From adf9159264adf6649085e56a7c5eb6893d83ac71 Mon Sep 17 00:00:00 2001 From: CI Date: Thu, 3 Oct 2024 13:08:17 +0000 Subject: [PATCH] Build branch main with version main (0a0edca) Build pipeline: viash-hub.biobox.main-77vkl Source commit: https://github.com/viash-hub/biobox/commit/0a0edcacb5368517d249210022363bd9265f1bf5 Source message: Cutadapt: fix non-functional action parameter (#161) * Cutadapt: fix non-functional action parameter * Add PR number --- CHANGELOG.md | 4 ++++ src/cutadapt/script.sh | 2 +- .../executable/agat/agat_convert_bed2gff/.config.vsh.yaml | 6 +++--- .../agat/agat_convert_bed2gff/agat_convert_bed2gff | 4 ++-- .../agat/agat_convert_embl2gff/.config.vsh.yaml | 6 +++--- .../agat/agat_convert_embl2gff/agat_convert_embl2gff | 4 ++-- .../agat/agat_convert_genscan2gff/.config.vsh.yaml | 6 +++--- .../agat_convert_genscan2gff/agat_convert_genscan2gff | 4 ++-- .../agat/agat_convert_sp_gff2gtf/.config.vsh.yaml | 6 +++--- .../agat/agat_convert_sp_gff2gtf/agat_convert_sp_gff2gtf | 4 ++-- .../agat/agat_convert_sp_gff2tsv/.config.vsh.yaml | 6 +++--- .../agat/agat_convert_sp_gff2tsv/agat_convert_sp_gff2tsv | 4 ++-- .../agat/agat_convert_sp_gxf2gxf/.config.vsh.yaml | 6 +++--- .../agat/agat_convert_sp_gxf2gxf/agat_convert_sp_gxf2gxf | 4 ++-- target/executable/arriba/.config.vsh.yaml | 6 +++--- target/executable/arriba/arriba | 4 ++-- .../bcftools/bcftools_annotate/.config.vsh.yaml | 6 +++--- .../bcftools/bcftools_annotate/bcftools_annotate | 4 ++-- .../executable/bcftools/bcftools_concat/.config.vsh.yaml | 6 +++--- .../executable/bcftools/bcftools_concat/bcftools_concat | 4 ++-- target/executable/bcftools/bcftools_norm/.config.vsh.yaml | 6 +++--- target/executable/bcftools/bcftools_norm/bcftools_norm | 4 ++-- target/executable/bcftools/bcftools_sort/.config.vsh.yaml | 6 +++--- target/executable/bcftools/bcftools_sort/bcftools_sort | 4 ++-- .../executable/bcftools/bcftools_stats/.config.vsh.yaml | 6 +++--- target/executable/bcftools/bcftools_stats/bcftools_stats | 4 ++-- target/executable/bcl_convert/.config.vsh.yaml | 6 +++--- target/executable/bcl_convert/bcl_convert | 4 ++-- .../bd_rhapsody_make_reference/.config.vsh.yaml | 6 +++--- .../bd_rhapsody_make_reference/bd_rhapsody_make_reference | 4 ++-- .../bd_rhapsody_sequence_analysis/.config.vsh.yaml | 6 +++--- .../bd_rhapsody_sequence_analysis | 4 ++-- .../bedtools/bedtools_bamtofastq/.config.vsh.yaml | 6 +++--- .../bedtools/bedtools_bamtofastq/bedtools_bamtofastq | 4 ++-- .../bedtools/bedtools_bed12tobed6/.config.vsh.yaml | 6 +++--- .../bedtools/bedtools_bed12tobed6/bedtools_bed12tobed6 | 4 ++-- .../bedtools/bedtools_bedtobam/.config.vsh.yaml | 6 +++--- .../bedtools/bedtools_bedtobam/bedtools_bedtobam | 4 ++-- .../bedtools/bedtools_genomecov/.config.vsh.yaml | 6 +++--- .../bedtools/bedtools_genomecov/bedtools_genomecov | 4 ++-- .../bedtools/bedtools_getfasta/.config.vsh.yaml | 6 +++--- .../bedtools/bedtools_getfasta/bedtools_getfasta | 4 ++-- .../executable/bedtools/bedtools_groupby/.config.vsh.yaml | 6 +++--- .../executable/bedtools/bedtools_groupby/bedtools_groupby | 4 ++-- .../bedtools/bedtools_intersect/.config.vsh.yaml | 6 +++--- .../bedtools/bedtools_intersect/bedtools_intersect | 4 ++-- .../executable/bedtools/bedtools_links/.config.vsh.yaml | 6 +++--- target/executable/bedtools/bedtools_links/bedtools_links | 4 ++-- .../executable/bedtools/bedtools_merge/.config.vsh.yaml | 6 +++--- target/executable/bedtools/bedtools_merge/bedtools_merge | 4 ++-- target/executable/bedtools/bedtools_sort/.config.vsh.yaml | 6 +++--- target/executable/bedtools/bedtools_sort/bedtools_sort | 4 ++-- .../busco/busco_download_datasets/.config.vsh.yaml | 6 +++--- .../busco/busco_download_datasets/busco_download_datasets | 4 ++-- .../executable/busco/busco_list_datasets/.config.vsh.yaml | 6 +++--- .../busco/busco_list_datasets/busco_list_datasets | 4 ++-- target/executable/busco/busco_run/.config.vsh.yaml | 6 +++--- target/executable/busco/busco_run/busco_run | 4 ++-- target/executable/cutadapt/.config.vsh.yaml | 6 +++--- target/executable/cutadapt/cutadapt | 6 +++--- target/executable/falco/.config.vsh.yaml | 6 +++--- target/executable/falco/falco | 4 ++-- target/executable/fastp/.config.vsh.yaml | 6 +++--- target/executable/fastp/fastp | 4 ++-- target/executable/fastqc/.config.vsh.yaml | 6 +++--- target/executable/fastqc/fastqc | 4 ++-- target/executable/featurecounts/.config.vsh.yaml | 6 +++--- target/executable/featurecounts/featurecounts | 4 ++-- target/executable/fq_subsample/.config.vsh.yaml | 6 +++--- target/executable/fq_subsample/fq_subsample | 4 ++-- target/executable/gffread/.config.vsh.yaml | 6 +++--- target/executable/gffread/gffread | 4 ++-- .../executable/kallisto/kallisto_index/.config.vsh.yaml | 6 +++--- target/executable/kallisto/kallisto_index/kallisto_index | 4 ++-- .../executable/kallisto/kallisto_quant/.config.vsh.yaml | 6 +++--- target/executable/kallisto/kallisto_quant/kallisto_quant | 4 ++-- target/executable/lofreq/lofreq_call/.config.vsh.yaml | 6 +++--- target/executable/lofreq/lofreq_call/lofreq_call | 4 ++-- .../executable/lofreq/lofreq_indelqual/.config.vsh.yaml | 6 +++--- .../executable/lofreq/lofreq_indelqual/lofreq_indelqual | 4 ++-- target/executable/multiqc/.config.vsh.yaml | 6 +++--- target/executable/multiqc/multiqc | 4 ++-- target/executable/pear/.config.vsh.yaml | 6 +++--- target/executable/pear/pear | 4 ++-- .../executable/qualimap/qualimap_rnaseq/.config.vsh.yaml | 6 +++--- .../executable/qualimap/qualimap_rnaseq/qualimap_rnaseq | 4 ++-- .../rsem/rsem_calculate_expression/.config.vsh.yaml | 6 +++--- .../rsem_calculate_expression/rsem_calculate_expression | 4 ++-- .../rsem/rsem_prepare_reference/.config.vsh.yaml | 6 +++--- .../rsem/rsem_prepare_reference/rsem_prepare_reference | 4 ++-- target/executable/salmon/salmon_index/.config.vsh.yaml | 6 +++--- target/executable/salmon/salmon_index/salmon_index | 4 ++-- target/executable/salmon/salmon_quant/.config.vsh.yaml | 6 +++--- target/executable/salmon/salmon_quant/salmon_quant | 4 ++-- .../executable/samtools/samtools_collate/.config.vsh.yaml | 6 +++--- .../executable/samtools/samtools_collate/samtools_collate | 4 ++-- .../executable/samtools/samtools_faidx/.config.vsh.yaml | 6 +++--- target/executable/samtools/samtools_faidx/samtools_faidx | 4 ++-- .../executable/samtools/samtools_fasta/.config.vsh.yaml | 6 +++--- target/executable/samtools/samtools_fasta/samtools_fasta | 4 ++-- .../executable/samtools/samtools_fastq/.config.vsh.yaml | 6 +++--- target/executable/samtools/samtools_fastq/samtools_fastq | 4 ++-- .../samtools/samtools_flagstat/.config.vsh.yaml | 6 +++--- .../samtools/samtools_flagstat/samtools_flagstat | 4 ++-- .../samtools/samtools_idxstats/.config.vsh.yaml | 6 +++--- .../samtools/samtools_idxstats/samtools_idxstats | 4 ++-- .../executable/samtools/samtools_index/.config.vsh.yaml | 6 +++--- target/executable/samtools/samtools_index/samtools_index | 4 ++-- target/executable/samtools/samtools_sort/.config.vsh.yaml | 6 +++--- target/executable/samtools/samtools_sort/samtools_sort | 4 ++-- .../executable/samtools/samtools_stats/.config.vsh.yaml | 6 +++--- target/executable/samtools/samtools_stats/samtools_stats | 4 ++-- target/executable/samtools/samtools_view/.config.vsh.yaml | 6 +++--- target/executable/samtools/samtools_view/samtools_view | 4 ++-- target/executable/seqtk/seqtk_sample/.config.vsh.yaml | 6 +++--- target/executable/seqtk/seqtk_sample/seqtk_sample | 4 ++-- target/executable/seqtk/seqtk_subseq/.config.vsh.yaml | 6 +++--- target/executable/seqtk/seqtk_subseq/seqtk_subseq | 4 ++-- target/executable/sortmerna/.config.vsh.yaml | 6 +++--- target/executable/sortmerna/sortmerna | 4 ++-- target/executable/star/star_align_reads/.config.vsh.yaml | 6 +++--- target/executable/star/star_align_reads/star_align_reads | 4 ++-- .../executable/star/star_genome_generate/.config.vsh.yaml | 6 +++--- .../star/star_genome_generate/star_genome_generate | 4 ++-- target/executable/trimgalore/.config.vsh.yaml | 6 +++--- target/executable/trimgalore/trimgalore | 4 ++-- .../executable/umi_tools/umi_tools_dedup/.config.vsh.yaml | 6 +++--- .../executable/umi_tools/umi_tools_dedup/umi_tools_dedup | 4 ++-- .../umi_tools/umi_tools_extract/.config.vsh.yaml | 6 +++--- .../umi_tools/umi_tools_extract/umi_tools_extract | 4 ++-- .../umi_tools/umi_tools_prepareforrsem/.config.vsh.yaml | 6 +++--- .../umi_tools_prepareforrsem/umi_tools_prepareforrsem | 4 ++-- .../nextflow/agat/agat_convert_bed2gff/.config.vsh.yaml | 6 +++--- target/nextflow/agat/agat_convert_bed2gff/main.nf | 6 +++--- .../nextflow/agat/agat_convert_embl2gff/.config.vsh.yaml | 6 +++--- target/nextflow/agat/agat_convert_embl2gff/main.nf | 6 +++--- .../agat/agat_convert_genscan2gff/.config.vsh.yaml | 6 +++--- target/nextflow/agat/agat_convert_genscan2gff/main.nf | 6 +++--- .../agat/agat_convert_sp_gff2gtf/.config.vsh.yaml | 6 +++--- target/nextflow/agat/agat_convert_sp_gff2gtf/main.nf | 6 +++--- .../agat/agat_convert_sp_gff2tsv/.config.vsh.yaml | 6 +++--- target/nextflow/agat/agat_convert_sp_gff2tsv/main.nf | 6 +++--- .../agat/agat_convert_sp_gxf2gxf/.config.vsh.yaml | 6 +++--- target/nextflow/agat/agat_convert_sp_gxf2gxf/main.nf | 6 +++--- target/nextflow/arriba/.config.vsh.yaml | 6 +++--- target/nextflow/arriba/main.nf | 6 +++--- .../nextflow/bcftools/bcftools_annotate/.config.vsh.yaml | 6 +++--- target/nextflow/bcftools/bcftools_annotate/main.nf | 6 +++--- target/nextflow/bcftools/bcftools_concat/.config.vsh.yaml | 6 +++--- target/nextflow/bcftools/bcftools_concat/main.nf | 6 +++--- target/nextflow/bcftools/bcftools_norm/.config.vsh.yaml | 6 +++--- target/nextflow/bcftools/bcftools_norm/main.nf | 6 +++--- target/nextflow/bcftools/bcftools_sort/.config.vsh.yaml | 6 +++--- target/nextflow/bcftools/bcftools_sort/main.nf | 6 +++--- target/nextflow/bcftools/bcftools_stats/.config.vsh.yaml | 6 +++--- target/nextflow/bcftools/bcftools_stats/main.nf | 6 +++--- target/nextflow/bcl_convert/.config.vsh.yaml | 6 +++--- target/nextflow/bcl_convert/main.nf | 6 +++--- .../bd_rhapsody_make_reference/.config.vsh.yaml | 6 +++--- .../bd_rhapsody/bd_rhapsody_make_reference/main.nf | 6 +++--- .../bd_rhapsody_sequence_analysis/.config.vsh.yaml | 6 +++--- .../bd_rhapsody/bd_rhapsody_sequence_analysis/main.nf | 6 +++--- .../bedtools/bedtools_bamtofastq/.config.vsh.yaml | 6 +++--- target/nextflow/bedtools/bedtools_bamtofastq/main.nf | 6 +++--- .../bedtools/bedtools_bed12tobed6/.config.vsh.yaml | 6 +++--- target/nextflow/bedtools/bedtools_bed12tobed6/main.nf | 6 +++--- .../nextflow/bedtools/bedtools_bedtobam/.config.vsh.yaml | 6 +++--- target/nextflow/bedtools/bedtools_bedtobam/main.nf | 6 +++--- .../nextflow/bedtools/bedtools_genomecov/.config.vsh.yaml | 6 +++--- target/nextflow/bedtools/bedtools_genomecov/main.nf | 6 +++--- .../nextflow/bedtools/bedtools_getfasta/.config.vsh.yaml | 6 +++--- target/nextflow/bedtools/bedtools_getfasta/main.nf | 