From a11ca201bc81505a98703b59490d91d3effb73a7 Mon Sep 17 00:00:00 2001 From: CI Date: Thu, 19 Sep 2024 13:19:07 +0000 Subject: [PATCH] Build branch add_trimgalore with version add_trimgalore (6805838) Build pipeline: viash-hub.biobox.add-trimgalore-ptz8d Source commit: https://github.com/viash-hub/biobox/commit/6805838a0842a37d17685a5719668d185f6c8649 Source message: apply suggested change --- src/trimgalore/test.sh | 1 - .../executable/agat/agat_convert_bed2gff/.config.vsh.yaml | 6 +++--- .../agat/agat_convert_bed2gff/agat_convert_bed2gff | 4 ++-- .../executable/agat/agat_convert_embl2gff/.config.vsh.yaml | 6 +++--- .../agat/agat_convert_embl2gff/agat_convert_embl2gff | 4 ++-- .../agat/agat_convert_genscan2gff/.config.vsh.yaml | 6 +++--- .../agat/agat_convert_genscan2gff/agat_convert_genscan2gff | 4 ++-- .../agat/agat_convert_sp_gff2gtf/.config.vsh.yaml | 6 +++--- .../agat/agat_convert_sp_gff2gtf/agat_convert_sp_gff2gtf | 4 ++-- .../agat/agat_convert_sp_gff2tsv/.config.vsh.yaml | 6 +++--- .../agat/agat_convert_sp_gff2tsv/agat_convert_sp_gff2tsv | 4 ++-- .../agat/agat_convert_sp_gxf2gxf/.config.vsh.yaml | 6 +++--- .../agat/agat_convert_sp_gxf2gxf/agat_convert_sp_gxf2gxf | 4 ++-- target/executable/arriba/.config.vsh.yaml | 6 +++--- target/executable/arriba/arriba | 4 ++-- .../executable/bcftools/bcftools_annotate/.config.vsh.yaml | 6 +++--- .../executable/bcftools/bcftools_annotate/bcftools_annotate | 4 ++-- target/executable/bcftools/bcftools_concat/.config.vsh.yaml | 6 +++--- target/executable/bcftools/bcftools_concat/bcftools_concat | 4 ++-- target/executable/bcftools/bcftools_norm/.config.vsh.yaml | 6 +++--- target/executable/bcftools/bcftools_norm/bcftools_norm | 4 ++-- target/executable/bcftools/bcftools_sort/.config.vsh.yaml | 6 +++--- target/executable/bcftools/bcftools_sort/bcftools_sort | 4 ++-- target/executable/bcftools/bcftools_stats/.config.vsh.yaml | 6 +++--- target/executable/bcftools/bcftools_stats/bcftools_stats | 4 ++-- target/executable/bcl_convert/.config.vsh.yaml | 6 +++--- target/executable/bcl_convert/bcl_convert | 4 ++-- .../bd_rhapsody/bd_rhapsody_make_reference/.config.vsh.yaml | 6 +++--- .../bd_rhapsody_make_reference/bd_rhapsody_make_reference | 4 ++-- .../bd_rhapsody_sequence_analysis/.config.vsh.yaml | 6 +++--- .../bd_rhapsody_sequence_analysis | 4 ++-- .../bedtools/bedtools_bamtofastq/.config.vsh.yaml | 6 +++--- .../bedtools/bedtools_bamtofastq/bedtools_bamtofastq | 4 ++-- .../bedtools/bedtools_bed12tobed6/.config.vsh.yaml | 6 +++--- .../bedtools/bedtools_bed12tobed6/bedtools_bed12tobed6 | 4 ++-- .../executable/bedtools/bedtools_bedtobam/.config.vsh.yaml | 6 +++--- .../executable/bedtools/bedtools_bedtobam/bedtools_bedtobam | 4 ++-- .../executable/bedtools/bedtools_genomecov/.config.vsh.yaml | 6 +++--- .../bedtools/bedtools_genomecov/bedtools_genomecov | 4 ++-- .../executable/bedtools/bedtools_getfasta/.config.vsh.yaml | 6 +++--- .../executable/bedtools/bedtools_getfasta/bedtools_getfasta | 4 ++-- .../executable/bedtools/bedtools_groupby/.config.vsh.yaml | 6 +++--- .../executable/bedtools/bedtools_groupby/bedtools_groupby | 4 ++-- .../executable/bedtools/bedtools_intersect/.config.vsh.yaml | 6 +++--- .../bedtools/bedtools_intersect/bedtools_intersect | 4 ++-- target/executable/bedtools/bedtools_links/.config.vsh.yaml | 6 +++--- target/executable/bedtools/bedtools_links/bedtools_links | 4 ++-- target/executable/bedtools/bedtools_merge/.config.vsh.yaml | 6 +++--- target/executable/bedtools/bedtools_merge/bedtools_merge | 4 ++-- target/executable/bedtools/bedtools_sort/.config.vsh.yaml | 6 +++--- target/executable/bedtools/bedtools_sort/bedtools_sort | 4 ++-- .../busco/busco_download_datasets/.config.vsh.yaml | 6 +++--- .../busco/busco_download_datasets/busco_download_datasets | 4 ++-- .../executable/busco/busco_list_datasets/.config.vsh.yaml | 6 +++--- .../busco/busco_list_datasets/busco_list_datasets | 4 ++-- target/executable/busco/busco_run/.config.vsh.yaml | 6 +++--- target/executable/busco/busco_run/busco_run | 4 ++-- target/executable/cutadapt/.config.vsh.yaml | 6 +++--- target/executable/cutadapt/cutadapt | 4 ++-- target/executable/falco/.config.vsh.yaml | 6 +++--- target/executable/falco/falco | 4 ++-- target/executable/fastp/.config.vsh.yaml | 6 +++--- target/executable/fastp/fastp | 4 ++-- target/executable/fastqc/.config.vsh.yaml | 6 +++--- target/executable/fastqc/fastqc | 4 ++-- target/executable/featurecounts/.config.vsh.yaml | 6 +++--- target/executable/featurecounts/featurecounts | 4 ++-- target/executable/fq_subsample/.config.vsh.yaml | 6 +++--- target/executable/fq_subsample/fq_subsample | 4 ++-- target/executable/gffread/.config.vsh.yaml | 6 +++--- target/executable/gffread/gffread | 4 ++-- target/executable/kallisto/kallisto_index/.config.vsh.yaml | 6 +++--- target/executable/kallisto/kallisto_index/kallisto_index | 4 ++-- target/executable/kallisto/kallisto_quant/.config.vsh.yaml | 6 +++--- target/executable/kallisto/kallisto_quant/kallisto_quant | 4 ++-- target/executable/lofreq/lofreq_call/.config.vsh.yaml | 6 +++--- target/executable/lofreq/lofreq_call/lofreq_call | 4 ++-- target/executable/lofreq/lofreq_indelqual/.config.vsh.yaml | 6 +++--- target/executable/lofreq/lofreq_indelqual/lofreq_indelqual | 4 ++-- target/executable/multiqc/.config.vsh.yaml | 6 +++--- target/executable/multiqc/multiqc | 4 ++-- target/executable/pear/.config.vsh.yaml | 6 +++--- target/executable/pear/pear | 4 ++-- target/executable/qualimap/qualimap_rnaseq/.config.vsh.yaml | 6 +++--- target/executable/qualimap/qualimap_rnaseq/qualimap_rnaseq | 4 ++-- .../rsem/rsem_calculate_expression/.config.vsh.yaml | 6 +++--- .../rsem_calculate_expression/rsem_calculate_expression | 4 ++-- .../executable/rsem/rsem_prepare_reference/.config.vsh.yaml | 6 +++--- .../rsem/rsem_prepare_reference/rsem_prepare_reference | 4 ++-- target/executable/salmon/salmon_index/.config.vsh.yaml | 6 +++--- target/executable/salmon/salmon_index/salmon_index | 4 ++-- target/executable/salmon/salmon_quant/.config.vsh.yaml | 6 +++--- target/executable/salmon/salmon_quant/salmon_quant | 4 ++-- .../executable/samtools/samtools_collate/.config.vsh.yaml | 6 +++--- .../executable/samtools/samtools_collate/samtools_collate | 4 ++-- target/executable/samtools/samtools_faidx/.config.vsh.yaml | 6 +++--- target/executable/samtools/samtools_faidx/samtools_faidx | 4 ++-- target/executable/samtools/samtools_fasta/.config.vsh.yaml | 6 +++--- target/executable/samtools/samtools_fasta/samtools_fasta | 4 ++-- target/executable/samtools/samtools_fastq/.config.vsh.yaml | 6 +++--- target/executable/samtools/samtools_fastq/samtools_fastq | 4 ++-- .../executable/samtools/samtools_flagstat/.config.vsh.yaml | 6 +++--- .../executable/samtools/samtools_flagstat/samtools_flagstat | 4 ++-- .../executable/samtools/samtools_idxstats/.config.vsh.yaml | 6 +++--- .../executable/samtools/samtools_idxstats/samtools_idxstats | 4 ++-- target/executable/samtools/samtools_index/.config.vsh.yaml | 6 +++--- target/executable/samtools/samtools_index/samtools_index | 4 ++-- target/executable/samtools/samtools_sort/.config.vsh.yaml | 6 +++--- target/executable/samtools/samtools_sort/samtools_sort | 4 ++-- target/executable/samtools/samtools_stats/.config.vsh.yaml | 6 +++--- target/executable/samtools/samtools_stats/samtools_stats | 4 ++-- target/executable/samtools/samtools_view/.config.vsh.yaml | 6 +++--- target/executable/samtools/samtools_view/samtools_view | 4 ++-- target/executable/seqtk/seqtk_sample/.config.vsh.yaml | 6 +++--- target/executable/seqtk/seqtk_sample/seqtk_sample | 4 ++-- target/executable/seqtk/seqtk_subseq/.config.vsh.yaml | 6 +++--- target/executable/seqtk/seqtk_subseq/seqtk_subseq | 4 ++-- target/executable/sortmerna/.config.vsh.yaml | 6 +++--- target/executable/sortmerna/sortmerna | 4 ++-- target/executable/star/star_align_reads/.config.vsh.yaml | 6 +++--- target/executable/star/star_align_reads/star_align_reads | 4 ++-- .../executable/star/star_genome_generate/.config.vsh.yaml | 6 +++--- .../star/star_genome_generate/star_genome_generate | 4 ++-- target/executable/trimgalore/.config.vsh.yaml | 6 +++--- target/executable/trimgalore/trimgalore | 4 ++-- .../executable/umi_tools/umi_tools_dedup/.config.vsh.yaml | 6 +++--- target/executable/umi_tools/umi_tools_dedup/umi_tools_dedup | 4 ++-- .../executable/umi_tools/umi_tools_extract/.config.vsh.yaml | 6 +++--- .../umi_tools/umi_tools_extract/umi_tools_extract | 4 ++-- .../umi_tools/umi_tools_prepareforrsem/.config.vsh.yaml | 6 +++--- .../umi_tools_prepareforrsem/umi_tools_prepareforrsem | 4 ++-- target/nextflow/agat/agat_convert_bed2gff/.config.vsh.yaml | 6 +++--- target/nextflow/agat/agat_convert_bed2gff/main.nf | 6 +++--- target/nextflow/agat/agat_convert_embl2gff/.config.vsh.yaml | 6 +++--- target/nextflow/agat/agat_convert_embl2gff/main.nf | 6 +++--- .../nextflow/agat/agat_convert_genscan2gff/.config.vsh.yaml | 6 +++--- target/nextflow/agat/agat_convert_genscan2gff/main.nf | 6 +++--- .../nextflow/agat/agat_convert_sp_gff2gtf/.config.vsh.yaml | 6 +++--- target/nextflow/agat/agat_convert_sp_gff2gtf/main.nf | 6 +++--- .../nextflow/agat/agat_convert_sp_gff2tsv/.config.vsh.yaml | 6 +++--- target/nextflow/agat/agat_convert_sp_gff2tsv/main.nf | 6 +++--- .../nextflow/agat/agat_convert_sp_gxf2gxf/.config.vsh.yaml | 6 +++--- target/nextflow/agat/agat_convert_sp_gxf2gxf/main.nf | 6 +++--- target/nextflow/arriba/.config.vsh.yaml | 6 +++--- target/nextflow/arriba/main.nf | 6 +++--- target/nextflow/bcftools/bcftools_annotate/.config.vsh.yaml | 6 +++--- target/nextflow/bcftools/bcftools_annotate/main.nf | 6 +++--- target/nextflow/bcftools/bcftools_concat/.config.vsh.yaml | 6 +++--- target/nextflow/bcftools/bcftools_concat/main.nf | 6 +++--- target/nextflow/bcftools/bcftools_norm/.config.vsh.yaml | 6 +++--- target/nextflow/bcftools/bcftools_norm/main.nf | 6 +++--- target/nextflow/bcftools/bcftools_sort/.config.vsh.yaml | 6 +++--- target/nextflow/bcftools/bcftools_sort/main.nf | 6 +++--- target/nextflow/bcftools/bcftools_stats/.config.vsh.yaml | 6 +++--- target/nextflow/bcftools/bcftools_stats/main.nf | 6 +++--- target/nextflow/bcl_convert/.config.vsh.yaml | 6 +++--- target/nextflow/bcl_convert/main.nf | 6 +++--- .../bd_rhapsody/bd_rhapsody_make_reference/.config.vsh.yaml | 6 +++--- .../nextflow/bd_rhapsody/bd_rhapsody_make_reference/main.nf | 6 +++--- .../bd_rhapsody_sequence_analysis/.config.vsh.yaml | 6 +++--- .../bd_rhapsody/bd_rhapsody_sequence_analysis/main.nf | 6 +++--- .../nextflow/bedtools/bedtools_bamtofastq/.config.vsh.yaml | 6 +++--- target/nextflow/bedtools/bedtools_bamtofastq/main.nf | 6 +++--- .../nextflow/bedtools/bedtools_bed12tobed6/.config.vsh.yaml | 6 +++--- target/nextflow/bedtools/bedtools_bed12tobed6/main.nf | 6 +++--- target/nextflow/bedtools/bedtools_bedtobam/.config.vsh.yaml | 6 +++--- target/nextflow/bedtools/bedtools_bedtobam/main.nf | 6 +++--- .../nextflow/bedtools/bedtools_genomecov/.config.vsh.yaml | 6 +++--- target/nextflow/bedtools/bedtools_genomecov/main.nf | 6 +++--- target/nextflow/bedtools/bedtools_getfasta/.config.vsh.yaml | 6 +++--- target/nextflow/bedtools/bedtools_getfasta/main.nf | 6 +++--- target/nextflow/bedtools/bedtools_groupby/.config.vsh.yaml | 6 +++--- target/nextflow/bedtools/bedtools_groupby/main.nf | 6 +++--- .../nextflow/bedtools/bedtools_intersect/.config.vsh.yaml | 6 +++--- target/nextflow/bedtools/bedtools_intersect/main.nf | 6 +++--- target/nextflow/bedtools/bedtools_links/.config.vsh.yaml | 6 +++--- target/nextflow/bedtools/bedtools_links/main.nf | 6 +++--- target/nextflow/bedtools/bedtools_merge/.config.vsh.yaml | 6 +++--- target/nextflow/bedtools/bedtools_merge/main.nf | 6 +++--- target/nextflow/bedtools/bedtools_sort/.config.vsh.yaml | 6 +++--- target/nextflow/bedtools/bedtools_sort/main.nf | 6 +++--- .../nextflow/busco/busco_download_datasets/.config.vsh.yaml | 6 +++--- target/nextflow/busco/busco_download_datasets/main.nf | 6 +++--- target/nextflow/busco/busco_list_datasets/.config.vsh.yaml | 6 +++--- target/nextflow/busco/busco_list_datasets/main.nf | 6 +++--- target/nextflow/busco/busco_run/.config.vsh.yaml | 6 +++--- target/nextflow/busco/busco_run/main.nf | 6 +++--- target/nextflow/cutadapt/.config.vsh.yaml | 6 +++--- target/nextflow/cutadapt/main.nf | 6 +++--- target/nextflow/falco/.config.vsh.yaml | 6 +++--- target/nextflow/falco/main.nf | 6 +++--- target/nextflow/fastp/.config.vsh.yaml | 6 +++--- target/nextflow/fastp/main.nf | 6 +++--- target/nextflow/fastqc/.config.vsh.yaml | 6 +++--- target/nextflow/fastqc/main.nf | 6 +++--- target/nextflow/featurecounts/.config.vsh.yaml | 6 +++--- target/nextflow/featurecounts/main.nf | 6 +++--- target/nextflow/fq_subsample/.config.vsh.yaml | 6 +++--- target/nextflow/fq_subsample/main.nf | 6 +++--- target/nextflow/gffread/.config.vsh.yaml | 6 +++--- target/nextflow/gffread/main.nf | 6 +++--- target/nextflow/kallisto/kallisto_index/.config.vsh.yaml | 6 +++--- target/nextflow/kallisto/kallisto_index/main.nf | 6 +++--- target/nextflow/kallisto/kallisto_quant/.config.vsh.yaml | 6 +++--- target/nextflow/kallisto/kallisto_quant/main.nf | 6 +++--- target/nextflow/lofreq/lofreq_call/.config.vsh.yaml | 6 +++--- target/nextflow/lofreq/lofreq_call/main.nf | 6 +++--- target/nextflow/lofreq/lofreq_indelqual/.config.vsh.yaml | 6 +++--- target/nextflow/lofreq/lofreq_indelqual/main.nf | 6 +++--- target/nextflow/multiqc/.config.vsh.yaml | 6 +++--- target/nextflow/multiqc/main.nf | 6 +++--- target/nextflow/pear/.config.vsh.yaml | 6 +++--- target/nextflow/pear/main.nf | 6 +++--- target/nextflow/qualimap/qualimap_rnaseq/.config.vsh.yaml | 6 +++--- target/nextflow/qualimap/qualimap_rnaseq/main.nf | 6 +++--- .../rsem/rsem_calculate_expression/.config.vsh.yaml | 6 +++--- target/nextflow/rsem/rsem_calculate_expression/main.nf | 6 +++--- .../nextflow/rsem/rsem_prepare_reference/.config.vsh.yaml | 6 +++--- target/nextflow/rsem/rsem_prepare_reference/main.nf | 6 +++--- target/nextflow/salmon/salmon_index/.config.vsh.yaml | 6 +++--- target/nextflow/salmon/salmon_index/main.nf | 6 +++--- target/nextflow/salmon/salmon_quant/.config.vsh.yaml | 6 +++--- target/nextflow/salmon/salmon_quant/main.nf | 6 +++--- target/nextflow/samtools/samtools_collate/.config.vsh.yaml | 6 +++--- target/nextflow/samtools/samtools_collate/main.nf | 6 +++--- target/nextflow/samtools/samtools_faidx/.config.vsh.yaml | 6 +++--- target/nextflow/samtools/samtools_faidx/main.nf | 6 +++--- target/nextflow/samtools/samtools_fasta/.config.vsh.yaml | 6 +++--- target/nextflow/samtools/samtools_fasta/main.nf | 6 +++--- target/nextflow/samtools/samtools_fastq/.config.vsh.yaml | 6 +++--- target/nextflow/samtools/samtools_fastq/main.nf | 6 +++--- target/nextflow/samtools/samtools_flagstat/.config.vsh.yaml | 6 +++--- target/nextflow/samtools/samtools_flagstat/main.nf | 6 +++--- target/nextflow/samtools/samtools_idxstats/.config.vsh.yaml | 6 +++--- target/nextflow/samtools/samtools_idxstats/main.nf | 6 +++--- target/nextflow/samtools/samtools_index/.config.vsh.yaml | 6 +++--- target/nextflow/samtools/samtools_index/main.nf | 6 +++--- target/nextflow/samtools/samtools_sort/.config.vsh.yaml | 6 +++--- target/nextflow/samtools/samtools_sort/main.nf | 6 +++--- target/nextflow/samtools/samtools_stats/.config.vsh.yaml | 6 +++--- target/nextflow/samtools/samtools_stats/main.nf | 6 +++--- target/nextflow/samtools/samtools_view/.config.vsh.yaml | 6 +++--- target/nextflow/samtools/samtools_view/main.nf | 6 +++--- target/nextflow/seqtk/seqtk_sample/.config.vsh.yaml | 6 +++--- target/nextflow/seqtk/seqtk_sample/main.nf | 6 +++--- target/nextflow/seqtk/seqtk_subseq/.config.vsh.yaml | 6 +++--- target/nextflow/seqtk/seqtk_subseq/main.nf | 6 +++--- target/nextflow/sortmerna/.config.vsh.yaml | 6 +++--- target/nextflow/sortmerna/main.nf | 6 +++--- target/nextflow/star/star_align_reads/.config.vsh.yaml | 6 +++--- target/nextflow/star/star_align_reads/main.nf | 6 +++--- target/nextflow/star/star_genome_generate/.config.vsh.yaml | 6 +++--- target/nextflow/star/star_genome_generate/main.nf | 6 +++--- target/nextflow/trimgalore/.config.vsh.yaml | 6 +++--- target/nextflow/trimgalore/main.nf | 6 +++--- target/nextflow/umi_tools/umi_tools_dedup/.config.vsh.yaml | 6 +++--- target/nextflow/umi_tools/umi_tools_dedup/main.nf | 6 +++--- .../nextflow/umi_tools/umi_tools_extract/.config.vsh.yaml | 6 +++--- target/nextflow/umi_tools/umi_tools_extract/main.nf | 6 +++--- .../umi_tools/umi_tools_prepareforrsem/.config.vsh.yaml | 6 +++--- target/nextflow/umi_tools/umi_tools_prepareforrsem/main.nf | 6 +++--- 261 files changed, 715 insertions(+), 716 deletions(-) diff --git a/src/trimgalore/test.sh b/src/trimgalore/test.sh index 8e93e43e..8cb3ccdb 100644 --- a/src/trimgalore/test.sh +++ b/src/trimgalore/test.sh @@ -1,6 +1,5 @@ #!/bin/bash -set -e set -eo pipefail # helper functions diff --git a/target/executable/agat/agat_convert_bed2gff/.config.vsh.yaml b/target/executable/agat/agat_convert_bed2gff/.config.vsh.yaml index 498762ec..0caa802b 100644 --- a/target/executable/agat/agat_convert_bed2gff/.config.vsh.yaml +++ b/target/executable/agat/agat_convert_bed2gff/.config.vsh.yaml @@ -235,9 +235,9 @@ build_info: output: "target/executable/agat/agat_convert_bed2gff" executable: "target/executable/agat/agat_convert_bed2gff/agat_convert_bed2gff" viash_version: "0.9.0" - git_commit: "58fff63a79486cc6ef8154ce25968f0d33233bbd" - git_remote: "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox" - git_tag: "v0.2.0-17-g58fff63" + git_commit: "6805838a0842a37d17685a5719668d185f6c8649" + git_remote: "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-18-g6805838" package_config: name: "biobox" version: "add_trimgalore" diff --git a/target/executable/agat/agat_convert_bed2gff/agat_convert_bed2gff b/target/executable/agat/agat_convert_bed2gff/agat_convert_bed2gff index e3196cf9..5d32ead3 100755 --- a/target/executable/agat/agat_convert_bed2gff/agat_convert_bed2gff +++ b/target/executable/agat/agat_convert_bed2gff/agat_convert_bed2gff @@ -515,9 +515,9 @@ RUN agat --version | sed 's/AGAT\s\(.*\)/agat: "\1"/' > /var/software_versions.t LABEL org.opencontainers.image.authors="Leïla Paquay" LABEL org.opencontainers.image.description="Companion container for running component agat agat_convert_bed2gff" -LABEL org.opencontainers.image.created="2024-09-19T09:11:38Z" +LABEL org.opencontainers.image.created="2024-09-19T12:59:47Z" LABEL org.opencontainers.image.source="https://github.com/NBISweden/AGAT" -LABEL org.opencontainers.image.revision="58fff63a79486cc6ef8154ce25968f0d33233bbd" +LABEL org.opencontainers.image.revision="6805838a0842a37d17685a5719668d185f6c8649" LABEL org.opencontainers.image.version="add_trimgalore" VIASHDOCKER diff --git a/target/executable/agat/agat_convert_embl2gff/.config.vsh.yaml b/target/executable/agat/agat_convert_embl2gff/.config.vsh.yaml index 76e75241..71e0ce20 100644 --- a/target/executable/agat/agat_convert_embl2gff/.config.vsh.yaml +++ b/target/executable/agat/agat_convert_embl2gff/.config.vsh.yaml @@ -225,9 +225,9 @@ build_info: output: "target/executable/agat/agat_convert_embl2gff" executable: "target/executable/agat/agat_convert_embl2gff/agat_convert_embl2gff" viash_version: "0.9.0" - git_commit: "58fff63a79486cc6ef8154ce25968f0d33233bbd" - git_remote: "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox" - git_tag: "v0.2.0-17-g58fff63" + git_commit: "6805838a0842a37d17685a5719668d185f6c8649" + git_remote: "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-18-g6805838" package_config: name: "biobox" version: "add_trimgalore" diff --git a/target/executable/agat/agat_convert_embl2gff/agat_convert_embl2gff b/target/executable/agat/agat_convert_embl2gff/agat_convert_embl2gff index 187f7c6c..29de6fff 100755 --- a/target/executable/agat/agat_convert_embl2gff/agat_convert_embl2gff +++ b/target/executable/agat/agat_convert_embl2gff/agat_convert_embl2gff @@ -505,9 +505,9 @@ RUN agat --version | sed 's/AGAT\s\(.*\)/agat: "\1"/' > /var/software_versions.t LABEL org.opencontainers.image.authors="Leïla Paquay" LABEL org.opencontainers.image.description="Companion container for running component agat agat_convert_embl2gff" -LABEL org.opencontainers.image.created="2024-09-19T09:11:37Z" +LABEL org.opencontainers.image.created="2024-09-19T12:59:47Z" LABEL org.opencontainers.image.source="https://github.com/NBISweden/AGAT" -LABEL org.opencontainers.image.revision="58fff63a79486cc6ef8154ce25968f0d33233bbd" +LABEL org.opencontainers.image.revision="6805838a0842a37d17685a5719668d185f6c8649" LABEL org.opencontainers.image.version="add_trimgalore" VIASHDOCKER diff --git a/target/executable/agat/agat_convert_genscan2gff/.config.vsh.yaml b/target/executable/agat/agat_convert_genscan2gff/.config.vsh.yaml index 5ee31ff0..d6d59866 100644 --- a/target/executable/agat/agat_convert_genscan2gff/.config.vsh.yaml +++ b/target/executable/agat/agat_convert_genscan2gff/.config.vsh.yaml @@ -230,9 +230,9 @@ build_info: output: "target/executable/agat/agat_convert_genscan2gff" executable: "target/executable/agat/agat_convert_genscan2gff/agat_convert_genscan2gff" viash_version: "0.9.0" - git_commit: "58fff63a79486cc6ef8154ce25968f0d33233bbd" - git_remote: "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox" - git_tag: "v0.2.0-17-g58fff63" + git_commit: "6805838a0842a37d17685a5719668d185f6c8649" + git_remote: "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-18-g6805838" package_config: name: "biobox" version: "add_trimgalore" diff --git a/target/executable/agat/agat_convert_genscan2gff/agat_convert_genscan2gff b/target/executable/agat/agat_convert_genscan2gff/agat_convert_genscan2gff index efb3df13..506a741e 100755 --- a/target/executable/agat/agat_convert_genscan2gff/agat_convert_genscan2gff +++ b/target/executable/agat/agat_convert_genscan2gff/agat_convert_genscan2gff @@ -514,9 +514,9 @@ RUN agat --version | sed 's/AGAT\s\(.*\)/agat: "\1"/' > /var/software_versions.t LABEL org.opencontainers.image.authors="Leïla Paquay" LABEL org.opencontainers.image.description="Companion container for running component agat agat_convert_genscan2gff" -LABEL org.opencontainers.image.created="2024-09-19T09:11:38Z" +LABEL org.opencontainers.image.created="2024-09-19T12:59:48Z" LABEL org.opencontainers.image.source="https://github.com/NBISweden/AGAT" -LABEL org.opencontainers.image.revision="58fff63a79486cc6ef8154ce25968f0d33233bbd" +LABEL org.opencontainers.image.revision="6805838a0842a37d17685a5719668d185f6c8649" LABEL org.opencontainers.image.version="add_trimgalore" VIASHDOCKER diff --git a/target/executable/agat/agat_convert_sp_gff2gtf/.config.vsh.yaml b/target/executable/agat/agat_convert_sp_gff2gtf/.config.vsh.yaml index f906dbbc..005e7cef 100644 --- a/target/executable/agat/agat_convert_sp_gff2gtf/.config.vsh.yaml +++ b/target/executable/agat/agat_convert_sp_gff2gtf/.config.vsh.yaml @@ -228,9 +228,9 @@ build_info: output: "target/executable/agat/agat_convert_sp_gff2gtf" executable: "target/executable/agat/agat_convert_sp_gff2gtf/agat_convert_sp_gff2gtf" viash_version: "0.9.0" - git_commit: "58fff63a79486cc6ef8154ce25968f0d33233bbd" - git_remote: "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox" - git_tag: "v0.2.0-17-g58fff63" + git_commit: "6805838a0842a37d17685a5719668d185f6c8649" + git_remote: "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-18-g6805838" package_config: name: "biobox" version: "add_trimgalore" diff --git a/target/executable/agat/agat_convert_sp_gff2gtf/agat_convert_sp_gff2gtf b/target/executable/agat/agat_convert_sp_gff2gtf/agat_convert_sp_gff2gtf index 6b4a7821..02d71ac8 100755 --- a/target/executable/agat/agat_convert_sp_gff2gtf/agat_convert_sp_gff2gtf +++ b/target/executable/agat/agat_convert_sp_gff2gtf/agat_convert_sp_gff2gtf @@ -519,9 +519,9 @@ RUN agat --version | sed 's/AGAT\s\(.*\)/agat: "\1"/' > /var/software_versions.t LABEL org.opencontainers.image.authors="Leïla Paquay" LABEL org.opencontainers.image.description="Companion container for running component agat agat_convert_sp_gff2gtf" -LABEL org.opencontainers.image.created="2024-09-19T09:11:38Z" +LABEL org.opencontainers.image.created="2024-09-19T12:59:47Z" LABEL org.opencontainers.image.source="https://github.com/NBISweden/AGAT" -LABEL org.opencontainers.image.revision="58fff63a79486cc6ef8154ce25968f0d33233bbd" +LABEL org.opencontainers.image.revision="6805838a0842a37d17685a5719668d185f6c8649" LABEL org.opencontainers.image.version="add_trimgalore" VIASHDOCKER diff --git a/target/executable/agat/agat_convert_sp_gff2tsv/.config.vsh.yaml b/target/executable/agat/agat_convert_sp_gff2tsv/.config.vsh.yaml index f5752e50..4cb4ebe4 100644 --- a/target/executable/agat/agat_convert_sp_gff2tsv/.config.vsh.yaml +++ b/target/executable/agat/agat_convert_sp_gff2tsv/.config.vsh.yaml @@ -188,9 +188,9 @@ build_info: output: "target/executable/agat/agat_convert_sp_gff2tsv" executable: "target/executable/agat/agat_convert_sp_gff2tsv/agat_convert_sp_gff2tsv" viash_version: "0.9.0" - git_commit: "58fff63a79486cc6ef8154ce25968f0d33233bbd" - git_remote: "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox" - git_tag: "v0.2.0-17-g58fff63" + git_commit: "6805838a0842a37d17685a5719668d185f6c8649" + git_remote: "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-18-g6805838" package_config: name: "biobox" version: "add_trimgalore" diff --git a/target/executable/agat/agat_convert_sp_gff2tsv/agat_convert_sp_gff2tsv b/target/executable/agat/agat_convert_sp_gff2tsv/agat_convert_sp_gff2tsv index 6304801c..a4f72a90 100755 --- a/target/executable/agat/agat_convert_sp_gff2tsv/agat_convert_sp_gff2tsv +++ b/target/executable/agat/agat_convert_sp_gff2tsv/agat_convert_sp_gff2tsv @@ -484,9 +484,9 @@ RUN agat --version | sed 's/AGAT\s\(.*\)/agat: "\1"/' > /var/software_versions.t LABEL org.opencontainers.image.authors="Leïla Paquay" LABEL org.opencontainers.image.description="Companion container for running component agat agat_convert_sp_gff2tsv" -LABEL org.opencontainers.image.created="2024-09-19T09:11:37Z" +LABEL org.opencontainers.image.created="2024-09-19T12:59:47Z" LABEL org.opencontainers.image.source="https://github.com/NBISweden/AGAT" -LABEL org.opencontainers.image.revision="58fff63a79486cc6ef8154ce25968f0d33233bbd" +LABEL org.opencontainers.image.revision="6805838a0842a37d17685a5719668d185f6c8649" LABEL org.opencontainers.image.version="add_trimgalore" VIASHDOCKER diff --git a/target/executable/agat/agat_convert_sp_gxf2gxf/.config.vsh.yaml b/target/executable/agat/agat_convert_sp_gxf2gxf/.config.vsh.yaml index a1ecb13f..a6fe28e8 100644 --- a/target/executable/agat/agat_convert_sp_gxf2gxf/.config.vsh.yaml +++ b/target/executable/agat/agat_convert_sp_gxf2gxf/.config.vsh.yaml @@ -195,9 +195,9 @@ build_info: output: "target/executable/agat/agat_convert_sp_gxf2gxf" executable: "target/executable/agat/agat_convert_sp_gxf2gxf/agat_convert_sp_gxf2gxf" viash_version: "0.9.0" - git_commit: "58fff63a79486cc6ef8154ce25968f0d33233bbd" - git_remote: "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox" - git_tag: "v0.2.0-17-g58fff63" + git_commit: "6805838a0842a37d17685a5719668d185f6c8649" + git_remote: "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-18-g6805838" package_config: name: "biobox" version: "add_trimgalore" diff --git a/target/executable/agat/agat_convert_sp_gxf2gxf/agat_convert_sp_gxf2gxf b/target/executable/agat/agat_convert_sp_gxf2gxf/agat_convert_sp_gxf2gxf index 97f65521..d772928f 100755 --- a/target/executable/agat/agat_convert_sp_gxf2gxf/agat_convert_sp_gxf2gxf +++ b/target/executable/agat/agat_convert_sp_gxf2gxf/agat_convert_sp_gxf2gxf @@ -493,9 +493,9 @@ RUN agat --version | sed 's/AGAT\s\(.*\)/agat: "\1"/' > /var/software_versions.t LABEL org.opencontainers.image.authors="Leïla Paquay" LABEL org.opencontainers.image.description="Companion container for running component agat agat_convert_sp_gxf2gxf" -LABEL org.opencontainers.image.created="2024-09-19T09:11:37Z" +LABEL org.opencontainers.image.created="2024-09-19T12:59:46Z" LABEL org.opencontainers.image.source="https://github.com/NBISweden/AGAT" -LABEL org.opencontainers.image.revision="58fff63a79486cc6ef8154ce25968f0d33233bbd" +LABEL org.opencontainers.image.revision="6805838a0842a37d17685a5719668d185f6c8649" LABEL org.opencontainers.image.version="add_trimgalore" VIASHDOCKER diff --git a/target/executable/arriba/.config.vsh.yaml b/target/executable/arriba/.config.vsh.yaml index 3413c5fd..30be120a 100644 --- a/target/executable/arriba/.config.vsh.yaml +++ b/target/executable/arriba/.config.vsh.yaml @@ -706,9 +706,9 @@ build_info: output: "target/executable/arriba" executable: "target/executable/arriba/arriba" viash_version: "0.9.0" - git_commit: "58fff63a79486cc6ef8154ce25968f0d33233bbd" - git_remote: "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox" - git_tag: "v0.2.0-17-g58fff63" + git_commit: "6805838a0842a37d17685a5719668d185f6c8649" + git_remote: "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-18-g6805838" package_config: name: "biobox" version: "add_trimgalore" diff --git a/target/executable/arriba/arriba b/target/executable/arriba/arriba index 388c9edd..b9b2bbd1 100755 --- a/target/executable/arriba/arriba +++ b/target/executable/arriba/arriba @@ -754,9 +754,9 @@ RUN arriba -h | grep 'Version:' 2>&1 | sed 's/Version:\s\(.