_0
 ENTRYPOINT []
 LABEL org.opencontainers.image.authors="Robrecht Cannoodt, Emma Rousseau"
 LABEL org.opencontainers.image.description="Companion container for running component fq fq_lint"
-LABEL org.opencontainers.image.created="2025-06-23T06:29:23Z"
+LABEL org.opencontainers.image.created="2025-06-24T10:40:40Z"
 LABEL org.opencontainers.image.source="https://github.com/stjude-rust-labs/fq"
-LABEL org.opencontainers.image.revision="219ba1d3d0d7fbc66393595534bb6c333b08b238"
+LABEL org.opencontainers.image.revision="f91567d467e6be79a5f71b24a54864ab13bdd278"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER
diff --git a/target/executable/fq/fq_subsample/.config.vsh.yaml b/target/executable/fq/fq_subsample/.config.vsh.yaml
index 1e74d835..6a8bb3c7 100644
--- a/target/executable/fq/fq_subsample/.config.vsh.yaml
+++ b/target/executable/fq/fq_subsample/.config.vsh.yaml
@@ -210,9 +210,9 @@ build_info:
   output: "target/executable/fq/fq_subsample"
   executable: "target/executable/fq/fq_subsample/fq_subsample"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/executable/fq/fq_subsample/fq_subsample b/target/executable/fq/fq_subsample/fq_subsample
index cc2cc397..ce2fcb3b 100755
--- a/target/executable/fq/fq_subsample/fq_subsample
+++ b/target/executable/fq/fq_subsample/fq_subsample
@@ -451,9 +451,9 @@ FROM quay.io/biocontainers/fq:0.12.0--h9ee0642_0
 ENTRYPOINT []
 LABEL org.opencontainers.image.authors="Robrecht Cannoodt, Emma Rousseau"
 LABEL org.opencontainers.image.description="Companion container for running component fq fq_subsample"
-LABEL org.opencontainers.image.created="2025-06-23T06:29:24Z"
+LABEL org.opencontainers.image.created="2025-06-24T10:40:41Z"
 LABEL org.opencontainers.image.source="https://github.com/stjude-rust-labs/fq"
-LABEL org.opencontainers.image.revision="219ba1d3d0d7fbc66393595534bb6c333b08b238"
+LABEL org.opencontainers.image.revision="f91567d467e6be79a5f71b24a54864ab13bdd278"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER
diff --git a/target/executable/fq_subsample/.config.vsh.yaml b/target/executable/fq_subsample/.config.vsh.yaml
index 4586dd89..94449cca 100644
--- a/target/executable/fq_subsample/.config.vsh.yaml
+++ b/target/executable/fq_subsample/.config.vsh.yaml
@@ -194,9 +194,9 @@ build_info:
   output: "target/executable/fq_subsample"
   executable: "target/executable/fq_subsample/fq_subsample"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/executable/fq_subsample/fq_subsample b/target/executable/fq_subsample/fq_subsample
index 3741c5a4..0234919a 100755
--- a/target/executable/fq_subsample/fq_subsample
+++ b/target/executable/fq_subsample/fq_subsample
@@ -453,9 +453,9 @@ mv target/release/fq /usr/local/bin/ && \
 cd / && rm -rf /fq
 
 LABEL org.opencontainers.image.description="Companion container for running component fq_subsample"
-LABEL org.opencontainers.image.created="2025-06-23T06:29:29Z"
+LABEL org.opencontainers.image.created="2025-06-24T10:40:46Z"
 LABEL org.opencontainers.image.source="https://github.com/stjude-rust-labs/fq"
-LABEL org.opencontainers.image.revision="219ba1d3d0d7fbc66393595534bb6c333b08b238"
+LABEL org.opencontainers.image.revision="f91567d467e6be79a5f71b24a54864ab13bdd278"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER
diff --git a/target/executable/gffread/.config.vsh.yaml b/target/executable/gffread/.config.vsh.yaml
index 9c02cca6..34702c8e 100644
--- a/target/executable/gffread/.config.vsh.yaml
+++ b/target/executable/gffread/.config.vsh.yaml
@@ -683,9 +683,9 @@ build_info:
   output: "target/executable/gffread"
   executable: "target/executable/gffread/gffread"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/executable/gffread/gffread b/target/executable/gffread/gffread
index 9efef075..20525374 100755
--- a/target/executable/gffread/gffread
+++ b/target/executable/gffread/gffread
@@ -452,9 +452,9 @@ RUN echo "gffread: \"$(gffread --version 2>&1)\"" > /var/software_versions.txt
 
 LABEL org.opencontainers.image.authors="Emma Rousseau"
 LABEL org.opencontainers.image.description="Companion container for running component gffread"
-LABEL org.opencontainers.image.created="2025-06-23T06:29:27Z"
+LABEL org.opencontainers.image.created="2025-06-24T10:40:44Z"
 LABEL org.opencontainers.image.source="https://github.com/gpertea/gffread"
-LABEL org.opencontainers.image.revision="219ba1d3d0d7fbc66393595534bb6c333b08b238"
+LABEL org.opencontainers.image.revision="f91567d467e6be79a5f71b24a54864ab13bdd278"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER
diff --git a/target/executable/kallisto/kallisto_index/.config.vsh.yaml b/target/executable/kallisto/kallisto_index/.config.vsh.yaml
index cf722261..720db671 100644
--- a/target/executable/kallisto/kallisto_index/.config.vsh.yaml
+++ b/target/executable/kallisto/kallisto_index/.config.vsh.yaml
@@ -221,9 +221,9 @@ build_info:
   output: "target/executable/kallisto/kallisto_index"
   executable: "target/executable/kallisto/kallisto_index/kallisto_index"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/executable/kallisto/kallisto_index/kallisto_index b/target/executable/kallisto/kallisto_index/kallisto_index
index c236952b..957a5111 100755
--- a/target/executable/kallisto/kallisto_index/kallisto_index
+++ b/target/executable/kallisto/kallisto_index/kallisto_index
@@ -452,9 +452,9 @@ tar -xzf kallisto_linux-v0.50.1.tar.gz && \
 mv kallisto/kallisto /usr/local/bin/
 
 LABEL org.opencontainers.image.description="Companion container for running component kallisto kallisto_index"
-LABEL org.opencontainers.image.created="2025-06-23T06:29:31Z"
+LABEL org.opencontainers.image.created="2025-06-24T10:40:49Z"
 LABEL org.opencontainers.image.source="https://github.com/pachterlab/kallisto"
-LABEL org.opencontainers.image.revision="219ba1d3d0d7fbc66393595534bb6c333b08b238"
+LABEL org.opencontainers.image.revision="f91567d467e6be79a5f71b24a54864ab13bdd278"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER
diff --git a/target/executable/kallisto/kallisto_quant/.config.vsh.yaml b/target/executable/kallisto/kallisto_quant/.config.vsh.yaml
index c2ac7a05..9731d2eb 100644
--- a/target/executable/kallisto/kallisto_quant/.config.vsh.yaml
+++ b/target/executable/kallisto/kallisto_quant/.config.vsh.yaml
@@ -249,9 +249,9 @@ build_info:
   output: "target/executable/kallisto/kallisto_quant"
   executable: "target/executable/kallisto/kallisto_quant/kallisto_quant"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/executable/kallisto/kallisto_quant/kallisto_quant b/target/executable/kallisto/kallisto_quant/kallisto_quant
index 7cb446e8..af9370b3 100755
--- a/target/executable/kallisto/kallisto_quant/kallisto_quant
+++ b/target/executable/kallisto/kallisto_quant/kallisto_quant
@@ -454,9 +454,9 @@ mv kallisto/kallisto /usr/local/bin/
 RUN echo "kallisto: $(kallisto version | sed 's/kallisto, version //')" > /var/software_versions.txt
 
 LABEL org.opencontainers.image.description="Companion container for running component kallisto kallisto_quant"
-LABEL org.opencontainers.image.created="2025-06-23T06:29:32Z"
+LABEL org.opencontainers.image.created="2025-06-24T10:40:49Z"
 LABEL org.opencontainers.image.source="https://github.com/pachterlab/kallisto"
-LABEL org.opencontainers.image.revision="219ba1d3d0d7fbc66393595534bb6c333b08b238"
+LABEL org.opencontainers.image.revision="f91567d467e6be79a5f71b24a54864ab13bdd278"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER
diff --git a/target/executable/lofreq/lofreq_call/.config.vsh.yaml b/target/executable/lofreq/lofreq_call/.config.vsh.yaml
index 18bcc6b5..a6139a2d 100644
--- a/target/executable/lofreq/lofreq_call/.config.vsh.yaml
+++ b/target/executable/lofreq/lofreq_call/.config.vsh.yaml
@@ -502,9 +502,9 @@ build_info:
   output: "target/executable/lofreq/lofreq_call"
   executable: "target/executable/lofreq/lofreq_call/lofreq_call"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/executable/lofreq/lofreq_call/lofreq_call b/target/executable/lofreq/lofreq_call/lofreq_call
index 43dd1598..d92de4f6 100755
--- a/target/executable/lofreq/lofreq_call/lofreq_call
+++ b/target/executable/lofreq/lofreq_call/lofreq_call
@@ -453,9 +453,9 @@ echo "lofreq: $version" > /var/software_versions.txt
 
 LABEL org.opencontainers.image.authors="Kai Waldrant"
 LABEL org.opencontainers.image.description="Companion container for running component lofreq lofreq_call"
-LABEL org.opencontainers.image.created="2025-06-23T06:29:27Z"
+LABEL org.opencontainers.image.created="2025-06-24T10:40:44Z"
 LABEL org.opencontainers.image.source="https://github.com/viash-hub/biobox"
-LABEL org.opencontainers.image.revision="219ba1d3d0d7fbc66393595534bb6c333b08b238"
+LABEL org.opencontainers.image.revision="f91567d467e6be79a5f71b24a54864ab13bdd278"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER
diff --git a/target/executable/lofreq/lofreq_indelqual/.config.vsh.yaml b/target/executable/lofreq/lofreq_indelqual/.config.vsh.yaml
index 9dc20cc0..5b7db39c 100644
--- a/target/executable/lofreq/lofreq_indelqual/.config.vsh.yaml
+++ b/target/executable/lofreq/lofreq_indelqual/.config.vsh.yaml
@@ -210,9 +210,9 @@ build_info:
   output: "target/executable/lofreq/lofreq_indelqual"
   executable: "target/executable/lofreq/lofreq_indelqual/lofreq_indelqual"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/executable/lofreq/lofreq_indelqual/lofreq_indelqual b/target/executable/lofreq/lofreq_indelqual/lofreq_indelqual
index 99e820fa..690e30a9 100755
--- a/target/executable/lofreq/lofreq_indelqual/lofreq_indelqual
+++ b/target/executable/lofreq/lofreq_indelqual/lofreq_indelqual
@@ -453,9 +453,9 @@ echo "lofreq: $version" > /var/software_versions.txt
 
 LABEL org.opencontainers.image.authors="Kai Waldrant"
 LABEL org.opencontainers.image.description="Companion container for running component lofreq lofreq_indelqual"
-LABEL org.opencontainers.image.created="2025-06-23T06:29:26Z"
+LABEL org.opencontainers.image.created="2025-06-24T10:40:44Z"
 LABEL org.opencontainers.image.source="https://github.com/viash-hub/biobox"
-LABEL org.opencontainers.image.revision="219ba1d3d0d7fbc66393595534bb6c333b08b238"
+LABEL org.opencontainers.image.revision="f91567d467e6be79a5f71b24a54864ab13bdd278"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER
diff --git a/target/executable/multiqc/.config.vsh.yaml b/target/executable/multiqc/.config.vsh.yaml
index 02699b93..ecaa7ae7 100644
--- a/target/executable/multiqc/.config.vsh.yaml
+++ b/target/executable/multiqc/.config.vsh.yaml
@@ -459,9 +459,9 @@ build_info:
   output: "target/executable/multiqc"
   executable: "target/executable/multiqc/multiqc"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/executable/multiqc/multiqc b/target/executable/multiqc/multiqc
index efc20192..702cdb9a 100755
--- a/target/executable/multiqc/multiqc
+++ b/target/executable/multiqc/multiqc
@@ -452,9 +452,9 @@ RUN multiqc --version | sed 's/multiqc, version\s\(.*\)/multiqc: "\1"/' > /var/s
 
 LABEL org.opencontainers.image.authors="Dorien Roosen"
 LABEL org.opencontainers.image.description="Companion container for running component multiqc"
-LABEL org.opencontainers.image.created="2025-06-23T06:29:35Z"
+LABEL org.opencontainers.image.created="2025-06-24T10:40:51Z"
 LABEL org.opencontainers.image.source="https://github.com/viash-hub/biobox"
-LABEL org.opencontainers.image.revision="219ba1d3d0d7fbc66393595534bb6c333b08b238"
+LABEL org.opencontainers.image.revision="f91567d467e6be79a5f71b24a54864ab13bdd278"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER
diff --git a/target/executable/nanoplot/.config.vsh.yaml b/target/executable/nanoplot/.config.vsh.yaml
index 2ffb9784..718686a1 100644
--- a/target/executable/nanoplot/.config.vsh.yaml
+++ b/target/executable/nanoplot/.config.vsh.yaml
@@ -495,9 +495,9 @@ build_info:
   output: "target/executable/nanoplot"
   executable: "target/executable/nanoplot/nanoplot"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/executable/nanoplot/nanoplot b/target/executable/nanoplot/nanoplot
index e552d42c..e6c16a39 100755
--- a/target/executable/nanoplot/nanoplot
+++ b/target/executable/nanoplot/nanoplot
@@ -449,9 +449,9 @@ RUN version=$(NanoPlot --version) && \
 echo "$version" > /var/software_versions.txt
 
 LABEL org.opencontainers.image.description="Companion container for running component nanoplot"
-LABEL org.opencontainers.image.created="2025-06-23T06:29:31Z"
+LABEL org.opencontainers.image.created="2025-06-24T10:40:49Z"
 LABEL org.opencontainers.image.source="https://github.com/wdecoster/NanoPlot"
-LABEL org.opencontainers.image.revision="219ba1d3d0d7fbc66393595534bb6c333b08b238"
+LABEL org.opencontainers.image.revision="f91567d467e6be79a5f71b24a54864ab13bdd278"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER
diff --git a/target/executable/pear/.config.vsh.yaml b/target/executable/pear/.config.vsh.yaml
index 8a53efd6..bea3de51 100644
--- a/target/executable/pear/.config.vsh.yaml
+++ b/target/executable/pear/.config.vsh.yaml
@@ -393,9 +393,9 @@ build_info:
   output: "target/executable/pear"
   executable: "target/executable/pear/pear"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/executable/pear/pear b/target/executable/pear/pear
index 905f1d53..9750d217 100755
--- a/target/executable/pear/pear
+++ b/target/executable/pear/pear
@@ -453,9 +453,9 @@ echo "pear: $version" > /var/software_versions.txt
 
 LABEL org.opencontainers.image.authors="Kai Waldrant"
 LABEL org.opencontainers.image.description="Companion container for running component pear"
-LABEL org.opencontainers.image.created="2025-06-23T06:29:30Z"
+LABEL org.opencontainers.image.created="2025-06-24T10:40:47Z"
 LABEL org.opencontainers.image.source="https://github.com/tseemann/PEAR"
-LABEL org.opencontainers.image.revision="219ba1d3d0d7fbc66393595534bb6c333b08b238"
+LABEL org.opencontainers.image.revision="f91567d467e6be79a5f71b24a54864ab13bdd278"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER
diff --git a/target/executable/qualimap/qualimap_rnaseq/.config.vsh.yaml b/target/executable/qualimap/qualimap_rnaseq/.config.vsh.yaml
index d5d49cb4..d3fec859 100644
--- a/target/executable/qualimap/qualimap_rnaseq/.config.vsh.yaml
+++ b/target/executable/qualimap/qualimap_rnaseq/.config.vsh.yaml
@@ -267,9 +267,9 @@ build_info:
   output: "target/executable/qualimap/qualimap_rnaseq"
   executable: "target/executable/qualimap/qualimap_rnaseq/qualimap_rnaseq"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/executable/qualimap/qualimap_rnaseq/qualimap_rnaseq b/target/executable/qualimap/qualimap_rnaseq/qualimap_rnaseq
index 53fd669d..28079da5 100755
--- a/target/executable/qualimap/qualimap_rnaseq/qualimap_rnaseq
+++ b/target/executable/qualimap/qualimap_rnaseq/qualimap_rnaseq
@@ -452,9 +452,9 @@ RUN echo QualiMap: $(qualimap 2>&1 | grep QualiMap | sed 's/^.*QualiMap//') > /v
 
 LABEL org.opencontainers.image.authors="Dorien Roosen"
 LABEL org.opencontainers.image.description="Companion container for running component qualimap qualimap_rnaseq"
-LABEL org.opencontainers.image.created="2025-06-23T06:29:31Z"
+LABEL org.opencontainers.image.created="2025-06-24T10:40:48Z"
 LABEL org.opencontainers.image.source="https://bitbucket.org/kokonech/qualimap/commits/branch/master"
-LABEL org.opencontainers.image.revision="219ba1d3d0d7fbc66393595534bb6c333b08b238"
+LABEL org.opencontainers.image.revision="f91567d467e6be79a5f71b24a54864ab13bdd278"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER
diff --git a/target/executable/rsem/rsem_calculate_expression/.config.vsh.yaml b/target/executable/rsem/rsem_calculate_expression/.config.vsh.yaml
index a95f4848..d7b74240 100644
--- a/target/executable/rsem/rsem_calculate_expression/.config.vsh.yaml
+++ b/target/executable/rsem/rsem_calculate_expression/.config.vsh.yaml
@@ -855,9 +855,9 @@ build_info:
   output: "target/executable/rsem/rsem_calculate_expression"
   executable: "target/executable/rsem/rsem_calculate_expression/rsem_calculate_expression"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/executable/rsem/rsem_calculate_expression/rsem_calculate_expression b/target/executable/rsem/rsem_calculate_expression/rsem_calculate_expression
index cb1def41..a40961dd 100755
--- a/target/executable/rsem/rsem_calculate_expression/rsem_calculate_expression
+++ b/target/executable/rsem/rsem_calculate_expression/rsem_calculate_expression
@@ -470,9 +470,9 @@ echo "bowtie: `bowtie --version | grep -oP 'bowtie-align-s version \K\d+\.\d+\.\
 echo "HISAT2: `hisat2 --version | grep -oP 'hisat2-align-s version \K\d+\.\d+\.\d+'`" >> /var/software_versions.txt
 
 LABEL org.opencontainers.image.description="Companion container for running component rsem rsem_calculate_expression"
-LABEL org.opencontainers.image.created="2025-06-23T06:29:28Z"
+LABEL org.opencontainers.image.created="2025-06-24T10:40:46Z"
 LABEL org.opencontainers.image.source="https://github.com/deweylab/RSEM"
-LABEL org.opencontainers.image.revision="219ba1d3d0d7fbc66393595534bb6c333b08b238"
+LABEL org.opencontainers.image.revision="f91567d467e6be79a5f71b24a54864ab13bdd278"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER
diff --git a/target/executable/rsem/rsem_prepare_reference/.config.vsh.yaml b/target/executable/rsem/rsem_prepare_reference/.config.vsh.yaml
index e9f61686..d9a830c2 100644
--- a/target/executable/rsem/rsem_prepare_reference/.config.vsh.yaml
+++ b/target/executable/rsem/rsem_prepare_reference/.config.vsh.yaml
@@ -414,9 +414,9 @@ build_info:
   output: "target/executable/rsem/rsem_prepare_reference"
   executable: "target/executable/rsem/rsem_prepare_reference/rsem_prepare_reference"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/executable/rsem/rsem_prepare_reference/rsem_prepare_reference b/target/executable/rsem/rsem_prepare_reference/rsem_prepare_reference
index 32de20d3..e05210b8 100755
--- a/target/executable/rsem/rsem_prepare_reference/rsem_prepare_reference
+++ b/target/executable/rsem/rsem_prepare_reference/rsem_prepare_reference
@@ -494,9 +494,9 @@ echo "HISAT2: `hisat2 --version | grep -oP 'hisat2-align-s version \K\d+\.\d+\.\
 
 LABEL org.opencontainers.image.authors="Sai Nirmayi Yasa"
 LABEL org.opencontainers.image.description="Companion container for running component rsem rsem_prepare_reference"
-LABEL org.opencontainers.image.created="2025-06-23T06:29:29Z"
+LABEL org.opencontainers.image.created="2025-06-24T10:40:46Z"
 LABEL org.opencontainers.image.source="https://github.com/deweylab/RSEM"
-LABEL org.opencontainers.image.revision="219ba1d3d0d7fbc66393595534bb6c333b08b238"
+LABEL org.opencontainers.image.revision="f91567d467e6be79a5f71b24a54864ab13bdd278"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER
diff --git a/target/executable/rseqc/rseqc_bamstat/.config.vsh.yaml b/target/executable/rseqc/rseqc_bamstat/.config.vsh.yaml
index 2feff5e2..9f9b2de2 100644
--- a/target/executable/rseqc/rseqc_bamstat/.config.vsh.yaml
+++ b/target/executable/rseqc/rseqc_bamstat/.config.vsh.yaml
@@ -173,9 +173,9 @@ build_info:
   output: "target/executable/rseqc/rseqc_bamstat"
   executable: "target/executable/rseqc/rseqc_bamstat/rseqc_bamstat"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/executable/rseqc/rseqc_bamstat/rseqc_bamstat b/target/executable/rseqc/rseqc_bamstat/rseqc_bamstat
index 5267ac60..07d1368f 100755
--- a/target/executable/rseqc/rseqc_bamstat/rseqc_bamstat
+++ b/target/executable/rseqc/rseqc_bamstat/rseqc_bamstat
@@ -455,9 +455,9 @@ RUN echo "RSeQC bam_stat.py: $(bam_stat.py --version | cut -d' ' -f2-)" > /var/s
 
 LABEL org.opencontainers.image.authors="Emma Rousseau"
 LABEL org.opencontainers.image.description="Companion container for running component rseqc rseqc_bamstat"
-LABEL org.opencontainers.image.created="2025-06-23T06:29:28Z"
+LABEL org.opencontainers.image.created="2025-06-24T10:40:45Z"
 LABEL org.opencontainers.image.source="https://github.com/MonashBioinformaticsPlatform/RSeQC"
-LABEL org.opencontainers.image.revision="219ba1d3d0d7fbc66393595534bb6c333b08b238"
+LABEL org.opencontainers.image.revision="f91567d467e6be79a5f71b24a54864ab13bdd278"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER
diff --git a/target/executable/rseqc/rseqc_inferexperiment/.config.vsh.yaml b/target/executable/rseqc/rseqc_inferexperiment/.config.vsh.yaml
index 58d3cab7..93ca1cfe 100644
--- a/target/executable/rseqc/rseqc_inferexperiment/.config.vsh.yaml
+++ b/target/executable/rseqc/rseqc_inferexperiment/.config.vsh.yaml
@@ -199,9 +199,9 @@ build_info:
   output: "target/executable/rseqc/rseqc_inferexperiment"
   executable: "target/executable/rseqc/rseqc_inferexperiment/rseqc_inferexperiment"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/executable/rseqc/rseqc_inferexperiment/rseqc_inferexperiment b/target/executable/rseqc/rseqc_inferexperiment/rseqc_inferexperiment
index 4e553272..9bcc4ce0 100755
--- a/target/executable/rseqc/rseqc_inferexperiment/rseqc_inferexperiment
+++ b/target/executable/rseqc/rseqc_inferexperiment/rseqc_inferexperiment
@@ -455,9 +455,9 @@ RUN echo "RSeQC - infer_experiment.py: $(infer_experiment.py --version | cut -d'
 