6 +++--- .../nextflow/bedtools/bedtools_groupby/.config.vsh.yaml | 6 +++--- target/nextflow/bedtools/bedtools_groupby/main.nf | 6 +++--- .../nextflow/bedtools/bedtools_intersect/.config.vsh.yaml | 6 +++--- target/nextflow/bedtools/bedtools_intersect/main.nf | 6 +++--- target/nextflow/bedtools/bedtools_links/.config.vsh.yaml | 6 +++--- target/nextflow/bedtools/bedtools_links/main.nf | 6 +++--- target/nextflow/bedtools/bedtools_merge/.config.vsh.yaml | 6 +++--- target/nextflow/bedtools/bedtools_merge/main.nf | 6 +++--- target/nextflow/bedtools/bedtools_sort/.config.vsh.yaml | 6 +++--- target/nextflow/bedtools/bedtools_sort/main.nf | 6 +++--- .../busco/busco_download_datasets/.config.vsh.yaml | 6 +++--- target/nextflow/busco/busco_download_datasets/main.nf | 6 +++--- .../nextflow/busco/busco_list_datasets/.config.vsh.yaml | 6 +++--- target/nextflow/busco/busco_list_datasets/main.nf | 6 +++--- target/nextflow/busco/busco_run/.config.vsh.yaml | 6 +++--- target/nextflow/busco/busco_run/main.nf | 6 +++--- target/nextflow/cutadapt/.config.vsh.yaml | 6 +++--- target/nextflow/cutadapt/main.nf | 8 ++++---- target/nextflow/falco/.config.vsh.yaml | 6 +++--- target/nextflow/falco/main.nf | 6 +++--- target/nextflow/fastp/.config.vsh.yaml | 6 +++--- target/nextflow/fastp/main.nf | 6 +++--- target/nextflow/fastqc/.config.vsh.yaml | 6 +++--- target/nextflow/fastqc/main.nf | 6 +++--- target/nextflow/featurecounts/.config.vsh.yaml | 6 +++--- target/nextflow/featurecounts/main.nf | 6 +++--- target/nextflow/fq_subsample/.config.vsh.yaml | 6 +++--- target/nextflow/fq_subsample/main.nf | 6 +++--- target/nextflow/gffread/.config.vsh.yaml | 6 +++--- target/nextflow/gffread/main.nf | 6 +++--- target/nextflow/kallisto/kallisto_index/.config.vsh.yaml | 6 +++--- target/nextflow/kallisto/kallisto_index/main.nf | 6 +++--- target/nextflow/kallisto/kallisto_quant/.config.vsh.yaml | 6 +++--- target/nextflow/kallisto/kallisto_quant/main.nf | 6 +++--- target/nextflow/lofreq/lofreq_call/.config.vsh.yaml | 6 +++--- target/nextflow/lofreq/lofreq_call/main.nf | 6 +++--- target/nextflow/lofreq/lofreq_indelqual/.config.vsh.yaml | 6 +++--- target/nextflow/lofreq/lofreq_indelqual/main.nf | 6 +++--- target/nextflow/multiqc/.config.vsh.yaml | 6 +++--- target/nextflow/multiqc/main.nf | 6 +++--- target/nextflow/pear/.config.vsh.yaml | 6 +++--- target/nextflow/pear/main.nf | 6 +++--- target/nextflow/qualimap/qualimap_rnaseq/.config.vsh.yaml | 6 +++--- target/nextflow/qualimap/qualimap_rnaseq/main.nf | 6 +++--- .../rsem/rsem_calculate_expression/.config.vsh.yaml | 6 +++--- target/nextflow/rsem/rsem_calculate_expression/main.nf | 6 +++--- .../nextflow/rsem/rsem_prepare_reference/.config.vsh.yaml | 6 +++--- target/nextflow/rsem/rsem_prepare_reference/main.nf | 6 +++--- target/nextflow/salmon/salmon_index/.config.vsh.yaml | 6 +++--- target/nextflow/salmon/salmon_index/main.nf | 6 +++--- target/nextflow/salmon/salmon_quant/.config.vsh.yaml | 6 +++--- target/nextflow/salmon/salmon_quant/main.nf | 6 +++--- .../nextflow/samtools/samtools_collate/.config.vsh.yaml | 6 +++--- target/nextflow/samtools/samtools_collate/main.nf | 6 +++--- target/nextflow/samtools/samtools_faidx/.config.vsh.yaml | 6 +++--- target/nextflow/samtools/samtools_faidx/main.nf | 6 +++--- target/nextflow/samtools/samtools_fasta/.config.vsh.yaml | 6 +++--- target/nextflow/samtools/samtools_fasta/main.nf | 6 +++--- target/nextflow/samtools/samtools_fastq/.config.vsh.yaml | 6 +++--- target/nextflow/samtools/samtools_fastq/main.nf | 6 +++--- .../nextflow/samtools/samtools_flagstat/.config.vsh.yaml | 6 +++--- target/nextflow/samtools/samtools_flagstat/main.nf | 6 +++--- .../nextflow/samtools/samtools_idxstats/.config.vsh.yaml | 6 +++--- target/nextflow/samtools/samtools_idxstats/main.nf | 6 +++--- target/nextflow/samtools/samtools_index/.config.vsh.yaml | 6 +++--- target/nextflow/samtools/samtools_index/main.nf | 6 +++--- target/nextflow/samtools/samtools_sort/.config.vsh.yaml | 6 +++--- target/nextflow/samtools/samtools_sort/main.nf | 6 +++--- target/nextflow/samtools/samtools_stats/.config.vsh.yaml | 6 +++--- target/nextflow/samtools/samtools_stats/main.nf | 6 +++--- target/nextflow/samtools/samtools_view/.config.vsh.yaml | 6 +++--- target/nextflow/samtools/samtools_view/main.nf | 6 +++--- target/nextflow/seqtk/seqtk_sample/.config.vsh.yaml | 6 +++--- target/nextflow/seqtk/seqtk_sample/main.nf | 6 +++--- target/nextflow/seqtk/seqtk_subseq/.config.vsh.yaml | 6 +++--- target/nextflow/seqtk/seqtk_subseq/main.nf | 6 +++--- target/nextflow/sortmerna/.config.vsh.yaml | 6 +++--- target/nextflow/sortmerna/main.nf | 6 +++--- target/nextflow/star/star_align_reads/.config.vsh.yaml | 6 +++--- target/nextflow/star/star_align_reads/main.nf | 6 +++--- .../nextflow/star/star_genome_generate/.config.vsh.yaml | 6 +++--- target/nextflow/star/star_genome_generate/main.nf | 6 +++--- target/nextflow/trimgalore/.config.vsh.yaml | 6 +++--- target/nextflow/trimgalore/main.nf | 6 +++--- .../nextflow/umi_tools/umi_tools_dedup/.config.vsh.yaml | 6 +++--- target/nextflow/umi_tools/umi_tools_dedup/main.nf | 6 +++--- .../nextflow/umi_tools/umi_tools_extract/.config.vsh.yaml | 6 +++--- target/nextflow/umi_tools/umi_tools_extract/main.nf | 6 +++--- .../umi_tools/umi_tools_prepareforrsem/.config.vsh.yaml | 6 +++--- .../nextflow/umi_tools/umi_tools_prepareforrsem/main.nf | 6 +++--- 262 files changed, 722 insertions(+), 718 deletions(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index a2aa5387..d1654375 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -13,6 +13,10 @@ * `falco`: Fix a typo in the `--reverse_complement` argument (PR #157). +## BUG FIXES + +* `cutadapt`: fix the the non-functional `action` parameter (PR #161). + ## MINOR CHANGES * Upgrade to Viash 0.9.0. diff --git a/src/cutadapt/script.sh b/src/cutadapt/script.sh index 20c92724..d181e2b0 100644 --- a/src/cutadapt/script.sh +++ b/src/cutadapt/script.sh @@ -108,7 +108,7 @@ input_args=$(echo \ ${par_overlap:+--overlap "${par_overlap}"} \ ${par_match_read_wildcards:+--match-read-wildcards} \ ${par_no_match_adapter_wildcards:+--no-match-adapter-wildcards} \ - ${par_action:+--action "${par_action}"} \ + ${par_action:+--action="${par_action}"} \ ${par_revcomp:+--revcomp} \ ) debug "Arguments to cutadapt:" diff --git a/target/executable/agat/agat_convert_bed2gff/.config.vsh.yaml b/target/executable/agat/agat_convert_bed2gff/.config.vsh.yaml index 689e6e57..02da0231 100644 --- a/target/executable/agat/agat_convert_bed2gff/.config.vsh.yaml +++ b/target/executable/agat/agat_convert_bed2gff/.config.vsh.yaml @@ -235,9 +235,9 @@ build_info: output: "target/executable/agat/agat_convert_bed2gff" executable: "target/executable/agat/agat_convert_bed2gff/agat_convert_bed2gff" viash_version: "0.9.0" - git_commit: "237a2e3a229ee589d1ebbc282526f87398e26f58" - git_remote: "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox" - git_tag: "v0.2.0-7-g237a2e3" + git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5" + git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox" + git_tag: "v0.2.0-8-g0a0edca" package_config: name: "biobox" version: "main" diff --git a/target/executable/agat/agat_convert_bed2gff/agat_convert_bed2gff b/target/executable/agat/agat_convert_bed2gff/agat_convert_bed2gff index 777b7a38..65deb778 100755 --- a/target/executable/agat/agat_convert_bed2gff/agat_convert_bed2gff +++ b/target/executable/agat/agat_convert_bed2gff/agat_convert_bed2gff @@ -515,9 +515,9 @@ RUN agat --version | sed 's/AGAT\s\(.*\)/agat: "\1"/' > /var/software_versions.t LABEL org.opencontainers.image.authors="Leïla Paquay" LABEL org.opencontainers.image.description="Companion container for running component agat agat_convert_bed2gff" -LABEL org.opencontainers.image.created="2024-09-27T09:55:19Z" +LABEL org.opencontainers.image.created="2024-10-03T12:50:46Z" LABEL org.opencontainers.image.source="https://github.com/NBISweden/AGAT" -LABEL org.opencontainers.image.revision="237a2e3a229ee589d1ebbc282526f87398e26f58" +LABEL org.opencontainers.image.revision="0a0edcacb5368517d249210022363bd9265f1bf5" LABEL org.opencontainers.image.version="main" VIASHDOCKER diff --git a/target/executable/agat/agat_convert_embl2gff/.config.vsh.yaml b/target/executable/agat/agat_convert_embl2gff/.config.vsh.yaml index bd1044f2..057a0cda 100644 --- a/target/executable/agat/agat_convert_embl2gff/.config.vsh.yaml +++ b/target/executable/agat/agat_convert_embl2gff/.config.vsh.yaml @@ -225,9 +225,9 @@ build_info: output: "target/executable/agat/agat_convert_embl2gff" executable: "target/executable/agat/agat_convert_embl2gff/agat_convert_embl2gff" viash_version: "0.9.0" - git_commit: "237a2e3a229ee589d1ebbc282526f87398e26f58" - git_remote: "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox" - git_tag: "v0.2.0-7-g237a2e3" + git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5" + git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox" + git_tag: "v0.2.0-8-g0a0edca" package_config: name: "biobox" version: "main" diff --git a/target/executable/agat/agat_convert_embl2gff/agat_convert_embl2gff b/target/executable/agat/agat_convert_embl2gff/agat_convert_embl2gff index 3797550d..588e0451 100755 --- a/target/executable/agat/agat_convert_embl2gff/agat_convert_embl2gff +++ b/target/executable/agat/agat_convert_embl2gff/agat_convert_embl2gff @@ -505,9 +505,9 @@ RUN agat --version | sed 's/AGAT\s\(.*\)/agat: "\1"/' > /var/software_versions.t LABEL org.opencontainers.image.authors="Leïla Paquay" LABEL org.opencontainers.image.description="Companion container for running component agat agat_convert_embl2gff" -LABEL org.opencontainers.image.created="2024-09-27T09:55:19Z" +LABEL org.opencontainers.image.created="2024-10-03T12:50:46Z" LABEL org.opencontainers.image.source="https://github.com/NBISweden/AGAT" -LABEL org.opencontainers.image.revision="237a2e3a229ee589d1ebbc282526f87398e26f58" +LABEL org.opencontainers.image.revision="0a0edcacb5368517d249210022363bd9265f1bf5" LABEL org.opencontainers.image.version="main" VIASHDOCKER diff --git a/target/executable/agat/agat_convert_genscan2gff/.config.vsh.yaml b/target/executable/agat/agat_convert_genscan2gff/.config.vsh.yaml index f8095003..20ac150f 100644 --- a/target/executable/agat/agat_convert_genscan2gff/.config.vsh.yaml +++ b/target/executable/agat/agat_convert_genscan2gff/.config.vsh.yaml @@ -230,9 +230,9 @@ build_info: output: "target/executable/agat/agat_convert_genscan2gff" executable: "target/executable/agat/agat_convert_genscan2gff/agat_convert_genscan2gff" viash_version: "0.9.0" - git_commit: "237a2e3a229ee589d1ebbc282526f87398e26f58" - git_remote: "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox" - git_tag: "v0.2.0-7-g237a2e3" + git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5" + git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox" + git_tag: "v0.2.0-8-g0a0edca" package_config: name: "biobox" version: "main" diff --git a/target/executable/agat/agat_convert_genscan2gff/agat_convert_genscan2gff b/target/executable/agat/agat_convert_genscan2gff/agat_convert_genscan2gff index 84b120a0..57aa410c 100755 --- a/target/executable/agat/agat_convert_genscan2gff/agat_convert_genscan2gff +++ b/target/executable/agat/agat_convert_genscan2gff/agat_convert_genscan2gff @@ -514,9 +514,9 @@ RUN agat --version | sed 's/AGAT\s\(.