*\)/arriba: "\1"/' > LABEL org.opencontainers.image.authors="Robrecht Cannoodt" LABEL org.opencontainers.image.description="Companion container for running component arriba" -LABEL org.opencontainers.image.created="2024-09-19T09:11:40Z" +LABEL org.opencontainers.image.created="2024-09-19T12:59:50Z" LABEL org.opencontainers.image.source="https://github.com/suhrig/arriba" -LABEL org.opencontainers.image.revision="58fff63a79486cc6ef8154ce25968f0d33233bbd" +LABEL org.opencontainers.image.revision="6805838a0842a37d17685a5719668d185f6c8649" LABEL org.opencontainers.image.version="add_trimgalore" VIASHDOCKER diff --git a/target/executable/bcftools/bcftools_annotate/.config.vsh.yaml b/target/executable/bcftools/bcftools_annotate/.config.vsh.yaml index dab49928..54bea13b 100644 --- a/target/executable/bcftools/bcftools_annotate/.config.vsh.yaml +++ b/target/executable/bcftools/bcftools_annotate/.config.vsh.yaml @@ -469,9 +469,9 @@ build_info: output: "target/executable/bcftools/bcftools_annotate" executable: "target/executable/bcftools/bcftools_annotate/bcftools_annotate" viash_version: "0.9.0" - git_commit: "58fff63a79486cc6ef8154ce25968f0d33233bbd" - git_remote: "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox" - git_tag: "v0.2.0-17-g58fff63" + git_commit: "6805838a0842a37d17685a5719668d185f6c8649" + git_remote: "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-18-g6805838" package_config: name: "biobox" version: "add_trimgalore" diff --git a/target/executable/bcftools/bcftools_annotate/bcftools_annotate b/target/executable/bcftools/bcftools_annotate/bcftools_annotate index 239f3080..270379e1 100755 --- a/target/executable/bcftools/bcftools_annotate/bcftools_annotate +++ b/target/executable/bcftools/bcftools_annotate/bcftools_annotate @@ -650,9 +650,9 @@ RUN echo "bcftools: \"$(bcftools --version | grep 'bcftools' | sed -n 's/^bcftoo LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo" LABEL org.opencontainers.image.description="Companion container for running component bcftools bcftools_annotate" -LABEL org.opencontainers.image.created="2024-09-19T09:11:31Z" +LABEL org.opencontainers.image.created="2024-09-19T12:59:39Z" LABEL org.opencontainers.image.source="https://github.com/samtools/bcftools" -LABEL org.opencontainers.image.revision="58fff63a79486cc6ef8154ce25968f0d33233bbd" +LABEL org.opencontainers.image.revision="6805838a0842a37d17685a5719668d185f6c8649" LABEL org.opencontainers.image.version="add_trimgalore" VIASHDOCKER diff --git a/target/executable/bcftools/bcftools_concat/.config.vsh.yaml b/target/executable/bcftools/bcftools_concat/.config.vsh.yaml index e2a4a320..2afae9d2 100644 --- a/target/executable/bcftools/bcftools_concat/.config.vsh.yaml +++ b/target/executable/bcftools/bcftools_concat/.config.vsh.yaml @@ -335,9 +335,9 @@ build_info: output: "target/executable/bcftools/bcftools_concat" executable: "target/executable/bcftools/bcftools_concat/bcftools_concat" viash_version: "0.9.0" - git_commit: "58fff63a79486cc6ef8154ce25968f0d33233bbd" - git_remote: "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox" - git_tag: "v0.2.0-17-g58fff63" + git_commit: "6805838a0842a37d17685a5719668d185f6c8649" + git_remote: "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-18-g6805838" package_config: name: "biobox" version: "add_trimgalore" diff --git a/target/executable/bcftools/bcftools_concat/bcftools_concat b/target/executable/bcftools/bcftools_concat/bcftools_concat index 826c622b..00f65952 100755 --- a/target/executable/bcftools/bcftools_concat/bcftools_concat +++ b/target/executable/bcftools/bcftools_concat/bcftools_concat @@ -566,9 +566,9 @@ RUN echo "bcftools: \"$(bcftools --version | grep 'bcftools' | sed -n 's/^bcftoo LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo" LABEL org.opencontainers.image.description="Companion container for running component bcftools bcftools_concat" -LABEL org.opencontainers.image.created="2024-09-19T09:11:31Z" +LABEL org.opencontainers.image.created="2024-09-19T12:59:40Z" LABEL org.opencontainers.image.source="https://github.com/samtools/bcftools" -LABEL org.opencontainers.image.revision="58fff63a79486cc6ef8154ce25968f0d33233bbd" +LABEL org.opencontainers.image.revision="6805838a0842a37d17685a5719668d185f6c8649" LABEL org.opencontainers.image.version="add_trimgalore" VIASHDOCKER diff --git a/target/executable/bcftools/bcftools_norm/.config.vsh.yaml b/target/executable/bcftools/bcftools_norm/.config.vsh.yaml index d7e50376..a2474021 100644 --- a/target/executable/bcftools/bcftools_norm/.config.vsh.yaml +++ b/target/executable/bcftools/bcftools_norm/.config.vsh.yaml @@ -416,9 +416,9 @@ build_info: output: "target/executable/bcftools/bcftools_norm" executable: "target/executable/bcftools/bcftools_norm/bcftools_norm" viash_version: "0.9.0" - git_commit: "58fff63a79486cc6ef8154ce25968f0d33233bbd" - git_remote: "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox" - git_tag: "v0.2.0-17-g58fff63" + git_commit: "6805838a0842a37d17685a5719668d185f6c8649" + git_remote: "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-18-g6805838" package_config: name: "biobox" version: "add_trimgalore" diff --git a/target/executable/bcftools/bcftools_norm/bcftools_norm b/target/executable/bcftools/bcftools_norm/bcftools_norm index 7f36348a..d8046530 100755 --- a/target/executable/bcftools/bcftools_norm/bcftools_norm +++ b/target/executable/bcftools/bcftools_norm/bcftools_norm @@ -589,9 +589,9 @@ RUN echo "bcftools: \"$(bcftools --version | grep 'bcftools' | sed -n 's/^bcftoo LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo" LABEL org.opencontainers.image.description="Companion container for running component bcftools bcftools_norm" -LABEL org.opencontainers.image.created="2024-09-19T09:11:32Z" +LABEL org.opencontainers.image.created="2024-09-19T12:59:41Z" LABEL org.opencontainers.image.source="https://github.com/samtools/bcftools" -LABEL org.opencontainers.image.revision="58fff63a79486cc6ef8154ce25968f0d33233bbd" +LABEL org.opencontainers.image.revision="6805838a0842a37d17685a5719668d185f6c8649" LABEL org.opencontainers.image.version="add_trimgalore" VIASHDOCKER diff --git a/target/executable/bcftools/bcftools_sort/.config.vsh.yaml b/target/executable/bcftools/bcftools_sort/.config.vsh.yaml index f08a4973..b484ed1d 100644 --- a/target/executable/bcftools/bcftools_sort/.config.vsh.yaml +++ b/target/executable/bcftools/bcftools_sort/.config.vsh.yaml @@ -185,9 +185,9 @@ build_info: output: "target/executable/bcftools/bcftools_sort" executable: "target/executable/bcftools/bcftools_sort/bcftools_sort" viash_version: "0.9.0" - git_commit: "58fff63a79486cc6ef8154ce25968f0d33233bbd" - git_remote: "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox" - git_tag: "v0.2.0-17-g58fff63" + git_commit: "6805838a0842a37d17685a5719668d185f6c8649" + git_remote: "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-18-g6805838" package_config: name: "biobox" version: "add_trimgalore" diff --git a/target/executable/bcftools/bcftools_sort/bcftools_sort b/target/executable/bcftools/bcftools_sort/bcftools_sort index 65d7df06..fb8da8ff 100755 --- a/target/executable/bcftools/bcftools_sort/bcftools_sort +++ b/target/executable/bcftools/bcftools_sort/bcftools_sort @@ -483,9 +483,9 @@ RUN echo "bcftools: \"$(bcftools --version | grep 'bcftools' | sed -n 's/^bcftoo LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo" LABEL org.opencontainers.image.description="Companion container for running component bcftools bcftools_sort" -LABEL org.opencontainers.image.created="2024-09-19T09:11:30Z" +LABEL org.opencontainers.image.created="2024-09-19T12:59:39Z" LABEL org.opencontainers.image.source="https://github.com/samtools/bcftools" -LABEL org.opencontainers.image.revision="58fff63a79486cc6ef8154ce25968f0d33233bbd" +LABEL org.opencontainers.image.revision="6805838a0842a37d17685a5719668d185f6c8649" LABEL org.opencontainers.image.version="add_trimgalore" VIASHDOCKER diff --git a/target/executable/bcftools/bcftools_stats/.config.vsh.yaml b/target/executable/bcftools/bcftools_stats/.config.vsh.yaml index a0d88f55..5b0e7a9f 100644 --- a/target/executable/bcftools/bcftools_stats/.config.vsh.yaml +++ b/target/executable/bcftools/bcftools_stats/.config.vsh.yaml @@ -458,9 +458,9 @@ build_info: output: "target/executable/bcftools/bcftools_stats" executable: "target/executable/bcftools/bcftools_stats/bcftools_stats" viash_version: "0.9.0" - git_commit: "58fff63a79486cc6ef8154ce25968f0d33233bbd" - git_remote: "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox" - git_tag: "v0.2.0-17-g58fff63" + git_commit: "6805838a0842a37d17685a5719668d185f6c8649" + git_remote: "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-18-g6805838" package_config: name: "biobox" version: "add_trimgalore" diff --git a/target/executable/bcftools/bcftools_stats/bcftools_stats b/target/executable/bcftools/bcftools_stats/bcftools_stats index a2d985f1..d0b7aea3 100755 --- a/target/executable/bcftools/bcftools_stats/bcftools_stats +++ b/target/executable/bcftools/bcftools_stats/bcftools_stats @@ -626,9 +626,9 @@ RUN echo "bcftools: \"$(bcftools --version | grep 'bcftools' | sed -n 's/^bcftoo LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo" LABEL org.opencontainers.image.description="Companion container for running component bcftools bcftools_stats" -LABEL org.opencontainers.image.created="2024-09-19T09:11:31Z" +LABEL org.opencontainers.image.created="2024-09-19T12:59:40Z" LABEL org.opencontainers.image.source="https://github.com/samtools/bcftools" -LABEL org.opencontainers.image.revision="58fff63a79486cc6ef8154ce25968f0d33233bbd" +LABEL org.opencontainers.image.revision="6805838a0842a37d17685a5719668d185f6c8649" LABEL org.opencontainers.image.version="add_trimgalore" VIASHDOCKER diff --git a/target/executable/bcl_convert/.config.vsh.yaml b/target/executable/bcl_convert/.config.vsh.yaml index 799884c4..de65b054 100644 --- a/target/executable/bcl_convert/.config.vsh.yaml +++ b/target/executable/bcl_convert/.config.vsh.yaml @@ -418,9 +418,9 @@ build_info: output: "target/executable/bcl_convert" executable: "target/executable/bcl_convert/bcl_convert" viash_version: "0.9.0" - git_commit: "58fff63a79486cc6ef8154ce25968f0d33233bbd" - git_remote: "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox" - git_tag: "v0.2.0-17-g58fff63" + git_commit: "6805838a0842a37d17685a5719668d185f6c8649" + git_remote: "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-18-g6805838" package_config: name: "biobox" version: "add_trimgalore" diff --git a/target/executable/bcl_convert/bcl_convert b/target/executable/bcl_convert/bcl_convert index dfcfd884..b709fdc3 100755 --- a/target/executable/bcl_convert/bcl_convert +++ b/target/executable/bcl_convert/bcl_convert @@ -599,9 +599,9 @@ RUN echo "bcl-convert: \"$(bcl-convert -V 2>&1 >/dev/null | sed -n '/Version/ s/ LABEL org.opencontainers.image.authors="Toni Verbeiren, Dorien Roosen" LABEL org.opencontainers.image.description="Companion container for running component bcl_convert" -LABEL org.opencontainers.image.created="2024-09-19T09:11:40Z" +LABEL org.opencontainers.image.created="2024-09-19T12:59:49Z" LABEL org.opencontainers.image.source="https://github.com/viash-hub/biobox" -LABEL org.opencontainers.image.revision="58fff63a79486cc6ef8154ce25968f0d33233bbd" +LABEL org.opencontainers.image.revision="6805838a0842a37d17685a5719668d185f6c8649" LABEL org.opencontainers.image.version="add_trimgalore" VIASHDOCKER diff --git a/target/executable/bd_rhapsody/bd_rhapsody_make_reference/.config.vsh.yaml b/target/executable/bd_rhapsody/bd_rhapsody_make_reference/.config.vsh.yaml index 6fde35f0..8a77cb50 100644 --- a/target/executable/bd_rhapsody/bd_rhapsody_make_reference/.config.vsh.yaml +++ b/target/executable/bd_rhapsody/bd_rhapsody_make_reference/.config.vsh.yaml @@ -274,9 +274,9 @@ build_info: output: "target/executable/bd_rhapsody/bd_rhapsody_make_reference" executable: "target/executable/bd_rhapsody/bd_rhapsody_make_reference/bd_rhapsody_make_reference" viash_version: "0.9.0" - git_commit: "58fff63a79486cc6ef8154ce25968f0d33233bbd" - git_remote: "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox" - git_tag: "v0.2.0-17-g58fff63" + git_commit: "6805838a0842a37d17685a5719668d185f6c8649" + git_remote: "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-18-g6805838" package_config: name: "biobox" version: "add_trimgalore" diff --git a/target/executable/bd_rhapsody/bd_rhapsody_make_reference/bd_rhapsody_make_reference b/target/executable/bd_rhapsody/bd_rhapsody_make_reference/bd_rhapsody_make_reference index 737265db..25aeb55b 100755 --- a/target/executable/bd_rhapsody/bd_rhapsody_make_reference/bd_rhapsody_make_reference +++ b/target/executable/bd_rhapsody/bd_rhapsody_make_reference/bd_rhapsody_make_reference @@ -554,9 +554,9 @@ RUN VERSION=$(ls -v /var/bd_rhapsody_cwl | grep '^v' | sed 's#v##' | tail -1) RUN echo "bdgenomics/rhapsody: \"$VERSION\"" > /var/software_versions.txt LABEL org.opencontainers.image.authors="Robrecht Cannoodt, Weiwei Schultz" LABEL org.opencontainers.image.description="Companion container for running component bd_rhapsody bd_rhapsody_make_reference" -LABEL org.opencontainers.image.created="2024-09-19T09:11:44Z" +LABEL org.opencontainers.image.created="2024-09-19T12:59:53Z" LABEL org.opencontainers.image.source="https://bitbucket.org/CRSwDev/cwl/src/master/v2.2.1/Extra_Utilities/" -LABEL org.opencontainers.image.revision="58fff63a79486cc6ef8154ce25968f0d33233bbd" +LABEL org.opencontainers.image.revision="6805838a0842a37d17685a5719668d185f6c8649" LABEL org.opencontainers.image.version="add_trimgalore" VIASHDOCKER diff --git a/target/executable/bd_rhapsody/bd_rhapsody_sequence_analysis/.config.vsh.yaml b/target/executable/bd_rhapsody/bd_rhapsody_sequence_analysis/.config.vsh.yaml index a8061b14..10eb8f3b 100644 --- a/target/executable/bd_rhapsody/bd_rhapsody_sequence_analysis/.config.vsh.yaml +++ b/target/executable/bd_rhapsody/bd_rhapsody_sequence_analysis/.config.vsh.yaml @@ -1115,9 +1115,9 @@ build_info: output: "target/executable/bd_rhapsody/bd_rhapsody_sequence_analysis" executable: "target/executable/bd_rhapsody/bd_rhapsody_sequence_analysis/bd_rhapsody_sequence_analysis" viash_version: "0.9.0" - git_commit: "58fff63a79486cc6ef8154ce25968f0d33233bbd" - git_remote: "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox" - git_tag: "v0.2.0-17-g58fff63" + git_commit: "6805838a0842a37d17685a5719668d185f6c8649" + git_remote: "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-18-g6805838" package_config: name: "biobox" version: "add_trimgalore" diff --git a/target/executable/bd_rhapsody/bd_rhapsody_sequence_analysis/bd_rhapsody_sequence_analysis b/target/executable/bd_rhapsody/bd_rhapsody_sequence_analysis/bd_rhapsody_sequence_analysis index 57dfbd11..3440f561 100755 --- a/target/executable/bd_rhapsody/bd_rhapsody_sequence_analysis/bd_rhapsody_sequence_analysis +++ b/target/executable/bd_rhapsody/bd_rhapsody_sequence_analysis/bd_rhapsody_sequence_analysis @@ -954,9 +954,9 @@ RUN VERSION=$(ls -v /var/bd_rhapsody_cwl | grep '^v' | sed 's#v##' | tail -1) RUN echo "bdgenomics/rhapsody: \"$VERSION\"" > /var/software_versions.txt LABEL org.opencontainers.image.authors="Robrecht Cannoodt, Weiwei Schultz" LABEL org.opencontainers.image.description="Companion container for running component bd_rhapsody bd_rhapsody_sequence_analysis" -LABEL org.opencontainers.image.created="2024-09-19T09:11:43Z" +LABEL org.opencontainers.image.created="2024-09-19T12:59:53Z" LABEL org.opencontainers.image.source="https://bitbucket.org/CRSwDev/cwl/src/master/v2.2.1" -LABEL org.opencontainers.image.revision="58fff63a79486cc6ef8154ce25968f0d33233bbd" +LABEL org.opencontainers.image.revision="6805838a0842a37d17685a5719668d185f6c8649" LABEL org.opencontainers.image.version="add_trimgalore" VIASHDOCKER diff --git a/target/executable/bedtools/bedtools_bamtofastq/.config.vsh.yaml b/target/executable/bedtools/bedtools_bamtofastq/.config.vsh.yaml index b68131fc..0fbb936d 100644 --- a/target/executable/bedtools/bedtools_bamtofastq/.config.vsh.yaml +++ b/target/executable/bedtools/bedtools_bamtofastq/.config.vsh.yaml @@ -187,9 +187,9 @@ build_info: output: "target/executable/bedtools/bedtools_bamtofastq" executable: "target/executable/bedtools/bedtools_bamtofastq/bedtools_bamtofastq" viash_version: "0.9.0" - git_commit: "58fff63a79486cc6ef8154ce25968f0d33233bbd" - git_remote: "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox" - git_tag: "v0.2.0-17-g58fff63" + git_commit: "6805838a0842a37d17685a5719668d185f6c8649" + git_remote: "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-18-g6805838" package_config: name: "biobox" version: "add_trimgalore" diff --git a/target/executable/bedtools/bedtools_bamtofastq/bedtools_bamtofastq b/target/executable/bedtools/bedtools_bamtofastq/bedtools_bamtofastq index 8afbe343..5580f3b5 100755 --- a/target/executable/bedtools/bedtools_bamtofastq/bedtools_bamtofastq +++ b/target/executable/bedtools/bedtools_bamtofastq/bedtools_bamtofastq @@ -483,9 +483,9 @@ RUN echo "bedtools: \"$(bedtools --version | sed -n 's/^bedtools //p')\"" > /var LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo" LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_bamtofastq" -LABEL org.opencontainers.image.created="2024-09-19T09:11:23Z" +LABEL org.opencontainers.image.created="2024-09-19T12:59:32Z" LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2" -LABEL org.opencontainers.image.revision="58fff63a79486cc6ef8154ce25968f0d33233bbd" +LABEL org.opencontainers.image.revision="6805838a0842a37d17685a5719668d185f6c8649" LABEL org.opencontainers.image.version="add_trimgalore" VIASHDOCKER diff --git a/target/executable/bedtools/bedtools_bed12tobed6/.config.vsh.yaml b/target/executable/bedtools/bedtools_bed12tobed6/.config.vsh.yaml index 5602eab7..320a0cca 100644 --- a/target/executable/bedtools/bedtools_bed12tobed6/.config.vsh.yaml +++ b/target/executable/bedtools/bedtools_bed12tobed6/.config.vsh.yaml @@ -176,9 +176,9 @@ build_info: output: "target/executable/bedtools/bedtools_bed12tobed6" executable: "target/executable/bedtools/bedtools_bed12tobed6/bedtools_bed12tobed6" viash_version: "0.9.0" - git_commit: "58fff63a79486cc6ef8154ce25968f0d33233bbd" - git_remote: "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox" - git_tag: "v0.2.0-17-g58fff63" + git_commit: "6805838a0842a37d17685a5719668d185f6c8649" + git_remote: "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-18-g6805838" package_config: name: "biobox" version: "add_trimgalore" diff --git a/target/executable/bedtools/bedtools_bed12tobed6/bedtools_bed12tobed6 b/target/executable/bedtools/bedtools_bed12tobed6/bedtools_bed12tobed6 index 1acaee06..40c8349b 100755 --- a/target/executable/bedtools/bedtools_bed12tobed6/bedtools_bed12tobed6 +++ b/target/executable/bedtools/bedtools_bed12tobed6/bedtools_bed12tobed6 @@ -480,9 +480,9 @@ RUN echo "bedtools: \"$(bedtools --version | sed -n 's/^bedtools //p')\"" > /var LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo" LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_bed12tobed6" -LABEL org.opencontainers.image.created="2024-09-19T09:11:22Z" +LABEL org.opencontainers.image.created="2024-09-19T12:59:30Z" LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2" -LABEL org.opencontainers.image.revision="58fff63a79486cc6ef8154ce25968f0d33233bbd" +LABEL org.opencontainers.image.revision="6805838a0842a37d17685a5719668d185f6c8649" LABEL org.opencontainers.image.version="add_trimgalore" VIASHDOCKER diff --git a/target/executable/bedtools/bedtools_bedtobam/.config.vsh.yaml b/target/executable/bedtools/bedtools_bedtobam/.config.vsh.yaml index 61071556..6f5e48d0 100644 --- a/target/executable/bedtools/bedtools_bedtobam/.config.vsh.yaml +++ b/target/executable/bedtools/bedtools_bedtobam/.config.vsh.yaml @@ -214,9 +214,9 @@ build_info: output: "target/executable/bedtools/bedtools_bedtobam" executable: "target/executable/bedtools/bedtools_bedtobam/bedtools_bedtobam" viash_version: "0.9.0" - git_commit: "58fff63a79486cc6ef8154ce25968f0d33233bbd" - git_remote: "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox" - git_tag: "v0.2.0-17-g58fff63" + git_commit: "6805838a0842a37d17685a5719668d185f6c8649" + git_remote: "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-18-g6805838" package_config: name: "biobox" version: "add_trimgalore" diff --git a/target/executable/bedtools/bedtools_bedtobam/bedtools_bedtobam b/target/executable/bedtools/bedtools_bedtobam/bedtools_bedtobam index 7fccfa73..cebbbae8 100755 --- a/target/executable/bedtools/bedtools_bedtobam/bedtools_bedtobam +++ b/target/executable/bedtools/bedtools_bedtobam/bedtools_bedtobam @@ -496,9 +496,9 @@ RUN echo "bedtools: \"$(bedtools --version | sed -n 's/^bedtools //p')\"" > /var LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo" LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_bedtobam" -LABEL org.opencontainers.image.created="2024-09-19T09:11:24Z" +LABEL org.opencontainers.image.created="2024-09-19T12:59:33Z" LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2" -LABEL org.opencontainers.image.revision="58fff63a79486cc6ef8154ce25968f0d33233bbd" +LABEL org.opencontainers.image.revision="6805838a0842a37d17685a5719668d185f6c8649" LABEL org.opencontainers.image.version="add_trimgalore" VIASHDOCKER diff --git a/target/executable/bedtools/bedtools_genomecov/.config.vsh.yaml b/target/executable/bedtools/bedtools_genomecov/.config.vsh.yaml index 9152e677..1d6cd286 100644 --- a/target/executable/bedtools/bedtools_genomecov/.config.vsh.yaml +++ b/target/executable/bedtools/bedtools_genomecov/.config.vsh.yaml @@ -337,9 +337,9 @@ build_info: output: "target/executable/bedtools/bedtools_genomecov" executable: "target/executable/bedtools/bedtools_genomecov/bedtools_genomecov" viash_version: "0.9.0" - git_commit: "58fff63a79486cc6ef8154ce25968f0d33233bbd" - git_remote: "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox" - git_tag: "v0.2.0-17-g58fff63" + git_commit: "6805838a0842a37d17685a5719668d185f6c8649" + git_remote: "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-18-g6805838" package_config: name: "biobox" version: "add_trimgalore" diff --git a/target/executable/bedtools/bedtools_genomecov/bedtools_genomecov b/target/executable/bedtools/bedtools_genomecov/bedtools_genomecov index 2c76d8cf..e63daa9c 100755 --- a/target/executable/bedtools/bedtools_genomecov/bedtools_genomecov +++ b/target/executable/bedtools/bedtools_genomecov/bedtools_genomecov @@ -591,9 +591,9 @@ RUN echo "bedtools: \"$(bedtools --version | sed -n 's/^bedtools //p')\"" > /var LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo" LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_genomecov" -LABEL org.opencontainers.image.created="2024-09-19T09:11:21Z" +LABEL org.opencontainers.image.created="2024-09-19T12:59:30Z" LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2" -LABEL org.opencontainers.image.revision="58fff63a79486cc6ef8154ce25968f0d33233bbd" +LABEL org.opencontainers.image.revision="6805838a0842a37d17685a5719668d185f6c8649" LABEL org.opencontainers.image.version="add_trimgalore" VIASHDOCKER diff --git a/target/executable/bedtools/bedtools_getfasta/.config.vsh.yaml b/target/executable/bedtools/bedtools_getfasta/.config.vsh.yaml index f0e61aad..fb2a3869 100644 --- a/target/executable/bedtools/bedtools_getfasta/.config.vsh.yaml +++ b/target/executable/bedtools/bedtools_getfasta/.config.vsh.yaml @@ -232,9 +232,9 @@ build_info: output: "target/executable/bedtools/bedtools_getfasta" executable: "target/executable/bedtools/bedtools_getfasta/bedtools_getfasta" viash_version: "0.9.0" - git_commit: "58fff63a79486cc6ef8154ce25968f0d33233bbd" - git_remote: "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox" - git_tag: "v0.2.0-17-g58fff63" + git_commit: "6805838a0842a37d17685a5719668d185f6c8649" + git_remote: "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-18-g6805838" package_config: name: "biobox" version: "add_trimgalore" diff --git a/target/executable/bedtools/bedtools_getfasta/bedtools_getfasta b/target/executable/bedtools/bedtools_getfasta/bedtools_getfasta index 55b9b302..91dac2d8 100755 --- a/target/executable/bedtools/bedtools_getfasta/bedtools_getfasta +++ b/target/executable/bedtools/bedtools_getfasta/bedtools_getfasta @@ -526,9 +526,9 @@ RUN echo "bedtools: \"$(bedtools --version | sed -n 's/^bedtools //p')\"" > /var LABEL org.opencontainers.image.authors="Dries Schaumont" LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_getfasta" -LABEL org.opencontainers.image.created="2024-09-19T09:11:22Z" +LABEL org.opencontainers.image.created="2024-09-19T12:59:30Z" LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2" -LABEL org.opencontainers.image.revision="58fff63a79486cc6ef8154ce25968f0d33233bbd" +LABEL org.opencontainers.image.revision="6805838a0842a37d17685a5719668d185f6c8649" LABEL org.opencontainers.image.version="add_trimgalore" VIASHDOCKER diff --git a/target/executable/bedtools/bedtools_groupby/.config.vsh.yaml b/target/executable/bedtools/bedtools_groupby/.config.vsh.yaml index 8443baf1..24187d9f 100644 --- a/target/executable/bedtools/bedtools_groupby/.config.vsh.yaml +++ b/target/executable/bedtools/bedtools_groupby/.config.vsh.yaml @@ -273,9 +273,9 @@ build_info: output: "target/executable/bedtools/bedtools_groupby" executable: "target/executable/bedtools/bedtools_groupby/bedtools_groupby" viash_version: "0.9.0" - git_commit: "58fff63a79486cc6ef8154ce25968f0d33233bbd" - git_remote: "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox" - git_tag: "v0.2.0-17-g58fff63" + git_commit: "6805838a0842a37d17685a5719668d185f6c8649" + git_remote: "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-18-g6805838" package_config: name: "biobox" version: "add_trimgalore" diff --git a/target/executable/bedtools/bedtools_groupby/bedtools_groupby b/target/executable/bedtools/bedtools_groupby/bedtools_groupby index 3dd9d94d..ef10fc48 100755 --- a/target/executable/bedtools/bedtools_groupby/bedtools_groupby +++ b/target/executable/bedtools/bedtools_groupby/bedtools_groupby @@ -552,9 +552,9 @@ RUN echo "bedtools: \"$(bedtools --version | sed -n 's/^bedtools //p')\"" > /var LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo" LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_groupby" -LABEL org.opencontainers.image.created="2024-09-19T09:11:23Z" +LABEL org.opencontainers.image.created="2024-09-19T12:59:32Z" LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2" -LABEL org.opencontainers.image.revision="58fff63a79486cc6ef8154ce25968f0d33233bbd" +LABEL org.opencontainers.image.revision="6805838a0842a37d17685a5719668d185f6c8649" LABEL org.opencontainers.image.version="add_trimgalore" VIASHDOCKER diff --git a/target/executable/bedtools/bedtools_intersect/.config.vsh.yaml b/target/executable/bedtools/bedtools_intersect/.config.vsh.yaml index 56788bf5..d82f3765 100644 --- a/target/executable/bedtools/bedtools_intersect/.config.vsh.yaml +++ b/target/executable/bedtools/bedtools_intersect/.config.vsh.yaml @@ -410,9 +410,9 @@ build_info: output: "target/executable/bedtools/bedtools_intersect" executable: "target/executable/bedtools/bedtools_intersect/bedtools_intersect" viash_version: "0.9.0" - git_commit: "58fff63a79486cc6ef8154ce25968f0d33233bbd" - git_remote: "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox" - git_tag: "v0.2.0-17-g58fff63" + git_commit: "6805838a0842a37d17685a5719668d185f6c8649" + git_remote: "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-18-g6805838" package_config: name: "biobox" version: "add_trimgalore" diff --git a/target/executable/bedtools/bedtools_intersect/bedtools_intersect b/target/executable/bedtools/bedtools_intersect/bedtools_intersect index 8df24102..883a56c9 100755 --- a/target/executable/bedtools/bedtools_intersect/bedtools_intersect +++ b/target/executable/bedtools/bedtools_intersect/bedtools_intersect @@ -633,9 +633,9 @@ RUN echo "bedtools: \"$(bedtools --version | sed -n 's/^bedtools //p')\"" > /var LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo" LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_intersect" -LABEL org.opencontainers.image.created="2024-09-19T09:11:22Z" +LABEL org.opencontainers.image.created="2024-09-19T12:59:31Z" LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2" -LABEL org.opencontainers.image.revision="58fff63a79486cc6ef8154ce25968f0d33233bbd" +LABEL