 LABEL org.opencontainers.image.authors="Emma Rousseau"
 LABEL org.opencontainers.image.description="Companion container for running component rseqc rseqc_inferexperiment"
-LABEL org.opencontainers.image.created="2025-06-23T06:29:27Z"
+LABEL org.opencontainers.image.created="2025-06-24T10:40:44Z"
 LABEL org.opencontainers.image.source="https://github.com/MonashBioinformaticsPlatform/RSeQC"
-LABEL org.opencontainers.image.revision="219ba1d3d0d7fbc66393595534bb6c333b08b238"
+LABEL org.opencontainers.image.revision="f91567d467e6be79a5f71b24a54864ab13bdd278"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER
diff --git a/target/executable/rseqc/rseqc_inner_distance/.config.vsh.yaml b/target/executable/rseqc/rseqc_inner_distance/.config.vsh.yaml
index e5dd0b85..5e539bb0 100644
--- a/target/executable/rseqc/rseqc_inner_distance/.config.vsh.yaml
+++ b/target/executable/rseqc/rseqc_inner_distance/.config.vsh.yaml
@@ -292,9 +292,9 @@ build_info:
   output: "target/executable/rseqc/rseqc_inner_distance"
   executable: "target/executable/rseqc/rseqc_inner_distance/rseqc_inner_distance"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/executable/rseqc/rseqc_inner_distance/rseqc_inner_distance b/target/executable/rseqc/rseqc_inner_distance/rseqc_inner_distance
index 45aa0b85..7e6919d8 100755
--- a/target/executable/rseqc/rseqc_inner_distance/rseqc_inner_distance
+++ b/target/executable/rseqc/rseqc_inner_distance/rseqc_inner_distance
@@ -459,9 +459,9 @@ RUN echo "RSeQC - inner_distance.py: $(inner_distance.py --version | cut -d' ' -
 
 LABEL org.opencontainers.image.authors="Emma Rousseau"
 LABEL org.opencontainers.image.description="Companion container for running component rseqc rseqc_inner_distance"
-LABEL org.opencontainers.image.created="2025-06-23T06:29:28Z"
+LABEL org.opencontainers.image.created="2025-06-24T10:40:45Z"
 LABEL org.opencontainers.image.source="https://github.com/MonashBioinformaticsPlatform/RSeQC"
-LABEL org.opencontainers.image.revision="219ba1d3d0d7fbc66393595534bb6c333b08b238"
+LABEL org.opencontainers.image.revision="f91567d467e6be79a5f71b24a54864ab13bdd278"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER
diff --git a/target/executable/salmon/salmon_index/.config.vsh.yaml b/target/executable/salmon/salmon_index/.config.vsh.yaml
index cd7cefad..3151c6dc 100644
--- a/target/executable/salmon/salmon_index/.config.vsh.yaml
+++ b/target/executable/salmon/salmon_index/.config.vsh.yaml
@@ -275,9 +275,9 @@ build_info:
   output: "target/executable/salmon/salmon_index"
   executable: "target/executable/salmon/salmon_index/salmon_index"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/executable/salmon/salmon_index/salmon_index b/target/executable/salmon/salmon_index/salmon_index
index d7d34919..fa1bfcd5 100755
--- a/target/executable/salmon/salmon_index/salmon_index
+++ b/target/executable/salmon/salmon_index/salmon_index
@@ -452,9 +452,9 @@ RUN salmon index -v 2>&1 | sed 's/salmon \([0-9.]*\)/salmon: \1/' > /var/softwar
 
 LABEL org.opencontainers.image.authors="Sai Nirmayi Yasa"
 LABEL org.opencontainers.image.description="Companion container for running component salmon salmon_index"
-LABEL org.opencontainers.image.created="2025-06-23T06:29:29Z"
+LABEL org.opencontainers.image.created="2025-06-24T10:40:47Z"
 LABEL org.opencontainers.image.source="https://github.com/COMBINE-lab/salmon"
-LABEL org.opencontainers.image.revision="219ba1d3d0d7fbc66393595534bb6c333b08b238"
+LABEL org.opencontainers.image.revision="f91567d467e6be79a5f71b24a54864ab13bdd278"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER
diff --git a/target/executable/salmon/salmon_quant/.config.vsh.yaml b/target/executable/salmon/salmon_quant/.config.vsh.yaml
index 22c307b5..b935219d 100644
--- a/target/executable/salmon/salmon_quant/.config.vsh.yaml
+++ b/target/executable/salmon/salmon_quant/.config.vsh.yaml
@@ -1171,9 +1171,9 @@ build_info:
   output: "target/executable/salmon/salmon_quant"
   executable: "target/executable/salmon/salmon_quant/salmon_quant"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/executable/salmon/salmon_quant/salmon_quant b/target/executable/salmon/salmon_quant/salmon_quant
index e55812ad..4eaabbf5 100755
--- a/target/executable/salmon/salmon_quant/salmon_quant
+++ b/target/executable/salmon/salmon_quant/salmon_quant
@@ -452,9 +452,9 @@ RUN salmon index -v 2>&1 | sed 's/salmon \([0-9.]*\)/salmon: \1/' > /var/softwar
 
 LABEL org.opencontainers.image.authors="Sai Nirmayi Yasa"
 LABEL org.opencontainers.image.description="Companion container for running component salmon salmon_quant"
-LABEL org.opencontainers.image.created="2025-06-23T06:29:29Z"
+LABEL org.opencontainers.image.created="2025-06-24T10:40:46Z"
 LABEL org.opencontainers.image.source="https://github.com/COMBINE-lab/salmon"
-LABEL org.opencontainers.image.revision="219ba1d3d0d7fbc66393595534bb6c333b08b238"
+LABEL org.opencontainers.image.revision="f91567d467e6be79a5f71b24a54864ab13bdd278"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER
diff --git a/target/executable/samtools/samtools_collate/.config.vsh.yaml b/target/executable/samtools/samtools_collate/.config.vsh.yaml
index 603c7bf3..696d3729 100644
--- a/target/executable/samtools/samtools_collate/.config.vsh.yaml
+++ b/target/executable/samtools/samtools_collate/.config.vsh.yaml
@@ -262,9 +262,9 @@ build_info:
   output: "target/executable/samtools/samtools_collate"
   executable: "target/executable/samtools/samtools_collate/samtools_collate"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/executable/samtools/samtools_collate/samtools_collate b/target/executable/samtools/samtools_collate/samtools_collate
index 64f212d7..68c70046 100755
--- a/target/executable/samtools/samtools_collate/samtools_collate
+++ b/target/executable/samtools/samtools_collate/samtools_collate
@@ -453,9 +453,9 @@ sed 's#Using ##;s# \([0-9\.]*\)$#: \1#' > /var/software_versions.txt
 
 LABEL org.opencontainers.image.authors="Emma Rousseau"
 LABEL org.opencontainers.image.description="Companion container for running component samtools samtools_collate"
-LABEL org.opencontainers.image.created="2025-06-23T06:29:32Z"
+LABEL org.opencontainers.image.created="2025-06-24T10:40:49Z"
 LABEL org.opencontainers.image.source="https://github.com/samtools/samtools"
-LABEL org.opencontainers.image.revision="219ba1d3d0d7fbc66393595534bb6c333b08b238"
+LABEL org.opencontainers.image.revision="f91567d467e6be79a5f71b24a54864ab13bdd278"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER
diff --git a/target/executable/samtools/samtools_faidx/.config.vsh.yaml b/target/executable/samtools/samtools_faidx/.config.vsh.yaml
index ee2ff4d1..354e77e8 100644
--- a/target/executable/samtools/samtools_faidx/.config.vsh.yaml
+++ b/target/executable/samtools/samtools_faidx/.config.vsh.yaml
@@ -241,9 +241,9 @@ build_info:
   output: "target/executable/samtools/samtools_faidx"
   executable: "target/executable/samtools/samtools_faidx/samtools_faidx"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/executable/samtools/samtools_faidx/samtools_faidx b/target/executable/samtools/samtools_faidx/samtools_faidx
index 8835aa22..6f6c7683 100755
--- a/target/executable/samtools/samtools_faidx/samtools_faidx
+++ b/target/executable/samtools/samtools_faidx/samtools_faidx
@@ -453,9 +453,9 @@ sed 's#Using ##;s# \([0-9\.]*\)$#: \1#' > /var/software_versions.txt
 
 LABEL org.opencontainers.image.authors="Emma Rousseau"
 LABEL org.opencontainers.image.description="Companion container for running component samtools samtools_faidx"
-LABEL org.opencontainers.image.created="2025-06-23T06:29:32Z"
+LABEL org.opencontainers.image.created="2025-06-24T10:40:49Z"
 LABEL org.opencontainers.image.source="https://github.com/samtools/samtools"
-LABEL org.opencontainers.image.revision="219ba1d3d0d7fbc66393595534bb6c333b08b238"
+LABEL org.opencontainers.image.revision="f91567d467e6be79a5f71b24a54864ab13bdd278"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER
diff --git a/target/executable/samtools/samtools_fasta/.config.vsh.yaml b/target/executable/samtools/samtools_fasta/.config.vsh.yaml
index 97c1d55d..01587145 100644
--- a/target/executable/samtools/samtools_fasta/.config.vsh.yaml
+++ b/target/executable/samtools/samtools_fasta/.config.vsh.yaml
@@ -431,9 +431,9 @@ build_info:
   output: "target/executable/samtools/samtools_fasta"
   executable: "target/executable/samtools/samtools_fasta/samtools_fasta"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/executable/samtools/samtools_fasta/samtools_fasta b/target/executable/samtools/samtools_fasta/samtools_fasta
index b0c64576..68a8e1b4 100755
--- a/target/executable/samtools/samtools_fasta/samtools_fasta
+++ b/target/executable/samtools/samtools_fasta/samtools_fasta
@@ -453,9 +453,9 @@ sed 's#Using ##;s# \([0-9\.]*\)$#: \1#' > /var/software_versions.txt
 
 LABEL org.opencontainers.image.authors="Emma Rousseau"
 LABEL org.opencontainers.image.description="Companion container for running component samtools samtools_fasta"
-LABEL org.opencontainers.image.created="2025-06-23T06:29:33Z"
+LABEL org.opencontainers.image.created="2025-06-24T10:40:50Z"
 LABEL org.opencontainers.image.source="https://github.com/samtools/samtools"
-LABEL org.opencontainers.image.revision="219ba1d3d0d7fbc66393595534bb6c333b08b238"
+LABEL org.opencontainers.image.revision="f91567d467e6be79a5f71b24a54864ab13bdd278"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER
diff --git a/target/executable/samtools/samtools_fastq/.config.vsh.yaml b/target/executable/samtools/samtools_fastq/.config.vsh.yaml
index 655f9b2f..c3a14984 100644
--- a/target/executable/samtools/samtools_fastq/.config.vsh.yaml
+++ b/target/executable/samtools/samtools_fastq/.config.vsh.yaml
@@ -431,9 +431,9 @@ build_info:
   output: "target/executable/samtools/samtools_fastq"
   executable: "target/executable/samtools/samtools_fastq/samtools_fastq"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/executable/samtools/samtools_fastq/samtools_fastq b/target/executable/samtools/samtools_fastq/samtools_fastq
index 2df0bb2b..292c2628 100755
--- a/target/executable/samtools/samtools_fastq/samtools_fastq
+++ b/target/executable/samtools/samtools_fastq/samtools_fastq
@@ -453,9 +453,9 @@ sed 's#Using ##;s# \([0-9\.]*\)$#: \1#' > /var/software_versions.txt
 
 LABEL org.opencontainers.image.authors="Emma Rousseau"
 LABEL org.opencontainers.image.description="Companion container for running component samtools samtools_fastq"
-LABEL org.opencontainers.image.created="2025-06-23T06:29:33Z"
+LABEL org.opencontainers.image.created="2025-06-24T10:40:50Z"
 LABEL org.opencontainers.image.source="https://github.com/samtools/samtools"
-LABEL org.opencontainers.image.revision="219ba1d3d0d7fbc66393595534bb6c333b08b238"
+LABEL org.opencontainers.image.revision="f91567d467e6be79a5f71b24a54864ab13bdd278"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER
diff --git a/target/executable/samtools/samtools_flagstat/.config.vsh.yaml b/target/executable/samtools/samtools_flagstat/.config.vsh.yaml
index 4cc3aef1..725698da 100644
--- a/target/executable/samtools/samtools_flagstat/.config.vsh.yaml
+++ b/target/executable/samtools/samtools_flagstat/.config.vsh.yaml
@@ -171,9 +171,9 @@ build_info:
   output: "target/executable/samtools/samtools_flagstat"
   executable: "target/executable/samtools/samtools_flagstat/samtools_flagstat"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/executable/samtools/samtools_flagstat/samtools_flagstat b/target/executable/samtools/samtools_flagstat/samtools_flagstat
index 2531e472..768a4efb 100755
--- a/target/executable/samtools/samtools_flagstat/samtools_flagstat
+++ b/target/executable/samtools/samtools_flagstat/samtools_flagstat
@@ -453,9 +453,9 @@ sed 's#Using ##;s# \([0-9\.]*\)$#: \1#' > /var/software_versions.txt
 
 LABEL org.opencontainers.image.authors="Emma Rousseau"
 LABEL org.opencontainers.image.description="Companion container for running component samtools samtools_flagstat"
-LABEL org.opencontainers.image.created="2025-06-23T06:29:34Z"
+LABEL org.opencontainers.image.created="2025-06-24T10:40:51Z"
 LABEL org.opencontainers.image.source="https://github.com/samtools/samtools"
-LABEL org.opencontainers.image.revision="219ba1d3d0d7fbc66393595534bb6c333b08b238"
+LABEL org.opencontainers.image.revision="f91567d467e6be79a5f71b24a54864ab13bdd278"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER
diff --git a/target/executable/samtools/samtools_idxstats/.config.vsh.yaml b/target/executable/samtools/samtools_idxstats/.config.vsh.yaml
index f31d1fce..212d79bb 100644
--- a/target/executable/samtools/samtools_idxstats/.config.vsh.yaml
+++ b/target/executable/samtools/samtools_idxstats/.config.vsh.yaml
@@ -181,9 +181,9 @@ build_info:
   output: "target/executable/samtools/samtools_idxstats"
   executable: "target/executable/samtools/samtools_idxstats/samtools_idxstats"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/executable/samtools/samtools_idxstats/samtools_idxstats b/target/executable/samtools/samtools_idxstats/samtools_idxstats
index ee33a863..b08cacd9 100755
--- a/target/executable/samtools/samtools_idxstats/samtools_idxstats
+++ b/target/executable/samtools/samtools_idxstats/samtools_idxstats
@@ -453,9 +453,9 @@ sed 's#Using ##;s# \([0-9\.]*\)$#: \1#' > /var/software_versions.txt
 
 LABEL org.opencontainers.image.authors="Emma Rousseau"
 LABEL org.opencontainers.image.description="Companion container for running component samtools samtools_idxstats"
-LABEL org.opencontainers.image.created="2025-06-23T06:29:33Z"
+LABEL org.opencontainers.image.created="2025-06-24T10:40:50Z"
 LABEL org.opencontainers.image.source="https://github.com/samtools/samtools"
-LABEL org.opencontainers.image.revision="219ba1d3d0d7fbc66393595534bb6c333b08b238"
+LABEL org.opencontainers.image.revision="f91567d467e6be79a5f71b24a54864ab13bdd278"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER
diff --git a/target/executable/samtools/samtools_index/.config.vsh.yaml b/target/executable/samtools/samtools_index/.config.vsh.yaml
index c0ef3951..863edc26 100644
--- a/target/executable/samtools/samtools_index/.config.vsh.yaml
+++ b/target/executable/samtools/samtools_index/.config.vsh.yaml
@@ -187,9 +187,9 @@ build_info:
   output: "target/executable/samtools/samtools_index"
   executable: "target/executable/samtools/samtools_index/samtools_index"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/executable/samtools/samtools_index/samtools_index b/target/executable/samtools/samtools_index/samtools_index
index d6ee734d..2b18311a 100755
--- a/target/executable/samtools/samtools_index/samtools_index
+++ b/target/executable/samtools/samtools_index/samtools_index
@@ -453,9 +453,9 @@ sed 's#Using ##;s# \([0-9\.]*\)$#: \1#' > /var/software_versions.txt
 
 LABEL org.opencontainers.image.authors="Emma Rousseau"
 LABEL org.opencontainers.image.description="Companion container for running component samtools samtools_index"
-LABEL org.opencontainers.image.created="2025-06-23T06:29:34Z"
+LABEL org.opencontainers.image.created="2025-06-24T10:40:51Z"
 LABEL org.opencontainers.image.source="https://github.com/samtools/samtools"
-LABEL org.opencontainers.image.revision="219ba1d3d0d7fbc66393595534bb6c333b08b238"
+LABEL org.opencontainers.image.revision="f91567d467e6be79a5f71b24a54864ab13bdd278"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER
diff --git a/target/executable/samtools/samtools_sort/.config.vsh.yaml b/target/executable/samtools/samtools_sort/.config.vsh.yaml
index 27a77160..e5e1c0ab 100644
--- a/target/executable/samtools/samtools_sort/.config.vsh.yaml
+++ b/target/executable/samtools/samtools_sort/.config.vsh.yaml
@@ -330,9 +330,9 @@ build_info:
   output: "target/executable/samtools/samtools_sort"
   executable: "target/executable/samtools/samtools_sort/samtools_sort"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/executable/samtools/samtools_sort/samtools_sort b/target/executable/samtools/samtools_sort/samtools_sort
index 71987026..86136688 100755
--- a/target/executable/samtools/samtools_sort/samtools_sort
+++ b/target/executable/samtools/samtools_sort/samtools_sort
@@ -453,9 +453,9 @@ sed 's#Using ##;s# \([0-9\.]*\)$#: \1#' > /var/software_versions.txt
 
 LABEL org.opencontainers.image.authors="Emma Rousseau"
 LABEL org.opencontainers.image.description="Companion container for running component samtools samtools_sort"
-LABEL org.opencontainers.image.created="2025-06-23T06:29:32Z"
+LABEL org.opencontainers.image.created="2025-06-24T10:40:49Z"
 LABEL org.opencontainers.image.source="https://github.com/samtools/samtools"
-LABEL org.opencontainers.image.revision="219ba1d3d0d7fbc66393595534bb6c333b08b238"
+LABEL org.opencontainers.image.revision="f91567d467e6be79a5f71b24a54864ab13bdd278"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER
diff --git a/target/executable/samtools/samtools_stats/.config.vsh.yaml b/target/executable/samtools/samtools_stats/.config.vsh.yaml
index 7f03fac6..d529998e 100644
--- a/target/executable/samtools/samtools_stats/.config.vsh.yaml
+++ b/target/executable/samtools/samtools_stats/.config.vsh.yaml
@@ -399,9 +399,9 @@ build_info:
   output: "target/executable/samtools/samtools_stats"
   executable: "target/executable/samtools/samtools_stats/samtools_stats"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/executable/samtools/samtools_stats/samtools_stats b/target/executable/samtools/samtools_stats/samtools_stats
index ec958894..9e4e07da 100755
--- a/target/executable/samtools/samtools_stats/samtools_stats
+++ b/target/executable/samtools/samtools_stats/samtools_stats
@@ -453,9 +453,9 @@ sed 's#Using ##;s# \([0-9\.]*\)$#: \1#' > /var/software_versions.txt
 
 LABEL org.opencontainers.image.authors="Emma Rousseau"
 LABEL org.opencontainers.image.description="Companion container for running component samtools samtools_stats"
-LABEL org.opencontainers.image.created="2025-06-23T06:29:34Z"
+LABEL org.opencontainers.image.created="2025-06-24T10:40:51Z"
 LABEL org.opencontainers.image.source="https://github.com/samtools/samtools"
-LABEL org.opencontainers.image.revision="219ba1d3d0d7fbc66393595534bb6c333b08b238"
+LABEL org.opencontainers.image.revision="f91567d467e6be79a5f71b24a54864ab13bdd278"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER
diff --git a/target/executable/samtools/samtools_view/.config.vsh.yaml b/target/executable/samtools/samtools_view/.config.vsh.yaml
index 92e15922..db338d66 100644
--- a/target/executable/samtools/samtools_view/.config.vsh.yaml
+++ b/target/executable/samtools/samtools_view/.config.vsh.yaml
@@ -663,9 +663,9 @@ build_info:
   output: "target/executable/samtools/samtools_view"
   executable: "target/executable/samtools/samtools_view/samtools_view"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/executable/samtools/samtools_view/samtools_view b/target/executable/samtools/samtools_view/samtools_view
index ee10644c..ec5c24f1 100755
--- a/target/executable/samtools/samtools_view/samtools_view
+++ b/target/executable/samtools/samtools_view/samtools_view
@@ -453,9 +453,9 @@ sed 's#Using ##;s# \([0-9\.]*\)$#: \1#' > /var/software_versions.txt
 
 LABEL org.opencontainers.image.authors="Emma Rousseau"
 LABEL org.opencontainers.image.description="Companion container for running component samtools samtools_view"
-LABEL org.opencontainers.image.created="2025-06-23T06:29:33Z"
+LABEL org.opencontainers.image.created="2025-06-24T10:40:50Z"
 LABEL org.opencontainers.image.source="https://github.com/samtools/samtools"
-LABEL org.opencontainers.image.revision="219ba1d3d0d7fbc66393595534bb6c333b08b238"
+LABEL org.opencontainers.image.revision="f91567d467e6be79a5f71b24a54864ab13bdd278"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER
diff --git a/target/executable/seqtk/seqtk_sample/.config.vsh.yaml b/target/executable/seqtk/seqtk_sample/.config.vsh.yaml
index 520ad207..625705e6 100644
--- a/target/executable/seqtk/seqtk_sample/.config.vsh.yaml
+++ b/target/executable/seqtk/seqtk_sample/.config.vsh.yaml
@@ -176,9 +176,9 @@ build_info:
   output: "target/executable/seqtk/seqtk_sample"
   executable: "target/executable/seqtk/seqtk_sample/seqtk_sample"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/executable/seqtk/seqtk_sample/seqtk_sample b/target/executable/seqtk/seqtk_sample/seqtk_sample
index 33d81b54..1c2971fb 100755
--- a/target/executable/seqtk/seqtk_sample/seqtk_sample
+++ b/target/executable/seqtk/seqtk_sample/seqtk_sample
@@ -450,9 +450,9 @@ FROM quay.io/biocontainers/seqtk:1.4--he4a0461_2
 ENTRYPOINT []
 LABEL org.opencontainers.image.authors="Jakub Majercik"
 LABEL org.opencontainers.image.description="Companion container for running component seqtk seqtk_sample"
-LABEL org.opencontainers.image.created="2025-06-23T06:29:31Z"
+LABEL org.opencontainers.image.created="2025-06-24T10:40:48Z"
 LABEL org.opencontainers.image.source="https://github.com/lh3/seqtk/tree/v1.4"
-LABEL org.opencontainers.image.revision="219ba1d3d0d7fbc66393595534bb6c333b08b238"
+LABEL org.opencontainers.image.revision="f91567d467e6be79a5f71b24a54864ab13bdd278"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER
diff --git a/target/executable/seqtk/seqtk_subseq/.config.vsh.yaml b/target/executable/seqtk/seqtk_subseq/.config.vsh.yaml
index d32051c9..71685bc8 100644
--- a/target/executable/seqtk/seqtk_subseq/.config.vsh.yaml
+++ b/target/executable/seqtk/seqtk_subseq/.config.vsh.yaml
@@ -195,9 +195,9 @@ build_info:
   output: "target/executable/seqtk/seqtk_subseq"
   executable: "target/executable/seqtk/seqtk_subseq/seqtk_subseq"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/executable/seqtk/seqtk_subseq/seqtk_subseq b/target/executable/seqtk/seqtk_subseq/seqtk_subseq
index 1427f984..8fcb9e7e 100755
--- a/target/executable/seqtk/seqtk_subseq/seqtk_subseq
+++ b/target/executable/seqtk/seqtk_subseq/seqtk_subseq
@@ -452,9 +452,9 @@ RUN echo $(echo $(seqtk 2>&1) | sed -n 's/.*\(Version: [^ ]*\).*/\1/p') > /var/s
 
 LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo"
 LABEL org.opencontainers.image.description="Companion container for running component seqtk seqtk_subseq"
-LABEL org.opencontainers.image.created="2025-06-23T06:29:31Z"
+LABEL org.opencontainers.image.created="2025-06-24T10:40:48Z"
 LABEL org.opencontainers.image.source="https://github.com/lh3/seqtk/tree/v1.4"
-LABEL org.opencontainers.image.revision="219ba1d3d0d7fbc66393595534bb6c333b08b238"
+LABEL org.opencontainers.image.revision="f91567d467e6be79a5f71b24a54864ab13bdd278"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER
diff --git a/target/executable/sgdemux/.config.vsh.yaml b/target/executable/sgdemux/.config.vsh.yaml
index 2ba46ef8..10247cbc 100644
--- a/target/executable/sgdemux/.config.vsh.yaml
+++ b/target/executable/sgdemux/.config.vsh.yaml
@@ -432,9 +432,9 @@ build_info:
   output: "target/executable/sgdemux"
   executable: "target/executable/sgdemux/sgdemux"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/executable/sgdemux/sgdemux b/target/executable/sgdemux/sgdemux
index 24528408..b586e2f3 100755
--- a/target/executable/sgdemux/sgdemux
+++ b/target/executable/sgdemux/sgdemux
@@ -457,9 +457,9 @@ echo "sgdemux: $(sgdemux --version | cut -d' ' -f2)" > /var/software_versions.tx
 
 LABEL org.opencontainers.image.authors="Dries Schaumont"
 LABEL org.opencontainers.image.description="Companion container for running component sgdemux"
-LABEL org.opencontainers.image.created="2025-06-23T06:29:26Z"
+LABEL org.opencontainers.image.created="2025-06-24T10:40:43Z"
 LABEL org.opencontainers.image.source="https://github.com/Singular-Genomics/singular-demux"
-LABEL org.opencontainers.image.revision="219ba1d3d0d7fbc66393595534bb6c333b08b238"
+LABEL org.opencontainers.image.revision="f91567d467e6be79a5f71b24a54864ab13bdd278"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER
diff --git a/target/executable/snpeff/.config.vsh.yaml b/target/executable/snpeff/.config.vsh.yaml
index a065327e..c6e46eea 100644
--- a/target/executable/snpeff/.config.vsh.yaml
+++ b/target/executable/snpeff/.config.vsh.yaml
@@ -631,9 +631,9 @@ build_info:
   output: "target/executable/snpeff"
   executable: "target/executable/snpeff/snpeff"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/executable/snpeff/snpeff b/target/executable/snpeff/snpeff
index ee5a385f..797d7819 100755
--- a/target/executable/snpeff/snpeff
+++ b/target/executable/snpeff/snpeff
@@ -450,9 +450,9 @@ version_trimmed=$(echo "$version" | awk '{print $1, $2}') && \
 echo "$version_trimmed" > /var/software_versions.txt
 
 LABEL org.opencontainers.image.description="Companion container for running component snpeff"
-LABEL org.opencontainers.image.created="2025-06-23T06:29:30Z"
+LABEL org.opencontainers.image.created="2025-06-24T10:40:47Z"
 LABEL org.opencontainers.image.source="https://github.com/pcingola/SnpEff"
-LABEL org.opencontainers.image.revision="219ba1d3d0d7fbc66393595534bb6c333b08b238"
+LABEL org.opencontainers.image.revision="f91567d467e6be79a5f71b24a54864ab13bdd278"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER
diff --git a/target/executable/sortmerna/.config.vsh.yaml b/target/executable/sortmerna/.config.vsh.yaml
index 127940b0..d9edaee9 100644
--- a/target/executable/sortmerna/.config.vsh.yaml
+++ b/target/executable/sortmerna/.config.vsh.yaml
@@ -597,9 +597,9 @@ build_info:
   output: "target/executable/sortmerna"
   executable: "target/executable/sortmerna/sortmerna"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/executable/sortmerna/sortmerna b/target/executable/sortmerna/sortmerna
index 06c75ff2..8db9a00c 100755
--- a/target/executable/sortmerna/sortmerna
+++ b/target/executable/sortmerna/sortmerna
@@ -448,9 +448,9 @@ ENTRYPOINT []
 RUN echo SortMeRNA: `sortmerna --version | sed -n 's/.*version \([0-9]\+\.[0-9]\+\.[0-9]\+\).*/\1/p'`
 
 LABEL org.opencontainers.image.description="Companion container for running component sortmerna"
-LABEL org.opencontainers.image.created="2025-06-23T06:29:25Z"
+LABEL org.opencontainers.image.created="2025-06-24T10:40:42Z"
 LABEL org.opencontainers.image.source="https://github.com/sortmerna/sortmerna"
-LABEL org.opencontainers.image.revision="219ba1d3d0d7fbc66393595534bb6c333b08b238"
+LABEL org.opencontainers.image.revision="f91567d467e6be79a5f71b24a54864ab13bdd278"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER
diff --git a/target/executable/star/star_align_reads/.config.vsh.yaml b/target/executable/star/star_align_reads/.config.vsh.yaml
index ae0f7cff..f8e84942 100644
--- a/target/executable/star/star_align_reads/.config.vsh.yaml
+++ b/target/executable/star/star_align_reads/.config.vsh.yaml
@@ -2666,9 +2666,9 @@ build_info:
   output: "target/executable/star/star_align_reads"
   executable: "target/executable/star/star_align_reads/star_align_reads"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/executable/star/star_align_reads/star_align_reads b/target/executable/star/star_align_reads/star_align_reads
index 3b746871..08c981f3 100755
--- a/target/executable/star/star_align_reads/star_align_reads
+++ b/target/executable/star/star_align_reads/star_align_reads
@@ -475,9 +475,9 @@ RUN STAR --version | sed 's#\(.*\)#star: "\1"#' > /var/software_versions.txt
 
 LABEL org.opencontainers.image.authors="Angela Oliveira Pisco, Robrecht Cannoodt"
 LABEL org.opencontainers.image.description="Companion container for running component star star_align_reads"
-LABEL org.opencontainers.image.created="2025-06-23T06:29:29Z"
+LABEL org.opencontainers.image.created="2025-06-24T10:40:47Z"
 LABEL org.opencontainers.image.source="https://github.com/alexdobin/STAR"
-LABEL org.opencontainers.image.revision="219ba1d3d0d7fbc66393595534bb6c333b08b238"
+LABEL org.opencontainers.image.revision="f91567d467e6be79a5f71b24a54864ab13bdd278"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER
diff --git a/target/executable/star/star_genome_generate/.config.vsh.yaml b/target/executable/star/star_genome_generate/.config.vsh.yaml
index d86b83c3..24daafda 100644
--- a/target/executable/star/star_genome_generate/.config.vsh.yaml
+++ b/target/executable/star/star_genome_generate/.config.vsh.yaml
@@ -331,9 +331,9 @@ build_info:
   output: "target/executable/star/star_genome_generate"
   executable: "target/executable/star/star_genome_generate/star_genome_generate"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/executable/star/star_genome_generate/star_genome_generate b/target/executable/star/star_genome_generate/star_genome_generate
index 8c5a1841..bf184790 100755
--- a/target/executable/star/star_genome_generate/star_genome_generate
+++ b/target/executable/star/star_genome_generate/star_genome_generate
@@ -467,9 +467,9 @@ RUN STAR --version | sed 's#\(.*\)#star: "\1"#' > /var/software_versions.txt
 
 LABEL org.opencontainers.image.authors="Sai Nirmayi Yasa"
 LABEL org.opencontainers.image.description="Companion container for running component star star_genome_generate"
-LABEL org.opencontainers.image.created="2025-06-23T06:29:29Z"
+LABEL org.opencontainers.image.created="2025-06-24T10:40:46Z"
 LABEL org.opencontainers.image.source="https://github.com/alexdobin/STAR"
-LABEL org.opencontainers.image.revision="219ba1d3d0d7fbc66393595534bb6c333b08b238"
+LABEL org.opencontainers.image.revision="f91567d467e6be79a5f71b24a54864ab13bdd278"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER
diff --git a/target/executable/trimgalore/.config.vsh.yaml b/target/executable/trimgalore/.config.vsh.yaml
index 4614b114..07f34a95 100644
--- a/target/executable/trimgalore/.config.vsh.yaml
+++ b/target/executable/trimgalore/.config.vsh.yaml
@@ -768,9 +768,9 @@ build_info:
   output: "target/executable/trimgalore"
   executable: "target/executable/trimgalore/trimgalore"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/executable/trimgalore/trimgalore b/target/executable/trimgalore/trimgalore
index c6bcc7b8..1f33032d 100755
--- a/target/executable/trimgalore/trimgalore
+++ b/target/executable/trimgalore/trimgalore
@@ -452,9 +452,9 @@ RUN echo "TrimGalore: `trim_galore --version | sed -n 's/.*version\s\+\([0-9]\+\
 
 LABEL org.opencontainers.image.authors="Sai Nirmayi Yasa"
 LABEL org.opencontainers.image.description="Companion container for running component trimgalore"
-LABEL org.opencontainers.image.created="2025-06-23T06:29:31Z"
+LABEL org.opencontainers.image.created="2025-06-24T10:40:48Z"
 LABEL org.opencontainers.image.source="https://github.com/FelixKrueger/TrimGalore"
-LABEL org.opencontainers.image.revision="219ba1d3d0d7fbc66393595534bb6c333b08b238"
+LABEL org.opencontainers.image.revision="f91567d467e6be79a5f71b24a54864ab13bdd278"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER
diff --git a/target/executable/umi_tools/umi_tools_dedup/.config.vsh.yaml b/target/executable/umi_tools/umi_tools_dedup/.config.vsh.yaml
index 17a1ef6f..78eb0407 100644
--- a/target/executable/umi_tools/umi_tools_dedup/.config.vsh.yaml
+++ b/target/executable/umi_tools/umi_tools_dedup/.config.vsh.yaml
@@ -609,9 +609,9 @@ build_info:
   output: "target/executable/umi_tools/umi_tools_dedup"
   executable: "target/executable/umi_tools/umi_tools_dedup/umi_tools_dedup"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/executable/umi_tools/umi_tools_dedup/umi_tools_dedup b/target/executable/umi_tools/umi_tools_dedup/umi_tools_dedup
index 1d43c670..6e817714 100755
--- a/target/executable/umi_tools/umi_tools_dedup/umi_tools_dedup
+++ b/target/executable/umi_tools/umi_tools_dedup/umi_tools_dedup
@@ -452,9 +452,9 @@ RUN umi_tools -v | sed 's/ version//g' > /var/software_versions.txt
 
 LABEL org.opencontainers.image.authors="Emma Rousseau"
 LABEL org.opencontainers.image.description="Companion container for running component umi_tools umi_tools_dedup"
-LABEL org.opencontainers.image.created="2025-06-23T06:29:30Z"
+LABEL org.opencontainers.image.created="2025-06-24T10:40:47Z"
 LABEL org.opencontainers.image.source="https://github.com/CGATOxford/UMI-tools"
-LABEL org.opencontainers.image.revision="219ba1d3d0d7fbc66393595534bb6c333b08b238"
+LABEL org.opencontainers.image.revision="f91567d467e6be79a5f71b24a54864ab13bdd278"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER
diff --git a/target/executable/umi_tools/umi_tools_extract/.config.vsh.yaml b/target/executable/umi_tools/umi_tools_extract/.config.vsh.yaml
index 963f9699..8f404482 100644
--- a/target/executable/umi_tools/umi_tools_extract/.config.vsh.yaml
+++ b/target/executable/umi_tools/umi_tools_extract/.config.vsh.yaml
@@ -437,9 +437,9 @@ build_info:
   output: "target/executable/umi_tools/umi_tools_extract"
   executable: "target/executable/umi_tools/umi_tools_extract/umi_tools_extract"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/executable/umi_tools/umi_tools_extract/umi_tools_extract b/target/executable/umi_tools/umi_tools_extract/umi_tools_extract
index 577caa91..96a5ab2a 100755
--- a/target/executable/umi_tools/umi_tools_extract/umi_tools_extract
+++ b/target/executable/umi_tools/umi_tools_extract/umi_tools_extract
@@ -448,9 +448,9 @@ ENTRYPOINT []
 RUN umi_tools -v | sed 's/ version//g' > /var/software_versions.txt
 
 LABEL org.opencontainers.image.description="Companion container for running component umi_tools umi_tools_extract"
-LABEL org.opencontainers.image.created="2025-06-23T06:29:31Z"
+LABEL org.opencontainers.image.created="2025-06-24T10:40:48Z"
 LABEL org.opencontainers.image.source="https://github.com/CGATOxford/UMI-tools"
-LABEL org.opencontainers.image.revision="219ba1d3d0d7fbc66393595534bb6c333b08b238"
+LABEL org.opencontainers.image.revision="f91567d467e6be79a5f71b24a54864ab13bdd278"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER
diff --git a/target/executable/umi_tools/umi_tools_prepareforrsem/.config.vsh.yaml b/target/executable/umi_tools/umi_tools_prepareforrsem/.config.vsh.yaml
index f493bdae..223e4214 100644
--- a/target/executable/umi_tools/umi_tools_prepareforrsem/.config.vsh.yaml
+++ b/target/executable/umi_tools/umi_tools_prepareforrsem/.config.vsh.yaml
@@ -259,9 +259,9 @@ build_info:
   output: "target/executable/umi_tools/umi_tools_prepareforrsem"
   executable: "target/executable/umi_tools/umi_tools_prepareforrsem/umi_tools_prepareforrsem"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/executable/umi_tools/umi_tools_prepareforrsem/umi_tools_prepareforrsem b/target/executable/umi_tools/umi_tools_prepareforrsem/umi_tools_prepareforrsem
index da5bc22d..9b0d6bd8 100755
--- a/target/executable/umi_tools/umi_tools_prepareforrsem/umi_tools_prepareforrsem
+++ b/target/executable/umi_tools/umi_tools_prepareforrsem/umi_tools_prepareforrsem
@@ -448,9 +448,9 @@ ENTRYPOINT []
 RUN umi_tools -v | sed 's/ version//g' > /var/software_versions.txt
 