*\)/agat: "\1"/' > /var/software_versions.t LABEL org.opencontainers.image.authors="Leïla Paquay" LABEL org.opencontainers.image.description="Companion container for running component agat agat_convert_genscan2gff" -LABEL org.opencontainers.image.created="2024-09-27T09:55:20Z" +LABEL org.opencontainers.image.created="2024-10-03T12:50:47Z" LABEL org.opencontainers.image.source="https://github.com/NBISweden/AGAT" -LABEL org.opencontainers.image.revision="237a2e3a229ee589d1ebbc282526f87398e26f58" +LABEL org.opencontainers.image.revision="0a0edcacb5368517d249210022363bd9265f1bf5" LABEL org.opencontainers.image.version="main" VIASHDOCKER diff --git a/target/executable/agat/agat_convert_sp_gff2gtf/.config.vsh.yaml b/target/executable/agat/agat_convert_sp_gff2gtf/.config.vsh.yaml index 3393fd6e..f9108f66 100644 --- a/target/executable/agat/agat_convert_sp_gff2gtf/.config.vsh.yaml +++ b/target/executable/agat/agat_convert_sp_gff2gtf/.config.vsh.yaml @@ -228,9 +228,9 @@ build_info: output: "target/executable/agat/agat_convert_sp_gff2gtf" executable: "target/executable/agat/agat_convert_sp_gff2gtf/agat_convert_sp_gff2gtf" viash_version: "0.9.0" - git_commit: "237a2e3a229ee589d1ebbc282526f87398e26f58" - git_remote: "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox" - git_tag: "v0.2.0-7-g237a2e3" + git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5" + git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox" + git_tag: "v0.2.0-8-g0a0edca" package_config: name: "biobox" version: "main" diff --git a/target/executable/agat/agat_convert_sp_gff2gtf/agat_convert_sp_gff2gtf b/target/executable/agat/agat_convert_sp_gff2gtf/agat_convert_sp_gff2gtf index dd81b919..31991de7 100755 --- a/target/executable/agat/agat_convert_sp_gff2gtf/agat_convert_sp_gff2gtf +++ b/target/executable/agat/agat_convert_sp_gff2gtf/agat_convert_sp_gff2gtf @@ -519,9 +519,9 @@ RUN agat --version | sed 's/AGAT\s\(.*\)/agat: "\1"/' > /var/software_versions.t LABEL org.opencontainers.image.authors="Leïla Paquay" LABEL org.opencontainers.image.description="Companion container for running component agat agat_convert_sp_gff2gtf" -LABEL org.opencontainers.image.created="2024-09-27T09:55:20Z" +LABEL org.opencontainers.image.created="2024-10-03T12:50:47Z" LABEL org.opencontainers.image.source="https://github.com/NBISweden/AGAT" -LABEL org.opencontainers.image.revision="237a2e3a229ee589d1ebbc282526f87398e26f58" +LABEL org.opencontainers.image.revision="0a0edcacb5368517d249210022363bd9265f1bf5" LABEL org.opencontainers.image.version="main" VIASHDOCKER diff --git a/target/executable/agat/agat_convert_sp_gff2tsv/.config.vsh.yaml b/target/executable/agat/agat_convert_sp_gff2tsv/.config.vsh.yaml index 6e8cef89..f98370e3 100644 --- a/target/executable/agat/agat_convert_sp_gff2tsv/.config.vsh.yaml +++ b/target/executable/agat/agat_convert_sp_gff2tsv/.config.vsh.yaml @@ -188,9 +188,9 @@ build_info: output: "target/executable/agat/agat_convert_sp_gff2tsv" executable: "target/executable/agat/agat_convert_sp_gff2tsv/agat_convert_sp_gff2tsv" viash_version: "0.9.0" - git_commit: "237a2e3a229ee589d1ebbc282526f87398e26f58" - git_remote: "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox" - git_tag: "v0.2.0-7-g237a2e3" + git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5" + git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox" + git_tag: "v0.2.0-8-g0a0edca" package_config: name: "biobox" version: "main" diff --git a/target/executable/agat/agat_convert_sp_gff2tsv/agat_convert_sp_gff2tsv b/target/executable/agat/agat_convert_sp_gff2tsv/agat_convert_sp_gff2tsv index 4cc57c46..e283b3dc 100755 --- a/target/executable/agat/agat_convert_sp_gff2tsv/agat_convert_sp_gff2tsv +++ b/target/executable/agat/agat_convert_sp_gff2tsv/agat_convert_sp_gff2tsv @@ -484,9 +484,9 @@ RUN agat --version | sed 's/AGAT\s\(.*\)/agat: "\1"/' > /var/software_versions.t LABEL org.opencontainers.image.authors="Leïla Paquay" LABEL org.opencontainers.image.description="Companion container for running component agat agat_convert_sp_gff2tsv" -LABEL org.opencontainers.image.created="2024-09-27T09:55:19Z" +LABEL org.opencontainers.image.created="2024-10-03T12:50:46Z" LABEL org.opencontainers.image.source="https://github.com/NBISweden/AGAT" -LABEL org.opencontainers.image.revision="237a2e3a229ee589d1ebbc282526f87398e26f58" +LABEL org.opencontainers.image.revision="0a0edcacb5368517d249210022363bd9265f1bf5" LABEL org.opencontainers.image.version="main" VIASHDOCKER diff --git a/target/executable/agat/agat_convert_sp_gxf2gxf/.config.vsh.yaml b/target/executable/agat/agat_convert_sp_gxf2gxf/.config.vsh.yaml index 35f2498a..98886328 100644 --- a/target/executable/agat/agat_convert_sp_gxf2gxf/.config.vsh.yaml +++ b/target/executable/agat/agat_convert_sp_gxf2gxf/.config.vsh.yaml @@ -195,9 +195,9 @@ build_info: output: "target/executable/agat/agat_convert_sp_gxf2gxf" executable: "target/executable/agat/agat_convert_sp_gxf2gxf/agat_convert_sp_gxf2gxf" viash_version: "0.9.0" - git_commit: "237a2e3a229ee589d1ebbc282526f87398e26f58" - git_remote: "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox" - git_tag: "v0.2.0-7-g237a2e3" + git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5" + git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox" + git_tag: "v0.2.0-8-g0a0edca" package_config: name: "biobox" version: "main" diff --git a/target/executable/agat/agat_convert_sp_gxf2gxf/agat_convert_sp_gxf2gxf b/target/executable/agat/agat_convert_sp_gxf2gxf/agat_convert_sp_gxf2gxf index cfec5cee..3958c5be 100755 --- a/target/executable/agat/agat_convert_sp_gxf2gxf/agat_convert_sp_gxf2gxf +++ b/target/executable/agat/agat_convert_sp_gxf2gxf/agat_convert_sp_gxf2gxf @@ -493,9 +493,9 @@ RUN agat --version | sed 's/AGAT\s\(.*\)/agat: "\1"/' > /var/software_versions.t LABEL org.opencontainers.image.authors="Leïla Paquay" LABEL org.opencontainers.image.description="Companion container for running component agat agat_convert_sp_gxf2gxf" -LABEL org.opencontainers.image.created="2024-09-27T09:55:18Z" +LABEL org.opencontainers.image.created="2024-10-03T12:50:45Z" LABEL org.opencontainers.image.source="https://github.com/NBISweden/AGAT" -LABEL org.opencontainers.image.revision="237a2e3a229ee589d1ebbc282526f87398e26f58" +LABEL org.opencontainers.image.revision="0a0edcacb5368517d249210022363bd9265f1bf5" LABEL org.opencontainers.image.version="main" VIASHDOCKER diff --git a/target/executable/arriba/.config.vsh.yaml b/target/executable/arriba/.config.vsh.yaml index 187401e7..045fe275 100644 --- a/target/executable/arriba/.config.vsh.yaml +++ b/target/executable/arriba/.config.vsh.yaml @@ -706,9 +706,9 @@ build_info: output: "target/executable/arriba" executable: "target/executable/arriba/arriba" viash_version: "0.9.0" - git_commit: "237a2e3a229ee589d1ebbc282526f87398e26f58" - git_remote: "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox" - git_tag: "v0.2.0-7-g237a2e3" + git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5" + git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox" + git_tag: "v0.2.0-8-g0a0edca" package_config: name: "biobox" version: "main" diff --git a/target/executable/arriba/arriba b/target/executable/arriba/arriba index b0833728..482ff61f 100755 --- a/target/executable/arriba/arriba +++ b/target/executable/arriba/arriba @@ -754,9 +754,9 @@ RUN arriba -h | grep 'Version:' 2>&1 | sed 's/Version:\s\(.*\)/arriba: "\1"/' > LABEL org.opencontainers.image.authors="Robrecht Cannoodt" LABEL org.opencontainers.image.description="Companion container for running component arriba" -LABEL org.opencontainers.image.created="2024-09-27T09:55:22Z" +LABEL org.opencontainers.image.created="2024-10-03T12:50:49Z" LABEL org.opencontainers.image.source="https://github.com/suhrig/arriba" -LABEL org.opencontainers.image.revision="237a2e3a229ee589d1ebbc282526f87398e26f58" +LABEL org.opencontainers.image.revision="0a0edcacb5368517d249210022363bd9265f1bf5" LABEL org.opencontainers.image.version="main" VIASHDOCKER diff --git a/target/executable/bcftools/bcftools_annotate/.config.vsh.yaml b/target/executable/bcftools/bcftools_annotate/.config.vsh.yaml index 50c71f44..6de2e089 100644 --- a/target/executable/bcftools/bcftools_annotate/.config.vsh.yaml +++ b/target/executable/bcftools/bcftools_annotate/.config.vsh.yaml @@ -469,9 +469,9 @@ build_info: output: "target/executable/bcftools/bcftools_annotate" executable: "target/executable/bcftools/bcftools_annotate/bcftools_annotate" viash_version: "0.9.0" - git_commit: "237a2e3a229ee589d1ebbc282526f87398e26f58" - git_remote: "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox" - git_tag: "v0.2.0-7-g237a2e3" + git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5" + git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox" + git_tag: "v0.2.0-8-g0a0edca" package_config: name: "biobox" version: "main" diff --git a/target/executable/bcftools/bcftools_annotate/bcftools_annotate b/target/executable/bcftools/bcftools_annotate/bcftools_annotate index abe0f460..0d17c71a 100755 --- a/target/executable/bcftools/bcftools_annotate/bcftools_annotate +++ b/target/executable/bcftools/bcftools_annotate/bcftools_annotate @@ -650,9 +650,9 @@ RUN echo "bcftools: \"$(bcftools --version | grep 'bcftools' | sed -n 's/^bcftoo LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo" LABEL org.opencontainers.image.description="Companion container for running component bcftools bcftools_annotate" -LABEL org.opencontainers.image.created="2024-09-27T09:55:11Z" +LABEL org.opencontainers.image.created="2024-10-03T12:50:39Z" LABEL org.opencontainers.image.source="https://github.com/samtools/bcftools" -LABEL org.opencontainers.image.revision="237a2e3a229ee589d1ebbc282526f87398e26f58" +LABEL org.opencontainers.image.revision="0a0edcacb5368517d249210022363bd9265f1bf5" LABEL org.opencontainers.image.version="main" VIASHDOCKER diff --git a/target/executable/bcftools/bcftools_concat/.config.vsh.yaml b/target/executable/bcftools/bcftools_concat/.config.vsh.yaml index 29505fb9..f6625617 100644 --- a/target/executable/bcftools/bcftools_concat/.config.vsh.yaml +++ b/target/executable/bcftools/bcftools_concat/.config.vsh.yaml @@ -335,9 +335,9 @@ build_info: output: "target/executable/bcftools/bcftools_concat" executable: "target/executable/bcftools/bcftools_concat/bcftools_concat" viash_version: "0.9.0" - git_commit: "237a2e3a229ee589d1ebbc282526f87398e26f58" - git_remote: "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox" - git_tag: "v0.2.0-7-g237a2e3" + git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5" + git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox" + git_tag: "v0.2.0-8-g0a0edca" package_config: name: "biobox" version: "main" diff --git a/target/executable/bcftools/bcftools_concat/bcftools_concat b/target/executable/bcftools/bcftools_concat/bcftools_concat index 8b3eed71..b1e882ff 100755 --- a/target/executable/bcftools/bcftools_concat/bcftools_concat +++ b/target/executable/bcftools/bcftools_concat/bcftools_concat @@ -566,9 +566,9 @@ RUN echo "bcftools: \"$(bcftools --version | grep 'bcftools' | sed -n 's/^bcftoo LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo" LABEL org.opencontainers.image.description="Companion container for running component bcftools bcftools_concat" -LABEL org.opencontainers.image.created="2024-09-27T09:55:12Z" +LABEL org.opencontainers.image.created="2024-10-03T12:50:39Z" LABEL org.opencontainers.image.source="https://github.com/samtools/bcftools" -LABEL org.opencontainers.image.revision="237a2e3a229ee589d1ebbc282526f87398e26f58" +LABEL org.opencontainers.image.revision="0a0edcacb5368517d249210022363bd9265f1bf5" LABEL org.opencontainers.image.version="main" VIASHDOCKER diff --git a/target/executable/bcftools/bcftools_norm/.config.vsh.yaml b/target/executable/bcftools/bcftools_norm/.config.vsh.yaml index 9cd58bd0..1a741854 100644 --- a/target/executable/bcftools/bcftools_norm/.config.vsh.yaml +++ b/target/executable/bcftools/bcftools_norm/.config.vsh.yaml @@ -416,9 +416,9 @@ build_info: output: "target/executable/bcftools/bcftools_norm" executable: "target/executable/bcftools/bcftools_norm/bcftools_norm" viash_version: "0.9.0" - git_commit: "237a2e3a229ee589d1ebbc282526f87398e26f58" - git_remote: "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox" - git_tag: "v0.2.0-7-g237a2e3" + git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5" + git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox" + git_tag: "v0.2.0-8-g0a0edca" package_config: name: "biobox" version: "main" diff --git a/target/executable/bcftools/bcftools_norm/bcftools_norm b/target/executable/bcftools/bcftools_norm/bcftools_norm index b651ea9f..c78d7828 100755 --- a/target/executable/bcftools/bcftools_norm/bcftools_norm +++ b/target/executable/bcftools/bcftools_norm/bcftools_norm @@ -589,9 +589,9 @@ RUN echo "bcftools: \"$(bcftools --version | grep 'bcftools' | sed -n 's/^bcftoo LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo" LABEL org.opencontainers.image.description="Companion container for running component bcftools bcftools_norm" -LABEL org.opencontainers.image.created="2024-09-27T09:55:13Z" +LABEL org.opencontainers.image.created="2024-10-03T12:50:40Z" LABEL org.opencontainers.image.source="https://github.com/samtools/bcftools" -LABEL org.opencontainers.image.revision="237a2e3a229ee589d1ebbc282526f87398e26f58" +LABEL org.opencontainers.image.revision="0a0edcacb5368517d249210022363bd9265f1bf5" LABEL org.opencontainers.image.version="main" VIASHDOCKER diff --git a/target/executable/bcftools/bcftools_sort/.config.vsh.yaml b/target/executable/bcftools/bcftools_sort/.config.vsh.yaml index 11ad4c01..99792526 100644 --- a/target/executable/bcftools/bcftools_sort/.config.vsh.yaml +++ b/target/executable/bcftools/bcftools_sort/.config.vsh.yaml @@ -185,9 +185,9 @@ build_info: output: "target/executable/bcftools/bcftools_sort" executable: "target/executable/bcftools/bcftools_sort/bcftools_sort" viash_version: "0.9.0" - git_commit: "237a2e3a229ee589d1ebbc282526f87398e26f58" - git_remote: "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox" - git_tag: "v0.2.0-7-g237a2e3" + git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5" + git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox" + git_tag: "v0.2.0-8-g0a0edca" package_config: name: "biobox" version: "main" diff --git a/target/executable/bcftools/bcftools_sort/bcftools_sort b/target/executable/bcftools/bcftools_sort/bcftools_sort index da9accff..d872fadb 100755 --- a/target/executable/bcftools/bcftools_sort/bcftools_sort +++ b/target/executable/bcftools/bcftools_sort/bcftools_sort @@ -483,9 +483,9 @@ RUN echo "bcftools: \"$(bcftools --version | grep 'bcftools' | sed -n 's/^bcftoo LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo" LABEL org.opencontainers.image.description="Companion container for running component bcftools bcftools_sort" -LABEL org.opencontainers.image.created="2024-09-27T09:55:11Z" +LABEL org.opencontainers.image.created="2024-10-03T12:50:38Z" LABEL org.opencontainers.image.source="https://github.com/samtools/bcftools" -LABEL org.opencontainers.image.revision="237a2e3a229ee589d1ebbc282526f87398e26f58" +LABEL org.opencontainers.image.revision="0a0edcacb5368517d249210022363bd9265f1bf5" LABEL org.opencontainers.image.version="main" VIASHDOCKER diff --git a/target/executable/bcftools/bcftools_stats/.config.vsh.yaml b/target/executable/bcftools/bcftools_stats/.config.vsh.yaml index f7202326..ed516eea 100644 --- a/target/executable/bcftools/bcftools_stats/.config.vsh.yaml +++ b/target/executable/bcftools/bcftools_stats/.config.vsh.yaml @@ -458,9 +458,9 @@ build_info: output: "target/executable/bcftools/bcftools_stats" executable: "target/executable/bcftools/bcftools_stats/bcftools_stats" viash_version: "0.9.0" - git_commit: "237a2e3a229ee589d1ebbc282526f87398e26f58" - git_remote: "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox" - git_tag: "v0.2.0-7-g237a2e3" + git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5" + git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox" + git_tag: "v0.2.0-8-g0a0edca" package_config: name: "biobox" version: "main" diff --git a/target/executable/bcftools/bcftools_stats/bcftools_stats b/target/executable/bcftools/bcftools_stats/bcftools_stats index ee509473..3408cc04 100755 --- a/target/executable/bcftools/bcftools_stats/bcftools_stats +++ b/target/executable/bcftools/bcftools_stats/bcftools_stats @@ -626,9 +626,9 @@ RUN echo "bcftools: \"$(bcftools --version | grep 'bcftools' | sed -n 's/^bcftoo LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo" LABEL org.opencontainers.image.description="Companion container for running component bcftools bcftools_stats" -LABEL org.opencontainers.image.created="2024-09-27T09:55:12Z" +LABEL org.opencontainers.image.created="2024-10-03T12:50:39Z" LABEL org.opencontainers.image.source="https://github.com/samtools/bcftools" -LABEL org.opencontainers.image.revision="237a2e3a229ee589d1ebbc282526f87398e26f58" +LABEL org.opencontainers.image.revision="0a0edcacb5368517d249210022363bd9265f1bf5" LABEL org.opencontainers.image.version="main" VIASHDOCKER diff --git a/target/executable/bcl_convert/.config.vsh.yaml b/target/executable/bcl_convert/.config.vsh.yaml index 6af28b8a..6fa64802 100644 --- a/target/executable/bcl_convert/.config.vsh.yaml +++ b/target/executable/bcl_convert/.config.vsh.yaml @@ -418,9 +418,9 @@ build_info: output: "target/executable/bcl_convert" executable: "target/executable/bcl_convert/bcl_convert" viash_version: "0.9.0" - git_commit: "237a2e3a229ee589d1ebbc282526f87398e26f58" - git_remote: "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox" - git_tag: "v0.2.0-7-g237a2e3" + git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5" + git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox" + git_tag: "v0.2.0-8-g0a0edca" package_config: name: "biobox" version: "main" diff --git a/target/executable/bcl_convert/bcl_convert b/target/executable/bcl_convert/bcl_convert index cfad8b43..9698b473 100755 --- a/target/executable/bcl_convert/bcl_convert +++ b/target/executable/bcl_convert/bcl_convert @@ -599,9 +599,9 @@ RUN echo "bcl-convert: \"$(bcl-convert -V 2>&1 >/dev/null | sed -n '/Version/ s/ LABEL org.opencontainers.image.authors="Toni Verbeiren, Dorien Roosen" LABEL org.opencontainers.image.description="Companion container for running component bcl_convert" -LABEL org.opencontainers.image.created="2024-09-27T09:55:21Z" +LABEL org.opencontainers.image.created="2024-10-03T12:50:48Z" LABEL org.opencontainers.image.source="https://github.com/viash-hub/biobox" -LABEL org.opencontainers.image.revision="237a2e3a229ee589d1ebbc282526f87398e26f58" +LABEL org.opencontainers.image.revision="0a0edcacb5368517d249210022363bd9265f1bf5" LABEL org.opencontainers.image.version="main" VIASHDOCKER diff --git a/target/executable/bd_rhapsody/bd_rhapsody_make_reference/.config.vsh.yaml b/target/executable/bd_rhapsody/bd_rhapsody_make_reference/.config.vsh.yaml index e256b7a8..ffe7d767 100644 --- a/target/executable/bd_rhapsody/bd_rhapsody_make_reference/.config.vsh.yaml +++ b/target/executable/bd_rhapsody/bd_rhapsody_make_reference/.config.vsh.yaml @@ -274,9 +274,9 @@ build_info: output: "target/executable/bd_rhapsody/bd_rhapsody_make_reference" executable: "target/executable/bd_rhapsody/bd_rhapsody_make_reference/bd_rhapsody_make_reference" viash_version: "0.9.0" - git_commit: "237a2e3a229ee589d1ebbc282526f87398e26f58" - git_remote: "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox" - git_tag: "v0.2.0-7-g237a2e3" + git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5" + git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox" + git_tag: "v0.2.0-8-g0a0edca" package_config: name: "biobox" version: "main" diff --git a/target/executable/bd_rhapsody/bd_rhapsody_make_reference/bd_rhapsody_make_reference b/target/executable/bd_rhapsody/bd_rhapsody_make_reference/bd_rhapsody_make_reference index 77cdb7c6..a7e12aa0 100755 --- a/target/executable/bd_rhapsody/bd_rhapsody_make_reference/bd_rhapsody_make_reference +++ b/target/executable/bd_rhapsody/bd_rhapsody_make_reference/bd_rhapsody_make_reference @@ -554,9 +554,9 @@ RUN VERSION=$(ls -v /var/bd_rhapsody_cwl | grep '^v' | sed 's#v##' | tail -1) RUN echo "bdgenomics/rhapsody: \"$VERSION\"" > /var/software_versions.txt LABEL org.opencontainers.image.authors="Robrecht Cannoodt, Weiwei Schultz" LABEL org.opencontainers.image.description="Companion container for running component bd_rhapsody bd_rhapsody_make_reference" -LABEL org.opencontainers.image.created="2024-09-27T09:55:26Z" +LABEL org.opencontainers.image.created="2024-10-03T12:50:52Z" LABEL org.opencontainers.image.source="https://bitbucket.org/CRSwDev/cwl/src/master/v2.2.1/Extra_Utilities/" -LABEL org.opencontainers.image.revision="237a2e3a229ee589d1ebbc282526f87398e26f58" +LABEL org.opencontainers.image.revision="0a0edcacb5368517d249210022363bd9265f1bf5" LABEL org.opencontainers.image.version="main" VIASHDOCKER diff --git a/target/executable/bd_rhapsody/bd_rhapsody_sequence_analysis/.config.vsh.yaml b/target/executable/bd_rhapsody/bd_rhapsody_sequence_analysis/.config.vsh.yaml index 4537aa67..68e9bf4f 100644 --- a/target/executable/bd_rhapsody/bd_rhapsody_sequence_analysis/.config.vsh.yaml +++ b/target/executable/bd_rhapsody/bd_rhapsody_sequence_analysis/.config.vsh.yaml @@ -1115,9 +1115,9 @@ build_info: output: "target/executable/bd_rhapsody/bd_rhapsody_sequence_analysis" executable: "target/executable/bd_rhapsody/bd_rhapsody_sequence_analysis/bd_rhapsody_sequence_analysis" viash_version: "0.9.0" - git_commit: "237a2e3a229ee589d1ebbc282526f87398e26f58" - git_remote: "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox" - git_tag: "v0.2.0-7-g237a2e3" + git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5" + git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox" + git_tag: "v0.2.0-8-g0a0edca" package_config: name: "biobox" version: "main" diff --git a/target/executable/bd_rhapsody/bd_rhapsody_sequence_analysis/bd_rhapsody_sequence_analysis b/target/executable/bd_rhapsody/bd_rhapsody_sequence_analysis/bd_rhapsody_sequence_analysis index 91352e93..605c9363 100755 --- a/target/executable/bd_rhapsody/bd_rhapsody_sequence_analysis/bd_rhapsody_sequence_analysis +++ b/target/executable/bd_rhapsody/bd_rhapsody_sequence_analysis/bd_rhapsody_sequence_analysis @@ -954,9 +954,9 @@ RUN VERSION=$(ls -v /var/bd_rhapsody_cwl | grep '^v' | sed 's#v##' | tail -1) RUN echo "bdgenomics/rhapsody: \"$VERSION\"" > /var/software_versions.txt LABEL org.opencontainers.image.authors="Robrecht Cannoodt, Weiwei Schultz" LABEL org.opencontainers.image.description="Companion container for running component bd_rhapsody bd_rhapsody_sequence_analysis" -LABEL org.opencontainers.image.created="2024-09-27T09:55:25Z" +LABEL org.opencontainers.image.created="2024-10-03T12:50:52Z" LABEL org.opencontainers.image.source="https://bitbucket.org/CRSwDev/cwl/src/master/v2.2.1" -LABEL org.opencontainers.image.revision="237a2e3a229ee589d1ebbc282526f87398e26f58" +LABEL org.opencontainers.image.revision="0a0edcacb5368517d249210022363bd9265f1bf5" LABEL org.opencontainers.image.version="main" VIASHDOCKER diff --git a/target/executable/bedtools/bedtools_bamtofastq/.config.vsh.yaml b/target/executable/bedtools/bedtools_bamtofastq/.config.vsh.yaml index 80d353ca..9bd63337 100644 --- a/target/executable/bedtools/bedtools_bamtofastq/.config.vsh.yaml +++ b/target/executable/bedtools/bedtools_bamtofastq/.config.vsh.yaml @@ -187,9 +187,9 @@ build_info: output: "target/executable/bedtools/bedtools_bamtofastq" executable: "target/executable/bedtools/bedtools_bamtofastq/bedtools_bamtofastq" viash_version: "0.9.0" - git_commit: "237a2e3a229ee589d1ebbc282526f87398e26f58" - git_remote: "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox" - git_tag: "v0.2.0-7-g237a2e3" + git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5" + git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox" + git_tag: "v0.2.0-8-g0a0edca" package_config: name: "biobox" version: "main" diff --git a/target/executable/bedtools/bedtools_bamtofastq/bedtools_bamtofastq b/target/executable/bedtools/bedtools_bamtofastq/bedtools_bamtofastq index 01ecc577..264e86a9 100755 --- a/target/executable/bedtools/bedtools_bamtofastq/bedtools_bamtofastq +++ b/target/executable/bedtools/bedtools_bamtofastq/bedtools_bamtofastq @@ -483,9 +483,9 @@ RUN echo "bedtools: \"$(bedtools --version | sed -n 's/^bedtools //p')\"" > /var LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo" LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_bamtofastq" -LABEL org.opencontainers.image.created="2024-09-27T09:55:04Z" +LABEL org.opencontainers.image.created="2024-10-03T12:50:31Z" LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2" -LABEL org.opencontainers.image.revision="237a2e3a229ee589d1ebbc282526f87398e26f58" +LABEL org.opencontainers.image.revision="0a0edcacb5368517d249210022363bd9265f1bf5" LABEL org.opencontainers.image.version="main" VIASHDOCKER diff --git a/target/executable/bedtools/bedtools_bed12tobed6/.config.vsh.yaml b/target/executable/bedtools/bedtools_bed12tobed6/.config.vsh.yaml index de17f12d..461d6362 100644 --- a/target/executable/bedtools/bedtools_bed12tobed6/.config.vsh.yaml +++ b/target/executable/bedtools/bedtools_bed12tobed6/.config.vsh.yaml @@ -176,9 +176,9 @@ build_info: output: "target/executable/bedtools/bedtools_bed12tobed6" executable: "target/executable/bedtools/bedtools_bed12tobed6/bedtools_bed12tobed6" viash_version: "0.9.0" - git_commit: "237a2e3a229ee589d1ebbc282526f87398e26f58" - git_remote: "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox" - git_tag: "v0.2.0-7-g237a2e3" + git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5" + git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox" + git_tag: "v0.2.0-8-g0a0edca" package_config: name: "biobox" version: "main" diff --git a/target/executable/bedtools/bedtools_bed12tobed6/bedtools_bed12tobed6 b/target/executable/bedtools/bedtools_bed12tobed6/bedtools_bed12tobed6 index 70581a26..cb5dfe81 100755 --- a/target/executable/bedtools/bedtools_bed12tobed6/bedtools_bed12tobed6 +++ b/target/executable/bedtools/bedtools_bed12tobed6/bedtools_bed12tobed6 @@ -480,9 +480,9 @@ RUN echo "bedtools: \"$(bedtools --version | sed -n 's/^bedtools //p')\"" > /var LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo" LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_bed12tobed6" -LABEL org.opencontainers.image.created="2024-09-27T09:55:02Z" +LABEL org.opencontainers.image.created="2024-10-03T12:50:30Z" LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2" -LABEL org.opencontainers.image.revision="237a2e3a229ee589d1ebbc282526f87398e26f58" +LABEL org.opencontainers.image.revision="0a0edcacb5368517d249210022363bd9265f1bf5" LABEL org.opencontainers.image.version="main" VIASHDOCKER diff --git a/target/executable/bedtools/bedtools_bedtobam/.config.vsh.yaml b/target/executable/bedtools/bedtools_bedtobam/.config.vsh.yaml index ff2e1663..583c6505 100644 --- a/target/executable/bedtools/bedtools_bedtobam/.config.vsh.yaml +++ b/target/executable/bedtools/bedtools_bedtobam/.config.vsh.yaml @@ -214,9 +214,9 @@ build_info: output: "target/executable/bedtools/bedtools_bedtobam" executable: "target/executable/bedtools/bedtools_bedtobam/bedtools_bedtobam" viash_version: "0.9.0" - git_commit: "237a2e3a229ee589d1ebbc282526f87398e26f58" - git_remote: "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox" - git_tag: "v0.2.0-7-g237a2e3" + git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5" + git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox" + git_tag: "v0.2.0-8-g0a0edca" package_config: name: "biobox" version: "main" diff --git a/target/executable/bedtools/bedtools_bedtobam/bedtools_bedtobam b/target/executable/bedtools/bedtools_bedtobam/bedtools_bedtobam index a55c5704..e1cccba0 100755 --- a/target/executable/bedtools/bedtools_bedtobam/bedtools_bedtobam +++ b/target/executable/bedtools/bedtools_bedtobam/bedtools_bedtobam @@ -496,9 +496,9 @@ RUN echo "bedtools: \"$(bedtools --version | sed -n 's/^bedtools //p')\"" > /var LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo" LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_bedtobam" -LABEL org.opencontainers.image.created="2024-09-27T09:55:05Z" +LABEL org.opencontainers.image.created="2024-10-03T12:50:32Z" LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2" -LABEL org.opencontainers.image.revision="237a2e3a229ee589d1ebbc282526f87398e26f58" +LABEL org.opencontainers.image.revision="0a0edcacb5368517d249210022363bd9265f1bf5" LABEL org.opencontainers.image.version="main" VIASHDOCKER diff --git a/target/executable/bedtools/bedtools_genomecov/.config.vsh.yaml b/target/executable/bedtools/bedtools_genomecov/.config.vsh.yaml index ed649c71..8f29b552 100644 --- a/target/executable/bedtools/bedtools_genomecov/.config.vsh.yaml +++ b/target/executable/bedtools/bedtools_genomecov/.config.vsh.yaml @@ -337,9 +337,9 @@ build_info: output: "target/executable/bedtools/bedtools_genomecov" executable: "target/executable/bedtools/bedtools_genomecov/bedtools_genomecov" viash_version: "0.9.0" - git_commit: "237a2e3a229ee589d1ebbc282526f87398e26f58" - git_remote: "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox" - git_tag: "v0.2.0-7-g237a2e3" + git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5" + git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox" + git_tag: "v0.2.0-8-g0a0edca" package_config: name: "biobox" version: "main" diff --git a/target/executable/bedtools/bedtools_genomecov/bedtools_genomecov b/target/executable/bedtools/bedtools_genomecov/bedtools_genomecov index 6810fe02..3d849878 100755 --- a/target/executable/bedtools/bedtools_genomecov/bedtools_genomecov +++ b/target/executable/bedtools/bedtools_genomecov/bedtools_genomecov @@ -591,9 +591,9 @@ RUN echo "bedtools: \"$(bedtools --version | sed -n 's/^bedtools //p')\"" > /var LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo" LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_genomecov" -LABEL org.opencontainers.image.created="2024-09-27T09:55:02Z" +LABEL org.opencontainers.image.created="2024-10-03T12:50:29Z" LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2" -LABEL org.opencontainers.image.revision="237a2e3a229ee589d1ebbc282526f87398e26f58" +LABEL org.opencontainers.image.revision="0a0edcacb5368517d249210022363bd9265f1bf5" LABEL org.opencontainers.image.version="main" VIASHDOCKER diff --git a/target/executable/bedtools/bedtools_getfasta/.config.vsh.yaml b/target/executable/bedtools/bedtools_getfasta/.config.vsh.yaml index fee494dd..abdfb0d8 100644 --- a/target/executable/bedtools/bedtools_getfasta/.config.vsh.yaml +++ b/target/executable/bedtools/bedtools_getfasta/.config.vsh.yaml @@ -232,9 +232,9 @@ build_info: output: "target/executable/bedtools/bedtools_getfasta" executable: "target/executable/bedtools/bedtools_getfasta/bedtools_getfasta" viash_version: "0.9.0" - git_commit: "237a2e3a229ee589d1ebbc282526f87398e26f58" - git_remote: "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox" - git_tag: "v0.2.0-7-g237a2e3" + git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5" + git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox" + git_tag: "v0.2.0-8-g0a0edca" package_config: name: "biobox" version: "main" diff --git a/target/executable/bedtools/bedtools_getfasta/bedtools_getfasta b/target/executable/bedtools/bedtools_getfasta/bedtools_getfasta index ab58e0ca..945a3f40 100755 --- a/target/executable/bedtools/bedtools_getfasta/bedtools_getfasta +++ b/target/executable/bedtools/bedtools_getfasta/bedtools_getfasta @@ -526,9 +526,9 @@ RUN echo "bedtools: \"$(bedtools --version | sed -n 's/^bedtools //p')\"" > /var LABEL org.opencontainers.image.authors="Dries Schaumont" LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_getfasta" -LABEL org.opencontainers.image.created="2024-09-27T09:55:02Z" +LABEL org.opencontainers.image.created="2024-10-03T12:50:30Z" LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2" -LABEL org.opencontainers.image.revision="237a2e3a229ee589d1ebbc282526f87398e26f58" +LABEL org.opencontainers.image.revision="0a0edcacb5368517d249210022363bd9265f1bf5" LABEL org.opencontainers.image.version="main" VIASHDOCKER diff --git a/target/executable/bedtools/bedtools_groupby/.config.vsh.yaml