org.opencontainers.image.revision="6805838a0842a37d17685a5719668d185f6c8649" LABEL org.opencontainers.image.version="add_trimgalore" VIASHDOCKER diff --git a/target/executable/bedtools/bedtools_links/.config.vsh.yaml b/target/executable/bedtools/bedtools_links/.config.vsh.yaml index b373022b..d341a50e 100644 --- a/target/executable/bedtools/bedtools_links/.config.vsh.yaml +++ b/target/executable/bedtools/bedtools_links/.config.vsh.yaml @@ -210,9 +210,9 @@ build_info: output: "target/executable/bedtools/bedtools_links" executable: "target/executable/bedtools/bedtools_links/bedtools_links" viash_version: "0.9.0" - git_commit: "58fff63a79486cc6ef8154ce25968f0d33233bbd" - git_remote: "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox" - git_tag: "v0.2.0-17-g58fff63" + git_commit: "6805838a0842a37d17685a5719668d185f6c8649" + git_remote: "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-18-g6805838" package_config: name: "biobox" version: "add_trimgalore" diff --git a/target/executable/bedtools/bedtools_links/bedtools_links b/target/executable/bedtools/bedtools_links/bedtools_links index 2d92788d..ffbea368 100755 --- a/target/executable/bedtools/bedtools_links/bedtools_links +++ b/target/executable/bedtools/bedtools_links/bedtools_links @@ -500,9 +500,9 @@ RUN echo "bedtools: \"$(bedtools --version | sed -n 's/^bedtools //p')\"" > /var LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo" LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_links" -LABEL org.opencontainers.image.created="2024-09-19T09:11:23Z" +LABEL org.opencontainers.image.created="2024-09-19T12:59:31Z" LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2" -LABEL org.opencontainers.image.revision="58fff63a79486cc6ef8154ce25968f0d33233bbd" +LABEL org.opencontainers.image.revision="6805838a0842a37d17685a5719668d185f6c8649" LABEL org.opencontainers.image.version="add_trimgalore" VIASHDOCKER diff --git a/target/executable/bedtools/bedtools_merge/.config.vsh.yaml b/target/executable/bedtools/bedtools_merge/.config.vsh.yaml index b541b6a5..ca70adc6 100644 --- a/target/executable/bedtools/bedtools_merge/.config.vsh.yaml +++ b/target/executable/bedtools/bedtools_merge/.config.vsh.yaml @@ -279,9 +279,9 @@ build_info: output: "target/executable/bedtools/bedtools_merge" executable: "target/executable/bedtools/bedtools_merge/bedtools_merge" viash_version: "0.9.0" - git_commit: "58fff63a79486cc6ef8154ce25968f0d33233bbd" - git_remote: "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox" - git_tag: "v0.2.0-17-g58fff63" + git_commit: "6805838a0842a37d17685a5719668d185f6c8649" + git_remote: "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-18-g6805838" package_config: name: "biobox" version: "add_trimgalore" diff --git a/target/executable/bedtools/bedtools_merge/bedtools_merge b/target/executable/bedtools/bedtools_merge/bedtools_merge index 4317e1ee..8ede33ac 100755 --- a/target/executable/bedtools/bedtools_merge/bedtools_merge +++ b/target/executable/bedtools/bedtools_merge/bedtools_merge @@ -558,9 +558,9 @@ RUN echo "bedtools: \"$(bedtools --version | sed -n 's/^bedtools //p')\"" > /var LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo" LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_merge" -LABEL org.opencontainers.image.created="2024-09-19T09:11:21Z" +LABEL org.opencontainers.image.created="2024-09-19T12:59:29Z" LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2" -LABEL org.opencontainers.image.revision="58fff63a79486cc6ef8154ce25968f0d33233bbd" +LABEL org.opencontainers.image.revision="6805838a0842a37d17685a5719668d185f6c8649" LABEL org.opencontainers.image.version="add_trimgalore" VIASHDOCKER diff --git a/target/executable/bedtools/bedtools_sort/.config.vsh.yaml b/target/executable/bedtools/bedtools_sort/.config.vsh.yaml index 73409b4c..9eaf7a90 100644 --- a/target/executable/bedtools/bedtools_sort/.config.vsh.yaml +++ b/target/executable/bedtools/bedtools_sort/.config.vsh.yaml @@ -222,9 +222,9 @@ build_info: output: "target/executable/bedtools/bedtools_sort" executable: "target/executable/bedtools/bedtools_sort/bedtools_sort" viash_version: "0.9.0" - git_commit: "58fff63a79486cc6ef8154ce25968f0d33233bbd" - git_remote: "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox" - git_tag: "v0.2.0-17-g58fff63" + git_commit: "6805838a0842a37d17685a5719668d185f6c8649" + git_remote: "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-18-g6805838" package_config: name: "biobox" version: "add_trimgalore" diff --git a/target/executable/bedtools/bedtools_sort/bedtools_sort b/target/executable/bedtools/bedtools_sort/bedtools_sort index 834edcf4..3d6bcd46 100755 --- a/target/executable/bedtools/bedtools_sort/bedtools_sort +++ b/target/executable/bedtools/bedtools_sort/bedtools_sort @@ -509,9 +509,9 @@ RUN echo "bedtools: \"$(bedtools --version | sed -n 's/^bedtools //p')\"" > /var LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo" LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_sort" -LABEL org.opencontainers.image.created="2024-09-19T09:11:24Z" +LABEL org.opencontainers.image.created="2024-09-19T12:59:32Z" LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2" -LABEL org.opencontainers.image.revision="58fff63a79486cc6ef8154ce25968f0d33233bbd" +LABEL org.opencontainers.image.revision="6805838a0842a37d17685a5719668d185f6c8649" LABEL org.opencontainers.image.version="add_trimgalore" VIASHDOCKER diff --git a/target/executable/busco/busco_download_datasets/.config.vsh.yaml b/target/executable/busco/busco_download_datasets/.config.vsh.yaml index ccb7a3a0..38738503 100644 --- a/target/executable/busco/busco_download_datasets/.config.vsh.yaml +++ b/target/executable/busco/busco_download_datasets/.config.vsh.yaml @@ -158,9 +158,9 @@ build_info: output: "target/executable/busco/busco_download_datasets" executable: "target/executable/busco/busco_download_datasets/busco_download_datasets" viash_version: "0.9.0" - git_commit: "58fff63a79486cc6ef8154ce25968f0d33233bbd" - git_remote: "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox" - git_tag: "v0.2.0-17-g58fff63" + git_commit: "6805838a0842a37d17685a5719668d185f6c8649" + git_remote: "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-18-g6805838" package_config: name: "biobox" version: "add_trimgalore" diff --git a/target/executable/busco/busco_download_datasets/busco_download_datasets b/target/executable/busco/busco_download_datasets/busco_download_datasets index 371aeeed..3a344bc1 100755 --- a/target/executable/busco/busco_download_datasets/busco_download_datasets +++ b/target/executable/busco/busco_download_datasets/busco_download_datasets @@ -475,9 +475,9 @@ RUN busco --version | sed 's/BUSCO\s\(.*\)/busco: "\1"/' > /var/software_version LABEL org.opencontainers.image.authors="Dorien Roosen" LABEL org.opencontainers.image.description="Companion container for running component busco busco_download_datasets" -LABEL org.opencontainers.image.created="2024-09-19T09:11:34Z" +LABEL org.opencontainers.image.created="2024-09-19T12:59:44Z" LABEL org.opencontainers.image.source="https://gitlab.com/ezlab/busco" -LABEL org.opencontainers.image.revision="58fff63a79486cc6ef8154ce25968f0d33233bbd" +LABEL org.opencontainers.image.revision="6805838a0842a37d17685a5719668d185f6c8649" LABEL org.opencontainers.image.version="add_trimgalore" VIASHDOCKER diff --git a/target/executable/busco/busco_list_datasets/.config.vsh.yaml b/target/executable/busco/busco_list_datasets/.config.vsh.yaml index 35965fe1..924af211 100644 --- a/target/executable/busco/busco_list_datasets/.config.vsh.yaml +++ b/target/executable/busco/busco_list_datasets/.config.vsh.yaml @@ -145,9 +145,9 @@ build_info: output: "target/executable/busco/busco_list_datasets" executable: "target/executable/busco/busco_list_datasets/busco_list_datasets" viash_version: "0.9.0" - git_commit: "58fff63a79486cc6ef8154ce25968f0d33233bbd" - git_remote: "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox" - git_tag: "v0.2.0-17-g58fff63" + git_commit: "6805838a0842a37d17685a5719668d185f6c8649" + git_remote: "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-18-g6805838" package_config: name: "biobox" version: "add_trimgalore" diff --git a/target/executable/busco/busco_list_datasets/busco_list_datasets b/target/executable/busco/busco_list_datasets/busco_list_datasets index 918bbc49..c317276d 100755 --- a/target/executable/busco/busco_list_datasets/busco_list_datasets +++ b/target/executable/busco/busco_list_datasets/busco_list_datasets @@ -465,9 +465,9 @@ RUN busco --version | sed 's/BUSCO\s\(.*\)/busco: "\1"/' > /var/software_version LABEL org.opencontainers.image.authors="Dorien Roosen" LABEL org.opencontainers.image.description="Companion container for running component busco busco_list_datasets" -LABEL org.opencontainers.image.created="2024-09-19T09:11:35Z" +LABEL org.opencontainers.image.created="2024-09-19T12:59:44Z" LABEL org.opencontainers.image.source="https://gitlab.com/ezlab/busco" -LABEL org.opencontainers.image.revision="58fff63a79486cc6ef8154ce25968f0d33233bbd" +LABEL org.opencontainers.image.revision="6805838a0842a37d17685a5719668d185f6c8649" LABEL org.opencontainers.image.version="add_trimgalore" VIASHDOCKER diff --git a/target/executable/busco/busco_run/.config.vsh.yaml b/target/executable/busco/busco_run/.config.vsh.yaml index 43a64cc9..097a85e7 100644 --- a/target/executable/busco/busco_run/.config.vsh.yaml +++ b/target/executable/busco/busco_run/.config.vsh.yaml @@ -423,9 +423,9 @@ build_info: output: "target/executable/busco/busco_run" executable: "target/executable/busco/busco_run/busco_run" viash_version: "0.9.0" - git_commit: "58fff63a79486cc6ef8154ce25968f0d33233bbd" - git_remote: "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox" - git_tag: "v0.2.0-17-g58fff63" + git_commit: "6805838a0842a37d17685a5719668d185f6c8649" + git_remote: "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-18-g6805838" package_config: name: "biobox" version: "add_trimgalore" diff --git a/target/executable/busco/busco_run/busco_run b/target/executable/busco/busco_run/busco_run index 82e97c9f..45770dea 100755 --- a/target/executable/busco/busco_run/busco_run +++ b/target/executable/busco/busco_run/busco_run @@ -632,9 +632,9 @@ RUN busco --version | sed 's/BUSCO\s\(.*\)/busco: "\1"/' > /var/software_version LABEL org.opencontainers.image.authors="Dorien Roosen" LABEL org.opencontainers.image.description="Companion container for running component busco busco_run" -LABEL org.opencontainers.image.created="2024-09-19T09:11:35Z" +LABEL org.opencontainers.image.created="2024-09-19T12:59:44Z" LABEL org.opencontainers.image.source="https://gitlab.com/ezlab/busco" -LABEL org.opencontainers.image.revision="58fff63a79486cc6ef8154ce25968f0d33233bbd" +LABEL org.opencontainers.image.revision="6805838a0842a37d17685a5719668d185f6c8649" LABEL org.opencontainers.image.version="add_trimgalore" VIASHDOCKER diff --git a/target/executable/cutadapt/.config.vsh.yaml b/target/executable/cutadapt/.config.vsh.yaml index e3e900da..21bc0e6d 100644 --- a/target/executable/cutadapt/.config.vsh.yaml +++ b/target/executable/cutadapt/.config.vsh.yaml @@ -740,9 +740,9 @@ build_info: output: "target/executable/cutadapt" executable: "target/executable/cutadapt/cutadapt" viash_version: "0.9.0" - git_commit: "58fff63a79486cc6ef8154ce25968f0d33233bbd" - git_remote: "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox" - git_tag: "v0.2.0-17-g58fff63" + git_commit: "6805838a0842a37d17685a5719668d185f6c8649" + git_remote: "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-18-g6805838" package_config: name: "biobox" version: "add_trimgalore" diff --git a/target/executable/cutadapt/cutadapt b/target/executable/cutadapt/cutadapt index 6710d3af..3f53aaf7 100755 --- a/target/executable/cutadapt/cutadapt +++ b/target/executable/cutadapt/cutadapt @@ -831,9 +831,9 @@ RUN cutadapt --version | sed 's/\(.*\)/cutadapt: "\1"/' > /var/software_versions LABEL org.opencontainers.image.authors="Toni Verbeiren" LABEL org.opencontainers.image.description="Companion container for running component cutadapt" -LABEL org.opencontainers.image.created="2024-09-19T09:11:42Z" +LABEL org.opencontainers.image.created="2024-09-19T12:59:51Z" LABEL org.opencontainers.image.source="https://github.com/marcelm/cutadapt" -LABEL org.opencontainers.image.revision="58fff63a79486cc6ef8154ce25968f0d33233bbd" +LABEL org.opencontainers.image.revision="6805838a0842a37d17685a5719668d185f6c8649" LABEL org.opencontainers.image.version="add_trimgalore" VIASHDOCKER diff --git a/target/executable/falco/.config.vsh.yaml b/target/executable/falco/.config.vsh.yaml index f996fb38..1a51d9bc 100644 --- a/target/executable/falco/.config.vsh.yaml +++ b/target/executable/falco/.config.vsh.yaml @@ -317,9 +317,9 @@ build_info: output: "target/executable/falco" executable: "target/executable/falco/falco" viash_version: "0.9.0" - git_commit: "58fff63a79486cc6ef8154ce25968f0d33233bbd" - git_remote: "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox" - git_tag: "v0.2.0-17-g58fff63" + git_commit: "6805838a0842a37d17685a5719668d185f6c8649" + git_remote: "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-18-g6805838" package_config: name: "biobox" version: "add_trimgalore" diff --git a/target/executable/falco/falco b/target/executable/falco/falco index b21862fb..685b690e 100755 --- a/target/executable/falco/falco +++ b/target/executable/falco/falco @@ -589,9 +589,9 @@ RUN echo "falco: \"$(falco -v | sed -n 's/^falco //p')\"" > /var/software_versio LABEL org.opencontainers.image.authors="Toni Verbeiren" LABEL org.opencontainers.image.description="Companion container for running component falco" -LABEL org.opencontainers.image.created="2024-09-19T09:11:43Z" +LABEL org.opencontainers.image.created="2024-09-19T12:59:52Z" LABEL org.opencontainers.image.source="https://github.com/smithlabcode/falco" -LABEL org.opencontainers.image.revision="58fff63a79486cc6ef8154ce25968f0d33233bbd" +LABEL org.opencontainers.image.revision="6805838a0842a37d17685a5719668d185f6c8649" LABEL org.opencontainers.image.version="add_trimgalore" VIASHDOCKER diff --git a/target/executable/fastp/.config.vsh.yaml b/target/executable/fastp/.config.vsh.yaml index e5019667..c918f863 100644 --- a/target/executable/fastp/.config.vsh.yaml +++ b/target/executable/fastp/.config.vsh.yaml @@ -1083,9 +1083,9 @@ build_info: output: "target/executable/fastp" executable: "target/executable/fastp/fastp" viash_version: "0.9.0" - git_commit: "58fff63a79486cc6ef8154ce25968f0d33233bbd" - git_remote: "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox" - git_tag: "v0.2.0-17-g58fff63" + git_commit: "6805838a0842a37d17685a5719668d185f6c8649" + git_remote: "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-18-g6805838" package_config: name: "biobox" version: "add_trimgalore" diff --git a/target/executable/fastp/fastp b/target/executable/fastp/fastp index 4da5bcf1..f92fd73b 100755 --- a/target/executable/fastp/fastp +++ b/target/executable/fastp/fastp @@ -1028,9 +1028,9 @@ RUN fastp --version 2>&1 | sed 's# #: "#;s#$#"#' > /var/software_versions.txt LABEL org.opencontainers.image.authors="Robrecht Cannoodt" LABEL org.opencontainers.image.description="Companion container for running component fastp" -LABEL org.opencontainers.image.created="2024-09-19T09:11:39Z" +LABEL org.opencontainers.image.created="2024-09-19T12:59:49Z" LABEL org.opencontainers.image.source="https://github.com/OpenGene/fastp" -LABEL org.opencontainers.image.revision="58fff63a79486cc6ef8154ce25968f0d33233bbd" +LABEL org.opencontainers.image.revision="6805838a0842a37d17685a5719668d185f6c8649" LABEL org.opencontainers.image.version="add_trimgalore" VIASHDOCKER diff --git a/target/executable/fastqc/.config.vsh.yaml b/target/executable/fastqc/.config.vsh.yaml index a12183f0..710dddd4 100644 --- a/target/executable/fastqc/.config.vsh.yaml +++ b/target/executable/fastqc/.config.vsh.yaml @@ -340,9 +340,9 @@ build_info: output: "target/executable/fastqc" executable: "target/executable/fastqc/fastqc" viash_version: "0.9.0" - git_commit: "58fff63a79486cc6ef8154ce25968f0d33233bbd" - git_remote: "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox" - git_tag: "v0.2.0-17-g58fff63" + git_commit: "6805838a0842a37d17685a5719668d185f6c8649" + git_remote: "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-18-g6805838" package_config: name: "biobox" version: "add_trimgalore" diff --git a/target/executable/fastqc/fastqc b/target/executable/fastqc/fastqc index 03d96363..3c1c3e83 100755 --- a/target/executable/fastqc/fastqc +++ b/target/executable/fastqc/fastqc @@ -601,9 +601,9 @@ RUN echo "fastqc: $(fastqc --version | sed -n 's/^FastQC //p')" > /var/software_ LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo" LABEL org.opencontainers.image.description="Companion container for running component fastqc" -LABEL org.opencontainers.image.created="2024-09-19T09:11:29Z" +LABEL org.opencontainers.image.created="2024-09-19T12:59:38Z" LABEL org.opencontainers.image.source="https://github.com/s-andrews/FastQC" -LABEL org.opencontainers.image.revision="58fff63a79486cc6ef8154ce25968f0d33233bbd" +LABEL org.opencontainers.image.revision="6805838a0842a37d17685a5719668d185f6c8649" LABEL org.opencontainers.image.version="add_trimgalore" VIASHDOCKER diff --git a/target/executable/featurecounts/.config.vsh.yaml b/target/executable/featurecounts/.config.vsh.yaml index 50a192df..4c3db838 100644 --- a/target/executable/featurecounts/.config.vsh.yaml +++ b/target/executable/featurecounts/.config.vsh.yaml @@ -645,9 +645,9 @@ build_info: output: "target/executable/featurecounts" executable: "target/executable/featurecounts/featurecounts" viash_version: "0.9.0" - git_commit: "58fff63a79486cc6ef8154ce25968f0d33233bbd" - git_remote: "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox" - git_tag: "v0.2.0-17-g58fff63" + git_commit: "6805838a0842a37d17685a5719668d185f6c8649" + git_remote: "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-18-g6805838" package_config: name: "biobox" version: "add_trimgalore" diff --git a/target/executable/featurecounts/featurecounts b/target/executable/featurecounts/featurecounts index e3db0a87..063ad521 100755 --- a/target/executable/featurecounts/featurecounts +++ b/target/executable/featurecounts/featurecounts @@ -754,9 +754,9 @@ RUN featureCounts -v 2>&1 | sed 's/featureCounts v\([0-9.]*\)/featureCounts: \1/ LABEL org.opencontainers.image.authors="Sai Nirmayi Yasa" LABEL org.opencontainers.image.description="Companion container for running component featurecounts" -LABEL org.opencontainers.image.created="2024-09-19T09:11:33Z" +LABEL org.opencontainers.image.created="2024-09-19T12:59:42Z" LABEL org.opencontainers.image.source="https://github.com/ShiLab-Bioinformatics/subread" -LABEL org.opencontainers.image.revision="58fff63a79486cc6ef8154ce25968f0d33233bbd" +LABEL org.opencontainers.image.revision="6805838a0842a37d17685a5719668d185f6c8649" LABEL org.opencontainers.image.version="add_trimgalore" VIASHDOCKER diff --git a/target/executable/fq_subsample/.config.vsh.yaml b/target/executable/fq_subsample/.config.vsh.yaml index 0713e889..4da07ff3 100644 --- a/target/executable/fq_subsample/.config.vsh.yaml +++ b/target/executable/fq_subsample/.config.vsh.yaml @@ -190,9 +190,9 @@ build_info: output: "target/executable/fq_subsample" executable: "target/executable/fq_subsample/fq_subsample" viash_version: "0.9.0" - git_commit: "58fff63a79486cc6ef8154ce25968f0d33233bbd" - git_remote: "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox" - git_tag: "v0.2.0-17-g58fff63" + git_commit: "6805838a0842a37d17685a5719668d185f6c8649" + git_remote: "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-18-g6805838" package_config: name: "biobox" version: "add_trimgalore" diff --git a/target/executable/fq_subsample/fq_subsample b/target/executable/fq_subsample/fq_subsample index 5ab6d930..73c24b86 100755 --- a/target/executable/fq_subsample/fq_subsample +++ b/target/executable/fq_subsample/fq_subsample @@ -493,9 +493,9 @@ mv target/release/fq /usr/local/bin/ && \ cd / && rm -rf /fq LABEL org.opencontainers.image.description="Companion container for running component fq_subsample" -LABEL org.opencontainers.image.created="2024-09-19T09:11:28Z" +LABEL org.opencontainers.image.created="2024-09-19T12:59:37Z" LABEL org.opencontainers.image.source="https://github.com/stjude-rust-labs/fq" -LABEL org.opencontainers.image.revision="58fff63a79486cc6ef8154ce25968f0d33233bbd" +LABEL org.opencontainers.image.revision="6805838a0842a37d17685a5719668d185f6c8649" LABEL org.opencontainers.image.version="add_trimgalore" VIASHDOCKER diff --git a/target/executable/gffread/.config.vsh.yaml b/target/executable/gffread/.config.vsh.yaml index 2039d6f3..b4c57849 100644 --- a/target/executable/gffread/.config.vsh.yaml +++ b/target/executable/gffread/.config.vsh.yaml @@ -685,9 +685,9 @@ build_info: output: "target/executable/gffread" executable: "target/executable/gffread/gffread" viash_version: "0.9.0" - git_commit: "58fff63a79486cc6ef8154ce25968f0d33233bbd" - git_remote: "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox" - git_tag: "v0.2.0-17-g58fff63" + git_commit: "6805838a0842a37d17685a5719668d185f6c8649" + git_remote: "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-18-g6805838" package_config: name: "biobox" version: "add_trimgalore" diff --git a/target/executable/gffread/gffread b/target/executable/gffread/gffread index 81ce0a13..4fb7be96 100755 --- a/target/executable/gffread/gffread +++ b/target/executable/gffread/gffread @@ -807,9 +807,9 @@ RUN echo "gffread: \"$(gffread --version 2>&1)\"" > /var/software_versions.txt LABEL org.opencontainers.image.authors="Emma Rousseau" LABEL org.opencontainers.image.description="Companion container for running component gffread" -LABEL org.opencontainers.image.created="2024-09-19T09:11:20Z" +LABEL org.opencontainers.image.created="2024-09-19T12:59:29Z" LABEL org.opencontainers.image.source="https://github.com/gpertea/gffread" -LABEL org.opencontainers.image.revision="58fff63a79486cc6ef8154ce25968f0d33233bbd" +LABEL org.opencontainers.image.revision="6805838a0842a37d17685a5719668d185f6c8649" LABEL org.opencontainers.image.version="add_trimgalore" VIASHDOCKER diff --git a/target/executable/kallisto/kallisto_index/.config.vsh.yaml b/target/executable/kallisto/kallisto_index/.config.vsh.yaml index 70c7f0c8..e13c7d14 100644 --- a/target/executable/kallisto/kallisto_index/.config.vsh.yaml +++ b/target/executable/kallisto/kallisto_index/.config.vsh.yaml @@ -218,9 +218,9 @@ build_info: output: "target/executable/kallisto/kallisto_index" executable: "target/executable/kallisto/kallisto_index/kallisto_index" viash_version: "0.9.0" - git_commit: "58fff63a79486cc6ef8154ce25968f0d33233bbd" - git_remote: "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox" - git_tag: "v0.2.0-17-g58fff63" + git_commit: "6805838a0842a37d17685a5719668d185f6c8649" + git_remote: "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-18-g6805838" package_config: name: "biobox" version: "add_trimgalore" diff --git a/target/executable/kallisto/kallisto_index/kallisto_index b/target/executable/kallisto/kallisto_index/kallisto_index index 699c3a79..3a5f5e32 100755 --- a/target/executable/kallisto/kallisto_index/kallisto_index +++ b/target/executable/kallisto/kallisto_index/kallisto_index @@ -506,9 +506,9 @@ tar -xzf kallisto_linux-v0.50.1.tar.gz && \ mv kallisto/kallisto /usr/local/bin/ LABEL org.opencontainers.image.description="Companion container for running component kallisto kallisto_index" -LABEL org.opencontainers.image.created="2024-09-19T09:11:37Z" +LABEL org.opencontainers.image.created="2024-09-19T12:59:46Z" LABEL org.opencontainers.image.source="https://github.com/pachterlab/kallisto" -LABEL org.opencontainers.image.revision="58fff63a79486cc6ef8154ce25968f0d33233bbd" +LABEL org.opencontainers.image.revision="6805838a0842a37d17685a5719668d185f6c8649" LABEL org.opencontainers.image.version="add_trimgalore" VIASHDOCKER diff --git a/target/executable/kallisto/kallisto_quant/.config.vsh.yaml b/target/executable/kallisto/kallisto_quant/.config.vsh.yaml index 0d551ec1..0340a7e3 100644 --- a/target/executable/kallisto/kallisto_quant/.config.vsh.yaml +++ b/target/executable/kallisto/kallisto_quant/.config.vsh.yaml @@ -234,9 +234,9 @@ build_info: output: "target/executable/kallisto/kallisto_quant" executable: "target/executable/kallisto/kallisto_quant/kallisto_quant" viash_version: "0.9.0" - git_commit: "58fff63a79486cc6ef8154ce25968f0d33233bbd" - git_remote: "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox" - git_tag: "v0.2.0-17-g58fff63" + git_commit: "6805838a0842a37d17685a5719668d185f6c8649" + git_remote: "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-18-g6805838" package_config: name: "biobox" version: "add_trimgalore" diff --git a/target/executable/kallisto/kallisto_quant/kallisto_quant b/target/executable/kallisto/kallisto_quant/kallisto_quant index b75ce85a..0c11b9a1 100755 --- a/target/executable/kallisto/kallisto_quant/kallisto_quant +++ b/target/executable/kallisto/kallisto_quant/kallisto_quant @@ -518,9 +518,9 @@ mv kallisto/kallisto /usr/local/bin/ RUN echo "kallisto: $(kallisto version | sed 's/kallisto, version //')" > /var/software_versions.txt LABEL org.opencontainers.image.description="Companion container for running component kallisto kallisto_quant" -LABEL org.opencontainers.image.created="2024-09-19T09:11:36Z" +LABEL org.opencontainers.image.created="2024-09-19T12:59:46Z" LABEL org.opencontainers.image.source="https://github.com/pachterlab/kallisto" -LABEL org.opencontainers.image.revision="58fff63a79486cc6ef8154ce25968f0d33233bbd" +LABEL org.opencontainers.image.revision="6805838a0842a37d17685a5719668d185f6c8649" LABEL org.opencontainers.image.version="add_trimgalore" VIASHDOCKER diff --git a/target/executable/lofreq/lofreq_call/.config.vsh.yaml b/target/executable/lofreq/lofreq_call/.config.vsh.yaml index d59be606..5cc171f3 100644 --- a/target/executable/lofreq/lofreq_call/.config.vsh.yaml +++ b/target/executable/lofreq/lofreq_call/.config.vsh.yaml @@ -507,9 +507,9 @@ build_info: output: "target/executable/lofreq/lofreq_call" executable: "target/executable/lofreq/lofreq_call/lofreq_call" viash_version: "0.9.0" - git_commit: "58fff63a79486cc6ef8154ce25968f0d33233bbd" - git_remote: "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox" - git_tag: "v0.2.0-17-g58fff63" + git_commit: "6805838a0842a37d17685a5719668d185f6c8649" + git_remote: "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-18-g6805838" package_config: name: "biobox" version: "add_trimgalore" diff --git a/target/executable/lofreq/lofreq_call/lofreq_call b/target/executable/lofreq/lofreq_call/lofreq_call index 6daccce3..f3d168cf 100755 --- a/target/executable/lofreq/lofreq_call/lofreq_call +++ b/target/executable/lofreq/lofreq_call/lofreq_call @@ -656,9 +656,9 @@ echo "lofreq: $version" > /var/software_versions.txt LABEL org.opencontainers.image.authors="Kai Waldrant" LABEL org.opencontainers.image.description="Companion container for running component lofreq lofreq_call" -LABEL org.opencontainers.image.created="2024-09-19T09:11:32Z" +LABEL org.opencontainers.image.created="2024-09-19T12:59:41Z" LABEL org.opencontainers.image.source="https://github.com/viash-hub/biobox" -LABEL org.opencontainers.image.revision="58fff63a79486cc6ef8154ce25968f0d33233bbd" +LABEL org.opencontainers.image.revision="6805838a0842a37d17685a5719668d185f6c8649" LABEL org.opencontainers.image.version="add_trimgalore" VIASHDOCKER diff --git a/target/executable/lofreq/lofreq_indelqual/.config.vsh.yaml b/target/executable/lofreq/lofreq_indelqual/.config.vsh.yaml index 9cf81826..6630c0ee 100644 --- a/target/executable/lofreq/lofreq_indelqual/.config.vsh.yaml +++ b/target/executable/lofreq/lofreq_indelqual/.config.vsh.yaml @@ -215,9 +215,9 @@ build_info: output: "target/executable/lofreq/lofreq_indelqual" executable: "target/executable/lofreq/lofreq_indelqual/lofreq_indelqual" viash_version: "0.9.0" - git_commit: "58fff63a79486cc6ef8154ce25968f0d33233bbd" - git_remote: "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox" - git_tag: "v0.2.0-17-g58fff63" + git_commit: "6805838a0842a37d17685a5719668d185f6c8649" + git_remote: "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-18-g6805838" package_config: name: "biobox" version: "add_trimgalore" diff --git a/target/executable/lofreq/lofreq_indelqual/lofreq_indelqual b/target/executable/lofreq/lofreq_indelqual/lofreq_indelqual index 9c7bb9b6..5a268fdf 100755 --- a/target/executable/lofreq/lofreq_indelqual/lofreq_indelqual +++ b/target/executable/lofreq/lofreq_indelqual/lofreq_indelqual @@ -501,9 +501,9 @@ echo "lofreq: $version" > /var/software_versions.txt LABEL org.opencontainers.image.authors="Kai Waldrant" LABEL org.opencontainers.image.description="Companion container for running component lofreq lofreq_indelqual" -LABEL org.opencontainers.image.created="2024-09-19T09:11:32Z" +LABEL org.opencontainers.image.created="2024-09-19T12:59:41Z" LABEL org.opencontainers.image.source="https://github.com/viash-hub/biobox" -LABEL org.opencontainers.image.revision="58fff63a79486cc6ef8154ce25968f0d33233bbd" +LABEL org.opencontainers.image.revision="6805838a0842a37d17685a5719668d185f6c8649" LABEL org.opencontainers.image.version="add_trimgalore" VIASHDOCKER diff --git a/target/executable/multiqc/.config.vsh.yaml b/target/executable/multiqc/.config.vsh.yaml index 3c506228..93732ffe 100644 --- a/target/executable/multiqc/.config.vsh.yaml +++ b/target/executable/multiqc/.config.vsh.yaml @@ -456,9 +456,9 @@ build_info: output: "target/executable/multiqc" executable: "target/executable/multiqc/multiqc" viash_version: "0.9.0" - git_commit: "58fff63a79486cc6ef8154ce25968f0d33233bbd" - git_remote: "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox" - git_tag: "v0.2.0-17-g58fff63" + git_commit: "6805838a0842a37d17685a5719668d185f6c8649" + git_remote: "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-18-g6805838" package_config: name: "biobox" version: "add_trimgalore" diff --git a/target/executable/multiqc/multiqc b/target/executable/multiqc/multiqc index 5b7292fe..59c171b7 100755 --- a/target/executable/multiqc/multiqc +++ b/target/executable/multiqc/multiqc @@ -637,9 +637,9 @@ RUN multiqc --version | sed 's/multiqc, version\s\(.