 LABEL org.opencontainers.image.description="Companion container for running component umi_tools umi_tools_prepareforrsem"
-LABEL org.opencontainers.image.created="2025-06-23T06:29:30Z"
+LABEL org.opencontainers.image.created="2025-06-24T10:40:47Z"
 LABEL org.opencontainers.image.source="https://github.com/CGATOxford/UMI-tools"
-LABEL org.opencontainers.image.revision="219ba1d3d0d7fbc66393595534bb6c333b08b238"
+LABEL org.opencontainers.image.revision="f91567d467e6be79a5f71b24a54864ab13bdd278"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER
diff --git a/target/nextflow/agat/agat_convert_bed2gff/.config.vsh.yaml b/target/nextflow/agat/agat_convert_bed2gff/.config.vsh.yaml
index 8ac5a2ff..be6f243a 100644
--- a/target/nextflow/agat/agat_convert_bed2gff/.config.vsh.yaml
+++ b/target/nextflow/agat/agat_convert_bed2gff/.config.vsh.yaml
@@ -233,9 +233,9 @@ build_info:
   output: "target/nextflow/agat/agat_convert_bed2gff"
   executable: "target/nextflow/agat/agat_convert_bed2gff/main.nf"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/nextflow/agat/agat_convert_bed2gff/main.nf b/target/nextflow/agat/agat_convert_bed2gff/main.nf
index 7d499f51..482e8948 100644
--- a/target/nextflow/agat/agat_convert_bed2gff/main.nf
+++ b/target/nextflow/agat/agat_convert_bed2gff/main.nf
@@ -3314,9 +3314,9 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/agat/agat_convert_bed2gff",
     "viash_version" : "0.9.4",
-    "git_commit" : "219ba1d3d0d7fbc66393595534bb6c333b08b238",
+    "git_commit" : "f91567d467e6be79a5f71b24a54864ab13bdd278",
     "git_remote" : "https://github.com/viash-hub/biobox",
-    "git_tag" : "v0.2.0-37-g219ba1d"
+    "git_tag" : "v0.2.0-38-gf91567d"
   },
   "package_config" : {
     "name" : "biobox",
diff --git a/target/nextflow/agat/agat_convert_embl2gff/.config.vsh.yaml b/target/nextflow/agat/agat_convert_embl2gff/.config.vsh.yaml
index cf6a00ef..a8ef5181 100644
--- a/target/nextflow/agat/agat_convert_embl2gff/.config.vsh.yaml
+++ b/target/nextflow/agat/agat_convert_embl2gff/.config.vsh.yaml
@@ -223,9 +223,9 @@ build_info:
   output: "target/nextflow/agat/agat_convert_embl2gff"
   executable: "target/nextflow/agat/agat_convert_embl2gff/main.nf"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/nextflow/agat/agat_convert_embl2gff/main.nf b/target/nextflow/agat/agat_convert_embl2gff/main.nf
index b81c9784..12ee2808 100644
--- a/target/nextflow/agat/agat_convert_embl2gff/main.nf
+++ b/target/nextflow/agat/agat_convert_embl2gff/main.nf
@@ -3307,9 +3307,9 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/agat/agat_convert_embl2gff",
     "viash_version" : "0.9.4",
-    "git_commit" : "219ba1d3d0d7fbc66393595534bb6c333b08b238",
+    "git_commit" : "f91567d467e6be79a5f71b24a54864ab13bdd278",
     "git_remote" : "https://github.com/viash-hub/biobox",
-    "git_tag" : "v0.2.0-37-g219ba1d"
+    "git_tag" : "v0.2.0-38-gf91567d"
   },
   "package_config" : {
     "name" : "biobox",
diff --git a/target/nextflow/agat/agat_convert_genscan2gff/.config.vsh.yaml b/target/nextflow/agat/agat_convert_genscan2gff/.config.vsh.yaml
index 91fdec4f..b27449e5 100644
--- a/target/nextflow/agat/agat_convert_genscan2gff/.config.vsh.yaml
+++ b/target/nextflow/agat/agat_convert_genscan2gff/.config.vsh.yaml
@@ -228,9 +228,9 @@ build_info:
   output: "target/nextflow/agat/agat_convert_genscan2gff"
   executable: "target/nextflow/agat/agat_convert_genscan2gff/main.nf"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/nextflow/agat/agat_convert_genscan2gff/main.nf b/target/nextflow/agat/agat_convert_genscan2gff/main.nf
index b7888530..3451b261 100644
--- a/target/nextflow/agat/agat_convert_genscan2gff/main.nf
+++ b/target/nextflow/agat/agat_convert_genscan2gff/main.nf
@@ -3309,9 +3309,9 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/agat/agat_convert_genscan2gff",
     "viash_version" : "0.9.4",
-    "git_commit" : "219ba1d3d0d7fbc66393595534bb6c333b08b238",
+    "git_commit" : "f91567d467e6be79a5f71b24a54864ab13bdd278",
     "git_remote" : "https://github.com/viash-hub/biobox",
-    "git_tag" : "v0.2.0-37-g219ba1d"
+    "git_tag" : "v0.2.0-38-gf91567d"
   },
   "package_config" : {
     "name" : "biobox",
diff --git a/target/nextflow/agat/agat_convert_mfannot2gff/.config.vsh.yaml b/target/nextflow/agat/agat_convert_mfannot2gff/.config.vsh.yaml
index f45bc266..af894f3c 100644
--- a/target/nextflow/agat/agat_convert_mfannot2gff/.config.vsh.yaml
+++ b/target/nextflow/agat/agat_convert_mfannot2gff/.config.vsh.yaml
@@ -184,9 +184,9 @@ build_info:
   output: "target/nextflow/agat/agat_convert_mfannot2gff"
   executable: "target/nextflow/agat/agat_convert_mfannot2gff/main.nf"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/nextflow/agat/agat_convert_mfannot2gff/main.nf b/target/nextflow/agat/agat_convert_mfannot2gff/main.nf
index 5abea81d..d41814f1 100644
--- a/target/nextflow/agat/agat_convert_mfannot2gff/main.nf
+++ b/target/nextflow/agat/agat_convert_mfannot2gff/main.nf
@@ -3269,9 +3269,9 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/agat/agat_convert_mfannot2gff",
     "viash_version" : "0.9.4",
-    "git_commit" : "219ba1d3d0d7fbc66393595534bb6c333b08b238",
+    "git_commit" : "f91567d467e6be79a5f71b24a54864ab13bdd278",
     "git_remote" : "https://github.com/viash-hub/biobox",
-    "git_tag" : "v0.2.0-37-g219ba1d"
+    "git_tag" : "v0.2.0-38-gf91567d"
   },
   "package_config" : {
     "name" : "biobox",
diff --git a/target/nextflow/agat/agat_convert_sp_gff2gtf/.config.vsh.yaml b/target/nextflow/agat/agat_convert_sp_gff2gtf/.config.vsh.yaml
index 9fc5897b..3e0c0b09 100644
--- a/target/nextflow/agat/agat_convert_sp_gff2gtf/.config.vsh.yaml
+++ b/target/nextflow/agat/agat_convert_sp_gff2gtf/.config.vsh.yaml
@@ -226,9 +226,9 @@ build_info:
   output: "target/nextflow/agat/agat_convert_sp_gff2gtf"
   executable: "target/nextflow/agat/agat_convert_sp_gff2gtf/main.nf"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/nextflow/agat/agat_convert_sp_gff2gtf/main.nf b/target/nextflow/agat/agat_convert_sp_gff2gtf/main.nf
index c2b327a1..362a4e0d 100644
--- a/target/nextflow/agat/agat_convert_sp_gff2gtf/main.nf
+++ b/target/nextflow/agat/agat_convert_sp_gff2gtf/main.nf
@@ -3290,9 +3290,9 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/agat/agat_convert_sp_gff2gtf",
     "viash_version" : "0.9.4",
-    "git_commit" : "219ba1d3d0d7fbc66393595534bb6c333b08b238",
+    "git_commit" : "f91567d467e6be79a5f71b24a54864ab13bdd278",
     "git_remote" : "https://github.com/viash-hub/biobox",
-    "git_tag" : "v0.2.0-37-g219ba1d"
+    "git_tag" : "v0.2.0-38-gf91567d"
   },
   "package_config" : {
     "name" : "biobox",
diff --git a/target/nextflow/agat/agat_convert_sp_gff2tsv/.config.vsh.yaml b/target/nextflow/agat/agat_convert_sp_gff2tsv/.config.vsh.yaml
index d30448e1..ccac4cb9 100644
--- a/target/nextflow/agat/agat_convert_sp_gff2tsv/.config.vsh.yaml
+++ b/target/nextflow/agat/agat_convert_sp_gff2tsv/.config.vsh.yaml
@@ -186,9 +186,9 @@ build_info:
   output: "target/nextflow/agat/agat_convert_sp_gff2tsv"
   executable: "target/nextflow/agat/agat_convert_sp_gff2tsv/main.nf"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/nextflow/agat/agat_convert_sp_gff2tsv/main.nf b/target/nextflow/agat/agat_convert_sp_gff2tsv/main.nf
index 809520dc..16a847bc 100644
--- a/target/nextflow/agat/agat_convert_sp_gff2tsv/main.nf
+++ b/target/nextflow/agat/agat_convert_sp_gff2tsv/main.nf
@@ -3268,9 +3268,9 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/agat/agat_convert_sp_gff2tsv",
     "viash_version" : "0.9.4",
-    "git_commit" : "219ba1d3d0d7fbc66393595534bb6c333b08b238",
+    "git_commit" : "f91567d467e6be79a5f71b24a54864ab13bdd278",
     "git_remote" : "https://github.com/viash-hub/biobox",
-    "git_tag" : "v0.2.0-37-g219ba1d"
+    "git_tag" : "v0.2.0-38-gf91567d"
   },
   "package_config" : {
     "name" : "biobox",
diff --git a/target/nextflow/agat/agat_convert_sp_gxf2gxf/.config.vsh.yaml b/target/nextflow/agat/agat_convert_sp_gxf2gxf/.config.vsh.yaml
index 61ea1864..da95c816 100644
--- a/target/nextflow/agat/agat_convert_sp_gxf2gxf/.config.vsh.yaml
+++ b/target/nextflow/agat/agat_convert_sp_gxf2gxf/.config.vsh.yaml
@@ -193,9 +193,9 @@ build_info:
   output: "target/nextflow/agat/agat_convert_sp_gxf2gxf"
   executable: "target/nextflow/agat/agat_convert_sp_gxf2gxf/main.nf"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/nextflow/agat/agat_convert_sp_gxf2gxf/main.nf b/target/nextflow/agat/agat_convert_sp_gxf2gxf/main.nf
index 76b6eff3..8668619a 100644
--- a/target/nextflow/agat/agat_convert_sp_gxf2gxf/main.nf
+++ b/target/nextflow/agat/agat_convert_sp_gxf2gxf/main.nf
@@ -3268,9 +3268,9 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/agat/agat_convert_sp_gxf2gxf",
     "viash_version" : "0.9.4",
-    "git_commit" : "219ba1d3d0d7fbc66393595534bb6c333b08b238",
+    "git_commit" : "f91567d467e6be79a5f71b24a54864ab13bdd278",
     "git_remote" : "https://github.com/viash-hub/biobox",
-    "git_tag" : "v0.2.0-37-g219ba1d"
+    "git_tag" : "v0.2.0-38-gf91567d"
   },
   "package_config" : {
     "name" : "biobox",
diff --git a/target/nextflow/agat/agat_sp_add_introns/.config.vsh.yaml b/target/nextflow/agat/agat_sp_add_introns/.config.vsh.yaml
index ad8adff4..9ae33499 100644
--- a/target/nextflow/agat/agat_sp_add_introns/.config.vsh.yaml
+++ b/target/nextflow/agat/agat_sp_add_introns/.config.vsh.yaml
@@ -184,9 +184,9 @@ build_info:
   output: "target/nextflow/agat/agat_sp_add_introns"
   executable: "target/nextflow/agat/agat_sp_add_introns/main.nf"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/nextflow/agat/agat_sp_add_introns/main.nf b/target/nextflow/agat/agat_sp_add_introns/main.nf
index 70d01b00..0b67a4a2 100644
--- a/target/nextflow/agat/agat_sp_add_introns/main.nf
+++ b/target/nextflow/agat/agat_sp_add_introns/main.nf
@@ -3271,9 +3271,9 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/agat/agat_sp_add_introns",
     "viash_version" : "0.9.4",
-    "git_commit" : "219ba1d3d0d7fbc66393595534bb6c333b08b238",
+    "git_commit" : "f91567d467e6be79a5f71b24a54864ab13bdd278",
     "git_remote" : "https://github.com/viash-hub/biobox",
-    "git_tag" : "v0.2.0-37-g219ba1d"
+    "git_tag" : "v0.2.0-38-gf91567d"
   },
   "package_config" : {
     "name" : "biobox",
diff --git a/target/nextflow/agat/agat_sp_filter_feature_from_kill_list/.config.vsh.yaml b/target/nextflow/agat/agat_sp_filter_feature_from_kill_list/.config.vsh.yaml
index b6f8b4dd..fe91a155 100644
--- a/target/nextflow/agat/agat_sp_filter_feature_from_kill_list/.config.vsh.yaml
+++ b/target/nextflow/agat/agat_sp_filter_feature_from_kill_list/.config.vsh.yaml
@@ -234,9 +234,9 @@ build_info:
   output: "target/nextflow/agat/agat_sp_filter_feature_from_kill_list"
   executable: "target/nextflow/agat/agat_sp_filter_feature_from_kill_list/main.nf"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/nextflow/agat/agat_sp_filter_feature_from_kill_list/main.nf b/target/nextflow/agat/agat_sp_filter_feature_from_kill_list/main.nf
index edef85c2..58ca5a92 100644
--- a/target/nextflow/agat/agat_sp_filter_feature_from_kill_list/main.nf
+++ b/target/nextflow/agat/agat_sp_filter_feature_from_kill_list/main.nf
@@ -3318,9 +3318,9 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/agat/agat_sp_filter_feature_from_kill_list",
     "viash_version" : "0.9.4",
-    "git_commit" : "219ba1d3d0d7fbc66393595534bb6c333b08b238",
+    "git_commit" : "f91567d467e6be79a5f71b24a54864ab13bdd278",
     "git_remote" : "https://github.com/viash-hub/biobox",
-    "git_tag" : "v0.2.0-37-g219ba1d"
+    "git_tag" : "v0.2.0-38-gf91567d"
   },
   "package_config" : {
     "name" : "biobox",
diff --git a/target/nextflow/agat/agat_sp_merge_annotations/.config.vsh.yaml b/target/nextflow/agat/agat_sp_merge_annotations/.config.vsh.yaml
index 203e46d6..ab4c3264 100644
--- a/target/nextflow/agat/agat_sp_merge_annotations/.config.vsh.yaml
+++ b/target/nextflow/agat/agat_sp_merge_annotations/.config.vsh.yaml
@@ -182,9 +182,9 @@ build_info:
   output: "target/nextflow/agat/agat_sp_merge_annotations"
   executable: "target/nextflow/agat/agat_sp_merge_annotations/main.nf"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/nextflow/agat/agat_sp_merge_annotations/main.nf b/target/nextflow/agat/agat_sp_merge_annotations/main.nf
index f7e03ef5..87f764a8 100644
--- a/target/nextflow/agat/agat_sp_merge_annotations/main.nf
+++ b/target/nextflow/agat/agat_sp_merge_annotations/main.nf
@@ -3268,9 +3268,9 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/agat/agat_sp_merge_annotations",
     "viash_version" : "0.9.4",
-    "git_commit" : "219ba1d3d0d7fbc66393595534bb6c333b08b238",
+    "git_commit" : "f91567d467e6be79a5f71b24a54864ab13bdd278",
     "git_remote" : "https://github.com/viash-hub/biobox",
-    "git_tag" : "v0.2.0-37-g219ba1d"
+    "git_tag" : "v0.2.0-38-gf91567d"
   },
   "package_config" : {
     "name" : "biobox",
diff --git a/target/nextflow/agat/agat_sp_statistics/.config.vsh.yaml b/target/nextflow/agat/agat_sp_statistics/.config.vsh.yaml
index 2f6d33da..c34ec670 100644
--- a/target/nextflow/agat/agat_sp_statistics/.config.vsh.yaml
+++ b/target/nextflow/agat/agat_sp_statistics/.config.vsh.yaml
@@ -229,9 +229,9 @@ build_info:
   output: "target/nextflow/agat/agat_sp_statistics"
   executable: "target/nextflow/agat/agat_sp_statistics/main.nf"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/nextflow/agat/agat_sp_statistics/main.nf b/target/nextflow/agat/agat_sp_statistics/main.nf
index ca53e1e2..c25616ca 100644
--- a/target/nextflow/agat/agat_sp_statistics/main.nf
+++ b/target/nextflow/agat/agat_sp_statistics/main.nf
@@ -3318,9 +3318,9 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/agat/agat_sp_statistics",
     "viash_version" : "0.9.4",
-    "git_commit" : "219ba1d3d0d7fbc66393595534bb6c333b08b238",
+    "git_commit" : "f91567d467e6be79a5f71b24a54864ab13bdd278",
     "git_remote" : "https://github.com/viash-hub/biobox",
-    "git_tag" : "v0.2.0-37-g219ba1d"
+    "git_tag" : "v0.2.0-38-gf91567d"
   },
   "package_config" : {
     "name" : "biobox",
diff --git a/target/nextflow/agat/agat_sq_stat_basic/.config.vsh.yaml b/target/nextflow/agat/agat_sq_stat_basic/.config.vsh.yaml
index 2391bb7d..d2bd62fb 100644
--- a/target/nextflow/agat/agat_sq_stat_basic/.config.vsh.yaml
+++ b/target/nextflow/agat/agat_sq_stat_basic/.config.vsh.yaml
@@ -225,9 +225,9 @@ build_info:
   output: "target/nextflow/agat/agat_sq_stat_basic"
   executable: "target/nextflow/agat/agat_sq_stat_basic/main.nf"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/nextflow/agat/agat_sq_stat_basic/main.nf b/target/nextflow/agat/agat_sq_stat_basic/main.nf
index c008dea4..fedd78c1 100644
--- a/target/nextflow/agat/agat_sq_stat_basic/main.nf
+++ b/target/nextflow/agat/agat_sq_stat_basic/main.nf
@@ -3304,9 +3304,9 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/agat/agat_sq_stat_basic",
     "viash_version" : "0.9.4",
-    "git_commit" : "219ba1d3d0d7fbc66393595534bb6c333b08b238",
+    "git_commit" : "f91567d467e6be79a5f71b24a54864ab13bdd278",
     "git_remote" : "https://github.com/viash-hub/biobox",
-    "git_tag" : "v0.2.0-37-g219ba1d"
+    "git_tag" : "v0.2.0-38-gf91567d"
   },
   "package_config" : {
     "name" : "biobox",
diff --git a/target/nextflow/arriba/.config.vsh.yaml b/target/nextflow/arriba/.config.vsh.yaml
index 52046f7d..bf1630a3 100644
--- a/target/nextflow/arriba/.config.vsh.yaml
+++ b/target/nextflow/arriba/.config.vsh.yaml
@@ -709,9 +709,9 @@ build_info:
   output: "target/nextflow/arriba"
   executable: "target/nextflow/arriba/main.nf"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/nextflow/arriba/main.nf b/target/nextflow/arriba/main.nf
index 9bf0282e..90e230e7 100644
--- a/target/nextflow/arriba/main.nf
+++ b/target/nextflow/arriba/main.nf
@@ -3822,9 +3822,9 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/arriba",
     "viash_version" : "0.9.4",
-    "git_commit" : "219ba1d3d0d7fbc66393595534bb6c333b08b238",
+    "git_commit" : "f91567d467e6be79a5f71b24a54864ab13bdd278",
     "git_remote" : "https://github.com/viash-hub/biobox",
-    "git_tag" : "v0.2.0-37-g219ba1d"
+    "git_tag" : "v0.2.0-38-gf91567d"
   },
   "package_config" : {
     "name" : "biobox",
diff --git a/target/nextflow/bases2fastq/.config.vsh.yaml b/target/nextflow/bases2fastq/.config.vsh.yaml
index 22751704..b90aac5a 100644
--- a/target/nextflow/bases2fastq/.config.vsh.yaml
+++ b/target/nextflow/bases2fastq/.config.vsh.yaml
@@ -397,9 +397,9 @@ build_info:
   output: "target/nextflow/bases2fastq"
   executable: "target/nextflow/bases2fastq/main.nf"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/nextflow/bases2fastq/main.nf b/target/nextflow/bases2fastq/main.nf
index e86eb030..30976430 100644
--- a/target/nextflow/bases2fastq/main.nf
+++ b/target/nextflow/bases2fastq/main.nf
@@ -3514,9 +3514,9 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/bases2fastq",
     "viash_version" : "0.9.4",
-    "git_commit" : "219ba1d3d0d7fbc66393595534bb6c333b08b238",
+    "git_commit" : "f91567d467e6be79a5f71b24a54864ab13bdd278",
     "git_remote" : "https://github.com/viash-hub/biobox",
-    "git_tag" : "v0.2.0-37-g219ba1d"
+    "git_tag" : "v0.2.0-38-gf91567d"
   },
   "package_config" : {
     "name" : "biobox",
diff --git a/target/nextflow/bbmap/bbmap_bbsplit/.config.vsh.yaml b/target/nextflow/bbmap/bbmap_bbsplit/.config.vsh.yaml
index fa790566..085b8ec7 100644
--- a/target/nextflow/bbmap/bbmap_bbsplit/.config.vsh.yaml
+++ b/target/nextflow/bbmap/bbmap_bbsplit/.config.vsh.yaml
@@ -371,9 +371,9 @@ build_info:
   output: "target/nextflow/bbmap/bbmap_bbsplit"
   executable: "target/nextflow/bbmap/bbmap_bbsplit/main.nf"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/nextflow/bbmap/bbmap_bbsplit/main.nf b/target/nextflow/bbmap/bbmap_bbsplit/main.nf
index 257f3c4b..8ccbe529 100644
--- a/target/nextflow/bbmap/bbmap_bbsplit/main.nf
+++ b/target/nextflow/bbmap/bbmap_bbsplit/main.nf
@@ -3450,9 +3450,9 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/bbmap/bbmap_bbsplit",
     "viash_version" : "0.9.4",
-    "git_commit" : "219ba1d3d0d7fbc66393595534bb6c333b08b238",
+    "git_commit" : "f91567d467e6be79a5f71b24a54864ab13bdd278",
     "git_remote" : "https://github.com/viash-hub/biobox",
-    "git_tag" : "v0.2.0-37-g219ba1d"
+    "git_tag" : "v0.2.0-38-gf91567d"
   },
   "package_config" : {
     "name" : "biobox",
diff --git a/target/nextflow/bcftools/bcftools_annotate/.config.vsh.yaml b/target/nextflow/bcftools/bcftools_annotate/.config.vsh.yaml
index f066eb76..36d453ef 100644
--- a/target/nextflow/bcftools/bcftools_annotate/.config.vsh.yaml
+++ b/target/nextflow/bcftools/bcftools_annotate/.config.vsh.yaml
@@ -468,9 +468,9 @@ build_info:
   output: "target/nextflow/bcftools/bcftools_annotate"
   executable: "target/nextflow/bcftools/bcftools_annotate/main.nf"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/nextflow/bcftools/bcftools_annotate/main.nf b/target/nextflow/bcftools/bcftools_annotate/main.nf
index 51fc9c48..179a9d6b 100644
--- a/target/nextflow/bcftools/bcftools_annotate/main.nf
+++ b/target/nextflow/bcftools/bcftools_annotate/main.nf
@@ -3558,9 +3558,9 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/bcftools/bcftools_annotate",
     "viash_version" : "0.9.4",
-    "git_commit" : "219ba1d3d0d7fbc66393595534bb6c333b08b238",
+    "git_commit" : "f91567d467e6be79a5f71b24a54864ab13bdd278",
     "git_remote" : "https://github.com/viash-hub/biobox",
-    "git_tag" : "v0.2.0-37-g219ba1d"
+    "git_tag" : "v0.2.0-38-gf91567d"
   },
   "package_config" : {
     "name" : "biobox",
diff --git a/target/nextflow/bcftools/bcftools_concat/.config.vsh.yaml b/target/nextflow/bcftools/bcftools_concat/.config.vsh.yaml
index 6b157a2b..4877a0fd 100644
--- a/target/nextflow/bcftools/bcftools_concat/.config.vsh.yaml
+++ b/target/nextflow/bcftools/bcftools_concat/.config.vsh.yaml
@@ -334,9 +334,9 @@ build_info:
   output: "target/nextflow/bcftools/bcftools_concat"
   executable: "target/nextflow/bcftools/bcftools_concat/main.nf"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/nextflow/bcftools/bcftools_concat/main.nf b/target/nextflow/bcftools/bcftools_concat/main.nf
index e487c75b..9634ff29 100644
--- a/target/nextflow/bcftools/bcftools_concat/main.nf
+++ b/target/nextflow/bcftools/bcftools_concat/main.nf
@@ -3430,9 +3430,9 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/bcftools/bcftools_concat",
     "viash_version" : "0.9.4",
-    "git_commit" : "219ba1d3d0d7fbc66393595534bb6c333b08b238",
+    "git_commit" : "f91567d467e6be79a5f71b24a54864ab13bdd278",
     "git_remote" : "https://github.com/viash-hub/biobox",
-    "git_tag" : "v0.2.0-37-g219ba1d"
+    "git_tag" : "v0.2.0-38-gf91567d"
   },
   "package_config" : {
     "name" : "biobox",
diff --git a/target/nextflow/bcftools/bcftools_norm/.config.vsh.yaml b/target/nextflow/bcftools/bcftools_norm/.config.vsh.yaml
index c783fb09..2c86eef1 100644
--- a/target/nextflow/bcftools/bcftools_norm/.config.vsh.yaml
+++ b/target/nextflow/bcftools/bcftools_norm/.config.vsh.yaml
@@ -415,9 +415,9 @@ build_info:
   output: "target/nextflow/bcftools/bcftools_norm"
   executable: "target/nextflow/bcftools/bcftools_norm/main.nf"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/nextflow/bcftools/bcftools_norm/main.nf b/target/nextflow/bcftools/bcftools_norm/main.nf
index 00b2435f..1b16c1f6 100644
--- a/target/nextflow/bcftools/bcftools_norm/main.nf
+++ b/target/nextflow/bcftools/bcftools_norm/main.nf
@@ -3523,9 +3523,9 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/bcftools/bcftools_norm",
     "viash_version" : "0.9.4",
-    "git_commit" : "219ba1d3d0d7fbc66393595534bb6c333b08b238",
+    "git_commit" : "f91567d467e6be79a5f71b24a54864ab13bdd278",
     "git_remote" : "https://github.com/viash-hub/biobox",
-    "git_tag" : "v0.2.0-37-g219ba1d"
+    "git_tag" : "v0.2.0-38-gf91567d"
   },
   "package_config" : {
     "name" : "biobox",
diff --git a/target/nextflow/bcftools/bcftools_sort/.config.vsh.yaml b/target/nextflow/bcftools/bcftools_sort/.config.vsh.yaml
index 852fff50..8747fd6b 100644
--- a/target/nextflow/bcftools/bcftools_sort/.config.vsh.yaml
+++ b/target/nextflow/bcftools/bcftools_sort/.config.vsh.yaml
@@ -184,9 +184,9 @@ build_info:
   output: "target/nextflow/bcftools/bcftools_sort"
   executable: "target/nextflow/bcftools/bcftools_sort/main.nf"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/nextflow/bcftools/bcftools_sort/main.nf b/target/nextflow/bcftools/bcftools_sort/main.nf
index 81975da7..fdd97969 100644
--- a/target/nextflow/bcftools/bcftools_sort/main.nf
+++ b/target/nextflow/bcftools/bcftools_sort/main.nf
@@ -3271,9 +3271,9 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/bcftools/bcftools_sort",
     "viash_version" : "0.9.4",
-    "git_commit" : "219ba1d3d0d7fbc66393595534bb6c333b08b238",
+    "git_commit" : "f91567d467e6be79a5f71b24a54864ab13bdd278",
     "git_remote" : "https://github.com/viash-hub/biobox",
-    "git_tag" : "v0.2.0-37-g219ba1d"
+    "git_tag" : "v0.2.0-38-gf91567d"
   },
   "package_config" : {
     "name" : "biobox",
diff --git a/target/nextflow/bcftools/bcftools_stats/.config.vsh.yaml b/target/nextflow/bcftools/bcftools_stats/.config.vsh.yaml
index eea607c9..61c6ca8e 100644
--- a/target/nextflow/bcftools/bcftools_stats/.config.vsh.yaml
+++ b/target/nextflow/bcftools/bcftools_stats/.config.vsh.yaml
@@ -457,9 +457,9 @@ build_info:
   output: "target/nextflow/bcftools/bcftools_stats"
   executable: "target/nextflow/bcftools/bcftools_stats/main.nf"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/nextflow/bcftools/bcftools_stats/main.nf b/target/nextflow/bcftools/bcftools_stats/main.nf
index a3cabc61..c7ec47d6 100644
--- a/target/nextflow/bcftools/bcftools_stats/main.nf
+++ b/target/nextflow/bcftools/bcftools_stats/main.nf
@@ -3560,9 +3560,9 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/bcftools/bcftools_stats",
     "viash_version" : "0.9.4",
-    "git_commit" : "219ba1d3d0d7fbc66393595534bb6c333b08b238",
+    "git_commit" : "f91567d467e6be79a5f71b24a54864ab13bdd278",
     "git_remote" : "https://github.com/viash-hub/biobox",
-    "git_tag" : "v0.2.0-37-g219ba1d"
+    "git_tag" : "v0.2.0-38-gf91567d"
   },
   "package_config" : {
     "name" : "biobox",
diff --git a/target/nextflow/bcl_convert/.config.vsh.yaml b/target/nextflow/bcl_convert/.config.vsh.yaml
index d1fdb632..5d9abf61 100644
--- a/target/nextflow/bcl_convert/.config.vsh.yaml
+++ b/target/nextflow/bcl_convert/.config.vsh.yaml
@@ -431,9 +431,9 @@ build_info:
   output: "target/nextflow/bcl_convert"
   executable: "target/nextflow/bcl_convert/main.nf"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/nextflow/bcl_convert/main.nf b/target/nextflow/bcl_convert/main.nf
index 9872e082..abddfa22 100644
--- a/target/nextflow/bcl_convert/main.nf
+++ b/target/nextflow/bcl_convert/main.nf
@@ -3571,9 +3571,9 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/bcl_convert",
     "viash_version" : "0.9.4",
-    "git_commit" : "219ba1d3d0d7fbc66393595534bb6c333b08b238",
+    "git_commit" : "f91567d467e6be79a5f71b24a54864ab13bdd278",
     "git_remote" : "https://github.com/viash-hub/biobox",
-    "git_tag" : "v0.2.0-37-g219ba1d"
+    "git_tag" : "v0.2.0-38-gf91567d"
   },
   "package_config" : {
     "name" : "biobox",
diff --git a/target/nextflow/bd_rhapsody/bd_rhapsody_make_reference/.config.vsh.yaml b/target/nextflow/bd_rhapsody/bd_rhapsody_make_reference/.config.vsh.yaml
index 55d589dc..5726b6a3 100644
--- a/target/nextflow/bd_rhapsody/bd_rhapsody_make_reference/.config.vsh.yaml
+++ b/target/nextflow/bd_rhapsody/bd_rhapsody_make_reference/.config.vsh.yaml
@@ -279,9 +279,9 @@ build_info:
   output: "target/nextflow/bd_rhapsody/bd_rhapsody_make_reference"
   executable: "target/nextflow/bd_rhapsody/bd_rhapsody_make_reference/main.nf"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/nextflow/bd_rhapsody/bd_rhapsody_make_reference/main.nf b/target/nextflow/bd_rhapsody/bd_rhapsody_make_reference/main.nf
index f8b03086..6dd09d5f 100644
--- a/target/nextflow/bd_rhapsody/bd_rhapsody_make_reference/main.nf
+++ b/target/nextflow/bd_rhapsody/bd_rhapsody_make_reference/main.nf
@@ -3379,9 +3379,9 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/bd_rhapsody/bd_rhapsody_make_reference",
     "viash_version" : "0.9.4",
-    "git_commit" : "219ba1d3d0d7fbc66393595534bb6c333b08b238",
+    "git_commit" : "f91567d467e6be79a5f71b24a54864ab13bdd278",
     "git_remote" : "https://github.com/viash-hub/biobox",
-    "git_tag" : "v0.2.0-37-g219ba1d"
+    "git_tag" : "v0.2.0-38-gf91567d"
   },
   "package_config" : {
     "name" : "biobox",