b/target/executable/bedtools/bedtools_groupby/.config.vsh.yaml index d737249a..be1cda1a 100644 --- a/target/executable/bedtools/bedtools_groupby/.config.vsh.yaml +++ b/target/executable/bedtools/bedtools_groupby/.config.vsh.yaml @@ -273,9 +273,9 @@ build_info: output: "target/executable/bedtools/bedtools_groupby" executable: "target/executable/bedtools/bedtools_groupby/bedtools_groupby" viash_version: "0.9.0" - git_commit: "237a2e3a229ee589d1ebbc282526f87398e26f58" - git_remote: "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox" - git_tag: "v0.2.0-7-g237a2e3" + git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5" + git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox" + git_tag: "v0.2.0-8-g0a0edca" package_config: name: "biobox" version: "main" diff --git a/target/executable/bedtools/bedtools_groupby/bedtools_groupby b/target/executable/bedtools/bedtools_groupby/bedtools_groupby index 66a339c7..9a5726c0 100755 --- a/target/executable/bedtools/bedtools_groupby/bedtools_groupby +++ b/target/executable/bedtools/bedtools_groupby/bedtools_groupby @@ -552,9 +552,9 @@ RUN echo "bedtools: \"$(bedtools --version | sed -n 's/^bedtools //p')\"" > /var LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo" LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_groupby" -LABEL org.opencontainers.image.created="2024-09-27T09:55:04Z" +LABEL org.opencontainers.image.created="2024-10-03T12:50:31Z" LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2" -LABEL org.opencontainers.image.revision="237a2e3a229ee589d1ebbc282526f87398e26f58" +LABEL org.opencontainers.image.revision="0a0edcacb5368517d249210022363bd9265f1bf5" LABEL org.opencontainers.image.version="main" VIASHDOCKER diff --git a/target/executable/bedtools/bedtools_intersect/.config.vsh.yaml b/target/executable/bedtools/bedtools_intersect/.config.vsh.yaml index 3605ad6a..3e912a83 100644 --- a/target/executable/bedtools/bedtools_intersect/.config.vsh.yaml +++ b/target/executable/bedtools/bedtools_intersect/.config.vsh.yaml @@ -410,9 +410,9 @@ build_info: output: "target/executable/bedtools/bedtools_intersect" executable: "target/executable/bedtools/bedtools_intersect/bedtools_intersect" viash_version: "0.9.0" - git_commit: "237a2e3a229ee589d1ebbc282526f87398e26f58" - git_remote: "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox" - git_tag: "v0.2.0-7-g237a2e3" + git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5" + git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox" + git_tag: "v0.2.0-8-g0a0edca" package_config: name: "biobox" version: "main" diff --git a/target/executable/bedtools/bedtools_intersect/bedtools_intersect b/target/executable/bedtools/bedtools_intersect/bedtools_intersect index 97a7212c..0841290a 100755 --- a/target/executable/bedtools/bedtools_intersect/bedtools_intersect +++ b/target/executable/bedtools/bedtools_intersect/bedtools_intersect @@ -633,9 +633,9 @@ RUN echo "bedtools: \"$(bedtools --version | sed -n 's/^bedtools //p')\"" > /var LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo" LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_intersect" -LABEL org.opencontainers.image.created="2024-09-27T09:55:03Z" +LABEL org.opencontainers.image.created="2024-10-03T12:50:30Z" LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2" -LABEL org.opencontainers.image.revision="237a2e3a229ee589d1ebbc282526f87398e26f58" +LABEL org.opencontainers.image.revision="0a0edcacb5368517d249210022363bd9265f1bf5" LABEL org.opencontainers.image.version="main" VIASHDOCKER diff --git a/target/executable/bedtools/bedtools_links/.config.vsh.yaml b/target/executable/bedtools/bedtools_links/.config.vsh.yaml index c11f5600..4d954872 100644 --- a/target/executable/bedtools/bedtools_links/.config.vsh.yaml +++ b/target/executable/bedtools/bedtools_links/.config.vsh.yaml @@ -210,9 +210,9 @@ build_info: output: "target/executable/bedtools/bedtools_links" executable: "target/executable/bedtools/bedtools_links/bedtools_links" viash_version: "0.9.0" - git_commit: "237a2e3a229ee589d1ebbc282526f87398e26f58" - git_remote: "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox" - git_tag: "v0.2.0-7-g237a2e3" + git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5" + git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox" + git_tag: "v0.2.0-8-g0a0edca" package_config: name: "biobox" version: "main" diff --git a/target/executable/bedtools/bedtools_links/bedtools_links b/target/executable/bedtools/bedtools_links/bedtools_links index 5e999c10..b4b1dfb2 100755 --- a/target/executable/bedtools/bedtools_links/bedtools_links +++ b/target/executable/bedtools/bedtools_links/bedtools_links @@ -500,9 +500,9 @@ RUN echo "bedtools: \"$(bedtools --version | sed -n 's/^bedtools //p')\"" > /var LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo" LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_links" -LABEL org.opencontainers.image.created="2024-09-27T09:55:03Z" +LABEL org.opencontainers.image.created="2024-10-03T12:50:31Z" LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2" -LABEL org.opencontainers.image.revision="237a2e3a229ee589d1ebbc282526f87398e26f58" +LABEL org.opencontainers.image.revision="0a0edcacb5368517d249210022363bd9265f1bf5" LABEL org.opencontainers.image.version="main" VIASHDOCKER diff --git a/target/executable/bedtools/bedtools_merge/.config.vsh.yaml b/target/executable/bedtools/bedtools_merge/.config.vsh.yaml index a94b0c9a..d8b6a449 100644 --- a/target/executable/bedtools/bedtools_merge/.config.vsh.yaml +++ b/target/executable/bedtools/bedtools_merge/.config.vsh.yaml @@ -279,9 +279,9 @@ build_info: output: "target/executable/bedtools/bedtools_merge" executable: "target/executable/bedtools/bedtools_merge/bedtools_merge" viash_version: "0.9.0" - git_commit: "237a2e3a229ee589d1ebbc282526f87398e26f58" - git_remote: "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox" - git_tag: "v0.2.0-7-g237a2e3" + git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5" + git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox" + git_tag: "v0.2.0-8-g0a0edca" package_config: name: "biobox" version: "main" diff --git a/target/executable/bedtools/bedtools_merge/bedtools_merge b/target/executable/bedtools/bedtools_merge/bedtools_merge index a68d0b23..d43a0e1d 100755 --- a/target/executable/bedtools/bedtools_merge/bedtools_merge +++ b/target/executable/bedtools/bedtools_merge/bedtools_merge @@ -558,9 +558,9 @@ RUN echo "bedtools: \"$(bedtools --version | sed -n 's/^bedtools //p')\"" > /var LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo" LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_merge" -LABEL org.opencontainers.image.created="2024-09-27T09:55:01Z" +LABEL org.opencontainers.image.created="2024-10-03T12:50:29Z" LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2" -LABEL org.opencontainers.image.revision="237a2e3a229ee589d1ebbc282526f87398e26f58" +LABEL org.opencontainers.image.revision="0a0edcacb5368517d249210022363bd9265f1bf5" LABEL org.opencontainers.image.version="main" VIASHDOCKER diff --git a/target/executable/bedtools/bedtools_sort/.config.vsh.yaml b/target/executable/bedtools/bedtools_sort/.config.vsh.yaml index 10755947..129d65cf 100644 --- a/target/executable/bedtools/bedtools_sort/.config.vsh.yaml +++ b/target/executable/bedtools/bedtools_sort/.config.vsh.yaml @@ -222,9 +222,9 @@ build_info: output: "target/executable/bedtools/bedtools_sort" executable: "target/executable/bedtools/bedtools_sort/bedtools_sort" viash_version: "0.9.0" - git_commit: "237a2e3a229ee589d1ebbc282526f87398e26f58" - git_remote: "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox" - git_tag: "v0.2.0-7-g237a2e3" + git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5" + git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox" + git_tag: "v0.2.0-8-g0a0edca" package_config: name: "biobox" version: "main" diff --git a/target/executable/bedtools/bedtools_sort/bedtools_sort b/target/executable/bedtools/bedtools_sort/bedtools_sort index c8d4b75d..02eed57f 100755 --- a/target/executable/bedtools/bedtools_sort/bedtools_sort +++ b/target/executable/bedtools/bedtools_sort/bedtools_sort @@ -509,9 +509,9 @@ RUN echo "bedtools: \"$(bedtools --version | sed -n 's/^bedtools //p')\"" > /var LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo" LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_sort" -LABEL org.opencontainers.image.created="2024-09-27T09:55:04Z" +LABEL org.opencontainers.image.created="2024-10-03T12:50:32Z" LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2" -LABEL org.opencontainers.image.revision="237a2e3a229ee589d1ebbc282526f87398e26f58" +LABEL org.opencontainers.image.revision="0a0edcacb5368517d249210022363bd9265f1bf5" LABEL org.opencontainers.image.version="main" VIASHDOCKER diff --git a/target/executable/busco/busco_download_datasets/.config.vsh.yaml b/target/executable/busco/busco_download_datasets/.config.vsh.yaml index e0b967e5..85b0f452 100644 --- a/target/executable/busco/busco_download_datasets/.config.vsh.yaml +++ b/target/executable/busco/busco_download_datasets/.config.vsh.yaml @@ -158,9 +158,9 @@ build_info: output: "target/executable/busco/busco_download_datasets" executable: "target/executable/busco/busco_download_datasets/busco_download_datasets" viash_version: "0.9.0" - git_commit: "237a2e3a229ee589d1ebbc282526f87398e26f58" - git_remote: "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox" - git_tag: "v0.2.0-7-g237a2e3" + git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5" + git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox" + git_tag: "v0.2.0-8-g0a0edca" package_config: name: "biobox" version: "main" diff --git a/target/executable/busco/busco_download_datasets/busco_download_datasets b/target/executable/busco/busco_download_datasets/busco_download_datasets index 00b5bd80..dfc3cc6c 100755 --- a/target/executable/busco/busco_download_datasets/busco_download_datasets +++ b/target/executable/busco/busco_download_datasets/busco_download_datasets @@ -475,9 +475,9 @@ RUN busco --version | sed 's/BUSCO\s\(.