*\)/multiqc: "\1"/' > /var/s LABEL org.opencontainers.image.authors="Dorien Roosen" LABEL org.opencontainers.image.description="Companion container for running component multiqc" -LABEL org.opencontainers.image.created="2024-09-19T09:11:42Z" +LABEL org.opencontainers.image.created="2024-09-19T12:59:52Z" LABEL org.opencontainers.image.source="https://github.com/viash-hub/biobox" -LABEL org.opencontainers.image.revision="58fff63a79486cc6ef8154ce25968f0d33233bbd" +LABEL org.opencontainers.image.revision="6805838a0842a37d17685a5719668d185f6c8649" LABEL org.opencontainers.image.version="add_trimgalore" VIASHDOCKER diff --git a/target/executable/pear/.config.vsh.yaml b/target/executable/pear/.config.vsh.yaml index 4ca1ffc7..8c47d4b6 100644 --- a/target/executable/pear/.config.vsh.yaml +++ b/target/executable/pear/.config.vsh.yaml @@ -398,9 +398,9 @@ build_info: output: "target/executable/pear" executable: "target/executable/pear/pear" viash_version: "0.9.0" - git_commit: "58fff63a79486cc6ef8154ce25968f0d33233bbd" - git_remote: "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox" - git_tag: "v0.2.0-17-g58fff63" + git_commit: "6805838a0842a37d17685a5719668d185f6c8649" + git_remote: "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-18-g6805838" package_config: name: "biobox" version: "add_trimgalore" diff --git a/target/executable/pear/pear b/target/executable/pear/pear index aae71aa3..9e738945 100755 --- a/target/executable/pear/pear +++ b/target/executable/pear/pear @@ -597,9 +597,9 @@ echo "pear: $version" > /var/software_versions.txt LABEL org.opencontainers.image.authors="Kai Waldrant" LABEL org.opencontainers.image.description="Companion container for running component pear" -LABEL org.opencontainers.image.created="2024-09-19T09:11:24Z" +LABEL org.opencontainers.image.created="2024-09-19T12:59:33Z" LABEL org.opencontainers.image.source="https://github.com/tseemann/PEAR" -LABEL org.opencontainers.image.revision="58fff63a79486cc6ef8154ce25968f0d33233bbd" +LABEL org.opencontainers.image.revision="6805838a0842a37d17685a5719668d185f6c8649" LABEL org.opencontainers.image.version="add_trimgalore" VIASHDOCKER diff --git a/target/executable/qualimap/qualimap_rnaseq/.config.vsh.yaml b/target/executable/qualimap/qualimap_rnaseq/.config.vsh.yaml index 71c7551c..8722a5a1 100644 --- a/target/executable/qualimap/qualimap_rnaseq/.config.vsh.yaml +++ b/target/executable/qualimap/qualimap_rnaseq/.config.vsh.yaml @@ -264,9 +264,9 @@ build_info: output: "target/executable/qualimap/qualimap_rnaseq" executable: "target/executable/qualimap/qualimap_rnaseq/qualimap_rnaseq" viash_version: "0.9.0" - git_commit: "58fff63a79486cc6ef8154ce25968f0d33233bbd" - git_remote: "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox" - git_tag: "v0.2.0-17-g58fff63" + git_commit: "6805838a0842a37d17685a5719668d185f6c8649" + git_remote: "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-18-g6805838" package_config: name: "biobox" version: "add_trimgalore" diff --git a/target/executable/qualimap/qualimap_rnaseq/qualimap_rnaseq b/target/executable/qualimap/qualimap_rnaseq/qualimap_rnaseq index 7b842fde..84588f11 100755 --- a/target/executable/qualimap/qualimap_rnaseq/qualimap_rnaseq +++ b/target/executable/qualimap/qualimap_rnaseq/qualimap_rnaseq @@ -527,9 +527,9 @@ RUN echo QualiMap: $(qualimap 2>&1 | grep QualiMap | sed 's/^.*QualiMap//') > /v LABEL org.opencontainers.image.authors="Dorien Roosen" LABEL org.opencontainers.image.description="Companion container for running component qualimap qualimap_rnaseq" -LABEL org.opencontainers.image.created="2024-09-19T09:11:28Z" +LABEL org.opencontainers.image.created="2024-09-19T12:59:37Z" LABEL org.opencontainers.image.source="https://bitbucket.org/kokonech/qualimap/commits/branch/master" -LABEL org.opencontainers.image.revision="58fff63a79486cc6ef8154ce25968f0d33233bbd" +LABEL org.opencontainers.image.revision="6805838a0842a37d17685a5719668d185f6c8649" LABEL org.opencontainers.image.version="add_trimgalore" VIASHDOCKER diff --git a/target/executable/rsem/rsem_calculate_expression/.config.vsh.yaml b/target/executable/rsem/rsem_calculate_expression/.config.vsh.yaml index 7a1a10a7..1c988e3c 100644 --- a/target/executable/rsem/rsem_calculate_expression/.config.vsh.yaml +++ b/target/executable/rsem/rsem_calculate_expression/.config.vsh.yaml @@ -852,9 +852,9 @@ build_info: output: "target/executable/rsem/rsem_calculate_expression" executable: "target/executable/rsem/rsem_calculate_expression/rsem_calculate_expression" viash_version: "0.9.0" - git_commit: "58fff63a79486cc6ef8154ce25968f0d33233bbd" - git_remote: "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox" - git_tag: "v0.2.0-17-g58fff63" + git_commit: "6805838a0842a37d17685a5719668d185f6c8649" + git_remote: "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-18-g6805838" package_config: name: "biobox" version: "add_trimgalore" diff --git a/target/executable/rsem/rsem_calculate_expression/rsem_calculate_expression b/target/executable/rsem/rsem_calculate_expression/rsem_calculate_expression index 822f1ded..e2038d55 100755 --- a/target/executable/rsem/rsem_calculate_expression/rsem_calculate_expression +++ b/target/executable/rsem/rsem_calculate_expression/rsem_calculate_expression @@ -991,9 +991,9 @@ echo "bowtie: `bowtie --version | grep -oP 'bowtie-align-s version \K\d+\.\d+\.\ echo "HISAT2: `hisat2 --version | grep -oP 'hisat2-align-s version \K\d+\.\d+\.\d+'`" >> /var/software_versions.txt LABEL org.opencontainers.image.description="Companion container for running component rsem rsem_calculate_expression" -LABEL org.opencontainers.image.created="2024-09-19T09:11:36Z" +LABEL org.opencontainers.image.created="2024-09-19T12:59:45Z" LABEL org.opencontainers.image.source="https://github.com/deweylab/RSEM" -LABEL org.opencontainers.image.revision="58fff63a79486cc6ef8154ce25968f0d33233bbd" +LABEL org.opencontainers.image.revision="6805838a0842a37d17685a5719668d185f6c8649" LABEL org.opencontainers.image.version="add_trimgalore" VIASHDOCKER diff --git a/target/executable/rsem/rsem_prepare_reference/.config.vsh.yaml b/target/executable/rsem/rsem_prepare_reference/.config.vsh.yaml index 81d16981..d703d180 100644 --- a/target/executable/rsem/rsem_prepare_reference/.config.vsh.yaml +++ b/target/executable/rsem/rsem_prepare_reference/.config.vsh.yaml @@ -416,9 +416,9 @@ build_info: output: "target/executable/rsem/rsem_prepare_reference" executable: "target/executable/rsem/rsem_prepare_reference/rsem_prepare_reference" viash_version: "0.9.0" - git_commit: "58fff63a79486cc6ef8154ce25968f0d33233bbd" - git_remote: "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox" - git_tag: "v0.2.0-17-g58fff63" + git_commit: "6805838a0842a37d17685a5719668d185f6c8649" + git_remote: "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-18-g6805838" package_config: name: "biobox" version: "add_trimgalore" diff --git a/target/executable/rsem/rsem_prepare_reference/rsem_prepare_reference b/target/executable/rsem/rsem_prepare_reference/rsem_prepare_reference index cdf7d2a5..1273ff4e 100755 --- a/target/executable/rsem/rsem_prepare_reference/rsem_prepare_reference +++ b/target/executable/rsem/rsem_prepare_reference/rsem_prepare_reference @@ -656,9 +656,9 @@ echo "HISAT2: `hisat2 --version | grep -oP 'hisat2-align-s version \K\d+\.\d+\.\ LABEL org.opencontainers.image.authors="Sai Nirmayi Yasa" LABEL org.opencontainers.image.description="Companion container for running component rsem rsem_prepare_reference" -LABEL org.opencontainers.image.created="2024-09-19T09:11:35Z" +LABEL org.opencontainers.image.created="2024-09-19T12:59:45Z" LABEL org.opencontainers.image.source="https://github.com/deweylab/RSEM" -LABEL org.opencontainers.image.revision="58fff63a79486cc6ef8154ce25968f0d33233bbd" +LABEL org.opencontainers.image.revision="6805838a0842a37d17685a5719668d185f6c8649" LABEL org.opencontainers.image.version="add_trimgalore" VIASHDOCKER diff --git a/target/executable/salmon/salmon_index/.config.vsh.yaml b/target/executable/salmon/salmon_index/.config.vsh.yaml index 24d1ab8f..fbc2f2fd 100644 --- a/target/executable/salmon/salmon_index/.config.vsh.yaml +++ b/target/executable/salmon/salmon_index/.config.vsh.yaml @@ -277,9 +277,9 @@ build_info: output: "target/executable/salmon/salmon_index" executable: "target/executable/salmon/salmon_index/salmon_index" viash_version: "0.9.0" - git_commit: "58fff63a79486cc6ef8154ce25968f0d33233bbd" - git_remote: "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox" - git_tag: "v0.2.0-17-g58fff63" + git_commit: "6805838a0842a37d17685a5719668d185f6c8649" + git_remote: "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-18-g6805838" package_config: name: "biobox" version: "add_trimgalore" diff --git a/target/executable/salmon/salmon_index/salmon_index b/target/executable/salmon/salmon_index/salmon_index index 277957b0..dfd0839d 100755 --- a/target/executable/salmon/salmon_index/salmon_index +++ b/target/executable/salmon/salmon_index/salmon_index @@ -546,9 +546,9 @@ RUN salmon index -v 2>&1 | sed 's/salmon \([0-9.]*\)/salmon: \1/' > /var/softwar LABEL org.opencontainers.image.authors="Sai Nirmayi Yasa" LABEL org.opencontainers.image.description="Companion container for running component salmon salmon_index" -LABEL org.opencontainers.image.created="2024-09-19T09:11:41Z" +LABEL org.opencontainers.image.created="2024-09-19T12:59:50Z" LABEL org.opencontainers.image.source="https://github.com/COMBINE-lab/salmon" -LABEL org.opencontainers.image.revision="58fff63a79486cc6ef8154ce25968f0d33233bbd" +LABEL org.opencontainers.image.revision="6805838a0842a37d17685a5719668d185f6c8649" LABEL org.opencontainers.image.version="add_trimgalore" VIASHDOCKER diff --git a/target/executable/salmon/salmon_quant/.config.vsh.yaml b/target/executable/salmon/salmon_quant/.config.vsh.yaml index 01e01a6f..706bebe4 100644 --- a/target/executable/salmon/salmon_quant/.config.vsh.yaml +++ b/target/executable/salmon/salmon_quant/.config.vsh.yaml @@ -1173,9 +1173,9 @@ build_info: output: "target/executable/salmon/salmon_quant" executable: "target/executable/salmon/salmon_quant/salmon_quant" viash_version: "0.9.0" - git_commit: "58fff63a79486cc6ef8154ce25968f0d33233bbd" - git_remote: "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox" - git_tag: "v0.2.0-17-g58fff63" + git_commit: "6805838a0842a37d17685a5719668d185f6c8649" + git_remote: "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-18-g6805838" package_config: name: "biobox" version: "add_trimgalore" diff --git a/target/executable/salmon/salmon_quant/salmon_quant b/target/executable/salmon/salmon_quant/salmon_quant index b60a0a24..a4fb6838 100755 --- a/target/executable/salmon/salmon_quant/salmon_quant +++ b/target/executable/salmon/salmon_quant/salmon_quant @@ -1168,9 +1168,9 @@ RUN salmon index -v 2>&1 | sed 's/salmon \([0-9.]*\)/salmon: \1/' > /var/softwar LABEL org.opencontainers.image.authors="Sai Nirmayi Yasa" LABEL org.opencontainers.image.description="Companion container for running component salmon salmon_quant" -LABEL org.opencontainers.image.created="2024-09-19T09:11:41Z" +LABEL org.opencontainers.image.created="2024-09-19T12:59:51Z" LABEL org.opencontainers.image.source="https://github.com/COMBINE-lab/salmon" -LABEL org.opencontainers.image.revision="58fff63a79486cc6ef8154ce25968f0d33233bbd" +LABEL org.opencontainers.image.revision="6805838a0842a37d17685a5719668d185f6c8649" LABEL org.opencontainers.image.version="add_trimgalore" VIASHDOCKER diff --git a/target/executable/samtools/samtools_collate/.config.vsh.yaml b/target/executable/samtools/samtools_collate/.config.vsh.yaml index 3d97b4d3..6c387306 100644 --- a/target/executable/samtools/samtools_collate/.config.vsh.yaml +++ b/target/executable/samtools/samtools_collate/.config.vsh.yaml @@ -264,9 +264,9 @@ build_info: output: "target/executable/samtools/samtools_collate" executable: "target/executable/samtools/samtools_collate/samtools_collate" viash_version: "0.9.0" - git_commit: "58fff63a79486cc6ef8154ce25968f0d33233bbd" - git_remote: "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox" - git_tag: "v0.2.0-17-g58fff63" + git_commit: "6805838a0842a37d17685a5719668d185f6c8649" + git_remote: "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-18-g6805838" package_config: name: "biobox" version: "add_trimgalore" diff --git a/target/executable/samtools/samtools_collate/samtools_collate b/target/executable/samtools/samtools_collate/samtools_collate index f4432aac..21ed2de0 100755 --- a/target/executable/samtools/samtools_collate/samtools_collate +++ b/target/executable/samtools/samtools_collate/samtools_collate @@ -519,9 +519,9 @@ sed 's#Using ##;s# \([0-9\.]*\)$#: \1#' > /var/software_versions.txt LABEL org.opencontainers.image.authors="Emma Rousseau" LABEL org.opencontainers.image.description="Companion container for running component samtools samtools_collate" -LABEL org.opencontainers.image.created="2024-09-19T09:11:27Z" +LABEL org.opencontainers.image.created="2024-09-19T12:59:35Z" LABEL org.opencontainers.image.source="https://github.com/samtools/samtools" -LABEL org.opencontainers.image.revision="58fff63a79486cc6ef8154ce25968f0d33233bbd" +LABEL org.opencontainers.image.revision="6805838a0842a37d17685a5719668d185f6c8649" LABEL org.opencontainers.image.version="add_trimgalore" VIASHDOCKER diff --git a/target/executable/samtools/samtools_faidx/.config.vsh.yaml b/target/executable/samtools/samtools_faidx/.config.vsh.yaml index 8ff5f385..5bde09b1 100644 --- a/target/executable/samtools/samtools_faidx/.config.vsh.yaml +++ b/target/executable/samtools/samtools_faidx/.config.vsh.yaml @@ -243,9 +243,9 @@ build_info: output: "target/executable/samtools/samtools_faidx" executable: "target/executable/samtools/samtools_faidx/samtools_faidx" viash_version: "0.9.0" - git_commit: "58fff63a79486cc6ef8154ce25968f0d33233bbd" - git_remote: "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox" - git_tag: "v0.2.0-17-g58fff63" + git_commit: "6805838a0842a37d17685a5719668d185f6c8649" + git_remote: "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-18-g6805838" package_config: name: "biobox" version: "add_trimgalore" diff --git a/target/executable/samtools/samtools_faidx/samtools_faidx b/target/executable/samtools/samtools_faidx/samtools_faidx index 992f5a20..91e50c81 100755 --- a/target/executable/samtools/samtools_faidx/samtools_faidx +++ b/target/executable/samtools/samtools_faidx/samtools_faidx @@ -512,9 +512,9 @@ sed 's#Using ##;s# \([0-9\.]*\)$#: \1#' > /var/software_versions.txt LABEL org.opencontainers.image.authors="Emma Rousseau" LABEL org.opencontainers.image.description="Companion container for running component samtools samtools_faidx" -LABEL org.opencontainers.image.created="2024-09-19T09:11:26Z" +LABEL org.opencontainers.image.created="2024-09-19T12:59:35Z" LABEL org.opencontainers.image.source="https://github.com/samtools/samtools" -LABEL org.opencontainers.image.revision="58fff63a79486cc6ef8154ce25968f0d33233bbd" +LABEL org.opencontainers.image.revision="6805838a0842a37d17685a5719668d185f6c8649" LABEL org.opencontainers.image.version="add_trimgalore" VIASHDOCKER diff --git a/target/executable/samtools/samtools_fasta/.config.vsh.yaml b/target/executable/samtools/samtools_fasta/.config.vsh.yaml index ec174d26..37ebf89c 100644 --- a/target/executable/samtools/samtools_fasta/.config.vsh.yaml +++ b/target/executable/samtools/samtools_fasta/.config.vsh.yaml @@ -433,9 +433,9 @@ build_info: output: "target/executable/samtools/samtools_fasta" executable: "target/executable/samtools/samtools_fasta/samtools_fasta" viash_version: "0.9.0" - git_commit: "58fff63a79486cc6ef8154ce25968f0d33233bbd" - git_remote: "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox" - git_tag: "v0.2.0-17-g58fff63" + git_commit: "6805838a0842a37d17685a5719668d185f6c8649" + git_remote: "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-18-g6805838" package_config: name: "biobox" version: "add_trimgalore" diff --git a/target/executable/samtools/samtools_fasta/samtools_fasta b/target/executable/samtools/samtools_fasta/samtools_fasta index 7aca3151..5623394f 100755 --- a/target/executable/samtools/samtools_fasta/samtools_fasta +++ b/target/executable/samtools/samtools_fasta/samtools_fasta @@ -625,9 +625,9 @@ sed 's#Using ##;s# \([0-9\.]*\)$#: \1#' > /var/software_versions.txt LABEL org.opencontainers.image.authors="Emma Rousseau" LABEL org.opencontainers.image.description="Companion container for running component samtools samtools_fasta" -LABEL org.opencontainers.image.created="2024-09-19T09:11:27Z" +LABEL org.opencontainers.image.created="2024-09-19T12:59:36Z" LABEL org.opencontainers.image.source="https://github.com/samtools/samtools" -LABEL org.opencontainers.image.revision="58fff63a79486cc6ef8154ce25968f0d33233bbd" +LABEL org.opencontainers.image.revision="6805838a0842a37d17685a5719668d185f6c8649" LABEL org.opencontainers.image.version="add_trimgalore" VIASHDOCKER diff --git a/target/executable/samtools/samtools_fastq/.config.vsh.yaml b/target/executable/samtools/samtools_fastq/.config.vsh.yaml index 5d3df8c8..247a7788 100644 --- a/target/executable/samtools/samtools_fastq/.config.vsh.yaml +++ b/target/executable/samtools/samtools_fastq/.config.vsh.yaml @@ -433,9 +433,9 @@ build_info: output: "target/executable/samtools/samtools_fastq" executable: "target/executable/samtools/samtools_fastq/samtools_fastq" viash_version: "0.9.0" - git_commit: "58fff63a79486cc6ef8154ce25968f0d33233bbd" - git_remote: "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox" - git_tag: "v0.2.0-17-g58fff63" + git_commit: "6805838a0842a37d17685a5719668d185f6c8649" + git_remote: "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-18-g6805838" package_config: name: "biobox" version: "add_trimgalore" diff --git a/target/executable/samtools/samtools_fastq/samtools_fastq b/target/executable/samtools/samtools_fastq/samtools_fastq index 16980d5a..55c7111c 100755 --- a/target/executable/samtools/samtools_fastq/samtools_fastq +++ b/target/executable/samtools/samtools_fastq/samtools_fastq @@ -626,9 +626,9 @@ sed 's#Using ##;s# \([0-9\.]*\)$#: \1#' > /var/software_versions.txt LABEL org.opencontainers.image.authors="Emma Rousseau" LABEL org.opencontainers.image.description="Companion container for running component samtools samtools_fastq" -LABEL org.opencontainers.image.created="2024-09-19T09:11:26Z" +LABEL org.opencontainers.image.created="2024-09-19T12:59:35Z" LABEL org.opencontainers.image.source="https://github.com/samtools/samtools" -LABEL org.opencontainers.image.revision="58fff63a79486cc6ef8154ce25968f0d33233bbd" +LABEL org.opencontainers.image.revision="6805838a0842a37d17685a5719668d185f6c8649" LABEL org.opencontainers.image.version="add_trimgalore" VIASHDOCKER diff --git a/target/executable/samtools/samtools_flagstat/.config.vsh.yaml b/target/executable/samtools/samtools_flagstat/.config.vsh.yaml index 0600394a..6c2a1bd0 100644 --- a/target/executable/samtools/samtools_flagstat/.config.vsh.yaml +++ b/target/executable/samtools/samtools_flagstat/.config.vsh.yaml @@ -173,9 +173,9 @@ build_info: output: "target/executable/samtools/samtools_flagstat" executable: "target/executable/samtools/samtools_flagstat/samtools_flagstat" viash_version: "0.9.0" - git_commit: "58fff63a79486cc6ef8154ce25968f0d33233bbd" - git_remote: "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox" - git_tag: "v0.2.0-17-g58fff63" + git_commit: "6805838a0842a37d17685a5719668d185f6c8649" + git_remote: "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-18-g6805838" package_config: name: "biobox" version: "add_trimgalore" diff --git a/target/executable/samtools/samtools_flagstat/samtools_flagstat b/target/executable/samtools/samtools_flagstat/samtools_flagstat index d4d636c7..a8684089 100755 --- a/target/executable/samtools/samtools_flagstat/samtools_flagstat +++ b/target/executable/samtools/samtools_flagstat/samtools_flagstat @@ -474,9 +474,9 @@ sed 's#Using ##;s# \([0-9\.]*\)$#: \1#' > /var/software_versions.txt LABEL org.opencontainers.image.authors="Emma Rousseau" LABEL org.opencontainers.image.description="Companion container for running component samtools samtools_flagstat" -LABEL org.opencontainers.image.created="2024-09-19T09:11:26Z" +LABEL org.opencontainers.image.created="2024-09-19T12:59:34Z" LABEL org.opencontainers.image.source="https://github.com/samtools/samtools" -LABEL org.opencontainers.image.revision="58fff63a79486cc6ef8154ce25968f0d33233bbd" +LABEL org.opencontainers.image.revision="6805838a0842a37d17685a5719668d185f6c8649" LABEL org.opencontainers.image.version="add_trimgalore" VIASHDOCKER diff --git a/target/executable/samtools/samtools_idxstats/.config.vsh.yaml b/target/executable/samtools/samtools_idxstats/.config.vsh.yaml index 8f32b2c5..9bc0dec0 100644 --- a/target/executable/samtools/samtools_idxstats/.config.vsh.yaml +++ b/target/executable/samtools/samtools_idxstats/.config.vsh.yaml @@ -183,9 +183,9 @@ build_info: output: "target/executable/samtools/samtools_idxstats" executable: "target/executable/samtools/samtools_idxstats/samtools_idxstats" viash_version: "0.9.0" - git_commit: "58fff63a79486cc6ef8154ce25968f0d33233bbd" - git_remote: "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox" - git_tag: "v0.2.0-17-g58fff63" + git_commit: "6805838a0842a37d17685a5719668d185f6c8649" + git_remote: "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-18-g6805838" package_config: name: "biobox" version: "add_trimgalore" diff --git a/target/executable/samtools/samtools_idxstats/samtools_idxstats b/target/executable/samtools/samtools_idxstats/samtools_idxstats index 242330f5..8bb8c3b2 100755 --- a/target/executable/samtools/samtools_idxstats/samtools_idxstats +++ b/target/executable/samtools/samtools_idxstats/samtools_idxstats @@ -478,9 +478,9 @@ sed 's#Using ##;s# \([0-9\.]*\)$#: \1#' > /var/software_versions.txt LABEL org.opencontainers.image.authors="Emma Rousseau" LABEL org.opencontainers.image.description="Companion container for running component samtools samtools_idxstats" -LABEL org.opencontainers.image.created="2024-09-19T09:11:25Z" +LABEL org.opencontainers.image.created="2024-09-19T12:59:34Z" LABEL org.opencontainers.image.source="https://github.com/samtools/samtools" -LABEL org.opencontainers.image.revision="58fff63a79486cc6ef8154ce25968f0d33233bbd" +LABEL org.opencontainers.image.revision="6805838a0842a37d17685a5719668d185f6c8649" LABEL org.opencontainers.image.version="add_trimgalore" VIASHDOCKER diff --git a/target/executable/samtools/samtools_index/.config.vsh.yaml b/target/executable/samtools/samtools_index/.config.vsh.yaml index 0fceba87..b3ed5118 100644 --- a/target/executable/samtools/samtools_index/.config.vsh.yaml +++ b/target/executable/samtools/samtools_index/.config.vsh.yaml @@ -189,9 +189,9 @@ build_info: output: "target/executable/samtools/samtools_index" executable: "target/executable/samtools/samtools_index/samtools_index" viash_version: "0.9.0" - git_commit: "58fff63a79486cc6ef8154ce25968f0d33233bbd" - git_remote: "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox" - git_tag: "v0.2.0-17-g58fff63" + git_commit: "6805838a0842a37d17685a5719668d185f6c8649" + git_remote: "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-18-g6805838" package_config: name: "biobox" version: "add_trimgalore" diff --git a/target/executable/samtools/samtools_index/samtools_index b/target/executable/samtools/samtools_index/samtools_index index 48aa14d1..06aeccf7 100755 --- a/target/executable/samtools/samtools_index/samtools_index +++ b/target/executable/samtools/samtools_index/samtools_index @@ -485,9 +485,9 @@ sed 's#Using ##;s# \([0-9\.]*\)$#: \1#' > /var/software_versions.txt LABEL org.opencontainers.image.authors="Emma Rousseau" LABEL org.opencontainers.image.description="Companion container for running component samtools samtools_index" -LABEL org.opencontainers.image.created="2024-09-19T09:11:25Z" +LABEL org.opencontainers.image.created="2024-09-19T12:59:33Z" LABEL org.opencontainers.image.source="https://github.com/samtools/samtools" -LABEL org.opencontainers.image.revision="58fff63a79486cc6ef8154ce25968f0d33233bbd" +LABEL org.opencontainers.image.revision="6805838a0842a37d17685a5719668d185f6c8649" LABEL org.opencontainers.image.version="add_trimgalore" VIASHDOCKER diff --git a/target/executable/samtools/samtools_sort/.config.vsh.yaml b/target/executable/samtools/samtools_sort/.config.vsh.yaml index 99731b50..a1627762 100644 --- a/target/executable/samtools/samtools_sort/.config.vsh.yaml +++ b/target/executable/samtools/samtools_sort/.config.vsh.yaml @@ -332,9 +332,9 @@ build_info: output: "target/executable/samtools/samtools_sort" executable: "target/executable/samtools/samtools_sort/samtools_sort" viash_version: "0.9.0" - git_commit: "58fff63a79486cc6ef8154ce25968f0d33233bbd" - git_remote: "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox" - git_tag: "v0.2.0-17-g58fff63" + git_commit: "6805838a0842a37d17685a5719668d185f6c8649" + git_remote: "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-18-g6805838" package_config: name: "biobox" version: "add_trimgalore" diff --git a/target/executable/samtools/samtools_sort/samtools_sort b/target/executable/samtools/samtools_sort/samtools_sort index 56f75b1f..39b93c0b 100755 --- a/target/executable/samtools/samtools_sort/samtools_sort +++ b/target/executable/samtools/samtools_sort/samtools_sort @@ -556,9 +556,9 @@ sed 's#Using ##;s# \([0-9\.]*\)$#: \1#' > /var/software_versions.txt LABEL org.opencontainers.image.authors="Emma Rousseau" LABEL org.opencontainers.image.description="Companion container for running component samtools samtools_sort" -LABEL org.opencontainers.image.created="2024-09-19T09:11:27Z" +LABEL org.opencontainers.image.created="2024-09-19T12:59:36Z" LABEL org.opencontainers.image.source="https://github.com/samtools/samtools" -LABEL org.opencontainers.image.revision="58fff63a79486cc6ef8154ce25968f0d33233bbd" +LABEL org.opencontainers.image.revision="6805838a0842a37d17685a5719668d185f6c8649" LABEL org.opencontainers.image.version="add_trimgalore" VIASHDOCKER diff --git a/target/executable/samtools/samtools_stats/.config.vsh.yaml b/target/executable/samtools/samtools_stats/.config.vsh.yaml index bff9b0e5..c5110501 100644 --- a/target/executable/samtools/samtools_stats/.config.vsh.yaml +++ b/target/executable/samtools/samtools_stats/.config.vsh.yaml @@ -401,9 +401,9 @@ build_info: output: "target/executable/samtools/samtools_stats" executable: "target/executable/samtools/samtools_stats/samtools_stats" viash_version: "0.9.0" - git_commit: "58fff63a79486cc6ef8154ce25968f0d33233bbd" - git_remote: "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox" - git_tag: "v0.2.0-17-g58fff63" + git_commit: "6805838a0842a37d17685a5719668d185f6c8649" + git_remote: "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-18-g6805838" package_config: name: "biobox" version: "add_trimgalore" diff --git a/target/executable/samtools/samtools_stats/samtools_stats b/target/executable/samtools/samtools_stats/samtools_stats index 7f2fbdc4..b06b1c6b 100755 --- a/target/executable/samtools/samtools_stats/samtools_stats +++ b/target/executable/samtools/samtools_stats/samtools_stats @@ -575,9 +575,9 @@ sed 's#Using ##;s# \([0-9\.]