diff --git a/target/nextflow/bd_rhapsody/bd_rhapsody_sequence_analysis/.config.vsh.yaml b/target/nextflow/bd_rhapsody/bd_rhapsody_sequence_analysis/.config.vsh.yaml
index 652a82a6..08eba017 100644
--- a/target/nextflow/bd_rhapsody/bd_rhapsody_sequence_analysis/.config.vsh.yaml
+++ b/target/nextflow/bd_rhapsody/bd_rhapsody_sequence_analysis/.config.vsh.yaml
@@ -1120,9 +1120,9 @@ build_info:
   output: "target/nextflow/bd_rhapsody/bd_rhapsody_sequence_analysis"
   executable: "target/nextflow/bd_rhapsody/bd_rhapsody_sequence_analysis/main.nf"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/nextflow/bd_rhapsody/bd_rhapsody_sequence_analysis/main.nf b/target/nextflow/bd_rhapsody/bd_rhapsody_sequence_analysis/main.nf
index a27ac9a3..cb8b75c3 100644
--- a/target/nextflow/bd_rhapsody/bd_rhapsody_sequence_analysis/main.nf
+++ b/target/nextflow/bd_rhapsody/bd_rhapsody_sequence_analysis/main.nf
@@ -4426,9 +4426,9 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/bd_rhapsody/bd_rhapsody_sequence_analysis",
     "viash_version" : "0.9.4",
-    "git_commit" : "219ba1d3d0d7fbc66393595534bb6c333b08b238",
+    "git_commit" : "f91567d467e6be79a5f71b24a54864ab13bdd278",
     "git_remote" : "https://github.com/viash-hub/biobox",
-    "git_tag" : "v0.2.0-37-g219ba1d"
+    "git_tag" : "v0.2.0-38-gf91567d"
   },
   "package_config" : {
     "name" : "biobox",
diff --git a/target/nextflow/bedtools/bedtools_bamtobed/.config.vsh.yaml b/target/nextflow/bedtools/bedtools_bamtobed/.config.vsh.yaml
index 16f7b3df..21f34471 100644
--- a/target/nextflow/bedtools/bedtools_bamtobed/.config.vsh.yaml
+++ b/target/nextflow/bedtools/bedtools_bamtobed/.config.vsh.yaml
@@ -234,9 +234,9 @@ build_info:
   output: "target/nextflow/bedtools/bedtools_bamtobed"
   executable: "target/nextflow/bedtools/bedtools_bamtobed/main.nf"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/nextflow/bedtools/bedtools_bamtobed/main.nf b/target/nextflow/bedtools/bedtools_bamtobed/main.nf
index 42c8d8fe..f22d51b1 100644
--- a/target/nextflow/bedtools/bedtools_bamtobed/main.nf
+++ b/target/nextflow/bedtools/bedtools_bamtobed/main.nf
@@ -3324,9 +3324,9 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/bedtools/bedtools_bamtobed",
     "viash_version" : "0.9.4",
-    "git_commit" : "219ba1d3d0d7fbc66393595534bb6c333b08b238",
+    "git_commit" : "f91567d467e6be79a5f71b24a54864ab13bdd278",
     "git_remote" : "https://github.com/viash-hub/biobox",
-    "git_tag" : "v0.2.0-37-g219ba1d"
+    "git_tag" : "v0.2.0-38-gf91567d"
   },
   "package_config" : {
     "name" : "biobox",
diff --git a/target/nextflow/bedtools/bedtools_bamtofastq/.config.vsh.yaml b/target/nextflow/bedtools/bedtools_bamtofastq/.config.vsh.yaml
index 0334c729..9b531791 100644
--- a/target/nextflow/bedtools/bedtools_bamtofastq/.config.vsh.yaml
+++ b/target/nextflow/bedtools/bedtools_bamtofastq/.config.vsh.yaml
@@ -186,9 +186,9 @@ build_info:
   output: "target/nextflow/bedtools/bedtools_bamtofastq"
   executable: "target/nextflow/bedtools/bedtools_bamtofastq/main.nf"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/nextflow/bedtools/bedtools_bamtofastq/main.nf b/target/nextflow/bedtools/bedtools_bamtofastq/main.nf
index 6c3bc468..17373ad6 100644
--- a/target/nextflow/bedtools/bedtools_bamtofastq/main.nf
+++ b/target/nextflow/bedtools/bedtools_bamtofastq/main.nf
@@ -3273,9 +3273,9 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/bedtools/bedtools_bamtofastq",
     "viash_version" : "0.9.4",
-    "git_commit" : "219ba1d3d0d7fbc66393595534bb6c333b08b238",
+    "git_commit" : "f91567d467e6be79a5f71b24a54864ab13bdd278",
     "git_remote" : "https://github.com/viash-hub/biobox",
-    "git_tag" : "v0.2.0-37-g219ba1d"
+    "git_tag" : "v0.2.0-38-gf91567d"
   },
   "package_config" : {
     "name" : "biobox",
diff --git a/target/nextflow/bedtools/bedtools_bed12tobed6/.config.vsh.yaml b/target/nextflow/bedtools/bedtools_bed12tobed6/.config.vsh.yaml
index 39a232a6..a33f868f 100644
--- a/target/nextflow/bedtools/bedtools_bed12tobed6/.config.vsh.yaml
+++ b/target/nextflow/bedtools/bedtools_bed12tobed6/.config.vsh.yaml
@@ -175,9 +175,9 @@ build_info:
   output: "target/nextflow/bedtools/bedtools_bed12tobed6"
   executable: "target/nextflow/bedtools/bedtools_bed12tobed6/main.nf"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/nextflow/bedtools/bedtools_bed12tobed6/main.nf b/target/nextflow/bedtools/bedtools_bed12tobed6/main.nf
index 3d752d05..fdb92f12 100644
--- a/target/nextflow/bedtools/bedtools_bed12tobed6/main.nf
+++ b/target/nextflow/bedtools/bedtools_bed12tobed6/main.nf
@@ -3258,9 +3258,9 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/bedtools/bedtools_bed12tobed6",
     "viash_version" : "0.9.4",
-    "git_commit" : "219ba1d3d0d7fbc66393595534bb6c333b08b238",
+    "git_commit" : "f91567d467e6be79a5f71b24a54864ab13bdd278",
     "git_remote" : "https://github.com/viash-hub/biobox",
-    "git_tag" : "v0.2.0-37-g219ba1d"
+    "git_tag" : "v0.2.0-38-gf91567d"
   },
   "package_config" : {
     "name" : "biobox",
diff --git a/target/nextflow/bedtools/bedtools_bedtobam/.config.vsh.yaml b/target/nextflow/bedtools/bedtools_bedtobam/.config.vsh.yaml
index dc5420fc..76ffa711 100644
--- a/target/nextflow/bedtools/bedtools_bedtobam/.config.vsh.yaml
+++ b/target/nextflow/bedtools/bedtools_bedtobam/.config.vsh.yaml
@@ -213,9 +213,9 @@ build_info:
   output: "target/nextflow/bedtools/bedtools_bedtobam"
   executable: "target/nextflow/bedtools/bedtools_bedtobam/main.nf"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/nextflow/bedtools/bedtools_bedtobam/main.nf b/target/nextflow/bedtools/bedtools_bedtobam/main.nf
index 33ba8310..04a2ec6e 100644
--- a/target/nextflow/bedtools/bedtools_bedtobam/main.nf
+++ b/target/nextflow/bedtools/bedtools_bedtobam/main.nf
@@ -3306,9 +3306,9 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/bedtools/bedtools_bedtobam",
     "viash_version" : "0.9.4",
-    "git_commit" : "219ba1d3d0d7fbc66393595534bb6c333b08b238",
+    "git_commit" : "f91567d467e6be79a5f71b24a54864ab13bdd278",
     "git_remote" : "https://github.com/viash-hub/biobox",
-    "git_tag" : "v0.2.0-37-g219ba1d"
+    "git_tag" : "v0.2.0-38-gf91567d"
   },
   "package_config" : {
     "name" : "biobox",
diff --git a/target/nextflow/bedtools/bedtools_genomecov/.config.vsh.yaml b/target/nextflow/bedtools/bedtools_genomecov/.config.vsh.yaml
index 56f1e937..d40f6787 100644
--- a/target/nextflow/bedtools/bedtools_genomecov/.config.vsh.yaml
+++ b/target/nextflow/bedtools/bedtools_genomecov/.config.vsh.yaml
@@ -336,9 +336,9 @@ build_info:
   output: "target/nextflow/bedtools/bedtools_genomecov"
   executable: "target/nextflow/bedtools/bedtools_genomecov/main.nf"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/nextflow/bedtools/bedtools_genomecov/main.nf b/target/nextflow/bedtools/bedtools_genomecov/main.nf
index 72ba893a..b44f0b91 100644
--- a/target/nextflow/bedtools/bedtools_genomecov/main.nf
+++ b/target/nextflow/bedtools/bedtools_genomecov/main.nf
@@ -3430,9 +3430,9 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/bedtools/bedtools_genomecov",
     "viash_version" : "0.9.4",
-    "git_commit" : "219ba1d3d0d7fbc66393595534bb6c333b08b238",
+    "git_commit" : "f91567d467e6be79a5f71b24a54864ab13bdd278",
     "git_remote" : "https://github.com/viash-hub/biobox",
-    "git_tag" : "v0.2.0-37-g219ba1d"
+    "git_tag" : "v0.2.0-38-gf91567d"
   },
   "package_config" : {
     "name" : "biobox",
diff --git a/target/nextflow/bedtools/bedtools_getfasta/.config.vsh.yaml b/target/nextflow/bedtools/bedtools_getfasta/.config.vsh.yaml
index ddb6d89c..1f05d983 100644
--- a/target/nextflow/bedtools/bedtools_getfasta/.config.vsh.yaml
+++ b/target/nextflow/bedtools/bedtools_getfasta/.config.vsh.yaml
@@ -235,9 +235,9 @@ build_info:
   output: "target/nextflow/bedtools/bedtools_getfasta"
   executable: "target/nextflow/bedtools/bedtools_getfasta/main.nf"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/nextflow/bedtools/bedtools_getfasta/main.nf b/target/nextflow/bedtools/bedtools_getfasta/main.nf
index 3412b4d8..e459b0b2 100644
--- a/target/nextflow/bedtools/bedtools_getfasta/main.nf
+++ b/target/nextflow/bedtools/bedtools_getfasta/main.nf
@@ -3316,9 +3316,9 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/bedtools/bedtools_getfasta",
     "viash_version" : "0.9.4",
-    "git_commit" : "219ba1d3d0d7fbc66393595534bb6c333b08b238",
+    "git_commit" : "f91567d467e6be79a5f71b24a54864ab13bdd278",
     "git_remote" : "https://github.com/viash-hub/biobox",
-    "git_tag" : "v0.2.0-37-g219ba1d"
+    "git_tag" : "v0.2.0-38-gf91567d"
   },
   "package_config" : {
     "name" : "biobox",
diff --git a/target/nextflow/bedtools/bedtools_groupby/.config.vsh.yaml b/target/nextflow/bedtools/bedtools_groupby/.config.vsh.yaml
index db407c96..9214d84c 100644
--- a/target/nextflow/bedtools/bedtools_groupby/.config.vsh.yaml
+++ b/target/nextflow/bedtools/bedtools_groupby/.config.vsh.yaml
@@ -272,9 +272,9 @@ build_info:
   output: "target/nextflow/bedtools/bedtools_groupby"
   executable: "target/nextflow/bedtools/bedtools_groupby/main.nf"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/nextflow/bedtools/bedtools_groupby/main.nf b/target/nextflow/bedtools/bedtools_groupby/main.nf
index e47c6d22..c5a23c8b 100644
--- a/target/nextflow/bedtools/bedtools_groupby/main.nf
+++ b/target/nextflow/bedtools/bedtools_groupby/main.nf
@@ -3353,9 +3353,9 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/bedtools/bedtools_groupby",
     "viash_version" : "0.9.4",
-    "git_commit" : "219ba1d3d0d7fbc66393595534bb6c333b08b238",
+    "git_commit" : "f91567d467e6be79a5f71b24a54864ab13bdd278",
     "git_remote" : "https://github.com/viash-hub/biobox",
-    "git_tag" : "v0.2.0-37-g219ba1d"
+    "git_tag" : "v0.2.0-38-gf91567d"
   },
   "package_config" : {
     "name" : "biobox",
diff --git a/target/nextflow/bedtools/bedtools_intersect/.config.vsh.yaml b/target/nextflow/bedtools/bedtools_intersect/.config.vsh.yaml
index 1fd5b77f..e00997aa 100644
--- a/target/nextflow/bedtools/bedtools_intersect/.config.vsh.yaml
+++ b/target/nextflow/bedtools/bedtools_intersect/.config.vsh.yaml
@@ -409,9 +409,9 @@ build_info:
   output: "target/nextflow/bedtools/bedtools_intersect"
   executable: "target/nextflow/bedtools/bedtools_intersect/main.nf"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/nextflow/bedtools/bedtools_intersect/main.nf b/target/nextflow/bedtools/bedtools_intersect/main.nf
index 83f69f09..a052a0ac 100644
--- a/target/nextflow/bedtools/bedtools_intersect/main.nf
+++ b/target/nextflow/bedtools/bedtools_intersect/main.nf
@@ -3505,9 +3505,9 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/bedtools/bedtools_intersect",
     "viash_version" : "0.9.4",
-    "git_commit" : "219ba1d3d0d7fbc66393595534bb6c333b08b238",
+    "git_commit" : "f91567d467e6be79a5f71b24a54864ab13bdd278",
     "git_remote" : "https://github.com/viash-hub/biobox",
-    "git_tag" : "v0.2.0-37-g219ba1d"
+    "git_tag" : "v0.2.0-38-gf91567d"
   },
   "package_config" : {
     "name" : "biobox",
diff --git a/target/nextflow/bedtools/bedtools_links/.config.vsh.yaml b/target/nextflow/bedtools/bedtools_links/.config.vsh.yaml
index 099b1c34..fc3a1080 100644
--- a/target/nextflow/bedtools/bedtools_links/.config.vsh.yaml
+++ b/target/nextflow/bedtools/bedtools_links/.config.vsh.yaml
@@ -209,9 +209,9 @@ build_info:
   output: "target/nextflow/bedtools/bedtools_links"
   executable: "target/nextflow/bedtools/bedtools_links/main.nf"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/nextflow/bedtools/bedtools_links/main.nf b/target/nextflow/bedtools/bedtools_links/main.nf
index c99cd14c..0fc1bc45 100644
--- a/target/nextflow/bedtools/bedtools_links/main.nf
+++ b/target/nextflow/bedtools/bedtools_links/main.nf
@@ -3296,9 +3296,9 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/bedtools/bedtools_links",
     "viash_version" : "0.9.4",
-    "git_commit" : "219ba1d3d0d7fbc66393595534bb6c333b08b238",
+    "git_commit" : "f91567d467e6be79a5f71b24a54864ab13bdd278",
     "git_remote" : "https://github.com/viash-hub/biobox",
-    "git_tag" : "v0.2.0-37-g219ba1d"
+    "git_tag" : "v0.2.0-38-gf91567d"
   },
   "package_config" : {
     "name" : "biobox",
diff --git a/target/nextflow/bedtools/bedtools_merge/.config.vsh.yaml b/target/nextflow/bedtools/bedtools_merge/.config.vsh.yaml
index 86b959f8..2ce99eba 100644
--- a/target/nextflow/bedtools/bedtools_merge/.config.vsh.yaml
+++ b/target/nextflow/bedtools/bedtools_merge/.config.vsh.yaml
@@ -278,9 +278,9 @@ build_info:
   output: "target/nextflow/bedtools/bedtools_merge"
   executable: "target/nextflow/bedtools/bedtools_merge/main.nf"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/nextflow/bedtools/bedtools_merge/main.nf b/target/nextflow/bedtools/bedtools_merge/main.nf
index 09a32bb2..e440e41e 100644
--- a/target/nextflow/bedtools/bedtools_merge/main.nf
+++ b/target/nextflow/bedtools/bedtools_merge/main.nf
@@ -3357,9 +3357,9 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/bedtools/bedtools_merge",
     "viash_version" : "0.9.4",
-    "git_commit" : "219ba1d3d0d7fbc66393595534bb6c333b08b238",
+    "git_commit" : "f91567d467e6be79a5f71b24a54864ab13bdd278",
     "git_remote" : "https://github.com/viash-hub/biobox",
-    "git_tag" : "v0.2.0-37-g219ba1d"
+    "git_tag" : "v0.2.0-38-gf91567d"
   },
   "package_config" : {
     "name" : "biobox",
diff --git a/target/nextflow/bedtools/bedtools_sort/.config.vsh.yaml b/target/nextflow/bedtools/bedtools_sort/.config.vsh.yaml
index 6203945a..7a3479a4 100644
--- a/target/nextflow/bedtools/bedtools_sort/.config.vsh.yaml
+++ b/target/nextflow/bedtools/bedtools_sort/.config.vsh.yaml
@@ -221,9 +221,9 @@ build_info:
   output: "target/nextflow/bedtools/bedtools_sort"
   executable: "target/nextflow/bedtools/bedtools_sort/main.nf"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/nextflow/bedtools/bedtools_sort/main.nf b/target/nextflow/bedtools/bedtools_sort/main.nf
index cc1db9ea..c1a57387 100644
--- a/target/nextflow/bedtools/bedtools_sort/main.nf
+++ b/target/nextflow/bedtools/bedtools_sort/main.nf
@@ -3315,9 +3315,9 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/bedtools/bedtools_sort",
     "viash_version" : "0.9.4",
-    "git_commit" : "219ba1d3d0d7fbc66393595534bb6c333b08b238",
+    "git_commit" : "f91567d467e6be79a5f71b24a54864ab13bdd278",
     "git_remote" : "https://github.com/viash-hub/biobox",
-    "git_tag" : "v0.2.0-37-g219ba1d"
+    "git_tag" : "v0.2.0-38-gf91567d"
   },
   "package_config" : {
     "name" : "biobox",
diff --git a/target/nextflow/busco/busco_download_datasets/.config.vsh.yaml b/target/nextflow/busco/busco_download_datasets/.config.vsh.yaml
index 76385a5b..21f6917b 100644
--- a/target/nextflow/busco/busco_download_datasets/.config.vsh.yaml
+++ b/target/nextflow/busco/busco_download_datasets/.config.vsh.yaml
@@ -161,9 +161,9 @@ build_info:
   output: "target/nextflow/busco/busco_download_datasets"
   executable: "target/nextflow/busco/busco_download_datasets/main.nf"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/nextflow/busco/busco_download_datasets/main.nf b/target/nextflow/busco/busco_download_datasets/main.nf
index 032ca828..09be131a 100644
--- a/target/nextflow/busco/busco_download_datasets/main.nf
+++ b/target/nextflow/busco/busco_download_datasets/main.nf
@@ -3241,9 +3241,9 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/busco/busco_download_datasets",
     "viash_version" : "0.9.4",
-    "git_commit" : "219ba1d3d0d7fbc66393595534bb6c333b08b238",
+    "git_commit" : "f91567d467e6be79a5f71b24a54864ab13bdd278",
     "git_remote" : "https://github.com/viash-hub/biobox",
-    "git_tag" : "v0.2.0-37-g219ba1d"
+    "git_tag" : "v0.2.0-38-gf91567d"
   },
   "package_config" : {
     "name" : "biobox",
diff --git a/target/nextflow/busco/busco_list_datasets/.config.vsh.yaml b/target/nextflow/busco/busco_list_datasets/.config.vsh.yaml
index 9d40a316..e5c1ffdf 100644
--- a/target/nextflow/busco/busco_list_datasets/.config.vsh.yaml
+++ b/target/nextflow/busco/busco_list_datasets/.config.vsh.yaml
@@ -148,9 +148,9 @@ build_info:
   output: "target/nextflow/busco/busco_list_datasets"
   executable: "target/nextflow/busco/busco_list_datasets/main.nf"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/nextflow/busco/busco_list_datasets/main.nf b/target/nextflow/busco/busco_list_datasets/main.nf
index a8d69df7..ff1f4888 100644
--- a/target/nextflow/busco/busco_list_datasets/main.nf
+++ b/target/nextflow/busco/busco_list_datasets/main.nf
@@ -3227,9 +3227,9 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/busco/busco_list_datasets",
     "viash_version" : "0.9.4",
-    "git_commit" : "219ba1d3d0d7fbc66393595534bb6c333b08b238",
+    "git_commit" : "f91567d467e6be79a5f71b24a54864ab13bdd278",
     "git_remote" : "https://github.com/viash-hub/biobox",
-    "git_tag" : "v0.2.0-37-g219ba1d"
+    "git_tag" : "v0.2.0-38-gf91567d"
   },
   "package_config" : {
     "name" : "biobox",
diff --git a/target/nextflow/busco/busco_run/.config.vsh.yaml b/target/nextflow/busco/busco_run/.config.vsh.yaml
index a94b3d9d..28b1171e 100644
--- a/target/nextflow/busco/busco_run/.config.vsh.yaml
+++ b/target/nextflow/busco/busco_run/.config.vsh.yaml
@@ -426,9 +426,9 @@ build_info:
   output: "target/nextflow/busco/busco_run"
   executable: "target/nextflow/busco/busco_run/main.nf"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/nextflow/busco/busco_run/main.nf b/target/nextflow/busco/busco_run/main.nf
index e174d2c1..7bb96fcb 100644
--- a/target/nextflow/busco/busco_run/main.nf
+++ b/target/nextflow/busco/busco_run/main.nf
@@ -3539,9 +3539,9 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/busco/busco_run",
     "viash_version" : "0.9.4",
-    "git_commit" : "219ba1d3d0d7fbc66393595534bb6c333b08b238",
+    "git_commit" : "f91567d467e6be79a5f71b24a54864ab13bdd278",
     "git_remote" : "https://github.com/viash-hub/biobox",
-    "git_tag" : "v0.2.0-37-g219ba1d"
+    "git_tag" : "v0.2.0-38-gf91567d"
   },
   "package_config" : {
     "name" : "biobox",
diff --git a/target/nextflow/cellranger/cellranger_count/.config.vsh.yaml b/target/nextflow/cellranger/cellranger_count/.config.vsh.yaml
index 6fa770e0..a8bcc9f7 100644
--- a/target/nextflow/cellranger/cellranger_count/.config.vsh.yaml
+++ b/target/nextflow/cellranger/cellranger_count/.config.vsh.yaml
@@ -373,9 +373,9 @@ build_info:
   output: "target/nextflow/cellranger/cellranger_count"
   executable: "target/nextflow/cellranger/cellranger_count/main.nf"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/nextflow/cellranger/cellranger_count/main.nf b/target/nextflow/cellranger/cellranger_count/main.nf
index 4e7b5bb6..5a336370 100644
--- a/target/nextflow/cellranger/cellranger_count/main.nf
+++ b/target/nextflow/cellranger/cellranger_count/main.nf
@@ -3473,9 +3473,9 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/cellranger/cellranger_count",
     "viash_version" : "0.9.4",
-    "git_commit" : "219ba1d3d0d7fbc66393595534bb6c333b08b238",
+    "git_commit" : "f91567d467e6be79a5f71b24a54864ab13bdd278",
     "git_remote" : "https://github.com/viash-hub/biobox",
-    "git_tag" : "v0.2.0-37-g219ba1d"
+    "git_tag" : "v0.2.0-38-gf91567d"
   },
   "package_config" : {
     "name" : "biobox",
diff --git a/target/nextflow/cellranger/cellranger_mkref/.config.vsh.yaml b/target/nextflow/cellranger/cellranger_mkref/.config.vsh.yaml
index 95076bda..178e1577 100644
--- a/target/nextflow/cellranger/cellranger_mkref/.config.vsh.yaml
+++ b/target/nextflow/cellranger/cellranger_mkref/.config.vsh.yaml
@@ -193,9 +193,9 @@ build_info:
   output: "target/nextflow/cellranger/cellranger_mkref"
   executable: "target/nextflow/cellranger/cellranger_mkref/main.nf"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/nextflow/cellranger/cellranger_mkref/main.nf b/target/nextflow/cellranger/cellranger_mkref/main.nf
index bb535e04..f29280c1 100644
--- a/target/nextflow/cellranger/cellranger_mkref/main.nf
+++ b/target/nextflow/cellranger/cellranger_mkref/main.nf
@@ -3281,9 +3281,9 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/cellranger/cellranger_mkref",
     "viash_version" : "0.9.4",
-    "git_commit" : "219ba1d3d0d7fbc66393595534bb6c333b08b238",
+    "git_commit" : "f91567d467e6be79a5f71b24a54864ab13bdd278",
     "git_remote" : "https://github.com/viash-hub/biobox",
-    "git_tag" : "v0.2.0-37-g219ba1d"
+    "git_tag" : "v0.2.0-38-gf91567d"
   },
   "package_config" : {
     "name" : "biobox",
diff --git a/target/nextflow/cutadapt/.config.vsh.yaml b/target/nextflow/cutadapt/.config.vsh.yaml
index 4ec2eb1a..a1edcdfa 100644
--- a/target/nextflow/cutadapt/.config.vsh.yaml
+++ b/target/nextflow/cutadapt/.config.vsh.yaml
@@ -743,9 +743,9 @@ build_info:
   output: "target/nextflow/cutadapt"
   executable: "target/nextflow/cutadapt/main.nf"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/nextflow/cutadapt/main.nf b/target/nextflow/cutadapt/main.nf
index c51daf80..ba034b4b 100644
--- a/target/nextflow/cutadapt/main.nf
+++ b/target/nextflow/cutadapt/main.nf
@@ -3849,9 +3849,9 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/cutadapt",
     "viash_version" : "0.9.4",
-    "git_commit" : "219ba1d3d0d7fbc66393595534bb6c333b08b238",
+    "git_commit" : "f91567d467e6be79a5f71b24a54864ab13bdd278",
     "git_remote" : "https://github.com/viash-hub/biobox",
-    "git_tag" : "v0.2.0-37-g219ba1d"
+    "git_tag" : "v0.2.0-38-gf91567d"
   },
   "package_config" : {
     "name" : "biobox",
diff --git a/target/nextflow/falco/.config.vsh.yaml b/target/nextflow/falco/.config.vsh.yaml
index f1f74f36..f5fd9ada 100644
--- a/target/nextflow/falco/.config.vsh.yaml
+++ b/target/nextflow/falco/.config.vsh.yaml
@@ -320,9 +320,9 @@ build_info:
   output: "target/nextflow/falco"
   executable: "target/nextflow/falco/main.nf"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/nextflow/falco/main.nf b/target/nextflow/falco/main.nf
index 8a4926a2..587df15f 100644
--- a/target/nextflow/falco/main.nf
+++ b/target/nextflow/falco/main.nf
@@ -3400,9 +3400,9 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/falco",
     "viash_version" : "0.9.4",
-    "git_commit" : "219ba1d3d0d7fbc66393595534bb6c333b08b238",
+    "git_commit" : "f91567d467e6be79a5f71b24a54864ab13bdd278",
     "git_remote" : "https://github.com/viash-hub/biobox",
-    "git_tag" : "v0.2.0-37-g219ba1d"
+    "git_tag" : "v0.2.0-38-gf91567d"
   },
   "package_config" : {
     "name" : "biobox",
diff --git a/target/nextflow/fastp/.config.vsh.yaml b/target/nextflow/fastp/.config.vsh.yaml
index df2d78ef..962827e7 100644
--- a/target/nextflow/fastp/.config.vsh.yaml
+++ b/target/nextflow/fastp/.config.vsh.yaml
@@ -1086,9 +1086,9 @@ build_info:
   output: "target/nextflow/fastp"
   executable: "target/nextflow/fastp/main.nf"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/nextflow/fastp/main.nf b/target/nextflow/fastp/main.nf
index b4115fbf..0458cfd7 100644
--- a/target/nextflow/fastp/main.nf
+++ b/target/nextflow/fastp/main.nf
@@ -4253,9 +4253,9 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/fastp",
     "viash_version" : "0.9.4",
-    "git_commit" : "219ba1d3d0d7fbc66393595534bb6c333b08b238",
+    "git_commit" : "f91567d467e6be79a5f71b24a54864ab13bdd278",
     "git_remote" : "https://github.com/viash-hub/biobox",
-    "git_tag" : "v0.2.0-37-g219ba1d"
+    "git_tag" : "v0.2.0-38-gf91567d"
   },
   "package_config" : {
     "name" : "biobox",
diff --git a/target/nextflow/fastqc/.config.vsh.yaml b/target/nextflow/fastqc/.config.vsh.yaml
index 77f760cd..6adf525a 100644
--- a/target/nextflow/fastqc/.config.vsh.yaml
+++ b/target/nextflow/fastqc/.config.vsh.yaml
@@ -29,6 +29,18 @@ argument_groups:
   description: "At least one of the output options (--html, --zip, --summary, --data)\
     \ must be used.\n"
   arguments:
+  - type: "file"
+    name: "--outdir"
+    description: "Output directory where the results will be saved.\n"
+    info: null
+    example:
+    - "results"
+    must_exist: true
+    create_parent: true
+    required: false
+    direction: "output"
+    multiple: false
+    multiple_sep: ";"
   - type: "file"
     name: "--html"
     description: "Create the HTML report of the results. \n'*' wild card must be provided\
@@ -339,9 +351,9 @@ build_info:
   output: "target/nextflow/fastqc"
   executable: "target/nextflow/fastqc/main.nf"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/nextflow/fastqc/main.nf b/target/nextflow/fastqc/main.nf
index 1d649d28..c3d0387c 100644
--- a/target/nextflow/fastqc/main.nf
+++ b/target/nextflow/fastqc/main.nf
@@ -3075,6 +3075,20 @@ meta = [
       "name" : "Outputs",
       "description" : "At least one of the output options (--html, --zip, --summary, --data) must be used.\n",
       "arguments" : [
+        {
+          "type" : "file",
+          "name" : "--outdir",
+          "description" : "Output directory where the results will be saved.\n",
+          "example" : [
+            "results"
+          ],
+          "must_exist" : true,
+          "create_parent" : true,
+          "required" : false,
+          "direction" : "output",
+          "multiple" : false,
+          "multiple_sep" : ";"
+        },
         {
           "type" : "file",
           "name" : "--html",
@@ -3405,9 +3419,9 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/fastqc",
     "viash_version" : "0.9.4",
-    "git_commit" : "219ba1d3d0d7fbc66393595534bb6c333b08b238",
+    "git_commit" : "f91567d467e6be79a5f71b24a54864ab13bdd278",
     "git_remote" : "https://github.com/viash-hub/biobox",
-    "git_tag" : "v0.2.0-37-g219ba1d"
+    "git_tag" : "v0.2.0-38-gf91567d"
   },
   "package_config" : {
     "name" : "biobox",
@@ -3666,6 +3680,7 @@ cat > "$tempscript" << VIASHMAIN
 ## VIASH START
 # The following code has been auto-generated by Viash.
 $( if [ ! -z ${VIASH_PAR_INPUT+x} ]; then echo "${VIASH_PAR_INPUT}" | sed "s#'#'\\"'\\"'#g;s#.*#par_input='&'#" ; else echo "# par_input="; fi )
+$( if [ ! -z ${VIASH_PAR_OUTDIR+x} ]; then echo "${VIASH_PAR_OUTDIR}" | sed "s#'#'\\"'\\"'#g;s#.*#par_outdir='&'#" ; else echo "# par_outdir="; fi )
 $( if [ ! -z ${VIASH_PAR_HTML+x} ]; then echo "${VIASH_PAR_HTML}" | sed "s#'#'\\"'\\"'#g;s#.*#par_html='&'#" ; else echo "# par_html="; fi )
 $( if [ ! -z ${VIASH_PAR_ZIP+x} ]; then echo "${VIASH_PAR_ZIP}" | sed "s#'#'\\"'\\"'#g;s#.*#par_zip='&'#" ; else echo "# par_zip="; fi )
 $( if [ ! -z ${VIASH_PAR_SUMMARY+x} ]; then echo "${VIASH_PAR_SUMMARY}" | sed "s#'#'\\"'\\"'#g;s#.*#par_summary='&'#" ; else echo "# par_summary="; fi )
@@ -3706,8 +3721,8 @@ $( if [ ! -z ${VIASH_META_MEMORY_PIB+x} ]; then echo "${VIASH_META_MEMORY_PIB}"
 set -eo pipefail
 