*\)/busco: "\1"/' > /var/software_version LABEL org.opencontainers.image.authors="Dorien Roosen" LABEL org.opencontainers.image.description="Companion container for running component busco busco_download_datasets" -LABEL org.opencontainers.image.created="2024-09-27T09:55:16Z" +LABEL org.opencontainers.image.created="2024-10-03T12:50:43Z" LABEL org.opencontainers.image.source="https://gitlab.com/ezlab/busco" -LABEL org.opencontainers.image.revision="237a2e3a229ee589d1ebbc282526f87398e26f58" +LABEL org.opencontainers.image.revision="0a0edcacb5368517d249210022363bd9265f1bf5" LABEL org.opencontainers.image.version="main" VIASHDOCKER diff --git a/target/executable/busco/busco_list_datasets/.config.vsh.yaml b/target/executable/busco/busco_list_datasets/.config.vsh.yaml index 806b523a..875b8577 100644 --- a/target/executable/busco/busco_list_datasets/.config.vsh.yaml +++ b/target/executable/busco/busco_list_datasets/.config.vsh.yaml @@ -145,9 +145,9 @@ build_info: output: "target/executable/busco/busco_list_datasets" executable: "target/executable/busco/busco_list_datasets/busco_list_datasets" viash_version: "0.9.0" - git_commit: "237a2e3a229ee589d1ebbc282526f87398e26f58" - git_remote: "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox" - git_tag: "v0.2.0-7-g237a2e3" + git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5" + git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox" + git_tag: "v0.2.0-8-g0a0edca" package_config: name: "biobox" version: "main" diff --git a/target/executable/busco/busco_list_datasets/busco_list_datasets b/target/executable/busco/busco_list_datasets/busco_list_datasets index 4e94932c..58eb83ce 100755 --- a/target/executable/busco/busco_list_datasets/busco_list_datasets +++ b/target/executable/busco/busco_list_datasets/busco_list_datasets @@ -465,9 +465,9 @@ RUN busco --version | sed 's/BUSCO\s\(.*\)/busco: "\1"/' > /var/software_version LABEL org.opencontainers.image.authors="Dorien Roosen" LABEL org.opencontainers.image.description="Companion container for running component busco busco_list_datasets" -LABEL org.opencontainers.image.created="2024-09-27T09:55:16Z" +LABEL org.opencontainers.image.created="2024-10-03T12:50:43Z" LABEL org.opencontainers.image.source="https://gitlab.com/ezlab/busco" -LABEL org.opencontainers.image.revision="237a2e3a229ee589d1ebbc282526f87398e26f58" +LABEL org.opencontainers.image.revision="0a0edcacb5368517d249210022363bd9265f1bf5" LABEL org.opencontainers.image.version="main" VIASHDOCKER diff --git a/target/executable/busco/busco_run/.config.vsh.yaml b/target/executable/busco/busco_run/.config.vsh.yaml index 2515ad56..0c89b7ab 100644 --- a/target/executable/busco/busco_run/.config.vsh.yaml +++ b/target/executable/busco/busco_run/.config.vsh.yaml @@ -423,9 +423,9 @@ build_info: output: "target/executable/busco/busco_run" executable: "target/executable/busco/busco_run/busco_run" viash_version: "0.9.0" - git_commit: "237a2e3a229ee589d1ebbc282526f87398e26f58" - git_remote: "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox" - git_tag: "v0.2.0-7-g237a2e3" + git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5" + git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox" + git_tag: "v0.2.0-8-g0a0edca" package_config: name: "biobox" version: "main" diff --git a/target/executable/busco/busco_run/busco_run b/target/executable/busco/busco_run/busco_run index 832fe718..aee56017 100755 --- a/target/executable/busco/busco_run/busco_run +++ b/target/executable/busco/busco_run/busco_run @@ -632,9 +632,9 @@ RUN busco --version | sed 's/BUSCO\s\(.*\)/busco: "\1"/' > /var/software_version LABEL org.opencontainers.image.authors="Dorien Roosen" LABEL org.opencontainers.image.description="Companion container for running component busco busco_run" -LABEL org.opencontainers.image.created="2024-09-27T09:55:16Z" +LABEL org.opencontainers.image.created="2024-10-03T12:50:43Z" LABEL org.opencontainers.image.source="https://gitlab.com/ezlab/busco" -LABEL org.opencontainers.image.revision="237a2e3a229ee589d1ebbc282526f87398e26f58" +LABEL org.opencontainers.image.revision="0a0edcacb5368517d249210022363bd9265f1bf5" LABEL org.opencontainers.image.version="main" VIASHDOCKER diff --git a/target/executable/cutadapt/.config.vsh.yaml b/target/executable/cutadapt/.config.vsh.yaml index a8c00370..0c0f76db 100644 --- a/target/executable/cutadapt/.config.vsh.yaml +++ b/target/executable/cutadapt/.config.vsh.yaml @@ -740,9 +740,9 @@ build_info: output: "target/executable/cutadapt" executable: "target/executable/cutadapt/cutadapt" viash_version: "0.9.0" - git_commit: "237a2e3a229ee589d1ebbc282526f87398e26f58" - git_remote: "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox" - git_tag: "v0.2.0-7-g237a2e3" + git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5" + git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox" + git_tag: "v0.2.0-8-g0a0edca" package_config: name: "biobox" version: "main" diff --git a/target/executable/cutadapt/cutadapt b/target/executable/cutadapt/cutadapt index d2a61b22..f1ce9ad0 100755 --- a/target/executable/cutadapt/cutadapt +++ b/target/executable/cutadapt/cutadapt @@ -831,9 +831,9 @@ RUN cutadapt --version | sed 's/\(.*\)/cutadapt: "\1"/' > /var/software_versions LABEL org.opencontainers.image.authors="Toni Verbeiren" LABEL org.opencontainers.image.description="Companion container for running component cutadapt" -LABEL org.opencontainers.image.created="2024-09-27T09:55:24Z" +LABEL org.opencontainers.image.created="2024-10-03T12:50:51Z" LABEL org.opencontainers.image.source="https://github.com/marcelm/cutadapt" -LABEL org.opencontainers.image.revision="237a2e3a229ee589d1ebbc282526f87398e26f58" +LABEL org.opencontainers.image.revision="0a0edcacb5368517d249210022363bd9265f1bf5" LABEL org.opencontainers.image.version="main" VIASHDOCKER @@ -2600,7 +2600,7 @@ input_args=\$(echo \\ \${par_overlap:+--overlap "\${par_overlap}"} \\ \${par_match_read_wildcards:+--match-read-wildcards} \\ \${par_no_match_adapter_wildcards:+--no-match-adapter-wildcards} \\ - \${par_action:+--action "\${par_action}"} \\ + \${par_action:+--action="\${par_action}"} \\ \${par_revcomp:+--revcomp} \\ ) debug "Arguments to cutadapt:" diff --git a/target/executable/falco/.config.vsh.yaml b/target/executable/falco/.config.vsh.yaml index 090d69ac..d3bc2c10 100644 --- a/target/executable/falco/.config.vsh.yaml +++ b/target/executable/falco/.config.vsh.yaml @@ -317,9 +317,9 @@ build_info: output: "target/executable/falco" executable: "target/executable/falco/falco" viash_version: "0.9.0" - git_commit: "237a2e3a229ee589d1ebbc282526f87398e26f58" - git_remote: "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox" - git_tag: "v0.2.0-7-g237a2e3" + git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5" + git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox" + git_tag: "v0.2.0-8-g0a0edca" package_config: name: "biobox" version: "main" diff --git a/target/executable/falco/falco b/target/executable/falco/falco index 804dbbcb..fc5bca04 100755 --- a/target/executable/falco/falco +++ b/target/executable/falco/falco @@ -589,9 +589,9 @@ RUN echo "falco: \"$(falco -v | sed -n 's/^falco //p')\"" > /var/software_versio LABEL org.opencontainers.image.authors="Toni Verbeiren" LABEL org.opencontainers.image.description="Companion container for running component falco" -LABEL org.opencontainers.image.created="2024-09-27T09:55:25Z" +LABEL org.opencontainers.image.created="2024-10-03T12:50:51Z" LABEL org.opencontainers.image.source="https://github.com/smithlabcode/falco" -LABEL org.opencontainers.image.revision="237a2e3a229ee589d1ebbc282526f87398e26f58" +LABEL org.opencontainers.image.revision="0a0edcacb5368517d249210022363bd9265f1bf5" LABEL org.opencontainers.image.version="main" VIASHDOCKER diff --git a/target/executable/fastp/.config.vsh.yaml b/target/executable/fastp/.config.vsh.yaml index 55e65de1..eb3ba1ba 100644 --- a/target/executable/fastp/.config.vsh.yaml +++ b/target/executable/fastp/.config.vsh.yaml @@ -1083,9 +1083,9 @@ build_info: output: "target/executable/fastp" executable: "target/executable/fastp/fastp" viash_version: "0.9.0" - git_commit: "237a2e3a229ee589d1ebbc282526f87398e26f58" - git_remote: "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox" - git_tag: "v0.2.0-7-g237a2e3" + git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5" + git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox" + git_tag: "v0.2.0-8-g0a0edca" package_config: name: "biobox" version: "main" diff --git a/target/executable/fastp/fastp b/target/executable/fastp/fastp index 25993481..542f6fa8 100755 --- a/target/executable/fastp/fastp +++ b/target/executable/fastp/fastp @@ -1028,9 +1028,9 @@ RUN fastp --version 2>&1 | sed 's# #: "#;s#$#"#' > /var/software_versions.txt LABEL org.opencontainers.image.authors="Robrecht Cannoodt" LABEL org.opencontainers.image.description="Companion container for running component fastp" -LABEL org.opencontainers.image.created="2024-09-27T09:55:21Z" +LABEL org.opencontainers.image.created="2024-10-03T12:50:48Z" LABEL org.opencontainers.image.source="https://github.com/OpenGene/fastp" -LABEL org.opencontainers.image.revision="237a2e3a229ee589d1ebbc282526f87398e26f58" +LABEL org.opencontainers.image.revision="0a0edcacb5368517d249210022363bd9265f1bf5" LABEL org.opencontainers.image.version="main" VIASHDOCKER diff --git a/target/executable/fastqc/.config.vsh.yaml b/target/executable/fastqc/.config.vsh.yaml index 6f48a068..86b3342f 100644 --- a/target/executable/fastqc/.config.vsh.yaml +++ b/target/executable/fastqc/.config.vsh.yaml @@ -340,9 +340,9 @@ build_info: output: "target/executable/fastqc" executable: "target/executable/fastqc/fastqc" viash_version: "0.9.0" - git_commit: "237a2e3a229ee589d1ebbc282526f87398e26f58" - git_remote: "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox" - git_tag: "v0.2.0-7-g237a2e3" + git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5" + git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox" + git_tag: "v0.2.0-8-g0a0edca" package_config: name: "biobox" version: "main" diff --git a/target/executable/fastqc/fastqc b/target/executable/fastqc/fastqc index 98bcca0d..af8c4ea8 100755 --- a/target/executable/fastqc/fastqc +++ b/target/executable/fastqc/fastqc @@ -601,9 +601,9 @@ RUN echo "fastqc: $(fastqc --version | sed -n 's/^FastQC //p')" > /var/software_ LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo" LABEL org.opencontainers.image.description="Companion container for running component fastqc" -LABEL org.opencontainers.image.created="2024-09-27T09:55:10Z" +LABEL org.opencontainers.image.created="2024-10-03T12:50:37Z" LABEL org.opencontainers.image.source="https://github.com/s-andrews/FastQC" -LABEL org.opencontainers.image.revision="237a2e3a229ee589d1ebbc282526f87398e26f58" +LABEL org.opencontainers.image.revision="0a0edcacb5368517d249210022363bd9265f1bf5" LABEL org.opencontainers.image.version="main" VIASHDOCKER diff --git a/target/executable/featurecounts/.config.vsh.yaml b/target/executable/featurecounts/.config.vsh.yaml index a225b612..df0dcf46 100644 --- a/target/executable/featurecounts/.config.vsh.yaml +++ b/target/executable/featurecounts/.config.vsh.yaml @@ -645,9 +645,9 @@ build_info: output: "target/executable/featurecounts" executable: "target/executable/featurecounts/featurecounts" viash_version: "0.9.0" - git_commit: "237a2e3a229ee589d1ebbc282526f87398e26f58" - git_remote: "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox" - git_tag: "v0.2.0-7-g237a2e3" + git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5" + git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox" + git_tag: "v0.2.0-8-g0a0edca" package_config: name: "biobox" version: "main" diff --git a/target/executable/featurecounts/featurecounts b/target/executable/featurecounts/featurecounts index 5487ec16..9b93b90f 100755 --- a/target/executable/featurecounts/featurecounts +++ b/target/executable/featurecounts/featurecounts @@ -754,9 +754,9 @@ RUN featureCounts -v 2>&1 | sed 's/featureCounts v\([0-9.]