*\)$#: \1#' > /var/software_versions.txt LABEL org.opencontainers.image.authors="Emma Rousseau" LABEL org.opencontainers.image.description="Companion container for running component samtools samtools_stats" -LABEL org.opencontainers.image.created="2024-09-19T09:11:28Z" +LABEL org.opencontainers.image.created="2024-09-19T12:59:36Z" LABEL org.opencontainers.image.source="https://github.com/samtools/samtools" -LABEL org.opencontainers.image.revision="58fff63a79486cc6ef8154ce25968f0d33233bbd" +LABEL org.opencontainers.image.revision="6805838a0842a37d17685a5719668d185f6c8649" LABEL org.opencontainers.image.version="add_trimgalore" VIASHDOCKER diff --git a/target/executable/samtools/samtools_view/.config.vsh.yaml b/target/executable/samtools/samtools_view/.config.vsh.yaml index bfcccfd2..023fb3ba 100644 --- a/target/executable/samtools/samtools_view/.config.vsh.yaml +++ b/target/executable/samtools/samtools_view/.config.vsh.yaml @@ -665,9 +665,9 @@ build_info: output: "target/executable/samtools/samtools_view" executable: "target/executable/samtools/samtools_view/samtools_view" viash_version: "0.9.0" - git_commit: "58fff63a79486cc6ef8154ce25968f0d33233bbd" - git_remote: "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox" - git_tag: "v0.2.0-17-g58fff63" + git_commit: "6805838a0842a37d17685a5719668d185f6c8649" + git_remote: "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-18-g6805838" package_config: name: "biobox" version: "add_trimgalore" diff --git a/target/executable/samtools/samtools_view/samtools_view b/target/executable/samtools/samtools_view/samtools_view index 66e776a6..a7b72ba4 100755 --- a/target/executable/samtools/samtools_view/samtools_view +++ b/target/executable/samtools/samtools_view/samtools_view @@ -825,9 +825,9 @@ sed 's#Using ##;s# \([0-9\.]*\)$#: \1#' > /var/software_versions.txt LABEL org.opencontainers.image.authors="Emma Rousseau" LABEL org.opencontainers.image.description="Companion container for running component samtools samtools_view" -LABEL org.opencontainers.image.created="2024-09-19T09:11:25Z" +LABEL org.opencontainers.image.created="2024-09-19T12:59:34Z" LABEL org.opencontainers.image.source="https://github.com/samtools/samtools" -LABEL org.opencontainers.image.revision="58fff63a79486cc6ef8154ce25968f0d33233bbd" +LABEL org.opencontainers.image.revision="6805838a0842a37d17685a5719668d185f6c8649" LABEL org.opencontainers.image.version="add_trimgalore" VIASHDOCKER diff --git a/target/executable/seqtk/seqtk_sample/.config.vsh.yaml b/target/executable/seqtk/seqtk_sample/.config.vsh.yaml index 2224d321..1c5e8c3f 100644 --- a/target/executable/seqtk/seqtk_sample/.config.vsh.yaml +++ b/target/executable/seqtk/seqtk_sample/.config.vsh.yaml @@ -173,9 +173,9 @@ build_info: output: "target/executable/seqtk/seqtk_sample" executable: "target/executable/seqtk/seqtk_sample/seqtk_sample" viash_version: "0.9.0" - git_commit: "58fff63a79486cc6ef8154ce25968f0d33233bbd" - git_remote: "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox" - git_tag: "v0.2.0-17-g58fff63" + git_commit: "6805838a0842a37d17685a5719668d185f6c8649" + git_remote: "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-18-g6805838" package_config: name: "biobox" version: "add_trimgalore" diff --git a/target/executable/seqtk/seqtk_sample/seqtk_sample b/target/executable/seqtk/seqtk_sample/seqtk_sample index 7d33a4ef..271a7637 100755 --- a/target/executable/seqtk/seqtk_sample/seqtk_sample +++ b/target/executable/seqtk/seqtk_sample/seqtk_sample @@ -481,9 +481,9 @@ FROM quay.io/biocontainers/seqtk:1.4--he4a0461_2 ENTRYPOINT [] LABEL org.opencontainers.image.authors="Jakub Majercik" LABEL org.opencontainers.image.description="Companion container for running component seqtk seqtk_sample" -LABEL org.opencontainers.image.created="2024-09-19T09:11:44Z" +LABEL org.opencontainers.image.created="2024-09-19T12:59:54Z" LABEL org.opencontainers.image.source="https://github.com/lh3/seqtk/tree/v1.4" -LABEL org.opencontainers.image.revision="58fff63a79486cc6ef8154ce25968f0d33233bbd" +LABEL org.opencontainers.image.revision="6805838a0842a37d17685a5719668d185f6c8649" LABEL org.opencontainers.image.version="add_trimgalore" VIASHDOCKER diff --git a/target/executable/seqtk/seqtk_subseq/.config.vsh.yaml b/target/executable/seqtk/seqtk_subseq/.config.vsh.yaml index 171c24fc..556cd422 100644 --- a/target/executable/seqtk/seqtk_subseq/.config.vsh.yaml +++ b/target/executable/seqtk/seqtk_subseq/.config.vsh.yaml @@ -196,9 +196,9 @@ build_info: output: "target/executable/seqtk/seqtk_subseq" executable: "target/executable/seqtk/seqtk_subseq/seqtk_subseq" viash_version: "0.9.0" - git_commit: "58fff63a79486cc6ef8154ce25968f0d33233bbd" - git_remote: "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox" - git_tag: "v0.2.0-17-g58fff63" + git_commit: "6805838a0842a37d17685a5719668d185f6c8649" + git_remote: "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-18-g6805838" package_config: name: "biobox" version: "add_trimgalore" diff --git a/target/executable/seqtk/seqtk_subseq/seqtk_subseq b/target/executable/seqtk/seqtk_subseq/seqtk_subseq index 1fbe2e99..4dcbd2f9 100755 --- a/target/executable/seqtk/seqtk_subseq/seqtk_subseq +++ b/target/executable/seqtk/seqtk_subseq/seqtk_subseq @@ -491,9 +491,9 @@ RUN echo $(echo $(seqtk 2>&1) | sed -n 's/.*\(Version: [^ ]*\).*/\1/p') > /var/s LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo" LABEL org.opencontainers.image.description="Companion container for running component seqtk seqtk_subseq" -LABEL org.opencontainers.image.created="2024-09-19T09:11:44Z" +LABEL org.opencontainers.image.created="2024-09-19T12:59:54Z" LABEL org.opencontainers.image.source="https://github.com/lh3/seqtk/tree/v1.4" -LABEL org.opencontainers.image.revision="58fff63a79486cc6ef8154ce25968f0d33233bbd" +LABEL org.opencontainers.image.revision="6805838a0842a37d17685a5719668d185f6c8649" LABEL org.opencontainers.image.version="add_trimgalore" VIASHDOCKER diff --git a/target/executable/sortmerna/.config.vsh.yaml b/target/executable/sortmerna/.config.vsh.yaml index 634b9574..56210b27 100644 --- a/target/executable/sortmerna/.config.vsh.yaml +++ b/target/executable/sortmerna/.config.vsh.yaml @@ -591,9 +591,9 @@ build_info: output: "target/executable/sortmerna" executable: "target/executable/sortmerna/sortmerna" viash_version: "0.9.0" - git_commit: "58fff63a79486cc6ef8154ce25968f0d33233bbd" - git_remote: "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox" - git_tag: "v0.2.0-17-g58fff63" + git_commit: "6805838a0842a37d17685a5719668d185f6c8649" + git_remote: "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-18-g6805838" package_config: name: "biobox" version: "add_trimgalore" diff --git a/target/executable/sortmerna/sortmerna b/target/executable/sortmerna/sortmerna index 7920e5d3..fca33044 100755 --- a/target/executable/sortmerna/sortmerna +++ b/target/executable/sortmerna/sortmerna @@ -744,9 +744,9 @@ wget --no-check-certificate https://github.com/sortmerna/sortmerna/releases/down bash sortmerna-4.3.6-Linux.sh --skip-license LABEL org.opencontainers.image.description="Companion container for running component sortmerna" -LABEL org.opencontainers.image.created="2024-09-19T09:11:40Z" +LABEL org.opencontainers.image.created="2024-09-19T12:59:50Z" LABEL org.opencontainers.image.source="https://github.com/sortmerna/sortmerna" -LABEL org.opencontainers.image.revision="58fff63a79486cc6ef8154ce25968f0d33233bbd" +LABEL org.opencontainers.image.revision="6805838a0842a37d17685a5719668d185f6c8649" LABEL org.opencontainers.image.version="add_trimgalore" VIASHDOCKER diff --git a/target/executable/star/star_align_reads/.config.vsh.yaml b/target/executable/star/star_align_reads/.config.vsh.yaml index 4a281c5e..7391c031 100644 --- a/target/executable/star/star_align_reads/.config.vsh.yaml +++ b/target/executable/star/star_align_reads/.config.vsh.yaml @@ -2663,9 +2663,9 @@ build_info: output: "target/executable/star/star_align_reads" executable: "target/executable/star/star_align_reads/star_align_reads" viash_version: "0.9.0" - git_commit: "58fff63a79486cc6ef8154ce25968f0d33233bbd" - git_remote: "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox" - git_tag: "v0.2.0-17-g58fff63" + git_commit: "6805838a0842a37d17685a5719668d185f6c8649" + git_remote: "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-18-g6805838" package_config: name: "biobox" version: "add_trimgalore" diff --git a/target/executable/star/star_align_reads/star_align_reads b/target/executable/star/star_align_reads/star_align_reads index 54e0da15..99afaab6 100755 --- a/target/executable/star/star_align_reads/star_align_reads +++ b/target/executable/star/star_align_reads/star_align_reads @@ -1920,9 +1920,9 @@ RUN STAR --version | sed 's#\(.*\)#star: "\1"#' > /var/software_versions.txt LABEL org.opencontainers.image.authors="Angela Oliveira Pisco, Robrecht Cannoodt" LABEL org.opencontainers.image.description="Companion container for running component star star_align_reads" -LABEL org.opencontainers.image.created="2024-09-19T09:11:34Z" +LABEL org.opencontainers.image.created="2024-09-19T12:59:43Z" LABEL org.opencontainers.image.source="https://github.com/alexdobin/STAR" -LABEL org.opencontainers.image.revision="58fff63a79486cc6ef8154ce25968f0d33233bbd" +LABEL org.opencontainers.image.revision="6805838a0842a37d17685a5719668d185f6c8649" LABEL org.opencontainers.image.version="add_trimgalore" VIASHDOCKER diff --git a/target/executable/star/star_genome_generate/.config.vsh.yaml b/target/executable/star/star_genome_generate/.config.vsh.yaml index 5b123b3e..dd8ac074 100644 --- a/target/executable/star/star_genome_generate/.config.vsh.yaml +++ b/target/executable/star/star_genome_generate/.config.vsh.yaml @@ -333,9 +333,9 @@ build_info: output: "target/executable/star/star_genome_generate" executable: "target/executable/star/star_genome_generate/star_genome_generate" viash_version: "0.9.0" - git_commit: "58fff63a79486cc6ef8154ce25968f0d33233bbd" - git_remote: "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox" - git_tag: "v0.2.0-17-g58fff63" + git_commit: "6805838a0842a37d17685a5719668d185f6c8649" + git_remote: "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-18-g6805838" package_config: name: "biobox" version: "add_trimgalore" diff --git a/target/executable/star/star_genome_generate/star_genome_generate b/target/executable/star/star_genome_generate/star_genome_generate index 3303a362..19ff602f 100755 --- a/target/executable/star/star_genome_generate/star_genome_generate +++ b/target/executable/star/star_genome_generate/star_genome_generate @@ -577,9 +577,9 @@ RUN STAR --version | sed 's#\(.*\)#star: "\1"#' > /var/software_versions.txt LABEL org.opencontainers.image.authors="Sai Nirmayi Yasa" LABEL org.opencontainers.image.description="Companion container for running component star star_genome_generate" -LABEL org.opencontainers.image.created="2024-09-19T09:11:33Z" +LABEL org.opencontainers.image.created="2024-09-19T12:59:42Z" LABEL org.opencontainers.image.source="https://github.com/alexdobin/STAR" -LABEL org.opencontainers.image.revision="58fff63a79486cc6ef8154ce25968f0d33233bbd" +LABEL org.opencontainers.image.revision="6805838a0842a37d17685a5719668d185f6c8649" LABEL org.opencontainers.image.version="add_trimgalore" VIASHDOCKER diff --git a/target/executable/trimgalore/.config.vsh.yaml b/target/executable/trimgalore/.config.vsh.yaml index 4d15566e..e7091357 100644 --- a/target/executable/trimgalore/.config.vsh.yaml +++ b/target/executable/trimgalore/.config.vsh.yaml @@ -770,9 +770,9 @@ build_info: output: "target/executable/trimgalore" executable: "target/executable/trimgalore/trimgalore" viash_version: "0.9.0" - git_commit: "58fff63a79486cc6ef8154ce25968f0d33233bbd" - git_remote: "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox" - git_tag: "v0.2.0-17-g58fff63" + git_commit: "6805838a0842a37d17685a5719668d185f6c8649" + git_remote: "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-18-g6805838" package_config: name: "biobox" version: "add_trimgalore" diff --git a/target/executable/trimgalore/trimgalore b/target/executable/trimgalore/trimgalore index 9b262340..66f6544e 100755 --- a/target/executable/trimgalore/trimgalore +++ b/target/executable/trimgalore/trimgalore @@ -881,9 +881,9 @@ RUN echo "TrimGalore: `trim_galore --version | sed -n 's/.*version\s\+\([0-9]\+\ LABEL org.opencontainers.image.authors="Sai Nirmayi Yasa" LABEL org.opencontainers.image.description="Companion container for running component trimgalore" -LABEL org.opencontainers.image.created="2024-09-19T09:11:39Z" +LABEL org.opencontainers.image.created="2024-09-19T12:59:48Z" LABEL org.opencontainers.image.source="https://github.com/FelixKrueger/TrimGalore" -LABEL org.opencontainers.image.revision="58fff63a79486cc6ef8154ce25968f0d33233bbd" +LABEL org.opencontainers.image.revision="6805838a0842a37d17685a5719668d185f6c8649" LABEL org.opencontainers.image.version="add_trimgalore" VIASHDOCKER diff --git a/target/executable/umi_tools/umi_tools_dedup/.config.vsh.yaml b/target/executable/umi_tools/umi_tools_dedup/.config.vsh.yaml index 79d9a742..615b6166 100644 --- a/target/executable/umi_tools/umi_tools_dedup/.config.vsh.yaml +++ b/target/executable/umi_tools/umi_tools_dedup/.config.vsh.yaml @@ -611,9 +611,9 @@ build_info: output: "target/executable/umi_tools/umi_tools_dedup" executable: "target/executable/umi_tools/umi_tools_dedup/umi_tools_dedup" viash_version: "0.9.0" - git_commit: "58fff63a79486cc6ef8154ce25968f0d33233bbd" - git_remote: "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox" - git_tag: "v0.2.0-17-g58fff63" + git_commit: "6805838a0842a37d17685a5719668d185f6c8649" + git_remote: "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-18-g6805838" package_config: name: "biobox" version: "add_trimgalore" diff --git a/target/executable/umi_tools/umi_tools_dedup/umi_tools_dedup b/target/executable/umi_tools/umi_tools_dedup/umi_tools_dedup index 0aeeea47..f9b594d5 100755 --- a/target/executable/umi_tools/umi_tools_dedup/umi_tools_dedup +++ b/target/executable/umi_tools/umi_tools_dedup/umi_tools_dedup @@ -770,9 +770,9 @@ RUN umi_tools -v | sed 's/ version//g' > /var/software_versions.txt LABEL org.opencontainers.image.authors="Emma Rousseau" LABEL org.opencontainers.image.description="Companion container for running component umi_tools umi_tools_dedup" -LABEL org.opencontainers.image.created="2024-09-19T09:11:30Z" +LABEL org.opencontainers.image.created="2024-09-19T12:59:39Z" LABEL org.opencontainers.image.source="https://github.com/CGATOxford/UMI-tools" -LABEL org.opencontainers.image.revision="58fff63a79486cc6ef8154ce25968f0d33233bbd" +LABEL org.opencontainers.image.revision="6805838a0842a37d17685a5719668d185f6c8649" LABEL org.opencontainers.image.version="add_trimgalore" VIASHDOCKER diff --git a/target/executable/umi_tools/umi_tools_extract/.config.vsh.yaml b/target/executable/umi_tools/umi_tools_extract/.config.vsh.yaml index 7251d71c..26e1f73d 100644 --- a/target/executable/umi_tools/umi_tools_extract/.config.vsh.yaml +++ b/target/executable/umi_tools/umi_tools_extract/.config.vsh.yaml @@ -449,9 +449,9 @@ build_info: output: "target/executable/umi_tools/umi_tools_extract" executable: "target/executable/umi_tools/umi_tools_extract/umi_tools_extract" viash_version: "0.9.0" - git_commit: "58fff63a79486cc6ef8154ce25968f0d33233bbd" - git_remote: "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox" - git_tag: "v0.2.0-17-g58fff63" + git_commit: "6805838a0842a37d17685a5719668d185f6c8649" + git_remote: "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-18-g6805838" package_config: name: "biobox" version: "add_trimgalore" diff --git a/target/executable/umi_tools/umi_tools_extract/umi_tools_extract b/target/executable/umi_tools/umi_tools_extract/umi_tools_extract index d0da387a..85f680ff 100755 --- a/target/executable/umi_tools/umi_tools_extract/umi_tools_extract +++ b/target/executable/umi_tools/umi_tools_extract/umi_tools_extract @@ -637,9 +637,9 @@ ENTRYPOINT [] RUN umi_tools -v | sed 's/ version//g' > /var/software_versions.txt LABEL org.opencontainers.image.description="Companion container for running component umi_tools umi_tools_extract" -LABEL org.opencontainers.image.created="2024-09-19T09:11:29Z" +LABEL org.opencontainers.image.created="2024-09-19T12:59:38Z" LABEL org.opencontainers.image.source="https://github.com/CGATOxford/UMI-tools" -LABEL org.opencontainers.image.revision="58fff63a79486cc6ef8154ce25968f0d33233bbd" +LABEL org.opencontainers.image.revision="6805838a0842a37d17685a5719668d185f6c8649" LABEL org.opencontainers.image.version="add_trimgalore" VIASHDOCKER diff --git a/target/executable/umi_tools/umi_tools_prepareforrsem/.config.vsh.yaml b/target/executable/umi_tools/umi_tools_prepareforrsem/.config.vsh.yaml index e9b5b49c..e9110887 100644 --- a/target/executable/umi_tools/umi_tools_prepareforrsem/.config.vsh.yaml +++ b/target/executable/umi_tools/umi_tools_prepareforrsem/.config.vsh.yaml @@ -256,9 +256,9 @@ build_info: output: "target/executable/umi_tools/umi_tools_prepareforrsem" executable: "target/executable/umi_tools/umi_tools_prepareforrsem/umi_tools_prepareforrsem" viash_version: "0.9.0" - git_commit: "58fff63a79486cc6ef8154ce25968f0d33233bbd" - git_remote: "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox" - git_tag: "v0.2.0-17-g58fff63" + git_commit: "6805838a0842a37d17685a5719668d185f6c8649" + git_remote: "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-18-g6805838" package_config: name: "biobox" version: "add_trimgalore" diff --git a/target/executable/umi_tools/umi_tools_prepareforrsem/umi_tools_prepareforrsem b/target/executable/umi_tools/umi_tools_prepareforrsem/umi_tools_prepareforrsem index e8792d60..a1a98eb5 100755 --- a/target/executable/umi_tools/umi_tools_prepareforrsem/umi_tools_prepareforrsem +++ b/target/executable/umi_tools/umi_tools_prepareforrsem/umi_tools_prepareforrsem @@ -519,9 +519,9 @@ ENTRYPOINT [] RUN umi_tools -v | sed 's/ version//g' > /var/software_versions.txt LABEL org.opencontainers.image.description="Companion container for running component umi_tools umi_tools_prepareforrsem" -LABEL org.opencontainers.image.created="2024-09-19T09:11:30Z" +LABEL org.opencontainers.image.created="2024-09-19T12:59:38Z" LABEL org.opencontainers.image.source="https://github.com/CGATOxford/UMI-tools" -LABEL org.opencontainers.image.revision="58fff63a79486cc6ef8154ce25968f0d33233bbd" +LABEL org.opencontainers.image.revision="6805838a0842a37d17685a5719668d185f6c8649" LABEL org.opencontainers.image.version="add_trimgalore" VIASHDOCKER diff --git a/target/nextflow/agat/agat_convert_bed2gff/.config.vsh.yaml b/target/nextflow/agat/agat_convert_bed2gff/.config.vsh.yaml index 3ab999d0..f5dc83b2 100644 --- a/target/nextflow/agat/agat_convert_bed2gff/.config.vsh.yaml +++ b/target/nextflow/agat/agat_convert_bed2gff/.config.vsh.yaml @@ -235,9 +235,9 @@ build_info: output: "target/nextflow/agat/agat_convert_bed2gff" executable: "target/nextflow/agat/agat_convert_bed2gff/main.nf" viash_version: "0.9.0" - git_commit: "58fff63a79486cc6ef8154ce25968f0d33233bbd" - git_remote: "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox" - git_tag: "v0.2.0-17-g58fff63" + git_commit: "6805838a0842a37d17685a5719668d185f6c8649" + git_remote: "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-18-g6805838" package_config: name: "biobox" version: "add_trimgalore" diff --git a/target/nextflow/agat/agat_convert_bed2gff/main.nf b/target/nextflow/agat/agat_convert_bed2gff/main.nf index 13e7376c..f7384842 100644 --- a/target/nextflow/agat/agat_convert_bed2gff/main.nf +++ b/target/nextflow/agat/agat_convert_bed2gff/main.nf @@ -3092,9 +3092,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/agat/agat_convert_bed2gff", "viash_version" : "0.9.0", - "git_commit" : "58fff63a79486cc6ef8154ce25968f0d33233bbd", - "git_remote" : "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-17-g58fff63" + "git_commit" : "6805838a0842a37d17685a5719668d185f6c8649", + "git_remote" : "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-18-g6805838" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/agat/agat_convert_embl2gff/.config.vsh.yaml b/target/nextflow/agat/agat_convert_embl2gff/.config.vsh.yaml index 8e5f3604..8e4ac987 100644 --- a/target/nextflow/agat/agat_convert_embl2gff/.config.vsh.yaml +++ b/target/nextflow/agat/agat_convert_embl2gff/.config.vsh.yaml @@ -225,9 +225,9 @@ build_info: output: "target/nextflow/agat/agat_convert_embl2gff" executable: "target/nextflow/agat/agat_convert_embl2gff/main.nf" viash_version: "0.9.0" - git_commit: "58fff63a79486cc6ef8154ce25968f0d33233bbd" - git_remote: "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox" - git_tag: "v0.2.0-17-g58fff63" + git_commit: "6805838a0842a37d17685a5719668d185f6c8649" + git_remote: "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-18-g6805838" package_config: name: "biobox" version: "add_trimgalore" diff --git a/target/nextflow/agat/agat_convert_embl2gff/main.nf b/target/nextflow/agat/agat_convert_embl2gff/main.nf index ecee32e6..a73b8dd0 100644 --- a/target/nextflow/agat/agat_convert_embl2gff/main.nf +++ b/target/nextflow/agat/agat_convert_embl2gff/main.nf @@ -3085,9 +3085,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/agat/agat_convert_embl2gff", "viash_version" : "0.9.0", - "git_commit" : "58fff63a79486cc6ef8154ce25968f0d33233bbd", - "git_remote" : "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-17-g58fff63" + "git_commit" : "6805838a0842a37d17685a5719668d185f6c8649", + "git_remote" : "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-18-g6805838" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/agat/agat_convert_genscan2gff/.config.vsh.yaml b/target/nextflow/agat/agat_convert_genscan2gff/.config.vsh.yaml index 83175435..e5def13d 100644 --- a/target/nextflow/agat/agat_convert_genscan2gff/.config.vsh.yaml +++ b/target/nextflow/agat/agat_convert_genscan2gff/.config.vsh.yaml @@ -230,9 +230,9 @@ build_info: output: "target/nextflow/agat/agat_convert_genscan2gff" executable: "target/nextflow/agat/agat_convert_genscan2gff/main.nf" viash_version: "0.9.0" - git_commit: "58fff63a79486cc6ef8154ce25968f0d33233bbd" - git_remote: "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox" - git_tag: "v0.2.0-17-g58fff63" + git_commit: "6805838a0842a37d17685a5719668d185f6c8649" + git_remote: "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-18-g6805838" package_config: name: "biobox" version: "add_trimgalore" diff --git a/target/nextflow/agat/agat_convert_genscan2gff/main.nf b/target/nextflow/agat/agat_convert_genscan2gff/main.nf index 6a2f9b94..802b0615 100644 --- a/target/nextflow/agat/agat_convert_genscan2gff/main.nf +++ b/target/nextflow/agat/agat_convert_genscan2gff/main.nf @@ -3087,9 +3087,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/agat/agat_convert_genscan2gff", "viash_version" : "0.9.0", - "git_commit" : "58fff63a79486cc6ef8154ce25968f0d33233bbd", - "git_remote" : "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-17-g58fff63" + "git_commit" : "6805838a0842a37d17685a5719668d185f6c8649", + "git_remote" : "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-18-g6805838" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/agat/agat_convert_sp_gff2gtf/.config.vsh.yaml b/target/nextflow/agat/agat_convert_sp_gff2gtf/.config.vsh.yaml index bdb53214..2d49d533 100644 --- a/target/nextflow/agat/agat_convert_sp_gff2gtf/.config.vsh.yaml +++ b/target/nextflow/agat/agat_convert_sp_gff2gtf/.config.vsh.yaml @@ -228,9 +228,9 @@ build_info: output: "target/nextflow/agat/agat_convert_sp_gff2gtf" executable: "target/nextflow/agat/agat_convert_sp_gff2gtf/main.nf" viash_version: "0.9.0" - git_commit: "58fff63a79486cc6ef8154ce25968f0d33233bbd" - git_remote: "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox" - git_tag: "v0.2.0-17-g58fff63" + git_commit: "6805838a0842a37d17685a5719668d185f6c8649" + git_remote: "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-18-g6805838" package_config: name: "biobox" version: "add_trimgalore" diff --git a/target/nextflow/agat/agat_convert_sp_gff2gtf/main.nf b/target/nextflow/agat/agat_convert_sp_gff2gtf/main.nf index c4c47a98..0bb5f45f 100644 --- a/target/nextflow/agat/agat_convert_sp_gff2gtf/main.nf +++ b/target/nextflow/agat/agat_convert_sp_gff2gtf/main.nf @@ -3068,9 +3068,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/agat/agat_convert_sp_gff2gtf", "viash_version" : "0.9.0", - "git_commit" : "58fff63a79486cc6ef8154ce25968f0d33233bbd", - "git_remote" : "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-17-g58fff63" + "git_commit" : "6805838a0842a37d17685a5719668d185f6c8649", + "git_remote" : "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-18-g6805838" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/agat/agat_convert_sp_gff2tsv/.config.vsh.yaml b/target/nextflow/agat/agat_convert_sp_gff2tsv/.config.vsh.yaml index 6c1df0d6..67ff55c3 100644 --- a/target/nextflow/agat/agat_convert_sp_gff2tsv/.config.vsh.yaml +++ b/target/nextflow/agat/agat_convert_sp_gff2tsv/.config.vsh.yaml @@ -188,9 +188,9 @@ build_info: output: "target/nextflow/agat/agat_convert_sp_gff2tsv" executable: "target/nextflow/agat/agat_convert_sp_gff2tsv/main.nf" viash_version: "0.9.0" - git_commit: "58fff63a79486cc6ef8154ce25968f0d33233bbd" - git_remote: "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox" - git_tag: "v0.2.0-17-g58fff63" + git_commit: "6805838a0842a37d17685a5719668d185f6c8649" + git_remote: "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-18-g6805838" package_config: name: "biobox" version: "add_trimgalore" diff --git a/target/nextflow/agat/agat_convert_sp_gff2tsv/main.nf b/target/nextflow/agat/agat_convert_sp_gff2tsv/main.nf index 64e64c7e..e2a7ff50 100644 --- a/target/nextflow/agat/agat_convert_sp_gff2tsv/main.nf +++ b/target/nextflow/agat/agat_convert_sp_gff2tsv/main.nf @@ -3046,9 +3046,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/agat/agat_convert_sp_gff2tsv", "viash_version" : "0.9.0", - "git_commit" : "58fff63a79486cc6ef8154ce25968f0d33233bbd", - "git_remote" : "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-17-g58fff63" + "git_commit" : "6805838a0842a37d17685a5719668d185f6c8649", + "git_remote" : "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-18-g6805838" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/agat/agat_convert_sp_gxf2gxf/.config.vsh.yaml b/target/nextflow/agat/agat_convert_sp_gxf2gxf/.config.vsh.yaml index aa5c2434..76c222f9 100644 --- a/target/nextflow/agat/agat_convert_sp_gxf2gxf/.config.vsh.yaml +++ b/target/nextflow/agat/agat_convert_sp_gxf2gxf/.config.vsh.yaml @@ -195,9 +195,9 @@ build_info: output: "target/nextflow/agat/agat_convert_sp_gxf2gxf" executable: "target/nextflow/agat/agat_convert_sp_gxf2gxf/main.nf" viash_version: "0.9.0" - git_commit: "58fff63a79486cc6ef8154ce25968f0d33233bbd" - git_remote: "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox" - git_tag: "v0.2.0-17-g58fff63" + git_commit: "6805838a0842a37d17685a5719668d185f6c8649" + git_remote: "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-18-g6805838" package_config: name: "biobox" version: "add_trimgalore" diff --git a/target/nextflow/agat/agat_convert_sp_gxf2gxf/main.nf b/target/nextflow/agat/agat_convert_sp_gxf2gxf/main.nf index 587bc654..98efd696 100644 --- a/target/nextflow/agat/agat_convert_sp_gxf2gxf/main.nf +++ b/target/nextflow/agat/agat_convert_sp_gxf2gxf/main.nf @@ -3046,9 +3046,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/agat/agat_convert_sp_gxf2gxf", "viash_version" : "0.9.0", - "git_commit" : "58fff63a79486cc6ef8154ce25968f0d33233bbd", - "git_remote" : "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-17-g58fff63" + "git_commit" : "6805838a0842a37d17685a5719668d185f6c8649", + "git_remote" : "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-18-g6805838" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/arriba/.config.vsh.yaml b/target/nextflow/arriba/.config.vsh.yaml index d3ca4a4e..91791abe 100644 --- a/target/nextflow/arriba/.config.vsh.yaml +++ b/target/nextflow/arriba/.config.vsh.yaml @@ -706,9 +706,9 @@ build_info: output: "target/nextflow/arriba" executable: "target/nextflow/arriba/main.nf" viash_version: "0.9.0" - git_commit: "58fff63a79486cc6ef8154ce25968f0d33233bbd" - git_remote: "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox" - git_tag: "v0.2.0-17-g58fff63" + git_commit: "6805838a0842a37d17685a5719668d185f6c8649" + git_remote: "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-18-g6805838" package_config: name: "biobox" version: "add_trimgalore" diff --git a/target/nextflow/arriba/main.nf b/target/nextflow/arriba/main.nf index d7a0b60d..4d1663f7 100644 --- a/target/nextflow/arriba/main.nf +++ b/target/nextflow/arriba/main.nf @@ -3592,9 +3592,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/arriba", "viash_version" : "0.9.0", - "git_commit" : "58fff63a79486cc6ef8154ce25968f0d33233bbd", - "git_remote" : "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-17-g58fff63" + "git_commit" : "6805838a0842a37d17685a5719668d185f6c8649", + "git_remote" : "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-18-g6805838" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/bcftools/bcftools_annotate/.config.vsh.yaml b/target/nextflow/bcftools/bcftools_annotate/.config.vsh.yaml index 1f6283d2..4922cfc9 100644 --- a/target/nextflow/bcftools/bcftools_annotate/.config.vsh.yaml +++ b/target/nextflow/bcftools/bcftools_annotate/.config.vsh.yaml @@ -469,9 +469,9 @@ build_info: output: "target/nextflow/bcftools/bcftools_annotate" executable: "target/nextflow/bcftools/bcftools_annotate/main.nf" viash_version: "0.9.0" - git_commit: "58fff63a79486cc6ef8154ce25968f0d33233bbd" - git_remote: "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox" - git_tag: "v0.2.0-17-g58fff63" + git_commit: "6805838a0842a37d17685a5719668d185f6c8649" + git_remote: "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-18-g6805838" package_config: name: "biobox" version: "add_trimgalore" diff --git a/target/nextflow/bcftools/bcftools_annotate/main.nf b/target/nextflow/bcftools/bcftools_annotate/main.nf index 6685781f..a8112be5 100644 --- a/target/nextflow/bcftools/bcftools_annotate/main.nf +++ b/target/nextflow/bcftools/bcftools_annotate/main.nf @@ -3335,9 +3335,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/bcftools/bcftools_annotate", "viash_version" : "0.9.0", - "git_commit" : "58fff63a79486cc6ef8154ce25968f0d33233bbd", - "git_remote" : "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-17-g58fff63" + "git_commit" : "6805838a0842a37d17685a5719668d185f6c8649", + "git_remote" : "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-18-g6805838" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/bcftools/bcftools_concat/.config.vsh.yaml b/target/nextflow/bcftools/bcftools_concat/.config.vsh.yaml index 7cbf6e1f..f48b0221 100644 --- a/target/nextflow/bcftools/bcftools_concat/.config.vsh.yaml +++ b/target/nextflow/bcftools/bcftools_concat/.config.vsh.yaml @@ -335,9 +335,9 @@ build_info: output: "target/nextflow/bcftools/bcftools_concat" executable: "target/nextflow/bcftools/bcftools_concat/main.nf" viash_version: "0.9.0" - git_commit: "58fff63a79486cc6ef8154ce25968f0d33233bbd" - git_remote: "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox" - git_tag: "v0.2.0-17-g58fff63" + git_commit: "6805838a0842a37d17685a5719668d185f6c8649" + git_remote: "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-18-g6805838" package_config: name: "biobox" version: "add_trimgalore" diff --git a/target/nextflow/bcftools/bcftools_concat/main.nf b/target/nextflow/bcftools/bcftools_concat/main.nf index fe21a4c1..30172038 100644 --- a/target/nextflow/bcftools/bcftools_concat/main.nf +++ b/target/nextflow/bcftools/bcftools_concat/main.nf @@ -3207,9 +3207,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/bcftools/bcftools_concat", "viash_version" : "0.9.0", - "git_commit" : "58fff63a79486cc6ef8154ce25968f0d33233bbd", - "git_remote" : "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-17-g58fff63" + "git_commit" : "6805838a0842a37d17685a5719668d185f6c8649", + "git_remote" : "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-18-g6805838" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/bcftools/bcftools_norm/.config.vsh.yaml b/target/nextflow/bcftools/bcftools_norm/.config.vsh.yaml index 7a1ffa79..d8266344 100644 --- a/target/nextflow/bcftools/bcftools_norm/.config.vsh.yaml +++ b/target/nextflow/bcftools/bcftools_norm/.config.vsh.yaml @@ -416,9 +416,9 @@ build_info: output: "target/nextflow/bcftools/bcftools_norm" executable: "target/nextflow/bcftools/bcftools_norm/main.nf" viash_version: "0.9.0" - git_commit: "58fff63a79486cc6ef8154ce25968f0d33233bbd" - git_remote: "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox" - git_tag: "v0.2.0-17-g58fff63" + git_commit: "6805838a0842a37d17685a5719668d185f6c8649" + git_remote: "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-18-g6805838" package_config: name: "biobox" version: "add_trimgalore" diff --git a/target/nextflow/bcftools/bcftools_norm/main.nf b/target/nextflow/bcftools/bcftools_norm/main.nf index 24c1b3d2..d35eb685 100644 --- a/target/nextflow/bcftools/bcftools_norm/main.nf +++ b/target/nextflow/bcftools/bcftools_norm/main.nf @@ -3300,9 +3300,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/bcftools/bcftools_norm", "viash_version" : "0.9.0", - "git_commit" : "58fff63a79486cc6ef8154ce25968f0d33233bbd", - "git_remote" : "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-17-g58fff63" + "git_commit" : "6805838a0842a37d17685a5719668d185f6c8649", + "git_remote" : "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-18-g6805838" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/bcftools/bcftools_sort/.config.vsh.yaml b/target/nextflow/bcftools/bcftools_sort/.config.vsh.yaml index 00ebd995..0ec20b3c 100644 --- a/target/nextflow/bcftools/bcftools_sort/.config.vsh.yaml +++ b/target/nextflow/bcftools/bcftools_sort/.config.vsh.yaml @@ -185,9 +185,9 @@ build_info: output: "target/nextflow/bcftools/bcftools_sort" executable: "target/nextflow/bcftools/bcftools_sort/main.nf" viash_version: "0.9.0" - git_commit: "58fff63a79486cc6ef8154ce25968f0d33233bbd" - git_remote: "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox" - git_tag: "v0.2.0-17-g58fff63" + git_commit: "6805838a0842a37d17685a5719668d185f6c8649" + git_remote: "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-18-g6805838" package_config: name: "biobox" version: "add_trimgalore" diff --git a/target/nextflow/bcftools/bcftools_sort/main.nf b/target/nextflow/bcftools/bcftools_sort/main.nf index 821caad4..8ea90d20 100644 --- a/target/nextflow/bcftools/bcftools_sort/main.nf +++ b/target/nextflow/bcftools/bcftools_sort/main.nf @@ -3048,9 +3048,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/bcftools/bcftools_sort", "viash_version" : "0.9.0", - "git_commit" : "58fff63a79486cc6ef8154ce25968f0d33233bbd", - "git_remote" : "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-17-g58fff63" + "git_commit" : "6805838a0842a37d17685a5719668d185f6c8649", + "git_remote" : "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-18-g6805838" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/bcftools/bcftools_stats/.config.vsh.yaml b/target/nextflow/bcftools/bcftools_stats/.config.vsh.yaml index f1f7ca2f..501eab9d 100644 --- a/target/nextflow/bcftools/bcftools_stats/.config.vsh.yaml +++ b/target/nextflow/bcftools/bcftools_stats/.config.vsh.yaml @@ -458,9 +458,9 @@ build_info: output: "target/nextflow/bcftools/bcftools_stats" executable: "target/nextflow/bcftools/bcftools_stats/main.nf" viash_version: "0.9.0" - git_commit: "58fff63a79486cc6ef8154ce25968f0d33233bbd" - git_remote: "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox" - git_tag: "v0.2.0-17-g58fff63" + git_commit: "6805838a0842a37d17685a5719668d185f6c8649" + git_remote: "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-18-g6805838" package_config: name: "biobox" version: "add_trimgalore" diff --git a/target/nextflow/bcftools/bcftools_stats/main.nf b/target/nextflow/bcftools/bcftools_stats/main.nf index 957517cc..fe76d0dc 100644 --- a/target/nextflow/bcftools/bcftools_stats/main.nf +++ b/target/nextflow/bcftools/bcftools_stats/main.nf @@ -3337,9 +3337,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/bcftools/bcftools_stats", "viash_version" : "0.9.0", - "git_commit" : "58fff63a79486cc6ef8154ce25968f0d33233bbd", - "git_remote" : "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-17-g58fff63" + "git_commit" : "6805838a0842a37d17685a5719668d185f6c8649", + "git_remote" : "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-18-g6805838" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/bcl_convert/.config.vsh.yaml b/target/nextflow/bcl_convert/.config.vsh.yaml index ed937f29..d937a593 100644 --- a/target/nextflow/bcl_convert/.config.vsh.yaml +++ b/target/nextflow/bcl_convert/.config.vsh.yaml @@ -418,9 +418,9 @@ build_info: output: "target/nextflow/bcl_convert" executable: "target/nextflow/bcl_convert/main.nf" viash_version: "0.9.0" - git_commit: "58fff63a79486cc6ef8154ce25968f0d33233bbd" - git_remote: "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox" - git_tag: "v0.2.0-17-g58fff63" + git_commit: "6805838a0842a37d17685a5719668d185f6c8649" + git_remote: "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-18-g6805838" package_config: name: "biobox" version: "add_trimgalore" diff --git a/target/nextflow/bcl_convert/main.nf b/target/nextflow/bcl_convert/main.nf index 5341d524..529039b4 100644 --- a/target/nextflow/bcl_convert/main.nf +++ b/target/nextflow/bcl_convert/main.nf @@ -3329,9 +3329,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/bcl_convert", "viash_version" : "0.9.0", - "git_commit" : "58fff63a79486cc6ef8154ce25968f0d33233bbd", - "git_remote" : "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-17-g58fff63" + "git_commit" : "6805838a0842a37d17685a5719668d185f6c8649", + "git_remote" : "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-18-g6805838" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/bd_rhapsody/bd_rhapsody_make_reference/.config.vsh.yaml b/target/nextflow/bd_rhapsody/bd_rhapsody_make_reference/.config.vsh.yaml index 16ce680f..1f32daca 100644 --- a/target/nextflow/bd_rhapsody/bd_rhapsody_make_reference/.config.vsh.yaml +++ b/target/nextflow/bd_rhapsody/bd_rhapsody_make_reference/.config.vsh.yaml @@ -274,9 +274,9 @@ build_info: output: "target/nextflow/bd_rhapsody/bd_rhapsody_make_reference" executable: "target/nextflow/bd_rhapsody/bd_rhapsody_make_reference/main.nf" viash_version: "0.9.0" - git_commit: "58fff63a79486cc6ef8154ce25968f0d33233bbd" - git_remote: "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox" - git_tag: "v0.2.0-17-g58fff63" + git_commit: "6805838a0842a37d17685a5719668d185f6c8649" + git_remote: "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-18-g6805838" package_config: name: "biobox" version: "add_trimgalore" diff --git a/target/nextflow/bd_rhapsody/bd_rhapsody_make_reference/main.nf b/target/nextflow/bd_rhapsody/bd_rhapsody_make_reference/main.nf index 7cd6ff53..f9272947 100644 --- a/target/nextflow/bd_rhapsody/bd_rhapsody_make_reference/main.nf +++ b/target/nextflow/bd_rhapsody/bd_rhapsody_make_reference/main.nf @@ -3146,9 +3146,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/bd_rhapsody/bd_rhapsody_make_reference", "viash_version" : "0.9.0", - "git_commit" : "58fff63a79486cc6ef8154ce25968f0d33233bbd", - "git_remote" : "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-17-g58fff63" + "git_commit" : "6805838a0842a37d17685a5719668d185f6c8649", + "git_remote" : "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-18-g6805838" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/bd_rhapsody/bd_rhapsody_sequence_analysis/.config.vsh.yaml b/target/nextflow/bd_rhapsody/bd_rhapsody_sequence_analysis/.config.vsh.yaml index fa819e28..78324a3e 100644 --- a/target/nextflow/bd_rhapsody/bd_rhapsody_sequence_analysis/.config.vsh.yaml +++ b/target/nextflow/bd_rhapsody/bd_rhapsody_sequence_analysis/.config.vsh.yaml @@ -1115,9 +1115,9 @@ build_info: output: "target/nextflow/bd_rhapsody/bd_rhapsody_sequence_analysis" executable: "target/nextflow/bd_rhapsody/bd_rhapsody_sequence_analysis/main.nf" viash_version: "0.9.0" - git_commit: "58fff63a79486cc6ef8154ce25968f0d33233bbd" - git_remote: "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox" - git_tag: "v0.2.0-17-g58fff63" + git_commit: "6805838a0842a37d17685a5719668d185f6c8649" + git_remote: "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-18-g6805838" package_config: name: "biobox" version: "add_trimgalore" diff --git a/target/nextflow/bd_rhapsody/bd_rhapsody_sequence_analysis/main.nf b/target/nextflow/bd_rhapsody/bd_rhapsody_sequence_analysis/main.nf index 08e02a38..d8941a08 100644 --- a/target/nextflow/bd_rhapsody/bd_rhapsody_sequence_analysis/main.nf +++ b/target/nextflow/bd_rhapsody/bd_rhapsody_sequence_analysis/main.nf @@ -4193,9 +4193,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/bd_rhapsody/bd_rhapsody_sequence_analysis", "viash_version" : "0.9.0", - "git_commit" : "58fff63a79486cc6ef8154ce25968f0d33233bbd", - "git_remote" : "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-17-g58fff63" + "git_commit" : "6805838a0842a37d17685a5719668d185f6c8649", + "git_remote" : "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-18-g6805838" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/bedtools/bedtools_bamtofastq/.config.vsh.yaml b/target/nextflow/bedtools/bedtools_bamtofastq/.config.vsh.yaml index 8e62ca32..9b4987e7 100644 --- a/target/nextflow/bedtools/bedtools_bamtofastq/.config.vsh.yaml +++ b/target/nextflow/bedtools/bedtools_bamtofastq/.config.vsh.yaml @@ -187,9 +187,9 @@ build_info: output: "target/nextflow/bedtools/bedtools_bamtofastq" executable: "target/nextflow/bedtools/bedtools_bamtofastq/main.nf" viash_version: "0.9.0" - git_commit: "58fff63a79486cc6ef8154ce25968f0d33233bbd" - git_remote: "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox" - git_tag: "v0.2.0-17-g58fff63" + git_commit: "6805838a0842a37d17685a5719668d185f6c8649" + git_remote: "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-18-g6805838" package_config: name: "biobox" version: "add_trimgalore" diff --git a/target/nextflow/bedtools/bedtools_bamtofastq/main.nf b/target/nextflow/bedtools/bedtools_bamtofastq/main.nf index 1be27dea..019d81fa 100644 --- a/target/nextflow/bedtools/bedtools_bamtofastq/main.nf +++ b/target/nextflow/bedtools/bedtools_bamtofastq/main.nf @@ -3050,9 +3050,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/bedtools/bedtools_bamtofastq", "viash_version" : "0.9.0", - "git_commit" : "58fff63a79486cc6ef8154ce25968f0d33233bbd", - "git_remote" : "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-17-g58fff63" + "git_commit" : "6805838a0842a37d17685a5719668d185f6c8649", + "git_remote" : "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-18-g6805838" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/bedtools/bedtools_bed12tobed6/.config.vsh.yaml b/target/nextflow/bedtools/bedtools_bed12tobed6/.config.vsh.yaml index f10f624b..81b02d8c 100644 --- a/target/nextflow/bedtools/bedtools_bed12tobed6/.config.vsh.yaml +++ b/target/nextflow/bedtools/bedtools_bed12tobed6/.config.vsh.yaml @@ -176,9 +176,9 @@ build_info: output: "target/nextflow/bedtools/bedtools_bed12tobed6" executable: "target/nextflow/bedtools/bedtools_bed12tobed6/main.nf" viash_version: "0.9.0" - git_commit: "58fff63a79486cc6ef8154ce25968f0d33233bbd" - git_remote: "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox" - git_tag: "v0.2.0-17-g58fff63" + git_commit: "6805838a0842a37d17685a5719668d185f6c8649" + git_remote: "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-18-g6805838" package_config: name: "biobox" version: "add_trimgalore" diff --git a/target/nextflow/bedtools/bedtools_bed12tobed6/main.nf b/target/nextflow/bedtools/bedtools_bed12tobed6/main.nf index d1418a1f..598d5138 100644 --- a/target/nextflow/bedtools/bedtools_bed12tobed6/main.nf +++ b/target/nextflow/bedtools/bedtools_bed12tobed6/main.nf @@ -3035,9 +3035,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/bedtools/bedtools_bed12tobed6", "viash_version" : "0.9.0", - "git_commit" : "58fff63a79486cc6ef8154ce25968f0d33233bbd", - "git_remote" : "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-17-g58fff63" + "git_commit" : "6805838a0842a37d17685a5719668d185f6c8649", + "git_remote" : "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-18-g6805838" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/bedtools/bedtools_bedtobam/.config.vsh.yaml b/target/nextflow/bedtools/bedtools_bedtobam/.config.vsh.yaml index 94942345..9c955255 100644 --- a/target/nextflow/bedtools/bedtools_bedtobam/.config.vsh.yaml +++ b/target/nextflow/bedtools/bedtools_bedtobam/.config.vsh.yaml @@ -214,9 +214,9 @@ build_info: output: "target/nextflow/bedtools/bedtools_bedtobam" executable: "target/nextflow/bedtools/bedtools_bedtobam/main.nf" viash_version: "0.9.0" - git_commit: "58fff63a79486cc6ef8154ce25968f0d33233bbd" - git_remote: "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox" - git_tag: "v0.2.0-17-g58fff63" + git_commit: "6805838a0842a37d17685a5719668d185f6c8649" + git_remote: "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-18-g6805838" package_config: name: "biobox" version: "add_trimgalore" diff --git a/target/nextflow/bedtools/bedtools_bedtobam/main.nf b/target/nextflow/bedtools/bedtools_bedtobam/main.nf index 647c643b..3649721d 100644 --- a/target/nextflow/bedtools/bedtools_bedtobam/main.nf +++ b/target/nextflow/bedtools/bedtools_bedtobam/main.nf @@ -3083,9 +3083,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/bedtools/bedtools_bedtobam", "viash_version" : "0.9.0", - "git_commit" : "58fff63a79486cc6ef8154ce25968f0d33233bbd", - "git_remote" : "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-17-g58fff63" + "git_commit" : "6805838a0842a37d17685a5719668d185f6c8649", + "git_remote" : "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-18-g6805838" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/bedtools/bedtools_genomecov/.config.vsh.yaml b/target/nextflow/bedtools/bedtools_genomecov/.config.vsh.yaml index 81d611ae..096a4a3d 100644 --- a/target/nextflow/bedtools/bedtools_genomecov/.config.vsh.yaml +++ b/target/nextflow/bedtools/bedtools_genomecov/.config.vsh.yaml @@ -337,9 +337,9 @@ build_info: output: "target/nextflow/bedtools/bedtools_genomecov" executable: "target/nextflow/bedtools/bedtools_genomecov/main.nf" viash_version: "0.9.0" - git_commit: "58fff63a79486cc6ef8154ce25968f0d33233bbd" - git_remote: "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox" - git_tag: "v0.2.0-17-g58fff63" + git_commit: "6805838a0842a37d17685a5719668d185f6c8649" + git_remote: "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-18-g6805838" package_config: name: "biobox" version: "add_trimgalore" diff --git a/target/nextflow/bedtools/bedtools_genomecov/main.nf b/target/nextflow/bedtools/bedtools_genomecov/main.nf index 028b7e90..ac878a35 100644 --- a/target/nextflow/bedtools/bedtools_genomecov/main.nf +++ b/target/nextflow/bedtools/bedtools_genomecov/main.nf @@ -3207,9 +3207,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/bedtools/bedtools_genomecov", "viash_version" : "0.9.0", - "git_commit" : "58fff63a79486cc6ef8154ce25968f0d33233bbd", - "git_remote" : "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-17-g58fff63" + "git_commit" : "6805838a0842a37d17685a5719668d185f6c8649", + "git_remote" : "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-18-g6805838" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/bedtools/bedtools_getfasta/.config.vsh.yaml b/target/nextflow/bedtools/bedtools_getfasta/.config.vsh.yaml index 15aec081..dda3ba3e 100644 --- a/target/nextflow/bedtools/bedtools_getfasta/.config.vsh.yaml +++ b/target/nextflow/bedtools/bedtools_getfasta/.config.vsh.yaml @@ -232,9 +232,9 @@ build_info: output: "target/nextflow/bedtools/bedtools_getfasta" executable: "target/nextflow/bedtools/bedtools_getfasta/main.nf" viash_version: "0.9.0" - git_commit: "58fff63a79486cc6ef8154ce25968f0d33233bbd" - git_remote: "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox" - git_tag: "v0.2.0-17-g58fff63" + git_commit: "6805838a0842a37d17685a5719668d185f6c8649" + git_remote: "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-18-g6805838" package_config: name: "biobox" version: "add_trimgalore" diff --git a/target/nextflow/bedtools/bedtools_getfasta/main.nf b/target/nextflow/bedtools/bedtools_getfasta/main.nf index b791ce88..a2feddfb 100644 --- a/target/nextflow/bedtools/bedtools_getfasta/main.nf +++ b/target/nextflow/bedtools/bedtools_getfasta/main.nf @@ -3086,9 +3086,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/bedtools/bedtools_getfasta", "viash_version" : "0.9.0", - "git_commit" : "58fff63a79486cc6ef8154ce25968f0d33233bbd", - "git_remote" : "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-17-g58fff63" + "git_commit" : "6805838a0842a37d17685a5719668d185f6c8649", + "git_remote" : "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-18-g6805838" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/bedtools/bedtools_groupby/.config.vsh.yaml b/target/nextflow/bedtools/bedtools_groupby/.config.vsh.yaml index 155b1189..d67175fa 100644 --- a/target/nextflow/bedtools/bedtools_groupby/.config.vsh.yaml +++ b/target/nextflow/bedtools/bedtools_groupby/.config.vsh.yaml @@ -273,9 +273,9 @@ build_info: output: "target/nextflow/bedtools/bedtools_groupby" executable: "target/nextflow/bedtools/bedtools_groupby/main.nf" viash_version: "0.9.0" - git_commit: "58fff63a79486cc6ef8154ce25968f0d33233bbd" - git_remote: "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox" - git_tag: "v0.2.0-17-g58fff63" + git_commit: "6805838a0842a37d17685a5719668d185f6c8649" + git_remote: "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-18-g6805838" package_config: name: "biobox" version: "add_trimgalore" diff --git a/target/nextflow/bedtools/bedtools_groupby/main.nf b/target/nextflow/bedtools/bedtools_groupby/main.nf index 3c66a71b..0e3e628f 100644 --- a/target/nextflow/bedtools/bedtools_groupby/main.nf +++ b/target/nextflow/bedtools/bedtools_groupby/main.nf @@ -3130,9 +3130,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/bedtools/bedtools_groupby", "viash_version" : "0.9.0", - "git_commit" : "58fff63a79486cc6ef8154ce25968f0d33233bbd", - "git_remote" : "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-17-g58fff63" + "git_commit" : "6805838a0842a37d17685a5719668d185f6c8649", + "git_remote" : "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-18-g6805838" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/bedtools/bedtools_intersect/.config.vsh.yaml b/target/nextflow/bedtools/bedtools_intersect/.config.vsh.yaml index 228c5924..f95bb5e3 100644 --- a/target/nextflow/bedtools/bedtools_intersect/.config.vsh.yaml +++ b/target/nextflow/bedtools/bedtools_intersect/.config.vsh.yaml @@ -410,9 +410,9 @@ build_info: output: "target/nextflow/bedtools/bedtools_intersect" executable: "target/nextflow/bedtools/bedtools_intersect/main.nf" viash_version: "0.9.0" - git_commit: "58fff63a79486cc6ef8154ce25968f0d33233bbd" - git_remote: "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox" - git_tag: "v0.2.0-17-g58fff63" + git_commit: "6805838a0842a37d17685a5719668d185f6c8649" + git_remote: "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-18-g6805838" package_config: name: "biobox" version: "add_trimgalore" diff --git a/target/nextflow/bedtools/bedtools_intersect/main.nf b/target/nextflow/bedtools/bedtools_intersect/main.nf index f58b4f7d..63d18b4d 100644 --- a/target/nextflow/bedtools/bedtools_intersect/main.nf +++ b/target/nextflow/bedtools/bedtools_intersect/main.nf @@ -3282,9 +3282,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/bedtools/bedtools_intersect", "viash_version" : "0.9.0", - "git_commit" : "58fff63a79486cc6ef8154ce25968f0d33233bbd", - "git_remote" : "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-17-g58fff63" + "git_commit" : "6805838a0842a37d17685a5719668d185f6c8649", + "git_remote" : "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-18-g6805838" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/bedtools/bedtools_links/.config.vsh.yaml b/target/nextflow/bedtools/bedtools_links/.config.vsh.yaml index 7463f576..51717439 100644 --- a/target/nextflow/bedtools/bedtools_links/.config.vsh.yaml +++ b/target/nextflow/bedtools/bedtools_links/.config.vsh.yaml @@ -210,9 +210,9 @@ build_info: output: "target/nextflow/bedtools/bedtools_links" executable: "target/nextflow/bedtools/bedtools_links/main.nf" viash_version: "0.9.0" - git_commit: "58fff63a79486cc6ef8154ce25968f0d33233bbd" - git_remote: "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox" - git_tag: "v0.2.0-17-g58fff63" + git_commit: "6805838a0842a37d17685a5719668d185f6c8649" + git_remote: "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-18-g6805838" package_config: name: "biobox" version: "add_trimgalore" diff --git a/target/nextflow/bedtools/bedtools_links/main.nf b/target/nextflow/bedtools/bedtools_links/main.nf index 4e7dc011..995ffd7c 100644 --- a/target/nextflow/bedtools/bedtools_links/main.nf +++ b/target/nextflow/bedtools/bedtools_links/main.nf @@ -3073,9 +3073,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/bedtools/bedtools_links", "viash_version" : "0.9.0", - "git_commit" : "58fff63a79486cc6ef8154ce25968f0d33233bbd", - "git_remote" : "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-17-g58fff63" + "git_commit" : "6805838a0842a37d17685a5719668d185f6c8649", + "git_remote" : "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-18-g6805838" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/bedtools/bedtools_merge/.config.vsh.yaml b/target/nextflow/bedtools/bedtools_merge/.config.vsh.yaml index b96d6a58..5a6219a1 100644 --- a/target/nextflow/bedtools/bedtools_merge/.config.vsh.yaml +++ b/target/nextflow/bedtools/bedtools_merge/.config.vsh.yaml @@ -279,9 +279,9 @@ build_info: output: "target/nextflow/bedtools/bedtools_merge" executable: "target/nextflow/bedtools/bedtools_merge/main.nf" viash_version: "0.9.0" - git_commit: "58fff63a79486cc6ef8154ce25968f0d33233bbd" - git_remote: "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox" - git_tag: "v0.2.0-17-g58fff63" + git_commit: "6805838a0842a37d17685a5719668d185f6c8649" + git_remote: "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-18-g6805838" package_config: name: "biobox" version: "add_trimgalore" diff --git a/target/nextflow/bedtools/bedtools_merge/main.nf b/target/nextflow/bedtools/bedtools_merge/main.nf index cc96c03d..68542cfc 100644 --- a/target/nextflow/bedtools/bedtools_merge/main.nf +++ b/target/nextflow/bedtools/bedtools_merge/main.nf @@ -3134,9 +3134,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/bedtools/bedtools_merge", "viash_version" : "0.9.0", - "git_commit" : "58fff63a79486cc6ef8154ce25968f0d33233bbd", - "git_remote" : "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-17-g58fff63" + "git_commit" : "6805838a0842a37d17685a5719668d185f6c8649", + "git_remote" : "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-18-g6805838" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/bedtools/bedtools_sort/.config.vsh.yaml b/target/nextflow/bedtools/bedtools_sort/.config.vsh.yaml index cc5f7431..defb956d 100644 --- a/target/nextflow/bedtools/bedtools_sort/.config.vsh.yaml +++ b/target/nextflow/bedtools/bedtools_sort/.config.vsh.yaml @@ -222,9 +222,9 @@ build_info: output: "target/nextflow/bedtools/bedtools_sort" executable: "target/nextflow/bedtools/bedtools_sort/main.nf" viash_version: "0.9.0" - git_commit: "58fff63a79486cc6ef8154ce25968f0d33233bbd" - git_remote: "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox" - git_tag: "v0.2.0-17-g58fff63" + git_commit: "6805838a0842a37d17685a5719668d185f6c8649" + git_remote: "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-18-g6805838" package_config: name: "biobox" version: "add_trimgalore" diff --git a/target/nextflow/bedtools/bedtools_sort/main.nf b/target/nextflow/bedtools/bedtools_sort/main.nf index 073ecf06..ceb4ecbd 100644 --- a/target/nextflow/bedtools/bedtools_sort/main.nf +++ b/target/nextflow/bedtools/bedtools_sort/main.nf @@ -3092,9 +3092,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/bedtools/bedtools_sort", "viash_version" : "0.9.0", - "git_commit" : "58fff63a79486cc6ef8154ce25968f0d33233bbd", - "git_remote" : "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-17-g58fff63" + "git_commit" : "6805838a0842a37d17685a5719668d185f6c8649", + "git_remote" : "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-18-g6805838" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/busco/busco_download_datasets/.config.vsh.yaml b/target/nextflow/busco/busco_download_datasets/.config.vsh.yaml index 17a879aa..8d1684fb 100644 --- a/target/nextflow/busco/busco_download_datasets/.config.vsh.yaml +++ b/target/nextflow/busco/busco_download_datasets/.config.vsh.yaml @@ -158,9 +158,9 @@ build_info: output: "target/nextflow/busco/busco_download_datasets" executable: "target/nextflow/busco/busco_download_datasets/main.nf" viash_version: "0.9.0" - git_commit: "58fff63a79486cc6ef8154ce25968f0d33233bbd" - git_remote: "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox" - git_tag: "v0.2.0-17-g58fff63" + git_commit: "6805838a0842a37d17685a5719668d185f6c8649" + git_remote: "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-18-g6805838" package_config: name: "biobox" version: "add_trimgalore" diff --git a/target/nextflow/busco/busco_download_datasets/main.nf