 # Check if both outputs are empty, at least one must be passed.
-if [[ -z "\\$par_html" ]] && [[ -z "\\$par_zip" ]] && [[ -z "\\$par_summary" ]] && [[ -z "\\$par_data" ]]; then
-  echo "Error: At least one of the output arguments (--html, --zip, --summary, and --data) must be passed."
+if [[ -z "\\$par_outdir" ]] && [[ -z "\\$par_html" ]] && [[ -z "\\$par_zip" ]] && [[ -z "\\$par_summary" ]] && [[ -z "\\$par_data" ]]; then
+  echo "Error: At least one of the output arguments (--outdir, --html, --zip, --summary, and --data) must be passed."
   exit 1
 fi
 
@@ -3733,6 +3748,16 @@ function clean_up {
 }
 trap clean_up EXIT
 
+# Set output directory
+if [[ -n "\\$par_outdir" ]]; then
+  if [[ ! -d "\\$par_outdir" ]]; then
+    mkdir -p "\\$par_outdir"
+  fi
+  output_dir="\\$par_outdir"
+else
+  output_dir="\\$tmpdir"
+fi
+
 # Create input array 
 IFS=";" read -ra input <<< \\$par_input
 
@@ -3752,35 +3777,50 @@ fastqc \\\\
   \\${par_quiet:+--quiet} \\\\
   \\${meta_cpus:+--threads "\\$meta_cpus"} \\\\
   \\${meta_temp_dir:+--dir "\\$meta_temp_dir"} \\\\
-  --outdir "\\${tmpdir}" \\\\
+  --outdir "\\${output_dir}" \\\\
   "\\${input[@]}"
  