b/target/nextflow/busco/busco_download_datasets/main.nf index 858532aa..a79743be 100644 --- a/target/nextflow/busco/busco_download_datasets/main.nf +++ b/target/nextflow/busco/busco_download_datasets/main.nf @@ -3011,9 +3011,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/busco/busco_download_datasets", "viash_version" : "0.9.0", - "git_commit" : "58fff63a79486cc6ef8154ce25968f0d33233bbd", - "git_remote" : "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-17-g58fff63" + "git_commit" : "6805838a0842a37d17685a5719668d185f6c8649", + "git_remote" : "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-18-g6805838" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/busco/busco_list_datasets/.config.vsh.yaml b/target/nextflow/busco/busco_list_datasets/.config.vsh.yaml index 027e5330..3fd98f46 100644 --- a/target/nextflow/busco/busco_list_datasets/.config.vsh.yaml +++ b/target/nextflow/busco/busco_list_datasets/.config.vsh.yaml @@ -145,9 +145,9 @@ build_info: output: "target/nextflow/busco/busco_list_datasets" executable: "target/nextflow/busco/busco_list_datasets/main.nf" viash_version: "0.9.0" - git_commit: "58fff63a79486cc6ef8154ce25968f0d33233bbd" - git_remote: "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox" - git_tag: "v0.2.0-17-g58fff63" + git_commit: "6805838a0842a37d17685a5719668d185f6c8649" + git_remote: "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-18-g6805838" package_config: name: "biobox" version: "add_trimgalore" diff --git a/target/nextflow/busco/busco_list_datasets/main.nf b/target/nextflow/busco/busco_list_datasets/main.nf index f2398a1e..79ffc207 100644 --- a/target/nextflow/busco/busco_list_datasets/main.nf +++ b/target/nextflow/busco/busco_list_datasets/main.nf @@ -2997,9 +2997,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/busco/busco_list_datasets", "viash_version" : "0.9.0", - "git_commit" : "58fff63a79486cc6ef8154ce25968f0d33233bbd", - "git_remote" : "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-17-g58fff63" + "git_commit" : "6805838a0842a37d17685a5719668d185f6c8649", + "git_remote" : "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-18-g6805838" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/busco/busco_run/.config.vsh.yaml b/target/nextflow/busco/busco_run/.config.vsh.yaml index 56f28c03..ffaee0f1 100644 --- a/target/nextflow/busco/busco_run/.config.vsh.yaml +++ b/target/nextflow/busco/busco_run/.config.vsh.yaml @@ -423,9 +423,9 @@ build_info: output: "target/nextflow/busco/busco_run" executable: "target/nextflow/busco/busco_run/main.nf" viash_version: "0.9.0" - git_commit: "58fff63a79486cc6ef8154ce25968f0d33233bbd" - git_remote: "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox" - git_tag: "v0.2.0-17-g58fff63" + git_commit: "6805838a0842a37d17685a5719668d185f6c8649" + git_remote: "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-18-g6805838" package_config: name: "biobox" version: "add_trimgalore" diff --git a/target/nextflow/busco/busco_run/main.nf b/target/nextflow/busco/busco_run/main.nf index 206432c6..494ef778 100644 --- a/target/nextflow/busco/busco_run/main.nf +++ b/target/nextflow/busco/busco_run/main.nf @@ -3309,9 +3309,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/busco/busco_run", "viash_version" : "0.9.0", - "git_commit" : "58fff63a79486cc6ef8154ce25968f0d33233bbd", - "git_remote" : "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-17-g58fff63" + "git_commit" : "6805838a0842a37d17685a5719668d185f6c8649", + "git_remote" : "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-18-g6805838" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/cutadapt/.config.vsh.yaml b/target/nextflow/cutadapt/.config.vsh.yaml index 16317e3e..73f45137 100644 --- a/target/nextflow/cutadapt/.config.vsh.yaml +++ b/target/nextflow/cutadapt/.config.vsh.yaml @@ -740,9 +740,9 @@ build_info: output: "target/nextflow/cutadapt" executable: "target/nextflow/cutadapt/main.nf" viash_version: "0.9.0" - git_commit: "58fff63a79486cc6ef8154ce25968f0d33233bbd" - git_remote: "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox" - git_tag: "v0.2.0-17-g58fff63" + git_commit: "6805838a0842a37d17685a5719668d185f6c8649" + git_remote: "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-18-g6805838" package_config: name: "biobox" version: "add_trimgalore" diff --git a/target/nextflow/cutadapt/main.nf b/target/nextflow/cutadapt/main.nf index ed41662c..d1265b86 100644 --- a/target/nextflow/cutadapt/main.nf +++ b/target/nextflow/cutadapt/main.nf @@ -3619,9 +3619,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/cutadapt", "viash_version" : "0.9.0", - "git_commit" : "58fff63a79486cc6ef8154ce25968f0d33233bbd", - "git_remote" : "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-17-g58fff63" + "git_commit" : "6805838a0842a37d17685a5719668d185f6c8649", + "git_remote" : "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-18-g6805838" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/falco/.config.vsh.yaml b/target/nextflow/falco/.config.vsh.yaml index ea42b861..5a363725 100644 --- a/target/nextflow/falco/.config.vsh.yaml +++ b/target/nextflow/falco/.config.vsh.yaml @@ -317,9 +317,9 @@ build_info: output: "target/nextflow/falco" executable: "target/nextflow/falco/main.nf" viash_version: "0.9.0" - git_commit: "58fff63a79486cc6ef8154ce25968f0d33233bbd" - git_remote: "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox" - git_tag: "v0.2.0-17-g58fff63" + git_commit: "6805838a0842a37d17685a5719668d185f6c8649" + git_remote: "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-18-g6805838" package_config: name: "biobox" version: "add_trimgalore" diff --git a/target/nextflow/falco/main.nf b/target/nextflow/falco/main.nf index f232d937..da654840 100644 --- a/target/nextflow/falco/main.nf +++ b/target/nextflow/falco/main.nf @@ -3170,9 +3170,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/falco", "viash_version" : "0.9.0", - "git_commit" : "58fff63a79486cc6ef8154ce25968f0d33233bbd", - "git_remote" : "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-17-g58fff63" + "git_commit" : "6805838a0842a37d17685a5719668d185f6c8649", + "git_remote" : "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-18-g6805838" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/fastp/.config.vsh.yaml b/target/nextflow/fastp/.config.vsh.yaml index 374a2565..c1ef026e 100644 --- a/target/nextflow/fastp/.config.vsh.yaml +++ b/target/nextflow/fastp/.config.vsh.yaml @@ -1083,9 +1083,9 @@ build_info: output: "target/nextflow/fastp" executable: "target/nextflow/fastp/main.nf" viash_version: "0.9.0" - git_commit: "58fff63a79486cc6ef8154ce25968f0d33233bbd" - git_remote: "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox" - git_tag: "v0.2.0-17-g58fff63" + git_commit: "6805838a0842a37d17685a5719668d185f6c8649" + git_remote: "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-18-g6805838" package_config: name: "biobox" version: "add_trimgalore" diff --git a/target/nextflow/fastp/main.nf b/target/nextflow/fastp/main.nf index c2900c7c..9671a149 100644 --- a/target/nextflow/fastp/main.nf +++ b/target/nextflow/fastp/main.nf @@ -4023,9 +4023,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/fastp", "viash_version" : "0.9.0", - "git_commit" : "58fff63a79486cc6ef8154ce25968f0d33233bbd", - "git_remote" : "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-17-g58fff63" + "git_commit" : "6805838a0842a37d17685a5719668d185f6c8649", + "git_remote" : "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-18-g6805838" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/fastqc/.config.vsh.yaml b/target/nextflow/fastqc/.config.vsh.yaml index 93cf695d..a5b89eb6 100644 --- a/target/nextflow/fastqc/.config.vsh.yaml +++ b/target/nextflow/fastqc/.config.vsh.yaml @@ -340,9 +340,9 @@ build_info: output: "target/nextflow/fastqc" executable: "target/nextflow/fastqc/main.nf" viash_version: "0.9.0" - git_commit: "58fff63a79486cc6ef8154ce25968f0d33233bbd" - git_remote: "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox" - git_tag: "v0.2.0-17-g58fff63" + git_commit: "6805838a0842a37d17685a5719668d185f6c8649" + git_remote: "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-18-g6805838" package_config: name: "biobox" version: "add_trimgalore" diff --git a/target/nextflow/fastqc/main.nf b/target/nextflow/fastqc/main.nf index c21f8170..87b71960 100644 --- a/target/nextflow/fastqc/main.nf +++ b/target/nextflow/fastqc/main.nf @@ -3182,9 +3182,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/fastqc", "viash_version" : "0.9.0", - "git_commit" : "58fff63a79486cc6ef8154ce25968f0d33233bbd", - "git_remote" : "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-17-g58fff63" + "git_commit" : "6805838a0842a37d17685a5719668d185f6c8649", + "git_remote" : "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-18-g6805838" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/featurecounts/.config.vsh.yaml b/target/nextflow/featurecounts/.config.vsh.yaml index bccf6f0b..e7d69f6c 100644 --- a/target/nextflow/featurecounts/.config.vsh.yaml +++ b/target/nextflow/featurecounts/.config.vsh.yaml @@ -645,9 +645,9 @@ build_info: output: "target/nextflow/featurecounts" executable: "target/nextflow/featurecounts/main.nf" viash_version: "0.9.0" - git_commit: "58fff63a79486cc6ef8154ce25968f0d33233bbd" - git_remote: "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox" - git_tag: "v0.2.0-17-g58fff63" + git_commit: "6805838a0842a37d17685a5719668d185f6c8649" + git_remote: "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-18-g6805838" package_config: name: "biobox" version: "add_trimgalore" diff --git a/target/nextflow/featurecounts/main.nf b/target/nextflow/featurecounts/main.nf index a996df39..99fe5682 100644 --- a/target/nextflow/featurecounts/main.nf +++ b/target/nextflow/featurecounts/main.nf @@ -3549,9 +3549,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/featurecounts", "viash_version" : "0.9.0", - "git_commit" : "58fff63a79486cc6ef8154ce25968f0d33233bbd", - "git_remote" : "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-17-g58fff63" + "git_commit" : "6805838a0842a37d17685a5719668d185f6c8649", + "git_remote" : "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-18-g6805838" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/fq_subsample/.config.vsh.yaml b/target/nextflow/fq_subsample/.config.vsh.yaml index 33dda9e9..140410bf 100644 --- a/target/nextflow/fq_subsample/.config.vsh.yaml +++ b/target/nextflow/fq_subsample/.config.vsh.yaml @@ -190,9 +190,9 @@ build_info: output: "target/nextflow/fq_subsample" executable: "target/nextflow/fq_subsample/main.nf" viash_version: "0.9.0" - git_commit: "58fff63a79486cc6ef8154ce25968f0d33233bbd" - git_remote: "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox" - git_tag: "v0.2.0-17-g58fff63" + git_commit: "6805838a0842a37d17685a5719668d185f6c8649" + git_remote: "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-18-g6805838" package_config: name: "biobox" version: "add_trimgalore" diff --git a/target/nextflow/fq_subsample/main.nf b/target/nextflow/fq_subsample/main.nf index 7b25407d..c549e2fc 100644 --- a/target/nextflow/fq_subsample/main.nf +++ b/target/nextflow/fq_subsample/main.nf @@ -3032,9 +3032,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/fq_subsample", "viash_version" : "0.9.0", - "git_commit" : "58fff63a79486cc6ef8154ce25968f0d33233bbd", - "git_remote" : "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-17-g58fff63" + "git_commit" : "6805838a0842a37d17685a5719668d185f6c8649", + "git_remote" : "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-18-g6805838" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/gffread/.config.vsh.yaml b/target/nextflow/gffread/.config.vsh.yaml index c8f5eef7..46a236e6 100644 --- a/target/nextflow/gffread/.config.vsh.yaml +++ b/target/nextflow/gffread/.config.vsh.yaml @@ -685,9 +685,9 @@ build_info: output: "target/nextflow/gffread" executable: "target/nextflow/gffread/main.nf" viash_version: "0.9.0" - git_commit: "58fff63a79486cc6ef8154ce25968f0d33233bbd" - git_remote: "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox" - git_tag: "v0.2.0-17-g58fff63" + git_commit: "6805838a0842a37d17685a5719668d185f6c8649" + git_remote: "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-18-g6805838" package_config: name: "biobox" version: "add_trimgalore" diff --git a/target/nextflow/gffread/main.nf b/target/nextflow/gffread/main.nf index 22778836..ac160c1d 100644 --- a/target/nextflow/gffread/main.nf +++ b/target/nextflow/gffread/main.nf @@ -3606,9 +3606,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/gffread", "viash_version" : "0.9.0", - "git_commit" : "58fff63a79486cc6ef8154ce25968f0d33233bbd", - "git_remote" : "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-17-g58fff63" + "git_commit" : "6805838a0842a37d17685a5719668d185f6c8649", + "git_remote" : "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-18-g6805838" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/kallisto/kallisto_index/.config.vsh.yaml b/target/nextflow/kallisto/kallisto_index/.config.vsh.yaml index ad7e84d7..ea329614 100644 --- a/target/nextflow/kallisto/kallisto_index/.config.vsh.yaml +++ b/target/nextflow/kallisto/kallisto_index/.config.vsh.yaml @@ -218,9 +218,9 @@ build_info: output: "target/nextflow/kallisto/kallisto_index" executable: "target/nextflow/kallisto/kallisto_index/main.nf" viash_version: "0.9.0" - git_commit: "58fff63a79486cc6ef8154ce25968f0d33233bbd" - git_remote: "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox" - git_tag: "v0.2.0-17-g58fff63" + git_commit: "6805838a0842a37d17685a5719668d185f6c8649" + git_remote: "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-18-g6805838" package_config: name: "biobox" version: "add_trimgalore" diff --git a/target/nextflow/kallisto/kallisto_index/main.nf b/target/nextflow/kallisto/kallisto_index/main.nf index 15e481d9..f3a6b13e 100644 --- a/target/nextflow/kallisto/kallisto_index/main.nf +++ b/target/nextflow/kallisto/kallisto_index/main.nf @@ -3071,9 +3071,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/kallisto/kallisto_index", "viash_version" : "0.9.0", - "git_commit" : "58fff63a79486cc6ef8154ce25968f0d33233bbd", - "git_remote" : "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-17-g58fff63" + "git_commit" : "6805838a0842a37d17685a5719668d185f6c8649", + "git_remote" : "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-18-g6805838" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/kallisto/kallisto_quant/.config.vsh.yaml b/target/nextflow/kallisto/kallisto_quant/.config.vsh.yaml index df8a7c51..f651b69c 100644 --- a/target/nextflow/kallisto/kallisto_quant/.config.vsh.yaml +++ b/target/nextflow/kallisto/kallisto_quant/.config.vsh.yaml @@ -234,9 +234,9 @@ build_info: output: "target/nextflow/kallisto/kallisto_quant" executable: "target/nextflow/kallisto/kallisto_quant/main.nf" viash_version: "0.9.0" - git_commit: "58fff63a79486cc6ef8154ce25968f0d33233bbd" - git_remote: "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox" - git_tag: "v0.2.0-17-g58fff63" + git_commit: "6805838a0842a37d17685a5719668d185f6c8649" + git_remote: "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-18-g6805838" package_config: name: "biobox" version: "add_trimgalore" diff --git a/target/nextflow/kallisto/kallisto_quant/main.nf b/target/nextflow/kallisto/kallisto_quant/main.nf index 538ed34b..52653946 100644 --- a/target/nextflow/kallisto/kallisto_quant/main.nf +++ b/target/nextflow/kallisto/kallisto_quant/main.nf @@ -3092,9 +3092,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/kallisto/kallisto_quant", "viash_version" : "0.9.0", - "git_commit" : "58fff63a79486cc6ef8154ce25968f0d33233bbd", - "git_remote" : "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-17-g58fff63" + "git_commit" : "6805838a0842a37d17685a5719668d185f6c8649", + "git_remote" : "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-18-g6805838" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/lofreq/lofreq_call/.config.vsh.yaml b/target/nextflow/lofreq/lofreq_call/.config.vsh.yaml index 41fb77df..eeaeda43 100644 --- a/target/nextflow/lofreq/lofreq_call/.config.vsh.yaml +++ b/target/nextflow/lofreq/lofreq_call/.config.vsh.yaml @@ -507,9 +507,9 @@ build_info: output: "target/nextflow/lofreq/lofreq_call" executable: "target/nextflow/lofreq/lofreq_call/main.nf" viash_version: "0.9.0" - git_commit: "58fff63a79486cc6ef8154ce25968f0d33233bbd" - git_remote: "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox" - git_tag: "v0.2.0-17-g58fff63" + git_commit: "6805838a0842a37d17685a5719668d185f6c8649" + git_remote: "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-18-g6805838" package_config: name: "biobox" version: "add_trimgalore" diff --git a/target/nextflow/lofreq/lofreq_call/main.nf b/target/nextflow/lofreq/lofreq_call/main.nf index a733b18b..e50ae447 100644 --- a/target/nextflow/lofreq/lofreq_call/main.nf +++ b/target/nextflow/lofreq/lofreq_call/main.nf @@ -3414,9 +3414,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/lofreq/lofreq_call", "viash_version" : "0.9.0", - "git_commit" : "58fff63a79486cc6ef8154ce25968f0d33233bbd", - "git_remote" : "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-17-g58fff63" + "git_commit" : "6805838a0842a37d17685a5719668d185f6c8649", + "git_remote" : "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-18-g6805838" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/lofreq/lofreq_indelqual/.config.vsh.yaml b/target/nextflow/lofreq/lofreq_indelqual/.config.vsh.yaml index 97495d14..9fcec370 100644 --- a/target/nextflow/lofreq/lofreq_indelqual/.config.vsh.yaml +++ b/target/nextflow/lofreq/lofreq_indelqual/.config.vsh.yaml @@ -215,9 +215,9 @@ build_info: output: "target/nextflow/lofreq/lofreq_indelqual" executable: "target/nextflow/lofreq/lofreq_indelqual/main.nf" viash_version: "0.9.0" - git_commit: "58fff63a79486cc6ef8154ce25968f0d33233bbd" - git_remote: "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox" - git_tag: "v0.2.0-17-g58fff63" + git_commit: "6805838a0842a37d17685a5719668d185f6c8649" + git_remote: "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-18-g6805838" package_config: name: "biobox" version: "add_trimgalore" diff --git a/target/nextflow/lofreq/lofreq_indelqual/main.nf b/target/nextflow/lofreq/lofreq_indelqual/main.nf index a505b391..e4c8726d 100644 --- a/target/nextflow/lofreq/lofreq_indelqual/main.nf +++ b/target/nextflow/lofreq/lofreq_indelqual/main.nf @@ -3077,9 +3077,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/lofreq/lofreq_indelqual", "viash_version" : "0.9.0", - "git_commit" : "58fff63a79486cc6ef8154ce25968f0d33233bbd", - "git_remote" : "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-17-g58fff63" + "git_commit" : "6805838a0842a37d17685a5719668d185f6c8649", + "git_remote" : "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-18-g6805838" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/multiqc/.config.vsh.yaml b/target/nextflow/multiqc/.config.vsh.yaml index 39bc7dd5..3aab43a1 100644 --- a/target/nextflow/multiqc/.config.vsh.yaml +++ b/target/nextflow/multiqc/.config.vsh.yaml @@ -456,9 +456,9 @@ build_info: output: "target/nextflow/multiqc" executable: "target/nextflow/multiqc/main.nf" viash_version: "0.9.0" - git_commit: "58fff63a79486cc6ef8154ce25968f0d33233bbd" - git_remote: "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox" - git_tag: "v0.2.0-17-g58fff63" + git_commit: "6805838a0842a37d17685a5719668d185f6c8649" + git_remote: "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-18-g6805838" package_config: name: "biobox" version: "add_trimgalore" diff --git a/target/nextflow/multiqc/main.nf b/target/nextflow/multiqc/main.nf index 98672762..74d8d4c4 100644 --- a/target/nextflow/multiqc/main.nf +++ b/target/nextflow/multiqc/main.nf @@ -3366,9 +3366,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/multiqc", "viash_version" : "0.9.0", - "git_commit" : "58fff63a79486cc6ef8154ce25968f0d33233bbd", - "git_remote" : "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-17-g58fff63" + "git_commit" : "6805838a0842a37d17685a5719668d185f6c8649", + "git_remote" : "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-18-g6805838" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/pear/.config.vsh.yaml b/target/nextflow/pear/.config.vsh.yaml index 2e91586f..c3bc9359 100644 --- a/target/nextflow/pear/.config.vsh.yaml +++ b/target/nextflow/pear/.config.vsh.yaml @@ -398,9 +398,9 @@ build_info: output: "target/nextflow/pear" executable: "target/nextflow/pear/main.nf" viash_version: "0.9.0" - git_commit: "58fff63a79486cc6ef8154ce25968f0d33233bbd" - git_remote: "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox" - git_tag: "v0.2.0-17-g58fff63" + git_commit: "6805838a0842a37d17685a5719668d185f6c8649" + git_remote: "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-18-g6805838" package_config: name: "biobox" version: "add_trimgalore" diff --git a/target/nextflow/pear/main.nf b/target/nextflow/pear/main.nf index 8c50d46e..2263c43e 100644 --- a/target/nextflow/pear/main.nf +++ b/target/nextflow/pear/main.nf @@ -3259,9 +3259,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/pear", "viash_version" : "0.9.0", - "git_commit" : "58fff63a79486cc6ef8154ce25968f0d33233bbd", - "git_remote" : "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-17-g58fff63" + "git_commit" : "6805838a0842a37d17685a5719668d185f6c8649", + "git_remote" : "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-18-g6805838" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/qualimap/qualimap_rnaseq/.config.vsh.yaml b/target/nextflow/qualimap/qualimap_rnaseq/.config.vsh.yaml index 42c1919c..ca9399a5 100644 --- a/target/nextflow/qualimap/qualimap_rnaseq/.config.vsh.yaml +++ b/target/nextflow/qualimap/qualimap_rnaseq/.config.vsh.yaml @@ -264,9 +264,9 @@ build_info: output: "target/nextflow/qualimap/qualimap_rnaseq" executable: "target/nextflow/qualimap/qualimap_rnaseq/main.nf" viash_version: "0.9.0" - git_commit: "58fff63a79486cc6ef8154ce25968f0d33233bbd" - git_remote: "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox" - git_tag: "v0.2.0-17-g58fff63" + git_commit: "6805838a0842a37d17685a5719668d185f6c8649" + git_remote: "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-18-g6805838" package_config: name: "biobox" version: "add_trimgalore" diff --git a/target/nextflow/qualimap/qualimap_rnaseq/main.nf b/target/nextflow/qualimap/qualimap_rnaseq/main.nf index ad14cdf1..d07fd280 100644 --- a/target/nextflow/qualimap/qualimap_rnaseq/main.nf +++ b/target/nextflow/qualimap/qualimap_rnaseq/main.nf @@ -3129,9 +3129,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/qualimap/qualimap_rnaseq", "viash_version" : "0.9.0", - "git_commit" : "58fff63a79486cc6ef8154ce25968f0d33233bbd", - "git_remote" : "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-17-g58fff63" + "git_commit" : "6805838a0842a37d17685a5719668d185f6c8649", + "git_remote" : "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-18-g6805838" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/rsem/rsem_calculate_expression/.config.vsh.yaml b/target/nextflow/rsem/rsem_calculate_expression/.config.vsh.yaml index 44132a11..ae6abd16 100644 --- a/target/nextflow/rsem/rsem_calculate_expression/.config.vsh.yaml +++ b/target/nextflow/rsem/rsem_calculate_expression/.config.vsh.yaml @@ -852,9 +852,9 @@ build_info: output: "target/nextflow/rsem/rsem_calculate_expression" executable: "target/nextflow/rsem/rsem_calculate_expression/main.nf" viash_version: "0.9.0" - git_commit: "58fff63a79486cc6ef8154ce25968f0d33233bbd" - git_remote: "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox" - git_tag: "v0.2.0-17-g58fff63" + git_commit: "6805838a0842a37d17685a5719668d185f6c8649" + git_remote: "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-18-g6805838" package_config: name: "biobox" version: "add_trimgalore" diff --git a/target/nextflow/rsem/rsem_calculate_expression/main.nf b/target/nextflow/rsem/rsem_calculate_expression/main.nf index a6385abe..32d6efc7 100644 --- a/target/nextflow/rsem/rsem_calculate_expression/main.nf +++ b/target/nextflow/rsem/rsem_calculate_expression/main.nf @@ -3661,9 +3661,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/rsem/rsem_calculate_expression", "viash_version" : "0.9.0", - "git_commit" : "58fff63a79486cc6ef8154ce25968f0d33233bbd", - "git_remote" : "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-17-g58fff63" + "git_commit" : "6805838a0842a37d17685a5719668d185f6c8649", + "git_remote" : "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-18-g6805838" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/rsem/rsem_prepare_reference/.config.vsh.yaml b/target/nextflow/rsem/rsem_prepare_reference/.config.vsh.yaml index 4802756e..2f8e17ef 100644 --- a/target/nextflow/rsem/rsem_prepare_reference/.config.vsh.yaml +++ b/target/nextflow/rsem/rsem_prepare_reference/.config.vsh.yaml @@ -416,9 +416,9 @@ build_info: output: "target/nextflow/rsem/rsem_prepare_reference" executable: "target/nextflow/rsem/rsem_prepare_reference/main.nf" viash_version: "0.9.0" - git_commit: "58fff63a79486cc6ef8154ce25968f0d33233bbd" - git_remote: "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox" - git_tag: "v0.2.0-17-g58fff63" + git_commit: "6805838a0842a37d17685a5719668d185f6c8649" + git_remote: "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-18-g6805838" package_config: name: "biobox" version: "add_trimgalore" diff --git a/target/nextflow/rsem/rsem_prepare_reference/main.nf b/target/nextflow/rsem/rsem_prepare_reference/main.nf index 2b2293cf..312c96e8 100644 --- a/target/nextflow/rsem/rsem_prepare_reference/main.nf +++ b/target/nextflow/rsem/rsem_prepare_reference/main.nf @@ -3245,9 +3245,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/rsem/rsem_prepare_reference", "viash_version" : "0.9.0", - "git_commit" : "58fff63a79486cc6ef8154ce25968f0d33233bbd", - "git_remote" : "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-17-g58fff63" + "git_commit" : "6805838a0842a37d17685a5719668d185f6c8649", + "git_remote" : "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-18-g6805838" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/salmon/salmon_index/.config.vsh.yaml b/target/nextflow/salmon/salmon_index/.config.vsh.yaml index cdd767fc..c4dd0d6b 100644 --- a/target/nextflow/salmon/salmon_index/.config.vsh.yaml +++ b/target/nextflow/salmon/salmon_index/.config.vsh.yaml @@ -277,9 +277,9 @@ build_info: output: "target/nextflow/salmon/salmon_index" executable: "target/nextflow/salmon/salmon_index/main.nf" viash_version: "0.9.0" - git_commit: "58fff63a79486cc6ef8154ce25968f0d33233bbd" - git_remote: "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox" - git_tag: "v0.2.0-17-g58fff63" + git_commit: "6805838a0842a37d17685a5719668d185f6c8649" + git_remote: "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-18-g6805838" package_config: name: "biobox" version: "add_trimgalore" diff --git a/target/nextflow/salmon/salmon_index/main.nf b/target/nextflow/salmon/salmon_index/main.nf index 1b9de817..1a481219 100644 --- a/target/nextflow/salmon/salmon_index/main.nf +++ b/target/nextflow/salmon/salmon_index/main.nf @@ -3129,9 +3129,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/salmon/salmon_index", "viash_version" : "0.9.0", - "git_commit" : "58fff63a79486cc6ef8154ce25968f0d33233bbd", - "git_remote" : "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-17-g58fff63" + "git_commit" : "6805838a0842a37d17685a5719668d185f6c8649", + "git_remote" : "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-18-g6805838" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/salmon/salmon_quant/.config.vsh.yaml b/target/nextflow/salmon/salmon_quant/.config.vsh.yaml index ac1e9963..2ba87649 100644 --- a/target/nextflow/salmon/salmon_quant/.config.vsh.yaml +++ b/target/nextflow/salmon/salmon_quant/.config.vsh.yaml @@ -1173,9 +1173,9 @@ build_info: output: "target/nextflow/salmon/salmon_quant" executable: "target/nextflow/salmon/salmon_quant/main.nf" viash_version: "0.9.0" - git_commit: "58fff63a79486cc6ef8154ce25968f0d33233bbd" - git_remote: "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox" - git_tag: "v0.2.0-17-g58fff63" + git_commit: "6805838a0842a37d17685a5719668d185f6c8649" + git_remote: "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-18-g6805838" package_config: name: "biobox" version: "add_trimgalore" diff --git a/target/nextflow/salmon/salmon_quant/main.nf b/target/nextflow/salmon/salmon_quant/main.nf index 63594e02..a55926a9 100644 --- a/target/nextflow/salmon/salmon_quant/main.nf +++ b/target/nextflow/salmon/salmon_quant/main.nf @@ -3964,9 +3964,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/salmon/salmon_quant", "viash_version" : "0.9.0", - "git_commit" : "58fff63a79486cc6ef8154ce25968f0d33233bbd", - "git_remote" : "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-17-g58fff63" + "git_commit" : "6805838a0842a37d17685a5719668d185f6c8649", + "git_remote" : "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-18-g6805838" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/samtools/samtools_collate/.config.vsh.yaml b/target/nextflow/samtools/samtools_collate/.config.vsh.yaml index ba6253b1..3be6f8b7 100644 --- a/target/nextflow/samtools/samtools_collate/.config.vsh.yaml +++ b/target/nextflow/samtools/samtools_collate/.config.vsh.yaml @@ -264,9 +264,9 @@ build_info: output: "target/nextflow/samtools/samtools_collate" executable: "target/nextflow/samtools/samtools_collate/main.nf" viash_version: "0.9.0" - git_commit: "58fff63a79486cc6ef8154ce25968f0d33233bbd" - git_remote: "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox" - git_tag: "v0.2.0-17-g58fff63" + git_commit: "6805838a0842a37d17685a5719668d185f6c8649" + git_remote: "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-18-g6805838" package_config: name: "biobox" version: "add_trimgalore" diff --git a/target/nextflow/samtools/samtools_collate/main.nf b/target/nextflow/samtools/samtools_collate/main.nf index 9c9e4b3b..ad26bd9f 100644 --- a/target/nextflow/samtools/samtools_collate/main.nf +++ b/target/nextflow/samtools/samtools_collate/main.nf @@ -3140,9 +3140,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/samtools/samtools_collate", "viash_version" : "0.9.0", - "git_commit" : "58fff63a79486cc6ef8154ce25968f0d33233bbd", - "git_remote" : "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-17-g58fff63" + "git_commit" : "6805838a0842a37d17685a5719668d185f6c8649", + "git_remote" : "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-18-g6805838" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/samtools/samtools_faidx/.config.vsh.yaml b/target/nextflow/samtools/samtools_faidx/.config.vsh.yaml index 65dcdd73..16fc1baf 100644 --- a/target/nextflow/samtools/samtools_faidx/.config.vsh.yaml +++ b/target/nextflow/samtools/samtools_faidx/.config.vsh.yaml @@ -243,9 +243,9 @@ build_info: output: "target/nextflow/samtools/samtools_faidx" executable: "target/nextflow/samtools/samtools_faidx/main.nf" viash_version: "0.9.0" - git_commit: "58fff63a79486cc6ef8154ce25968f0d33233bbd" - git_remote: "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox" - git_tag: "v0.2.0-17-g58fff63" + git_commit: "6805838a0842a37d17685a5719668d185f6c8649" + git_remote: "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-18-g6805838" package_config: name: "biobox" version: "add_trimgalore" diff --git a/target/nextflow/samtools/samtools_faidx/main.nf b/target/nextflow/samtools/samtools_faidx/main.nf index bf9f3bbc..83716e4f 100644 --- a/target/nextflow/samtools/samtools_faidx/main.nf +++ b/target/nextflow/samtools/samtools_faidx/main.nf @@ -3112,9 +3112,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/samtools/samtools_faidx", "viash_version" : "0.9.0", - "git_commit" : "58fff63a79486cc6ef8154ce25968f0d33233bbd", - "git_remote" : "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-17-g58fff63" + "git_commit" : "6805838a0842a37d17685a5719668d185f6c8649", + "git_remote" : "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-18-g6805838" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/samtools/samtools_fasta/.config.vsh.yaml b/target/nextflow/samtools/samtools_fasta/.config.vsh.yaml index a63ee97f..f64ea140 100644 --- a/target/nextflow/samtools/samtools_fasta/.config.vsh.yaml +++ b/target/nextflow/samtools/samtools_fasta/.config.vsh.yaml @@ -433,9 +433,9 @@ build_info: output: "target/nextflow/samtools/samtools_fasta" executable: "target/nextflow/samtools/samtools_fasta/main.nf" viash_version: "0.9.0" - git_commit: "58fff63a79486cc6ef8154ce25968f0d33233bbd" - git_remote: "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox" - git_tag: "v0.2.0-17-g58fff63" + git_commit: "6805838a0842a37d17685a5719668d185f6c8649" + git_remote: "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-18-g6805838" package_config: name: "biobox" version: "add_trimgalore" diff --git a/target/nextflow/samtools/samtools_fasta/main.nf b/target/nextflow/samtools/samtools_fasta/main.nf index d7cdf9dc..453638bc 100644 --- a/target/nextflow/samtools/samtools_fasta/main.nf +++ b/target/nextflow/samtools/samtools_fasta/main.nf @@ -3304,9 +3304,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/samtools/samtools_fasta", "viash_version" : "0.9.0", - "git_commit" : "58fff63a79486cc6ef8154ce25968f0d33233bbd", - "git_remote" : "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-17-g58fff63" + "git_commit" : "6805838a0842a37d17685a5719668d185f6c8649", + "git_remote" : "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-18-g6805838" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/samtools/samtools_fastq/.config.vsh.yaml b/target/nextflow/samtools/samtools_fastq/.config.vsh.yaml index 5de95317..a06cbdc0 100644 --- a/target/nextflow/samtools/samtools_fastq/.config.vsh.yaml +++ b/target/nextflow/samtools/samtools_fastq/.config.vsh.yaml @@ -433,9 +433,9 @@ build_info: output: "target/nextflow/samtools/samtools_fastq" executable: "target/nextflow/samtools/samtools_fastq/main.nf" viash_version: "0.9.0" - git_commit: "58fff63a79486cc6ef8154ce25968f0d33233bbd" - git_remote: "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox" - git_tag: "v0.2.0-17-g58fff63" + git_commit: "6805838a0842a37d17685a5719668d185f6c8649" + git_remote: "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-18-g6805838" package_config: name: "biobox" version: "add_trimgalore" diff --git a/target/nextflow/samtools/samtools_fastq/main.nf b/target/nextflow/samtools/samtools_fastq/main.nf index e64aaa89..b8a3ba24 100644 --- a/target/nextflow/samtools/samtools_fastq/main.nf +++ b/target/nextflow/samtools/samtools_fastq/main.nf @@ -3304,9 +3304,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/samtools/samtools_fastq", "viash_version" : "0.9.0", - "git_commit" : "58fff63a79486cc6ef8154ce25968f0d33233bbd", - "git_remote" : "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-17-g58fff63" + "git_commit" : "6805838a0842a37d17685a5719668d185f6c8649", + "git_remote" : "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-18-g6805838" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/samtools/samtools_flagstat/.config.vsh.yaml b/target/nextflow/samtools/samtools_flagstat/.config.vsh.yaml index 921b03da..12a34a2b 100644 --- a/target/nextflow/samtools/samtools_flagstat/.config.vsh.yaml +++ b/target/nextflow/samtools/samtools_flagstat/.config.vsh.yaml @@ -173,9 +173,9 @@ build_info: output: "target/nextflow/samtools/samtools_flagstat" executable: "target/nextflow/samtools/samtools_flagstat/main.nf" viash_version: "0.9.0" - git_commit: "58fff63a79486cc6ef8154ce25968f0d33233bbd" - git_remote: "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox" - git_tag: "v0.2.0-17-g58fff63" + git_commit: "6805838a0842a37d17685a5719668d185f6c8649" + git_remote: "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-18-g6805838" package_config: name: "biobox" version: "add_trimgalore" diff --git a/target/nextflow/samtools/samtools_flagstat/main.nf b/target/nextflow/samtools/samtools_flagstat/main.nf index 9da1e89f..98e38eab 100644 --- a/target/nextflow/samtools/samtools_flagstat/main.nf +++ b/target/nextflow/samtools/samtools_flagstat/main.nf @@ -3028,9 +3028,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/samtools/samtools_flagstat", "viash_version" : "0.9.0", - "git_commit" : "58fff63a79486cc6ef8154ce25968f0d33233bbd", - "git_remote" : "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-17-g58fff63" + "git_commit" : "6805838a0842a37d17685a5719668d185f6c8649", + "git_remote" : "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-18-g6805838" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/samtools/samtools_idxstats/.config.vsh.yaml b/target/nextflow/samtools/samtools_idxstats/.config.vsh.yaml index 4cdc53ad..ac3df6f8 100644 --- a/target/nextflow/samtools/samtools_idxstats/.config.vsh.yaml +++ b/target/nextflow/samtools/samtools_idxstats/.config.vsh.yaml @@ -183,9 +183,9 @@ build_info: output: "target/nextflow/samtools/samtools_idxstats" executable: "target/nextflow/samtools/samtools_idxstats/main.nf" viash_version: "0.9.0" - git_commit: "58fff63a79486cc6ef8154ce25968f0d33233bbd" - git_remote: "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox" - git_tag: "v0.2.0-17-g58fff63" + git_commit: "6805838a0842a37d17685a5719668d185f6c8649" + git_remote: "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-18-g6805838" package_config: name: "biobox" version: "add_trimgalore" diff --git a/target/nextflow/samtools/samtools_idxstats/main.nf b/target/nextflow/samtools/samtools_idxstats/main.nf index 233505b0..92193118 100644 --- a/target/nextflow/samtools/samtools_idxstats/main.nf +++ b/target/nextflow/samtools/samtools_idxstats/main.nf @@ -3040,9 +3040,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/samtools/samtools_idxstats", "viash_version" : "0.9.0", - "git_commit" : "58fff63a79486cc6ef8154ce25968f0d33233bbd", - "git_remote" : "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-17-g58fff63" + "git_commit" : "6805838a0842a37d17685a5719668d185f6c8649", + "git_remote" : "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-18-g6805838" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/samtools/samtools_index/.config.vsh.yaml b/target/nextflow/samtools/samtools_index/.config.vsh.yaml index d22043ef..aea0cf01 100644 --- a/target/nextflow/samtools/samtools_index/.config.vsh.yaml +++ b/target/nextflow/samtools/samtools_index/.config.vsh.yaml @@ -189,9 +189,9 @@ build_info: output: "target/nextflow/samtools/samtools_index" executable: "target/nextflow/samtools/samtools_index/main.nf" viash_version: "0.9.0" - git_commit: "58fff63a79486cc6ef8154ce25968f0d33233bbd" - git_remote: "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox" - git_tag: "v0.2.0-17-g58fff63" + git_commit: "6805838a0842a37d17685a5719668d185f6c8649" + git_remote: "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-18-g6805838" package_config: name: "biobox" version: "add_trimgalore" diff --git a/target/nextflow/samtools/samtools_index/main.nf b/target/nextflow/samtools/samtools_index/main.nf index eb71845f..390a296c 100644 --- a/target/nextflow/samtools/samtools_index/main.nf +++ b/target/nextflow/samtools/samtools_index/main.nf @@ -3053,9 +3053,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/samtools/samtools_index", "viash_version" : "0.9.0", - "git_commit" : "58fff63a79486cc6ef8154ce25968f0d33233bbd", - "git_remote" : "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-17-g58fff63" + "git_commit" : "6805838a0842a37d17685a5719668d185f6c8649", + "git_remote" : "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-18-g6805838" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/samtools/samtools_sort/.config.vsh.yaml b/target/nextflow/samtools/samtools_sort/.config.vsh.yaml index 1f1c8e7a..133d6d08 100644 --- a/target/nextflow/samtools/samtools_sort/.config.vsh.yaml +++ b/target/nextflow/samtools/samtools_sort/.config.vsh.yaml @@ -332,9 +332,9 @@ build_info: output: "target/nextflow/samtools/samtools_sort" executable: "target/nextflow/samtools/samtools_sort/main.nf" viash_version: "0.9.0" - git_commit: "58fff63a79486cc6ef8154ce25968f0d33233bbd" - git_remote: "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox" - git_tag: "v0.2.0-17-g58fff63" + git_commit: "6805838a0842a37d17685a5719668d185f6c8649" + git_remote: "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-18-g6805838" package_config: name: "biobox" version: "add_trimgalore" diff --git a/target/nextflow/samtools/samtools_sort/main.nf b/target/nextflow/samtools/samtools_sort/main.nf index 206c5f6b..7a7d64dc 100644 --- a/target/nextflow/samtools/samtools_sort/main.nf +++ b/target/nextflow/samtools/samtools_sort/main.nf @@ -3225,9 +3225,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/samtools/samtools_sort", "viash_version" : "0.9.0", - "git_commit" : "58fff63a79486cc6ef8154ce25968f0d33233bbd", - "git_remote" : "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-17-g58fff63" + "git_commit" : "6805838a0842a37d17685a5719668d185f6c8649", + "git_remote" : "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-18-g6805838" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/samtools/samtools_stats/.config.vsh.yaml b/target/nextflow/samtools/samtools_stats/.config.vsh.yaml index fe183c43..b8321915 100644 --- a/target/nextflow/samtools/samtools_stats/.config.vsh.yaml +++ b/target/nextflow/samtools/samtools_stats/.config.vsh.yaml @@ -401,9 +401,9 @@ build_info: output: "target/nextflow/samtools/samtools_stats" executable: "target/nextflow/samtools/samtools_stats/main.nf" viash_version: "0.9.0" - git_commit: "58fff63a79486cc6ef8154ce25968f0d33233bbd" - git_remote: "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox" - git_tag: "v0.2.0-17-g58fff63" + git_commit: "6805838a0842a37d17685a5719668d185f6c8649" + git_remote: "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-18-g6805838" package_config: name: "biobox" version: "add_trimgalore" diff --git a/target/nextflow/samtools/samtools_stats/main.nf b/target/nextflow/samtools/samtools_stats/main.nf index 9d6bf1b8..aecbecde 100644 --- a/target/nextflow/samtools/samtools_stats/main.nf +++ b/target/nextflow/samtools/samtools_stats/main.nf @@ -3295,9 +3295,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/samtools/samtools_stats", "viash_version" : "0.9.0", - "git_commit" : "58fff63a79486cc6ef8154ce25968f0d33233bbd", - "git_remote" : "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-17-g58fff63" + "git_commit" : "6805838a0842a37d17685a5719668d185f6c8649", + "git_remote" : "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-18-g6805838" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/samtools/samtools_view/.config.vsh.yaml b/target/nextflow/samtools/samtools_view/.config.vsh.yaml index a43c4b88..b7ffc7fc 100644 --- a/target/nextflow/samtools/samtools_view/.config.vsh.yaml +++ b/target/nextflow/samtools/samtools_view/.config.vsh.yaml @@ -665,9 +665,9 @@ build_info: output: "target/nextflow/samtools/samtools_view" executable: "target/nextflow/samtools/samtools_view/main.nf" viash_version: "0.9.0" - git_commit: "58fff63a79486cc6ef8154ce25968f0d33233bbd" - git_remote: "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox" - git_tag: "v0.2.0-17-g58fff63" + git_commit: "6805838a0842a37d17685a5719668d185f6c8649" + git_remote: "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-18-g6805838" package_config: name: "biobox" version: "add_trimgalore" diff --git a/target/nextflow/samtools/samtools_view/main.nf b/target/nextflow/samtools/samtools_view/main.nf index 5c2e2692..584ec872 100644 --- a/target/nextflow/samtools/samtools_view/main.nf +++ b/target/nextflow/samtools/samtools_view/main.nf @@ -3476,9 +3476,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/samtools/samtools_view", "viash_version" : "0.9.0", - "git_commit" : "58fff63a79486cc6ef8154ce25968f0d33233bbd", - "git_remote" : "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-17-g58fff63" + "git_commit" : "6805838a0842a37d17685a5719668d185f6c8649", + "git_remote" : "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-18-g6805838" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/seqtk/seqtk_sample/.config.vsh.yaml b/target/nextflow/seqtk/seqtk_sample/.config.vsh.yaml index b933c3cb..5c36a0f5 100644 --- a/target/nextflow/seqtk/seqtk_sample/.config.vsh.yaml +++ b/target/nextflow/seqtk/seqtk_sample/.config.vsh.yaml @@ -173,9 +173,9 @@ build_info: output: "target/nextflow/seqtk/seqtk_sample" executable: "target/nextflow/seqtk/seqtk_sample/main.nf" viash_version: "0.9.0" - git_commit: "58fff63a79486cc6ef8154ce25968f0d33233bbd" - git_remote: "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox" - git_tag: "v0.2.0-17-g58fff63" + git_commit: "6805838a0842a37d17685a5719668d185f6c8649" + git_remote: "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-18-g6805838" package_config: name: "biobox" version: "add_trimgalore" diff --git a/target/nextflow/seqtk/seqtk_sample/main.nf b/target/nextflow/seqtk/seqtk_sample/main.nf index 541bf6bc..11ed194a 100644 --- a/target/nextflow/seqtk/seqtk_sample/main.nf +++ b/target/nextflow/seqtk/seqtk_sample/main.nf @@ -3030,9 +3030,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/seqtk/seqtk_sample", "viash_version" : "0.9.0", - "git_commit" : "58fff63a79486cc6ef8154ce25968f0d33233bbd", - "git_remote" : "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-17-g58fff63" + "git_commit" : "6805838a0842a37d17685a5719668d185f6c8649", + "git_remote" : "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-18-g6805838" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/seqtk/seqtk_subseq/.config.vsh.yaml b/target/nextflow/seqtk/seqtk_subseq/.config.vsh.yaml index 3622c7d6..bd759d69 100644 --- a/target/nextflow/seqtk/seqtk_subseq/.config.vsh.yaml +++ b/target/nextflow/seqtk/seqtk_subseq/.config.vsh.yaml @@ -196,9 +196,9 @@ build_info: output: "target/nextflow/seqtk/seqtk_subseq" executable: "target/nextflow/seqtk/seqtk_subseq/main.nf" viash_version: "0.9.0" - git_commit: "58fff63a79486cc6ef8154ce25968f0d33233bbd" - git_remote: "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox" - git_tag: "v0.2.0-17-g58fff63" + git_commit: "6805838a0842a37d17685a5719668d185f6c8649" + git_remote: "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-18-g6805838" package_config: name: "biobox" version: "add_trimgalore" diff --git a/target/nextflow/seqtk/seqtk_subseq/main.nf b/target/nextflow/seqtk/seqtk_subseq/main.nf index 6f3f90e5..af3d5ee8 100644 --- a/target/nextflow/seqtk/seqtk_subseq/main.nf +++ b/target/nextflow/seqtk/seqtk_subseq/main.nf @@ -3060,9 +3060,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/seqtk/seqtk_subseq", "viash_version" : "0.9.0", - "git_commit" : "58fff63a79486cc6ef8154ce25968f0d33233bbd", - "git_remote" : "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-17-g58fff63" + "git_commit" : "6805838a0842a37d17685a5719668d185f6c8649", + "git_remote" : "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-18-g6805838" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/sortmerna/.config.vsh.yaml b/target/nextflow/sortmerna/.config.vsh.yaml index 9999098e..aa408a63 100644 --- a/target/nextflow/sortmerna/.config.vsh.yaml +++ b/target/nextflow/sortmerna/.config.vsh.yaml @@ -591,9 +591,9 @@ build_info: output: "target/nextflow/sortmerna" executable: "target/nextflow/sortmerna/main.nf" viash_version: "0.9.0" - git_commit: "58fff63a79486cc6ef8154ce25968f0d33233bbd" - git_remote: "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox" - git_tag: "v0.2.0-17-g58fff63" + git_commit: "6805838a0842a37d17685a5719668d185f6c8649" + git_remote: "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-18-g6805838" package_config: name: "biobox" version: "add_trimgalore" diff --git a/target/nextflow/sortmerna/main.nf b/target/nextflow/sortmerna/main.nf index 242e6028..011d8a9f 100644 --- a/target/nextflow/sortmerna/main.nf +++ b/target/nextflow/sortmerna/main.nf @@ -3456,9 +3456,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/sortmerna", "viash_version" : "0.9.0", - "git_commit" : "58fff63a79486cc6ef8154ce25968f0d33233bbd", - "git_remote" : "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-17-g58fff63" + "git_commit" : "6805838a0842a37d17685a5719668d185f6c8649", + "git_remote" : "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-18-g6805838" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/star/star_align_reads/.config.vsh.yaml b/target/nextflow/star/star_align_reads/.config.vsh.yaml index 87a482ef..8fc04e3b 100644 --- a/target/nextflow/star/star_align_reads/.config.vsh.yaml +++ b/target/nextflow/star/star_align_reads/.config.vsh.yaml @@ -2663,9 +2663,9 @@ build_info: output: "target/nextflow/star/star_align_reads" executable: "target/nextflow/star/star_align_reads/main.nf" viash_version: "0.9.0" - git_commit: "58fff63a79486cc6ef8154ce25968f0d33233bbd" - git_remote: "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox" - git_tag: "v0.2.0-17-g58fff63" + git_commit: "6805838a0842a37d17685a5719668d185f6c8649" + git_remote: "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-18-g6805838" package_config: name: "biobox" version: "add_trimgalore" diff --git a/target/nextflow/star/star_align_reads/main.nf b/target/nextflow/star/star_align_reads/main.nf index 740b9e85..67dd5a2f 100644 --- a/target/nextflow/star/star_align_reads/main.nf +++ b/target/nextflow/star/star_align_reads/main.nf @@ -5943,9 +5943,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/star/star_align_reads", "viash_version" : "0.9.0", - "git_commit" : "58fff63a79486cc6ef8154ce25968f0d33233bbd", - "git_remote" : "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-17-g58fff63" + "git_commit" : "6805838a0842a37d17685a5719668d185f6c8649", + "git_remote" : "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-18-g6805838" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/star/star_genome_generate/.config.vsh.yaml b/target/nextflow/star/star_genome_generate/.config.vsh.yaml index 120088e1..2d5e6881 100644 --- a/target/nextflow/star/star_genome_generate/.config.vsh.yaml +++ b/target/nextflow/star/star_genome_generate/.config.vsh.yaml @@ -333,9 +333,9 @@ build_info: output: "target/nextflow/star/star_genome_generate" executable: "target/nextflow/star/star_genome_generate/main.nf" viash_version: "0.9.0" - git_commit: "58fff63a79486cc6ef8154ce25968f0d33233bbd" - git_remote: "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox" - git_tag: "v0.2.0-17-g58fff63" + git_commit: "6805838a0842a37d17685a5719668d185f6c8649" + git_remote: "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-18-g6805838" package_config: name: "biobox" version: "add_trimgalore" diff --git a/target/nextflow/star/star_genome_generate/main.nf b/target/nextflow/star/star_genome_generate/main.nf index 022e825d..357207f5 100644 --- a/target/nextflow/star/star_genome_generate/main.nf +++ b/target/nextflow/star/star_genome_generate/main.nf @@ -3195,9 +3195,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/star/star_genome_generate", "viash_version" : "0.9.0", - "git_commit" : "58fff63a79486cc6ef8154ce25968f0d33233bbd", - "git_remote" : "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-17-g58fff63" + "git_commit" : "6805838a0842a37d17685a5719668d185f6c8649", + "git_remote" : "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-18-g6805838" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/trimgalore/.config.vsh.yaml b/target/nextflow/trimgalore/.config.vsh.yaml index 385580a0..204a7faa 100644 --- a/target/nextflow/trimgalore/.config.vsh.yaml +++ b/target/nextflow/trimgalore/.config.vsh.yaml @@ -770,9 +770,9 @@ build_info: output: "target/nextflow/trimgalore" executable: "target/nextflow/trimgalore/main.nf" viash_version: "0.9.0" - git_commit: "58fff63a79486cc6ef8154ce25968f0d33233bbd" - git_remote: "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox" - git_tag: "v0.2.0-17-g58fff63" + git_commit: "6805838a0842a37d17685a5719668d185f6c8649" + git_remote: "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-18-g6805838" package_config: name: "biobox" version: "add_trimgalore" diff --git a/target/nextflow/trimgalore/main.nf b/target/nextflow/trimgalore/main.nf index 4ffed7f6..0c4238d4 100644 --- a/target/nextflow/trimgalore/main.nf +++ b/target/nextflow/trimgalore/main.nf @@ -3560,9 +3560,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/trimgalore", "viash_version" : "0.9.0", - "git_commit" : "58fff63a79486cc6ef8154ce25968f0d33233bbd", - "git_remote" : "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-17-g58fff63" + "git_commit" : "6805838a0842a37d17685a5719668d185f6c8649", + "git_remote" : "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-18-g6805838" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/umi_tools/umi_tools_dedup/.config.vsh.yaml b/target/nextflow/umi_tools/umi_tools_dedup/.config.vsh.yaml index 01690d48..cc11ddd4 100644 --- a/target/nextflow/umi_tools/umi_tools_dedup/.config.vsh.yaml +++ b/target/nextflow/umi_tools/umi_tools_dedup/.config.vsh.yaml @@ -611,9 +611,9 @@ build_info: output: "target/nextflow/umi_tools/umi_tools_dedup" executable: "target/nextflow/umi_tools/umi_tools_dedup/main.nf" viash_version: "0.9.0" - git_commit: "58fff63a79486cc6ef8154ce25968f0d33233bbd" - git_remote: "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox" - git_tag: "v0.2.0-17-g58fff63" + git_commit: "6805838a0842a37d17685a5719668d185f6c8649" + git_remote: "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-18-g6805838" package_config: name: "biobox" version: "add_trimgalore" diff --git a/target/nextflow/umi_tools/umi_tools_dedup/main.nf b/target/nextflow/umi_tools/umi_tools_dedup/main.nf index 8a6e61a5..949eeae6 100644 --- a/target/nextflow/umi_tools/umi_tools_dedup/main.nf +++ b/target/nextflow/umi_tools/umi_tools_dedup/main.nf @@ -3487,9 +3487,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/umi_tools/umi_tools_dedup", "viash_version" : "0.9.0", - "git_commit" : "58fff63a79486cc6ef8154ce25968f0d33233bbd", - "git_remote" : "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-17-g58fff63" + "git_commit" : "6805838a0842a37d17685a5719668d185f6c8649", + "git_remote" : "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-18-g6805838" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/umi_tools/umi_tools_extract/.config.vsh.yaml b/target/nextflow/umi_tools/umi_tools_extract/.config.vsh.yaml index 85c8ee51..ab145de1 100644 --- a/target/nextflow/umi_tools/umi_tools_extract/.config.vsh.yaml +++ b/target/nextflow/umi_tools/umi_tools_extract/.config.vsh.yaml @@ -449,9 +449,9 @@ build_info: output: "target/nextflow/umi_tools/umi_tools_extract" executable: "target/nextflow/umi_tools/umi_tools_extract/main.nf" viash_version: "0.9.0" - git_commit: "58fff63a79486cc6ef8154ce25968f0d33233bbd" - git_remote: "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox" - git_tag: "v0.2.0-17-g58fff63" + git_commit: "6805838a0842a37d17685a5719668d185f6c8649" + git_remote: "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-18-g6805838" package_config: name: "biobox" version: "add_trimgalore" diff --git a/target/nextflow/umi_tools/umi_tools_extract/main.nf b/target/nextflow/umi_tools/umi_tools_extract/main.nf index 716615b1..36e5ef69 100644 --- a/target/nextflow/umi_tools/umi_tools_extract/main.nf +++ b/target/nextflow/umi_tools/umi_tools_extract/main.nf @@ -3316,9 +3316,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/umi_tools/umi_tools_extract", "viash_version" : "0.9.0", - "git_commit" : "58fff63a79486cc6ef8154ce25968f0d33233bbd", - "git_remote" : "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-17-g58fff63" + "git_commit" : "6805838a0842a37d17685a5719668d185f6c8649", + "git_remote" : "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-18-g6805838" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/umi_tools/umi_tools_prepareforrsem/.config.vsh.yaml b/target/nextflow/umi_tools/umi_tools_prepareforrsem/.config.vsh.yaml index 5bc66bbd..d5735ff7 100644 --- a/target/nextflow/umi_tools/umi_tools_prepareforrsem/.config.vsh.yaml +++ b/target/nextflow/umi_tools/umi_tools_prepareforrsem/.config.vsh.yaml @@ -256,9 +256,9 @@ build_info: output: "target/nextflow/umi_tools/umi_tools_prepareforrsem" executable: "target/nextflow/umi_tools/umi_tools_prepareforrsem/main.nf" viash_version: "0.9.0" - git_commit: "58fff63a79486cc6ef8154ce25968f0d33233bbd" - git_remote: "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox" - git_tag: "v0.2.0-17-g58fff63" + git_commit: "6805838a0842a37d17685a5719668d185f6c8649" + git_remote: "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox" + git_tag: "v0.2.0-18-g6805838" package_config: name: "biobox" version: "add_trimgalore" diff --git a/target/nextflow/umi_tools/umi_tools_prepareforrsem/main.nf b/target/nextflow/umi_tools/umi_tools_prepareforrsem/main.nf index 6be8eef1..7029384e 100644 --- a/target/nextflow/umi_tools/umi_tools_prepareforrsem/main.nf +++ b/target/nextflow/umi_tools/umi_tools_prepareforrsem/main.nf @@ -3121,9 +3121,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/umi_tools/umi_tools_prepareforrsem", "viash_version" : "0.9.0", - "git_commit" : "58fff63a79486cc6ef8154ce25968f0d33233bbd", - "git_remote" : "https://x-access-token:ghs_bkyUSr3AiRiiBMZsG4a0cVtxksNgov2SKmdL@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-17-g58fff63" + "git_commit" : "6805838a0842a37d17685a5719668d185f6c8649", + "git_remote" : "https://x-access-token:ghs_5YaP8kC4DAbmYW9yAudqYPqGcGTIon1uolUc@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-18-g6805838" }, "package_config" : { "name" : "biobox",