+
 # Move output files
 for file in "\\${input[@]}"; do
-  # Removes everthing after the first dot of the basename
+  # Removes everything after the first dot of the basename
   sample_name=\\$(basename "\\${file}" | sed 's/\\\\..*\\$//')
   if [[ -n "\\$par_html" ]]; then
-    input_html="\\${tmpdir}/\\${sample_name}_fastqc.html"
-    html_file="\\${par_html//\\\\*/\\$sample_name}"
-    mv "\\$input_html" "\\$html_file"
+    input_html="\\${output_dir}/\\${sample_name}_fastqc.html"
+    if [[ ! -f "\\$input_html" ]]; then
+      echo "WARNING: HTML file '\\$input_html' does not exist"
+    else
+      html_file="\\${par_html//\\\\*/\\$sample_name}"
+      cp "\\$input_html" "\\$html_file"
+    fi
   fi
   if [[ -n "\\$par_zip" ]]; then
-    input_zip="\\${tmpdir}/\\${sample_name}_fastqc.zip"
-    zip_file="\\${par_zip//\\\\*/\\$sample_name}"
-    mv "\\$input_zip" "\\$zip_file"
+    input_zip="\\${output_dir}/\\${sample_name}_fastqc.zip"
+    if [[ ! -f "\\$input_zip" ]]; then
+      echo "WARNING: ZIP file '\\$input_zip' does not exist"
+    else
+      zip_file="\\${par_zip//\\\\*/\\$sample_name}"
+      cp "\\$input_zip" "\\$zip_file"
+    fi
   fi
   if [[ -n "\\$par_summary" ]]; then
-    summary_file="\\${tmpdir}/\\${sample_name}_fastqc/summary.txt"
-    new_summary="\\${par_summary//\\\\*/\\$sample_name}"
-    mv "\\$summary_file" "\\$new_summary"
+    summary_file="\\${output_dir}/\\${sample_name}_fastqc/summary.txt"
+    if [[ ! -f "\\$summary_file" ]]; then
+      echo "WARNING: Summary file '\\$summary_file' does not exist"
+    else
+      new_summary="\\${par_summary//\\\\*/\\$sample_name}"
+      cp "\\$summary_file" "\\$new_summary"
+    fi
   fi
   if [[ -n "\\$par_data" ]]; then
-    data_file="\\${tmpdir}/\\${sample_name}_fastqc/fastqc_data.txt"
-    new_data="\\${par_data//\\\\*/\\$sample_name}"
-    mv "\\$data_file" "\\$new_data"
+    data_file="\\${output_dir}/\\${sample_name}_fastqc/fastqc_data.txt"
+    if [[ ! -f "\\$data_file" ]]; then
+      echo "WARNING: Data file '\\$data_file' does not exist"
+    else
+      new_data="\\${par_data//\\\\*/\\$sample_name}"
+      cp "\\$data_file" "\\$new_data"
+    fi
   fi
-  # Remove the extracted directory
-  rm -r "\\${tmpdir}/\\${sample_name}_fastqc"
 done
 VIASHMAIN
 bash "$tempscript"
diff --git a/target/nextflow/fastqc/nextflow_schema.json b/target/nextflow/fastqc/nextflow_schema.json
index 4951705a..ca2d0ce1 100644
--- a/target/nextflow/fastqc/nextflow_schema.json
+++ b/target/nextflow/fastqc/nextflow_schema.json
@@ -26,6 +26,13 @@
       "type": "object",
       "description": "At least one of the output options (--html, --zip, --summary, --data) must be used.\n",
       "properties": {
+        "outdir": {
+          "type": "string",
+          "format": "path",
+          "description": "Output directory where the results will be saved.\n",
+          "help_text": "Type: `file`, multiple: `False`, default: `\"$id.$key.outdir\"`, direction: `output`, example: `\"results\"`. ",
+          "default": "$id.$key.outdir"
+        },
         "html": {
           "type": "array",
           "items": {
diff --git a/target/nextflow/featurecounts/.config.vsh.yaml b/target/nextflow/featurecounts/.config.vsh.yaml
index d19b618a..22197936 100644
--- a/target/nextflow/featurecounts/.config.vsh.yaml
+++ b/target/nextflow/featurecounts/.config.vsh.yaml
@@ -643,9 +643,9 @@ build_info:
   output: "target/nextflow/featurecounts"
   executable: "target/nextflow/featurecounts/main.nf"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/nextflow/featurecounts/main.nf b/target/nextflow/featurecounts/main.nf
index d9b711f0..bb6eace2 100644
--- a/target/nextflow/featurecounts/main.nf
+++ b/target/nextflow/featurecounts/main.nf
@@ -3771,9 +3771,9 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/featurecounts",
     "viash_version" : "0.9.4",
-    "git_commit" : "219ba1d3d0d7fbc66393595534bb6c333b08b238",
+    "git_commit" : "f91567d467e6be79a5f71b24a54864ab13bdd278",
     "git_remote" : "https://github.com/viash-hub/biobox",
-    "git_tag" : "v0.2.0-37-g219ba1d"
+    "git_tag" : "v0.2.0-38-gf91567d"
   },
   "package_config" : {
     "name" : "biobox",
diff --git a/target/nextflow/fq/fq_lint/.config.vsh.yaml b/target/nextflow/fq/fq_lint/.config.vsh.yaml
index 2e830536..9178a72f 100644
--- a/target/nextflow/fq/fq_lint/.config.vsh.yaml
+++ b/target/nextflow/fq/fq_lint/.config.vsh.yaml
@@ -225,9 +225,9 @@ build_info:
   output: "target/nextflow/fq/fq_lint"
   executable: "target/nextflow/fq/fq_lint/main.nf"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/nextflow/fq/fq_lint/main.nf b/target/nextflow/fq/fq_lint/main.nf
index f9f3c269..d0946ef8 100644
--- a/target/nextflow/fq/fq_lint/main.nf
+++ b/target/nextflow/fq/fq_lint/main.nf
@@ -3319,9 +3319,9 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/fq/fq_lint",
     "viash_version" : "0.9.4",
-    "git_commit" : "219ba1d3d0d7fbc66393595534bb6c333b08b238",
+    "git_commit" : "f91567d467e6be79a5f71b24a54864ab13bdd278",
     "git_remote" : "https://github.com/viash-hub/biobox",
-    "git_tag" : "v0.2.0-37-g219ba1d"
+    "git_tag" : "v0.2.0-38-gf91567d"
   },
   "package_config" : {
     "name" : "biobox",
diff --git a/target/nextflow/fq/fq_subsample/.config.vsh.yaml b/target/nextflow/fq/fq_subsample/.config.vsh.yaml
index 2347bd2b..93eabed3 100644
--- a/target/nextflow/fq/fq_subsample/.config.vsh.yaml
+++ b/target/nextflow/fq/fq_subsample/.config.vsh.yaml
@@ -210,9 +210,9 @@ build_info:
   output: "target/nextflow/fq/fq_subsample"
   executable: "target/nextflow/fq/fq_subsample/main.nf"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/nextflow/fq/fq_subsample/main.nf b/target/nextflow/fq/fq_subsample/main.nf
index 0cad71c0..2f4b66bd 100644
--- a/target/nextflow/fq/fq_subsample/main.nf
+++ b/target/nextflow/fq/fq_subsample/main.nf
@@ -3296,9 +3296,9 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/fq/fq_subsample",
     "viash_version" : "0.9.4",
-    "git_commit" : "219ba1d3d0d7fbc66393595534bb6c333b08b238",
+    "git_commit" : "f91567d467e6be79a5f71b24a54864ab13bdd278",
     "git_remote" : "https://github.com/viash-hub/biobox",
-    "git_tag" : "v0.2.0-37-g219ba1d"
+    "git_tag" : "v0.2.0-38-gf91567d"
   },
   "package_config" : {
     "name" : "biobox",
diff --git a/target/nextflow/fq_subsample/.config.vsh.yaml b/target/nextflow/fq_subsample/.config.vsh.yaml
index 7377b160..4d7a0571 100644
--- a/target/nextflow/fq_subsample/.config.vsh.yaml
+++ b/target/nextflow/fq_subsample/.config.vsh.yaml
@@ -194,9 +194,9 @@ build_info:
   output: "target/nextflow/fq_subsample"
   executable: "target/nextflow/fq_subsample/main.nf"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/nextflow/fq_subsample/main.nf b/target/nextflow/fq_subsample/main.nf
index f3b4c11e..f5feeddd 100644
--- a/target/nextflow/fq_subsample/main.nf
+++ b/target/nextflow/fq_subsample/main.nf
@@ -3262,9 +3262,9 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/fq_subsample",
     "viash_version" : "0.9.4",
-    "git_commit" : "219ba1d3d0d7fbc66393595534bb6c333b08b238",
+    "git_commit" : "f91567d467e6be79a5f71b24a54864ab13bdd278",
     "git_remote" : "https://github.com/viash-hub/biobox",
-    "git_tag" : "v0.2.0-37-g219ba1d"
+    "git_tag" : "v0.2.0-38-gf91567d"
   },
   "package_config" : {
     "name" : "biobox",
diff --git a/target/nextflow/gffread/.config.vsh.yaml b/target/nextflow/gffread/.config.vsh.yaml
index faa10b11..37e48578 100644
--- a/target/nextflow/gffread/.config.vsh.yaml
+++ b/target/nextflow/gffread/.config.vsh.yaml
@@ -683,9 +683,9 @@ build_info:
   output: "target/nextflow/gffread"
   executable: "target/nextflow/gffread/main.nf"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/nextflow/gffread/main.nf b/target/nextflow/gffread/main.nf
index 4d70f83a..25c1fa05 100644
--- a/target/nextflow/gffread/main.nf
+++ b/target/nextflow/gffread/main.nf
@@ -3828,9 +3828,9 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/gffread",
     "viash_version" : "0.9.4",
-    "git_commit" : "219ba1d3d0d7fbc66393595534bb6c333b08b238",
+    "git_commit" : "f91567d467e6be79a5f71b24a54864ab13bdd278",
     "git_remote" : "https://github.com/viash-hub/biobox",
-    "git_tag" : "v0.2.0-37-g219ba1d"
+    "git_tag" : "v0.2.0-38-gf91567d"
   },
   "package_config" : {
     "name" : "biobox",
diff --git a/target/nextflow/kallisto/kallisto_index/.config.vsh.yaml b/target/nextflow/kallisto/kallisto_index/.config.vsh.yaml
index b4175e54..c5c4903b 100644
--- a/target/nextflow/kallisto/kallisto_index/.config.vsh.yaml
+++ b/target/nextflow/kallisto/kallisto_index/.config.vsh.yaml
@@ -221,9 +221,9 @@ build_info:
   output: "target/nextflow/kallisto/kallisto_index"
   executable: "target/nextflow/kallisto/kallisto_index/main.nf"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/nextflow/kallisto/kallisto_index/main.nf b/target/nextflow/kallisto/kallisto_index/main.nf
index 0ea2f9e5..199a9641 100644
--- a/target/nextflow/kallisto/kallisto_index/main.nf
+++ b/target/nextflow/kallisto/kallisto_index/main.nf
@@ -3301,9 +3301,9 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/kallisto/kallisto_index",
     "viash_version" : "0.9.4",
-    "git_commit" : "219ba1d3d0d7fbc66393595534bb6c333b08b238",
+    "git_commit" : "f91567d467e6be79a5f71b24a54864ab13bdd278",
     "git_remote" : "https://github.com/viash-hub/biobox",
-    "git_tag" : "v0.2.0-37-g219ba1d"
+    "git_tag" : "v0.2.0-38-gf91567d"
   },
   "package_config" : {
     "name" : "biobox",
diff --git a/target/nextflow/kallisto/kallisto_quant/.config.vsh.yaml b/target/nextflow/kallisto/kallisto_quant/.config.vsh.yaml
index 9ddc4e15..177e70ca 100644
--- a/target/nextflow/kallisto/kallisto_quant/.config.vsh.yaml
+++ b/target/nextflow/kallisto/kallisto_quant/.config.vsh.yaml
@@ -249,9 +249,9 @@ build_info:
   output: "target/nextflow/kallisto/kallisto_quant"
   executable: "target/nextflow/kallisto/kallisto_quant/main.nf"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/nextflow/kallisto/kallisto_quant/main.nf b/target/nextflow/kallisto/kallisto_quant/main.nf
index e2266eb6..68de5e83 100644
--- a/target/nextflow/kallisto/kallisto_quant/main.nf
+++ b/target/nextflow/kallisto/kallisto_quant/main.nf
@@ -3335,9 +3335,9 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/kallisto/kallisto_quant",
     "viash_version" : "0.9.4",
-    "git_commit" : "219ba1d3d0d7fbc66393595534bb6c333b08b238",
+    "git_commit" : "f91567d467e6be79a5f71b24a54864ab13bdd278",
     "git_remote" : "https://github.com/viash-hub/biobox",
-    "git_tag" : "v0.2.0-37-g219ba1d"
+    "git_tag" : "v0.2.0-38-gf91567d"
   },
   "package_config" : {
     "name" : "biobox",
diff --git a/target/nextflow/lofreq/lofreq_call/.config.vsh.yaml b/target/nextflow/lofreq/lofreq_call/.config.vsh.yaml
index 88d3abe7..68cb5b19 100644
--- a/target/nextflow/lofreq/lofreq_call/.config.vsh.yaml
+++ b/target/nextflow/lofreq/lofreq_call/.config.vsh.yaml
@@ -502,9 +502,9 @@ build_info:
   output: "target/nextflow/lofreq/lofreq_call"
   executable: "target/nextflow/lofreq/lofreq_call/main.nf"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/nextflow/lofreq/lofreq_call/main.nf b/target/nextflow/lofreq/lofreq_call/main.nf
index e8ff56ee..66bad612 100644
--- a/target/nextflow/lofreq/lofreq_call/main.nf
+++ b/target/nextflow/lofreq/lofreq_call/main.nf
@@ -3631,9 +3631,9 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/lofreq/lofreq_call",
     "viash_version" : "0.9.4",
-    "git_commit" : "219ba1d3d0d7fbc66393595534bb6c333b08b238",
+    "git_commit" : "f91567d467e6be79a5f71b24a54864ab13bdd278",
     "git_remote" : "https://github.com/viash-hub/biobox",
-    "git_tag" : "v0.2.0-37-g219ba1d"
+    "git_tag" : "v0.2.0-38-gf91567d"
   },
   "package_config" : {
     "name" : "biobox",
diff --git a/target/nextflow/lofreq/lofreq_indelqual/.config.vsh.yaml b/target/nextflow/lofreq/lofreq_indelqual/.config.vsh.yaml
index 0a1ee99f..040ef1f3 100644
--- a/target/nextflow/lofreq/lofreq_indelqual/.config.vsh.yaml
+++ b/target/nextflow/lofreq/lofreq_indelqual/.config.vsh.yaml
@@ -210,9 +210,9 @@ build_info:
   output: "target/nextflow/lofreq/lofreq_indelqual"
   executable: "target/nextflow/lofreq/lofreq_indelqual/main.nf"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/nextflow/lofreq/lofreq_indelqual/main.nf b/target/nextflow/lofreq/lofreq_indelqual/main.nf
index 4a7faf41..dd738d1f 100644
--- a/target/nextflow/lofreq/lofreq_indelqual/main.nf
+++ b/target/nextflow/lofreq/lofreq_indelqual/main.nf
@@ -3294,9 +3294,9 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/lofreq/lofreq_indelqual",
     "viash_version" : "0.9.4",
-    "git_commit" : "219ba1d3d0d7fbc66393595534bb6c333b08b238",
+    "git_commit" : "f91567d467e6be79a5f71b24a54864ab13bdd278",
     "git_remote" : "https://github.com/viash-hub/biobox",
-    "git_tag" : "v0.2.0-37-g219ba1d"
+    "git_tag" : "v0.2.0-38-gf91567d"
   },
   "package_config" : {
     "name" : "biobox",
diff --git a/target/nextflow/multiqc/.config.vsh.yaml b/target/nextflow/multiqc/.config.vsh.yaml
index 3bbf45e7..9d917fda 100644
--- a/target/nextflow/multiqc/.config.vsh.yaml
+++ b/target/nextflow/multiqc/.config.vsh.yaml
@@ -459,9 +459,9 @@ build_info:
   output: "target/nextflow/multiqc"
   executable: "target/nextflow/multiqc/main.nf"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/nextflow/multiqc/main.nf b/target/nextflow/multiqc/main.nf
index d7815c48..b5f7df64 100644
--- a/target/nextflow/multiqc/main.nf
+++ b/target/nextflow/multiqc/main.nf
@@ -3596,9 +3596,9 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/multiqc",
     "viash_version" : "0.9.4",
-    "git_commit" : "219ba1d3d0d7fbc66393595534bb6c333b08b238",
+    "git_commit" : "f91567d467e6be79a5f71b24a54864ab13bdd278",
     "git_remote" : "https://github.com/viash-hub/biobox",
-    "git_tag" : "v0.2.0-37-g219ba1d"
+    "git_tag" : "v0.2.0-38-gf91567d"
   },
   "package_config" : {
     "name" : "biobox",
diff --git a/target/nextflow/nanoplot/.config.vsh.yaml b/target/nextflow/nanoplot/.config.vsh.yaml
index addb3d25..79b64385 100644
--- a/target/nextflow/nanoplot/.config.vsh.yaml
+++ b/target/nextflow/nanoplot/.config.vsh.yaml
@@ -495,9 +495,9 @@ build_info:
   output: "target/nextflow/nanoplot"
   executable: "target/nextflow/nanoplot/main.nf"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/nextflow/nanoplot/main.nf b/target/nextflow/nanoplot/main.nf
index 0b67760c..44aeae95 100644
--- a/target/nextflow/nanoplot/main.nf
+++ b/target/nextflow/nanoplot/main.nf
@@ -3627,9 +3627,9 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/nanoplot",
     "viash_version" : "0.9.4",
-    "git_commit" : "219ba1d3d0d7fbc66393595534bb6c333b08b238",
+    "git_commit" : "f91567d467e6be79a5f71b24a54864ab13bdd278",
     "git_remote" : "https://github.com/viash-hub/biobox",
-    "git_tag" : "v0.2.0-37-g219ba1d"
+    "git_tag" : "v0.2.0-38-gf91567d"
   },
   "package_config" : {
     "name" : "biobox",
diff --git a/target/nextflow/pear/.config.vsh.yaml b/target/nextflow/pear/.config.vsh.yaml
index 4cfac02c..ebccacca 100644
--- a/target/nextflow/pear/.config.vsh.yaml
+++ b/target/nextflow/pear/.config.vsh.yaml
@@ -393,9 +393,9 @@ build_info:
   output: "target/nextflow/pear"
   executable: "target/nextflow/pear/main.nf"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/nextflow/pear/main.nf b/target/nextflow/pear/main.nf
index e1f6db2c..ec757264 100644
--- a/target/nextflow/pear/main.nf
+++ b/target/nextflow/pear/main.nf
@@ -3476,9 +3476,9 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/pear",
     "viash_version" : "0.9.4",
-    "git_commit" : "219ba1d3d0d7fbc66393595534bb6c333b08b238",
+    "git_commit" : "f91567d467e6be79a5f71b24a54864ab13bdd278",
     "git_remote" : "https://github.com/viash-hub/biobox",
-    "git_tag" : "v0.2.0-37-g219ba1d"
+    "git_tag" : "v0.2.0-38-gf91567d"
   },
   "package_config" : {
     "name" : "biobox",
diff --git a/target/nextflow/qualimap/qualimap_rnaseq/.config.vsh.yaml b/target/nextflow/qualimap/qualimap_rnaseq/.config.vsh.yaml
index db697d4a..7b33de7a 100644
--- a/target/nextflow/qualimap/qualimap_rnaseq/.config.vsh.yaml
+++ b/target/nextflow/qualimap/qualimap_rnaseq/.config.vsh.yaml
@@ -267,9 +267,9 @@ build_info:
   output: "target/nextflow/qualimap/qualimap_rnaseq"
   executable: "target/nextflow/qualimap/qualimap_rnaseq/main.nf"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/nextflow/qualimap/qualimap_rnaseq/main.nf b/target/nextflow/qualimap/qualimap_rnaseq/main.nf
index be8dff02..b2bcd058 100644
--- a/target/nextflow/qualimap/qualimap_rnaseq/main.nf
+++ b/target/nextflow/qualimap/qualimap_rnaseq/main.nf
@@ -3359,9 +3359,9 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/qualimap/qualimap_rnaseq",
     "viash_version" : "0.9.4",
-    "git_commit" : "219ba1d3d0d7fbc66393595534bb6c333b08b238",
+    "git_commit" : "f91567d467e6be79a5f71b24a54864ab13bdd278",
     "git_remote" : "https://github.com/viash-hub/biobox",
-    "git_tag" : "v0.2.0-37-g219ba1d"
+    "git_tag" : "v0.2.0-38-gf91567d"
   },
   "package_config" : {
     "name" : "biobox",
diff --git a/target/nextflow/rsem/rsem_calculate_expression/.config.vsh.yaml b/target/nextflow/rsem/rsem_calculate_expression/.config.vsh.yaml
index 220e3e85..14179369 100644
--- a/target/nextflow/rsem/rsem_calculate_expression/.config.vsh.yaml
+++ b/target/nextflow/rsem/rsem_calculate_expression/.config.vsh.yaml
@@ -855,9 +855,9 @@ build_info:
   output: "target/nextflow/rsem/rsem_calculate_expression"
   executable: "target/nextflow/rsem/rsem_calculate_expression/main.nf"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/nextflow/rsem/rsem_calculate_expression/main.nf b/target/nextflow/rsem/rsem_calculate_expression/main.nf
index 8aee3ea9..3e878ac7 100644
--- a/target/nextflow/rsem/rsem_calculate_expression/main.nf
+++ b/target/nextflow/rsem/rsem_calculate_expression/main.nf
@@ -3891,9 +3891,9 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/rsem/rsem_calculate_expression",
     "viash_version" : "0.9.4",
-    "git_commit" : "219ba1d3d0d7fbc66393595534bb6c333b08b238",
+    "git_commit" : "f91567d467e6be79a5f71b24a54864ab13bdd278",
     "git_remote" : "https://github.com/viash-hub/biobox",
-    "git_tag" : "v0.2.0-37-g219ba1d"
+    "git_tag" : "v0.2.0-38-gf91567d"
   },
   "package_config" : {
     "name" : "biobox",
diff --git a/target/nextflow/rsem/rsem_prepare_reference/.config.vsh.yaml b/target/nextflow/rsem/rsem_prepare_reference/.config.vsh.yaml
index 4b467244..5bee13ca 100644
--- a/target/nextflow/rsem/rsem_prepare_reference/.config.vsh.yaml
+++ b/target/nextflow/rsem/rsem_prepare_reference/.config.vsh.yaml
@@ -414,9 +414,9 @@ build_info:
   output: "target/nextflow/rsem/rsem_prepare_reference"
   executable: "target/nextflow/rsem/rsem_prepare_reference/main.nf"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/nextflow/rsem/rsem_prepare_reference/main.nf b/target/nextflow/rsem/rsem_prepare_reference/main.nf
index 7bae4489..2d401f42 100644
--- a/target/nextflow/rsem/rsem_prepare_reference/main.nf
+++ b/target/nextflow/rsem/rsem_prepare_reference/main.nf
@@ -3467,9 +3467,9 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/rsem/rsem_prepare_reference",
     "viash_version" : "0.9.4",
-    "git_commit" : "219ba1d3d0d7fbc66393595534bb6c333b08b238",
+    "git_commit" : "f91567d467e6be79a5f71b24a54864ab13bdd278",
     "git_remote" : "https://github.com/viash-hub/biobox",
-    "git_tag" : "v0.2.0-37-g219ba1d"
+    "git_tag" : "v0.2.0-38-gf91567d"
   },
   "package_config" : {
     "name" : "biobox",
diff --git a/target/nextflow/rseqc/rseqc_bamstat/.config.vsh.yaml b/target/nextflow/rseqc/rseqc_bamstat/.config.vsh.yaml
index 5a1df929..f1e1dcc8 100644
--- a/target/nextflow/rseqc/rseqc_bamstat/.config.vsh.yaml
+++ b/target/nextflow/rseqc/rseqc_bamstat/.config.vsh.yaml
@@ -173,9 +173,9 @@ build_info:
   output: "target/nextflow/rseqc/rseqc_bamstat"
   executable: "target/nextflow/rseqc/rseqc_bamstat/main.nf"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/nextflow/rseqc/rseqc_bamstat/main.nf b/target/nextflow/rseqc/rseqc_bamstat/main.nf
index 8233c60c..9e595463 100644
--- a/target/nextflow/rseqc/rseqc_bamstat/main.nf
+++ b/target/nextflow/rseqc/rseqc_bamstat/main.nf
@@ -3258,9 +3258,9 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/rseqc/rseqc_bamstat",
     "viash_version" : "0.9.4",
-    "git_commit" : "219ba1d3d0d7fbc66393595534bb6c333b08b238",
+    "git_commit" : "f91567d467e6be79a5f71b24a54864ab13bdd278",
     "git_remote" : "https://github.com/viash-hub/biobox",
-    "git_tag" : "v0.2.0-37-g219ba1d"
+    "git_tag" : "v0.2.0-38-gf91567d"
   },
   "package_config" : {
     "name" : "biobox",
diff --git a/target/nextflow/rseqc/rseqc_inferexperiment/.config.vsh.yaml b/target/nextflow/rseqc/rseqc_inferexperiment/.config.vsh.yaml
index 34b3982e..de298307 100644
--- a/target/nextflow/rseqc/rseqc_inferexperiment/.config.vsh.yaml
+++ b/target/nextflow/rseqc/rseqc_inferexperiment/.config.vsh.yaml
@@ -199,9 +199,9 @@ build_info:
   output: "target/nextflow/rseqc/rseqc_inferexperiment"
   executable: "target/nextflow/rseqc/rseqc_inferexperiment/main.nf"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/nextflow/rseqc/rseqc_inferexperiment/main.nf b/target/nextflow/rseqc/rseqc_inferexperiment/main.nf
index 3f494dfb..087a993e 100644
--- a/target/nextflow/rseqc/rseqc_inferexperiment/main.nf
+++ b/target/nextflow/rseqc/rseqc_inferexperiment/main.nf
@@ -3291,9 +3291,9 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/rseqc/rseqc_inferexperiment",
     "viash_version" : "0.9.4",
-    "git_commit" : "219ba1d3d0d7fbc66393595534bb6c333b08b238",
+    "git_commit" : "f91567d467e6be79a5f71b24a54864ab13bdd278",
     "git_remote" : "https://github.com/viash-hub/biobox",
-    "git_tag" : "v0.2.0-37-g219ba1d"
+    "git_tag" : "v0.2.0-38-gf91567d"
   },
   "package_config" : {
     "name" : "biobox",
diff --git a/target/nextflow/rseqc/rseqc_inner_distance/.config.vsh.yaml b/target/nextflow/rseqc/rseqc_inner_distance/.config.vsh.yaml
index 99a04326..83784a6a 100644
--- a/target/nextflow/rseqc/rseqc_inner_distance/.config.vsh.yaml
+++ b/target/nextflow/rseqc/rseqc_inner_distance/.config.vsh.yaml
@@ -292,9 +292,9 @@ build_info:
   output: "target/nextflow/rseqc/rseqc_inner_distance"
   executable: "target/nextflow/rseqc/rseqc_inner_distance/main.nf"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/nextflow/rseqc/rseqc_inner_distance/main.nf b/target/nextflow/rseqc/rseqc_inner_distance/main.nf
index f50f098d..3c5ee45b 100644
--- a/target/nextflow/rseqc/rseqc_inner_distance/main.nf
+++ b/target/nextflow/rseqc/rseqc_inner_distance/main.nf
@@ -3391,9 +3391,9 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/rseqc/rseqc_inner_distance",
     "viash_version" : "0.9.4",
-    "git_commit" : "219ba1d3d0d7fbc66393595534bb6c333b08b238",
+    "git_commit" : "f91567d467e6be79a5f71b24a54864ab13bdd278",
     "git_remote" : "https://github.com/viash-hub/biobox",
-    "git_tag" : "v0.2.0-37-g219ba1d"
+    "git_tag" : "v0.2.0-38-gf91567d"
   },
   "package_config" : {
     "name" : "biobox",
diff --git a/target/nextflow/salmon/salmon_index/.config.vsh.yaml b/target/nextflow/salmon/salmon_index/.config.vsh.yaml
index c41f7bf3..ba38530b 100644
--- a/target/nextflow/salmon/salmon_index/.config.vsh.yaml
+++ b/target/nextflow/salmon/salmon_index/.config.vsh.yaml
@@ -275,9 +275,9 @@ build_info:
   output: "target/nextflow/salmon/salmon_index"
   executable: "target/nextflow/salmon/salmon_index/main.nf"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/nextflow/salmon/salmon_index/main.nf b/target/nextflow/salmon/salmon_index/main.nf
index d2949f24..4603fc3c 100644
--- a/target/nextflow/salmon/salmon_index/main.nf
+++ b/target/nextflow/salmon/salmon_index/main.nf
@@ -3351,9 +3351,9 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/salmon/salmon_index",
     "viash_version" : "0.9.4",
-    "git_commit" : "219ba1d3d0d7fbc66393595534bb6c333b08b238",
+    "git_commit" : "f91567d467e6be79a5f71b24a54864ab13bdd278",
     "git_remote" : "https://github.com/viash-hub/biobox",
-    "git_tag" : "v0.2.0-37-g219ba1d"
+    "git_tag" : "v0.2.0-38-gf91567d"
   },
   "package_config" : {
     "name" : "biobox",
diff --git a/target/nextflow/salmon/salmon_quant/.config.vsh.yaml b/target/nextflow/salmon/salmon_quant/.config.vsh.yaml
index 5d876bf2..13d77c60 100644
--- a/target/nextflow/salmon/salmon_quant/.config.vsh.yaml
+++ b/target/nextflow/salmon/salmon_quant/.config.vsh.yaml
@@ -1171,9 +1171,9 @@ build_info:
   output: "target/nextflow/salmon/salmon_quant"
   executable: "target/nextflow/salmon/salmon_quant/main.nf"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/nextflow/salmon/salmon_quant/main.nf b/target/nextflow/salmon/salmon_quant/main.nf
index c4d052b3..7465a3dd 100644
--- a/target/nextflow/salmon/salmon_quant/main.nf
+++ b/target/nextflow/salmon/salmon_quant/main.nf
@@ -4186,9 +4186,9 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/salmon/salmon_quant",
     "viash_version" : "0.9.4",
-    "git_commit" : "219ba1d3d0d7fbc66393595534bb6c333b08b238",
+    "git_commit" : "f91567d467e6be79a5f71b24a54864ab13bdd278",
     "git_remote" : "https://github.com/viash-hub/biobox",
-    "git_tag" : "v0.2.0-37-g219ba1d"
+    "git_tag" : "v0.2.0-38-gf91567d"
   },
   "package_config" : {
     "name" : "biobox",
diff --git a/target/nextflow/samtools/samtools_collate/.config.vsh.yaml b/target/nextflow/samtools/samtools_collate/.config.vsh.yaml
index 4259b2e1..8783f410 100644
--- a/target/nextflow/samtools/samtools_collate/.config.vsh.yaml
+++ b/target/nextflow/samtools/samtools_collate/.config.vsh.yaml
@@ -262,9 +262,9 @@ build_info:
   output: "target/nextflow/samtools/samtools_collate"
   executable: "target/nextflow/samtools/samtools_collate/main.nf"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/nextflow/samtools/samtools_collate/main.nf b/target/nextflow/samtools/samtools_collate/main.nf
index 66835c44..3a41c631 100644
--- a/target/nextflow/samtools/samtools_collate/main.nf
+++ b/target/nextflow/samtools/samtools_collate/main.nf
@@ -3362,9 +3362,9 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/samtools/samtools_collate",
     "viash_version" : "0.9.4",
-    "git_commit" : "219ba1d3d0d7fbc66393595534bb6c333b08b238",
+    "git_commit" : "f91567d467e6be79a5f71b24a54864ab13bdd278",
     "git_remote" : "https://github.com/viash-hub/biobox",
-    "git_tag" : "v0.2.0-37-g219ba1d"
+    "git_tag" : "v0.2.0-38-gf91567d"
   },
   "package_config" : {
     "name" : "biobox",
diff --git a/target/nextflow/samtools/samtools_faidx/.config.vsh.yaml b/target/nextflow/samtools/samtools_faidx/.config.vsh.yaml
index 01d348fc..49f3d2f5 100644
--- a/target/nextflow/samtools/samtools_faidx/.config.vsh.yaml
+++ b/target/nextflow/samtools/samtools_faidx/.config.vsh.yaml
@@ -241,9 +241,9 @@ build_info:
   output: "target/nextflow/samtools/samtools_faidx"
   executable: "target/nextflow/samtools/samtools_faidx/main.nf"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/nextflow/samtools/samtools_faidx/main.nf b/target/nextflow/samtools/samtools_faidx/main.nf
index 43c86720..4ef447dc 100644
--- a/target/nextflow/samtools/samtools_faidx/main.nf
+++ b/target/nextflow/samtools/samtools_faidx/main.nf
@@ -3334,9 +3334,9 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/samtools/samtools_faidx",
     "viash_version" : "0.9.4",
-    "git_commit" : "219ba1d3d0d7fbc66393595534bb6c333b08b238",
+    "git_commit" : "f91567d467e6be79a5f71b24a54864ab13bdd278",
     "git_remote" : "https://github.com/viash-hub/biobox",
-    "git_tag" : "v0.2.0-37-g219ba1d"
+    "git_tag" : "v0.2.0-38-gf91567d"
   },
   "package_config" : {
     "name" : "biobox",
diff --git a/target/nextflow/samtools/samtools_fasta/.config.vsh.yaml b/target/nextflow/samtools/samtools_fasta/.config.vsh.yaml
index 828a7493..548b3da8 100644
--- a/target/nextflow/samtools/samtools_fasta/.config.vsh.yaml
+++ b/target/nextflow/samtools/samtools_fasta/.config.vsh.yaml
@@ -431,9 +431,9 @@ build_info:
   output: "target/nextflow/samtools/samtools_fasta"
   executable: "target/nextflow/samtools/samtools_fasta/main.nf"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/nextflow/samtools/samtools_fasta/main.nf b/target/nextflow/samtools/samtools_fasta/main.nf
index 73ebdd9b..a5076ef9 100644
--- a/target/nextflow/samtools/samtools_fasta/main.nf
+++ b/target/nextflow/samtools/samtools_fasta/main.nf
@@ -3526,9 +3526,9 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/samtools/samtools_fasta",
     "viash_version" : "0.9.4",
-    "git_commit" : "219ba1d3d0d7fbc66393595534bb6c333b08b238",
+    "git_commit" : "f91567d467e6be79a5f71b24a54864ab13bdd278",
     "git_remote" : "https://github.com/viash-hub/biobox",
-    "git_tag" : "v0.2.0-37-g219ba1d"
+    "git_tag" : "v0.2.0-38-gf91567d"
   },
   "package_config" : {
     "name" : "biobox",
diff --git a/target/nextflow/samtools/samtools_fastq/.config.vsh.yaml b/target/nextflow/samtools/samtools_fastq/.config.vsh.yaml
index 1894036b..c9d300dd 100644
--- a/target/nextflow/samtools/samtools_fastq/.config.vsh.yaml
+++ b/target/nextflow/samtools/samtools_fastq/.config.vsh.yaml
@@ -431,9 +431,9 @@ build_info:
   output: "target/nextflow/samtools/samtools_fastq"
   executable: "target/nextflow/samtools/samtools_fastq/main.nf"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/nextflow/samtools/samtools_fastq/main.nf b/target/nextflow/samtools/samtools_fastq/main.nf
index 8fac759d..ae886206 100644
--- a/target/nextflow/samtools/samtools_fastq/main.nf
+++ b/target/nextflow/samtools/samtools_fastq/main.nf
@@ -3526,9 +3526,9 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/samtools/samtools_fastq",
     "viash_version" : "0.9.4",
-    "git_commit" : "219ba1d3d0d7fbc66393595534bb6c333b08b238",
+    "git_commit" : "f91567d467e6be79a5f71b24a54864ab13bdd278",
     "git_remote" : "https://github.com/viash-hub/biobox",
-    "git_tag" : "v0.2.0-37-g219ba1d"
+    "git_tag" : "v0.2.0-38-gf91567d"
   },
   "package_config" : {
     "name" : "biobox",
diff --git a/target/nextflow/samtools/samtools_flagstat/.config.vsh.yaml b/target/nextflow/samtools/samtools_flagstat/.config.vsh.yaml
index 73d7b4f4..1c53c407 100644
--- a/target/nextflow/samtools/samtools_flagstat/.config.vsh.yaml
+++ b/target/nextflow/samtools/samtools_flagstat/.config.vsh.yaml
@@ -171,9 +171,9 @@ build_info:
   output: "target/nextflow/samtools/samtools_flagstat"
   executable: "target/nextflow/samtools/samtools_flagstat/main.nf"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/nextflow/samtools/samtools_flagstat/main.nf b/target/nextflow/samtools/samtools_flagstat/main.nf
index cbe5bc90..fb448899 100644
--- a/target/nextflow/samtools/samtools_flagstat/main.nf
+++ b/target/nextflow/samtools/samtools_flagstat/main.nf
@@ -3250,9 +3250,9 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/samtools/samtools_flagstat",
     "viash_version" : "0.9.4",
-    "git_commit" : "219ba1d3d0d7fbc66393595534bb6c333b08b238",
+    "git_commit" : "f91567d467e6be79a5f71b24a54864ab13bdd278",
     "git_remote" : "https://github.com/viash-hub/biobox",
-    "git_tag" : "v0.2.0-37-g219ba1d"
+    "git_tag" : "v0.2.0-38-gf91567d"
   },
   "package_config" : {
     "name" : "biobox",
diff --git a/target/nextflow/samtools/samtools_idxstats/.config.vsh.yaml b/target/nextflow/samtools/samtools_idxstats/.config.vsh.yaml
index c31bb2bd..610f7bb1 100644
--- a/target/nextflow/samtools/samtools_idxstats/.config.vsh.yaml
+++ b/target/nextflow/samtools/samtools_idxstats/.config.vsh.yaml
@@ -181,9 +181,9 @@ build_info:
   output: "target/nextflow/samtools/samtools_idxstats"
   executable: "target/nextflow/samtools/samtools_idxstats/main.nf"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/nextflow/samtools/samtools_idxstats/main.nf b/target/nextflow/samtools/samtools_idxstats/main.nf
index f6ec5f10..f999be35 100644
--- a/target/nextflow/samtools/samtools_idxstats/main.nf
+++ b/target/nextflow/samtools/samtools_idxstats/main.nf
@@ -3262,9 +3262,9 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/samtools/samtools_idxstats",
     "viash_version" : "0.9.4",
-    "git_commit" : "219ba1d3d0d7fbc66393595534bb6c333b08b238",
+    "git_commit" : "f91567d467e6be79a5f71b24a54864ab13bdd278",
     "git_remote" : "https://github.com/viash-hub/biobox",
-    "git_tag" : "v0.2.0-37-g219ba1d"
+    "git_tag" : "v0.2.0-38-gf91567d"
   },
   "package_config" : {
     "name" : "biobox",
diff --git a/target/nextflow/samtools/samtools_index/.config.vsh.yaml b/target/nextflow/samtools/samtools_index/.config.vsh.yaml
index 52e1ab98..eb0e4eff 100644
--- a/target/nextflow/samtools/samtools_index/.config.vsh.yaml
+++ b/target/nextflow/samtools/samtools_index/.config.vsh.yaml
@@ -187,9 +187,9 @@ build_info:
   output: "target/nextflow/samtools/samtools_index"
   executable: "target/nextflow/samtools/samtools_index/main.nf"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/nextflow/samtools/samtools_index/main.nf b/target/nextflow/samtools/samtools_index/main.nf
index 099cc2f5..712db763 100644
--- a/target/nextflow/samtools/samtools_index/main.nf
+++ b/target/nextflow/samtools/samtools_index/main.nf
@@ -3275,9 +3275,9 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/samtools/samtools_index",
     "viash_version" : "0.9.4",
-    "git_commit" : "219ba1d3d0d7fbc66393595534bb6c333b08b238",
+    "git_commit" : "f91567d467e6be79a5f71b24a54864ab13bdd278",
     "git_remote" : "https://github.com/viash-hub/biobox",
-    "git_tag" : "v0.2.0-37-g219ba1d"
+    "git_tag" : "v0.2.0-38-gf91567d"
   },
   "package_config" : {
     "name" : "biobox",
diff --git a/target/nextflow/samtools/samtools_sort/.config.vsh.yaml b/target/nextflow/samtools/samtools_sort/.config.vsh.yaml
index 04de62ee..72517af0 100644
--- a/target/nextflow/samtools/samtools_sort/.config.vsh.yaml
+++ b/target/nextflow/samtools/samtools_sort/.config.vsh.yaml
@@ -330,9 +330,9 @@ build_info:
   output: "target/nextflow/samtools/samtools_sort"
   executable: "target/nextflow/samtools/samtools_sort/main.nf"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/nextflow/samtools/samtools_sort/main.nf b/target/nextflow/samtools/samtools_sort/main.nf
index 49a31247..ae4debe2 100644
--- a/target/nextflow/samtools/samtools_sort/main.nf
+++ b/target/nextflow/samtools/samtools_sort/main.nf
@@ -3447,9 +3447,9 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/samtools/samtools_sort",
     "viash_version" : "0.9.4",
-    "git_commit" : "219ba1d3d0d7fbc66393595534bb6c333b08b238",
+    "git_commit" : "f91567d467e6be79a5f71b24a54864ab13bdd278",
     "git_remote" : "https://github.com/viash-hub/biobox",
-    "git_tag" : "v0.2.0-37-g219ba1d"
+    "git_tag" : "v0.2.0-38-gf91567d"
   },
   "package_config" : {
     "name" : "biobox",
diff --git a/target/nextflow/samtools/samtools_stats/.config.vsh.yaml b/target/nextflow/samtools/samtools_stats/.config.vsh.yaml
index c38712bf..a4060492 100644
--- a/target/nextflow/samtools/samtools_stats/.config.vsh.yaml
+++ b/target/nextflow/samtools/samtools_stats/.config.vsh.yaml
@@ -399,9 +399,9 @@ build_info:
   output: "target/nextflow/samtools/samtools_stats"
   executable: "target/nextflow/samtools/samtools_stats/main.nf"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/nextflow/samtools/samtools_stats/main.nf b/target/nextflow/samtools/samtools_stats/main.nf
index f9a624c9..25f20a72 100644
--- a/target/nextflow/samtools/samtools_stats/main.nf
+++ b/target/nextflow/samtools/samtools_stats/main.nf
@@ -3517,9 +3517,9 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/samtools/samtools_stats",
     "viash_version" : "0.9.4",
-    "git_commit" : "219ba1d3d0d7fbc66393595534bb6c333b08b238",
+    "git_commit" : "f91567d467e6be79a5f71b24a54864ab13bdd278",
     "git_remote" : "https://github.com/viash-hub/biobox",
-    "git_tag" : "v0.2.0-37-g219ba1d"
+    "git_tag" : "v0.2.0-38-gf91567d"
   },
   "package_config" : {
     "name" : "biobox",
diff --git a/target/nextflow/samtools/samtools_view/.config.vsh.yaml b/target/nextflow/samtools/samtools_view/.config.vsh.yaml
index fc2b1fb0..1bf793f9 100644
--- a/target/nextflow/samtools/samtools_view/.config.vsh.yaml
+++ b/target/nextflow/samtools/samtools_view/.config.vsh.yaml
@@ -663,9 +663,9 @@ build_info:
   output: "target/nextflow/samtools/samtools_view"
   executable: "target/nextflow/samtools/samtools_view/main.nf"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/nextflow/samtools/samtools_view/main.nf b/target/nextflow/samtools/samtools_view/main.nf
index 99764ba4..12d3f01c 100644
--- a/target/nextflow/samtools/samtools_view/main.nf
+++ b/target/nextflow/samtools/samtools_view/main.nf
@@ -3698,9 +3698,9 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/samtools/samtools_view",
     "viash_version" : "0.9.4",
-    "git_commit" : "219ba1d3d0d7fbc66393595534bb6c333b08b238",
+    "git_commit" : "f91567d467e6be79a5f71b24a54864ab13bdd278",
     "git_remote" : "https://github.com/viash-hub/biobox",
-    "git_tag" : "v0.2.0-37-g219ba1d"
+    "git_tag" : "v0.2.0-38-gf91567d"
   },
   "package_config" : {
     "name" : "biobox",
diff --git a/target/nextflow/seqtk/seqtk_sample/.config.vsh.yaml b/target/nextflow/seqtk/seqtk_sample/.config.vsh.yaml
index cd20a14a..9c33e9c7 100644
--- a/target/nextflow/seqtk/seqtk_sample/.config.vsh.yaml
+++ b/target/nextflow/seqtk/seqtk_sample/.config.vsh.yaml
@@ -176,9 +176,9 @@ build_info:
   output: "target/nextflow/seqtk/seqtk_sample"
   executable: "target/nextflow/seqtk/seqtk_sample/main.nf"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/nextflow/seqtk/seqtk_sample/main.nf b/target/nextflow/seqtk/seqtk_sample/main.nf
index a543003d..8a0eaaf1 100644
--- a/target/nextflow/seqtk/seqtk_sample/main.nf
+++ b/target/nextflow/seqtk/seqtk_sample/main.nf
@@ -3260,9 +3260,9 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/seqtk/seqtk_sample",
     "viash_version" : "0.9.4",
-    "git_commit" : "219ba1d3d0d7fbc66393595534bb6c333b08b238",
+    "git_commit" : "f91567d467e6be79a5f71b24a54864ab13bdd278",
     "git_remote" : "https://github.com/viash-hub/biobox",
-    "git_tag" : "v0.2.0-37-g219ba1d"
+    "git_tag" : "v0.2.0-38-gf91567d"
   },
   "package_config" : {
     "name" : "biobox",
diff --git a/target/nextflow/seqtk/seqtk_subseq/.config.vsh.yaml b/target/nextflow/seqtk/seqtk_subseq/.config.vsh.yaml
index 7faf4c7e..7000bc51 100644
--- a/target/nextflow/seqtk/seqtk_subseq/.config.vsh.yaml
+++ b/target/nextflow/seqtk/seqtk_subseq/.config.vsh.yaml
@@ -195,9 +195,9 @@ build_info:
   output: "target/nextflow/seqtk/seqtk_subseq"
   executable: "target/nextflow/seqtk/seqtk_subseq/main.nf"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/nextflow/seqtk/seqtk_subseq/main.nf b/target/nextflow/seqtk/seqtk_subseq/main.nf
index 3f922a54..44a6612d 100644
--- a/target/nextflow/seqtk/seqtk_subseq/main.nf
+++ b/target/nextflow/seqtk/seqtk_subseq/main.nf
@@ -3283,9 +3283,9 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/seqtk/seqtk_subseq",
     "viash_version" : "0.9.4",
-    "git_commit" : "219ba1d3d0d7fbc66393595534bb6c333b08b238",
+    "git_commit" : "f91567d467e6be79a5f71b24a54864ab13bdd278",
     "git_remote" : "https://github.com/viash-hub/biobox",
-    "git_tag" : "v0.2.0-37-g219ba1d"
+    "git_tag" : "v0.2.0-38-gf91567d"
   },
   "package_config" : {
     "name" : "biobox",
diff --git a/target/nextflow/sgdemux/.config.vsh.yaml b/target/nextflow/sgdemux/.config.vsh.yaml
index 5cdccee2..cf03c949 100644
--- a/target/nextflow/sgdemux/.config.vsh.yaml
+++ b/target/nextflow/sgdemux/.config.vsh.yaml
@@ -432,9 +432,9 @@ build_info:
   output: "target/nextflow/sgdemux"
   executable: "target/nextflow/sgdemux/main.nf"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/nextflow/sgdemux/main.nf b/target/nextflow/sgdemux/main.nf
index a6deacc8..9897153e 100644
--- a/target/nextflow/sgdemux/main.nf
+++ b/target/nextflow/sgdemux/main.nf
@@ -3533,9 +3533,9 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/sgdemux",
     "viash_version" : "0.9.4",
-    "git_commit" : "219ba1d3d0d7fbc66393595534bb6c333b08b238",
+    "git_commit" : "f91567d467e6be79a5f71b24a54864ab13bdd278",
     "git_remote" : "https://github.com/viash-hub/biobox",
-    "git_tag" : "v0.2.0-37-g219ba1d"
+    "git_tag" : "v0.2.0-38-gf91567d"
   },
   "package_config" : {
     "name" : "biobox",
diff --git a/target/nextflow/snpeff/.config.vsh.yaml b/target/nextflow/snpeff/.config.vsh.yaml
index 0f79c48c..319a2fc6 100644
--- a/target/nextflow/snpeff/.config.vsh.yaml
+++ b/target/nextflow/snpeff/.config.vsh.yaml
@@ -631,9 +631,9 @@ build_info:
   output: "target/nextflow/snpeff"
   executable: "target/nextflow/snpeff/main.nf"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/nextflow/snpeff/main.nf b/target/nextflow/snpeff/main.nf
index 7d842b3d..72417ae4 100644
--- a/target/nextflow/snpeff/main.nf
+++ b/target/nextflow/snpeff/main.nf
@@ -3785,9 +3785,9 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/snpeff",
     "viash_version" : "0.9.4",
-    "git_commit" : "219ba1d3d0d7fbc66393595534bb6c333b08b238",
+    "git_commit" : "f91567d467e6be79a5f71b24a54864ab13bdd278",
     "git_remote" : "https://github.com/viash-hub/biobox",
-    "git_tag" : "v0.2.0-37-g219ba1d"
+    "git_tag" : "v0.2.0-38-gf91567d"
   },
   "package_config" : {
     "name" : "biobox",
diff --git a/target/nextflow/sortmerna/.config.vsh.yaml b/target/nextflow/sortmerna/.config.vsh.yaml
index 297da368..c1c6d353 100644
--- a/target/nextflow/sortmerna/.config.vsh.yaml
+++ b/target/nextflow/sortmerna/.config.vsh.yaml
@@ -597,9 +597,9 @@ build_info:
   output: "target/nextflow/sortmerna"
   executable: "target/nextflow/sortmerna/main.nf"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/nextflow/sortmerna/main.nf b/target/nextflow/sortmerna/main.nf
index 67f2036d..5c570536 100644
--- a/target/nextflow/sortmerna/main.nf
+++ b/target/nextflow/sortmerna/main.nf
@@ -3690,9 +3690,9 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/sortmerna",
     "viash_version" : "0.9.4",
-    "git_commit" : "219ba1d3d0d7fbc66393595534bb6c333b08b238",
+    "git_commit" : "f91567d467e6be79a5f71b24a54864ab13bdd278",
     "git_remote" : "https://github.com/viash-hub/biobox",
-    "git_tag" : "v0.2.0-37-g219ba1d"
+    "git_tag" : "v0.2.0-38-gf91567d"
   },
   "package_config" : {
     "name" : "biobox",
diff --git a/target/nextflow/star/star_align_reads/.config.vsh.yaml b/target/nextflow/star/star_align_reads/.config.vsh.yaml
index 5cfc03ea..21238a28 100644
--- a/target/nextflow/star/star_align_reads/.config.vsh.yaml
+++ b/target/nextflow/star/star_align_reads/.config.vsh.yaml
@@ -2666,9 +2666,9 @@ build_info:
   output: "target/nextflow/star/star_align_reads"
   executable: "target/nextflow/star/star_align_reads/main.nf"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/nextflow/star/star_align_reads/main.nf b/target/nextflow/star/star_align_reads/main.nf
index 4f1aafb2..7c8ee1bb 100644
--- a/target/nextflow/star/star_align_reads/main.nf
+++ b/target/nextflow/star/star_align_reads/main.nf
@@ -6173,9 +6173,9 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/star/star_align_reads",
     "viash_version" : "0.9.4",
-    "git_commit" : "219ba1d3d0d7fbc66393595534bb6c333b08b238",
+    "git_commit" : "f91567d467e6be79a5f71b24a54864ab13bdd278",
     "git_remote" : "https://github.com/viash-hub/biobox",
-    "git_tag" : "v0.2.0-37-g219ba1d"
+    "git_tag" : "v0.2.0-38-gf91567d"
   },
   "package_config" : {
     "name" : "biobox",
diff --git a/target/nextflow/star/star_genome_generate/.config.vsh.yaml b/target/nextflow/star/star_genome_generate/.config.vsh.yaml
index f7ec0383..24452f0e 100644
--- a/target/nextflow/star/star_genome_generate/.config.vsh.yaml
+++ b/target/nextflow/star/star_genome_generate/.config.vsh.yaml
@@ -331,9 +331,9 @@ build_info:
   output: "target/nextflow/star/star_genome_generate"
   executable: "target/nextflow/star/star_genome_generate/main.nf"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/nextflow/star/star_genome_generate/main.nf b/target/nextflow/star/star_genome_generate/main.nf
index 717378e1..6f4150b3 100644
--- a/target/nextflow/star/star_genome_generate/main.nf
+++ b/target/nextflow/star/star_genome_generate/main.nf
@@ -3417,9 +3417,9 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/star/star_genome_generate",
     "viash_version" : "0.9.4",
-    "git_commit" : "219ba1d3d0d7fbc66393595534bb6c333b08b238",
+    "git_commit" : "f91567d467e6be79a5f71b24a54864ab13bdd278",
     "git_remote" : "https://github.com/viash-hub/biobox",
-    "git_tag" : "v0.2.0-37-g219ba1d"
+    "git_tag" : "v0.2.0-38-gf91567d"
   },
   "package_config" : {
     "name" : "biobox",
diff --git a/target/nextflow/trimgalore/.config.vsh.yaml b/target/nextflow/trimgalore/.config.vsh.yaml
index 9f317eb6..b7c0c600 100644
--- a/target/nextflow/trimgalore/.config.vsh.yaml
+++ b/target/nextflow/trimgalore/.config.vsh.yaml
@@ -768,9 +768,9 @@ build_info:
   output: "target/nextflow/trimgalore"
   executable: "target/nextflow/trimgalore/main.nf"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/nextflow/trimgalore/main.nf b/target/nextflow/trimgalore/main.nf
index cf5bc055..d36e8230 100644
--- a/target/nextflow/trimgalore/main.nf
+++ b/target/nextflow/trimgalore/main.nf
@@ -3782,9 +3782,9 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/trimgalore",
     "viash_version" : "0.9.4",
-    "git_commit" : "219ba1d3d0d7fbc66393595534bb6c333b08b238",
+    "git_commit" : "f91567d467e6be79a5f71b24a54864ab13bdd278",
     "git_remote" : "https://github.com/viash-hub/biobox",
-    "git_tag" : "v0.2.0-37-g219ba1d"
+    "git_tag" : "v0.2.0-38-gf91567d"
   },
   "package_config" : {
     "name" : "biobox",
diff --git a/target/nextflow/umi_tools/umi_tools_dedup/.config.vsh.yaml b/target/nextflow/umi_tools/umi_tools_dedup/.config.vsh.yaml
index 454d5051..c0644007 100644
--- a/target/nextflow/umi_tools/umi_tools_dedup/.config.vsh.yaml
+++ b/target/nextflow/umi_tools/umi_tools_dedup/.config.vsh.yaml
@@ -609,9 +609,9 @@ build_info:
   output: "target/nextflow/umi_tools/umi_tools_dedup"
   executable: "target/nextflow/umi_tools/umi_tools_dedup/main.nf"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/nextflow/umi_tools/umi_tools_dedup/main.nf b/target/nextflow/umi_tools/umi_tools_dedup/main.nf
index 29057287..7b3d68d4 100644
--- a/target/nextflow/umi_tools/umi_tools_dedup/main.nf
+++ b/target/nextflow/umi_tools/umi_tools_dedup/main.nf
@@ -3709,9 +3709,9 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/umi_tools/umi_tools_dedup",
     "viash_version" : "0.9.4",
-    "git_commit" : "219ba1d3d0d7fbc66393595534bb6c333b08b238",
+    "git_commit" : "f91567d467e6be79a5f71b24a54864ab13bdd278",
     "git_remote" : "https://github.com/viash-hub/biobox",
-    "git_tag" : "v0.2.0-37-g219ba1d"
+    "git_tag" : "v0.2.0-38-gf91567d"
   },
   "package_config" : {
     "name" : "biobox",
diff --git a/target/nextflow/umi_tools/umi_tools_extract/.config.vsh.yaml b/target/nextflow/umi_tools/umi_tools_extract/.config.vsh.yaml
index 4648b07c..c3c2c25d 100644
--- a/target/nextflow/umi_tools/umi_tools_extract/.config.vsh.yaml
+++ b/target/nextflow/umi_tools/umi_tools_extract/.config.vsh.yaml
@@ -437,9 +437,9 @@ build_info:
   output: "target/nextflow/umi_tools/umi_tools_extract"
   executable: "target/nextflow/umi_tools/umi_tools_extract/main.nf"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/nextflow/umi_tools/umi_tools_extract/main.nf b/target/nextflow/umi_tools/umi_tools_extract/main.nf
index 593f5cb4..14286ced 100644
--- a/target/nextflow/umi_tools/umi_tools_extract/main.nf
+++ b/target/nextflow/umi_tools/umi_tools_extract/main.nf
@@ -3529,9 +3529,9 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/umi_tools/umi_tools_extract",
     "viash_version" : "0.9.4",
-    "git_commit" : "219ba1d3d0d7fbc66393595534bb6c333b08b238",
+    "git_commit" : "f91567d467e6be79a5f71b24a54864ab13bdd278",
     "git_remote" : "https://github.com/viash-hub/biobox",
-    "git_tag" : "v0.2.0-37-g219ba1d"
+    "git_tag" : "v0.2.0-38-gf91567d"
   },
   "package_config" : {
     "name" : "biobox",
diff --git a/target/nextflow/umi_tools/umi_tools_prepareforrsem/.config.vsh.yaml b/target/nextflow/umi_tools/umi_tools_prepareforrsem/.config.vsh.yaml
index 88213266..7b2147ea 100644
--- a/target/nextflow/umi_tools/umi_tools_prepareforrsem/.config.vsh.yaml
+++ b/target/nextflow/umi_tools/umi_tools_prepareforrsem/.config.vsh.yaml
@@ -259,9 +259,9 @@ build_info:
   output: "target/nextflow/umi_tools/umi_tools_prepareforrsem"
   executable: "target/nextflow/umi_tools/umi_tools_prepareforrsem/main.nf"
   viash_version: "0.9.4"
-  git_commit: "219ba1d3d0d7fbc66393595534bb6c333b08b238"
+  git_commit: "f91567d467e6be79a5f71b24a54864ab13bdd278"
   git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-37-g219ba1d"
+  git_tag: "v0.2.0-38-gf91567d"
 package_config:
   name: "biobox"
   version: "main"
diff --git a/target/nextflow/umi_tools/umi_tools_prepareforrsem/main.nf b/target/nextflow/umi_tools/umi_tools_prepareforrsem/main.nf
index 5e9ceef8..e2d29bb8 100644
--- a/target/nextflow/umi_tools/umi_tools_prepareforrsem/main.nf
+++ b/target/nextflow/umi_tools/umi_tools_prepareforrsem/main.nf
@@ -3351,9 +3351,9 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/umi_tools/umi_tools_prepareforrsem",
     "viash_version" : "0.9.4",
-    "git_commit" : "219ba1d3d0d7fbc66393595534bb6c333b08b238",
+    "git_commit" : "f91567d467e6be79a5f71b24a54864ab13bdd278",
     "git_remote" : "https://github.com/viash-hub/biobox",
-    "git_tag" : "v0.2.0-37-g219ba1d"
+    "git_tag" : "v0.2.0-38-gf91567d"
   },
   "package_config" : {
     "name" : "biobox",