*\)/featureCounts: \1/ LABEL org.opencontainers.image.authors="Sai Nirmayi Yasa" LABEL org.opencontainers.image.description="Companion container for running component featurecounts" -LABEL org.opencontainers.image.created="2024-09-27T09:55:14Z" +LABEL org.opencontainers.image.created="2024-10-03T12:50:41Z" LABEL org.opencontainers.image.source="https://github.com/ShiLab-Bioinformatics/subread" -LABEL org.opencontainers.image.revision="237a2e3a229ee589d1ebbc282526f87398e26f58" +LABEL org.opencontainers.image.revision="0a0edcacb5368517d249210022363bd9265f1bf5" LABEL org.opencontainers.image.version="main" VIASHDOCKER diff --git a/target/executable/fq_subsample/.config.vsh.yaml b/target/executable/fq_subsample/.config.vsh.yaml index 34d87d9e..0fd4d231 100644 --- a/target/executable/fq_subsample/.config.vsh.yaml +++ b/target/executable/fq_subsample/.config.vsh.yaml @@ -190,9 +190,9 @@ build_info: output: "target/executable/fq_subsample" executable: "target/executable/fq_subsample/fq_subsample" viash_version: "0.9.0" - git_commit: "237a2e3a229ee589d1ebbc282526f87398e26f58" - git_remote: "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox" - git_tag: "v0.2.0-7-g237a2e3" + git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5" + git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox" + git_tag: "v0.2.0-8-g0a0edca" package_config: name: "biobox" version: "main" diff --git a/target/executable/fq_subsample/fq_subsample b/target/executable/fq_subsample/fq_subsample index 035ad09a..47b58a80 100755 --- a/target/executable/fq_subsample/fq_subsample +++ b/target/executable/fq_subsample/fq_subsample @@ -493,9 +493,9 @@ mv target/release/fq /usr/local/bin/ && \ cd / && rm -rf /fq LABEL org.opencontainers.image.description="Companion container for running component fq_subsample" -LABEL org.opencontainers.image.created="2024-09-27T09:55:09Z" +LABEL org.opencontainers.image.created="2024-10-03T12:50:37Z" LABEL org.opencontainers.image.source="https://github.com/stjude-rust-labs/fq" -LABEL org.opencontainers.image.revision="237a2e3a229ee589d1ebbc282526f87398e26f58" +LABEL org.opencontainers.image.revision="0a0edcacb5368517d249210022363bd9265f1bf5" LABEL org.opencontainers.image.version="main" VIASHDOCKER diff --git a/target/executable/gffread/.config.vsh.yaml b/target/executable/gffread/.config.vsh.yaml index 7705f5a4..59d97201 100644 --- a/target/executable/gffread/.config.vsh.yaml +++ b/target/executable/gffread/.config.vsh.yaml @@ -685,9 +685,9 @@ build_info: output: "target/executable/gffread" executable: "target/executable/gffread/gffread" viash_version: "0.9.0" - git_commit: "237a2e3a229ee589d1ebbc282526f87398e26f58" - git_remote: "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox" - git_tag: "v0.2.0-7-g237a2e3" + git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5" + git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox" + git_tag: "v0.2.0-8-g0a0edca" package_config: name: "biobox" version: "main" diff --git a/target/executable/gffread/gffread b/target/executable/gffread/gffread index 20f773c7..a183e5a8 100755 --- a/target/executable/gffread/gffread +++ b/target/executable/gffread/gffread @@ -807,9 +807,9 @@ RUN echo "gffread: \"$(gffread --version 2>&1)\"" > /var/software_versions.txt LABEL org.opencontainers.image.authors="Emma Rousseau" LABEL org.opencontainers.image.description="Companion container for running component gffread" -LABEL org.opencontainers.image.created="2024-09-27T09:55:00Z" +LABEL org.opencontainers.image.created="2024-10-03T12:50:28Z" LABEL org.opencontainers.image.source="https://github.com/gpertea/gffread" -LABEL org.opencontainers.image.revision="237a2e3a229ee589d1ebbc282526f87398e26f58" +LABEL org.opencontainers.image.revision="0a0edcacb5368517d249210022363bd9265f1bf5" LABEL org.opencontainers.image.version="main" VIASHDOCKER diff --git a/target/executable/kallisto/kallisto_index/.config.vsh.yaml b/target/executable/kallisto/kallisto_index/.config.vsh.yaml index 5d1526fb..62097afc 100644 --- a/target/executable/kallisto/kallisto_index/.config.vsh.yaml +++ b/target/executable/kallisto/kallisto_index/.config.vsh.yaml @@ -218,9 +218,9 @@ build_info: output: "target/executable/kallisto/kallisto_index" executable: "target/executable/kallisto/kallisto_index/kallisto_index" viash_version: "0.9.0" - git_commit: "237a2e3a229ee589d1ebbc282526f87398e26f58" - git_remote: "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox" - git_tag: "v0.2.0-7-g237a2e3" + git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5" + git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox" + git_tag: "v0.2.0-8-g0a0edca" package_config: name: "biobox" version: "main" diff --git a/target/executable/kallisto/kallisto_index/kallisto_index b/target/executable/kallisto/kallisto_index/kallisto_index index c49826fc..1f6ca90b 100755 --- a/target/executable/kallisto/kallisto_index/kallisto_index +++ b/target/executable/kallisto/kallisto_index/kallisto_index @@ -506,9 +506,9 @@ tar -xzf kallisto_linux-v0.50.1.tar.gz && \ mv kallisto/kallisto /usr/local/bin/ LABEL org.opencontainers.image.description="Companion container for running component kallisto kallisto_index" -LABEL org.opencontainers.image.created="2024-09-27T09:55:18Z" +LABEL org.opencontainers.image.created="2024-10-03T12:50:45Z" LABEL org.opencontainers.image.source="https://github.com/pachterlab/kallisto" -LABEL org.opencontainers.image.revision="237a2e3a229ee589d1ebbc282526f87398e26f58" +LABEL org.opencontainers.image.revision="0a0edcacb5368517d249210022363bd9265f1bf5" LABEL org.opencontainers.image.version="main" VIASHDOCKER diff --git a/target/executable/kallisto/kallisto_quant/.config.vsh.yaml b/target/executable/kallisto/kallisto_quant/.config.vsh.yaml index 3787105f..a408705f 100644 --- a/target/executable/kallisto/kallisto_quant/.config.vsh.yaml +++ b/target/executable/kallisto/kallisto_quant/.config.vsh.yaml @@ -234,9 +234,9 @@ build_info: output: "target/executable/kallisto/kallisto_quant" executable: "target/executable/kallisto/kallisto_quant/kallisto_quant" viash_version: "0.9.0" - git_commit: "237a2e3a229ee589d1ebbc282526f87398e26f58" - git_remote: "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox" - git_tag: "v0.2.0-7-g237a2e3" + git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5" + git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox" + git_tag: "v0.2.0-8-g0a0edca" package_config: name: "biobox" version: "main" diff --git a/target/executable/kallisto/kallisto_quant/kallisto_quant b/target/executable/kallisto/kallisto_quant/kallisto_quant index e68e76ea..8cd88eb1 100755 --- a/target/executable/kallisto/kallisto_quant/kallisto_quant +++ b/target/executable/kallisto/kallisto_quant/kallisto_quant @@ -518,9 +518,9 @@ mv kallisto/kallisto /usr/local/bin/ RUN echo "kallisto: $(kallisto version | sed 's/kallisto, version //')" > /var/software_versions.txt LABEL org.opencontainers.image.description="Companion container for running component kallisto kallisto_quant" -LABEL org.opencontainers.image.created="2024-09-27T09:55:18Z" +LABEL org.opencontainers.image.created="2024-10-03T12:50:45Z" LABEL org.opencontainers.image.source="https://github.com/pachterlab/kallisto" -LABEL org.opencontainers.image.revision="237a2e3a229ee589d1ebbc282526f87398e26f58" +LABEL org.opencontainers.image.revision="0a0edcacb5368517d249210022363bd9265f1bf5" LABEL org.opencontainers.image.version="main" VIASHDOCKER diff --git a/target/executable/lofreq/lofreq_call/.config.vsh.yaml b/target/executable/lofreq/lofreq_call/.config.vsh.yaml index 7022e8f0..eda4e92c 100644 --- a/target/executable/lofreq/lofreq_call/.config.vsh.yaml +++ b/target/executable/lofreq/lofreq_call/.config.vsh.yaml @@ -507,9 +507,9 @@ build_info: output: "target/executable/lofreq/lofreq_call" executable: "target/executable/lofreq/lofreq_call/lofreq_call" viash_version: "0.9.0" - git_commit: "237a2e3a229ee589d1ebbc282526f87398e26f58" - git_remote: "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox" - git_tag: "v0.2.0-7-g237a2e3" + git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5" + git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox" + git_tag: "v0.2.0-8-g0a0edca" package_config: name: "biobox" version: "main" diff --git a/target/executable/lofreq/lofreq_call/lofreq_call b/target/executable/lofreq/lofreq_call/lofreq_call index a9854133..fb60a5af 100755 --- a/target/executable/lofreq/lofreq_call/lofreq_call +++ b/target/executable/lofreq/lofreq_call/lofreq_call @@ -656,9 +656,9 @@ echo "lofreq: $version" > /var/software_versions.txt LABEL org.opencontainers.image.authors="Kai Waldrant" LABEL org.opencontainers.image.description="Companion container for running component lofreq lofreq_call" -LABEL org.opencontainers.image.created="2024-09-27T09:55:13Z" +LABEL org.opencontainers.image.created="2024-10-03T12:50:41Z" LABEL org.opencontainers.image.source="https://github.com/viash-hub/biobox" -LABEL org.opencontainers.image.revision="237a2e3a229ee589d1ebbc282526f87398e26f58" +LABEL org.opencontainers.image.revision="0a0edcacb5368517d249210022363bd9265f1bf5" LABEL org.opencontainers.image.version="main" VIASHDOCKER diff --git a/target/executable/lofreq/lofreq_indelqual/.config.vsh.yaml b/target/executable/lofreq/lofreq_indelqual/.config.vsh.yaml index 214c5b0c..a6c12a30 100644 --- a/target/executable/lofreq/lofreq_indelqual/.config.vsh.yaml +++ b/target/executable/lofreq/lofreq_indelqual/.config.vsh.yaml @@ -215,9 +215,9 @@ build_info: output: "target/executable/lofreq/lofreq_indelqual" executable: "target/executable/lofreq/lofreq_indelqual/lofreq_indelqual" viash_version: "0.9.0" - git_commit: "237a2e3a229ee589d1ebbc282526f87398e26f58" - git_remote: "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox" - git_tag: "v0.2.0-7-g237a2e3" + git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5" + git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox" + git_tag: "v0.2.0-8-g0a0edca" package_config: name: "biobox" version: "main" diff --git a/target/executable/lofreq/lofreq_indelqual/lofreq_indelqual b/target/executable/lofreq/lofreq_indelqual/lofreq_indelqual index 1ae35448..f8c1748d 100755 --- a/target/executable/lofreq/lofreq_indelqual/lofreq_indelqual +++ b/target/executable/lofreq/lofreq_indelqual/lofreq_indelqual @@ -501,9 +501,9 @@ echo "lofreq: $version" > /var/software_versions.txt LABEL org.opencontainers.image.authors="Kai Waldrant" LABEL org.opencontainers.image.description="Companion container for running component lofreq lofreq_indelqual" -LABEL org.opencontainers.image.created="2024-09-27T09:55:13Z" +LABEL org.opencontainers.image.created="2024-10-03T12:50:40Z" LABEL org.opencontainers.image.source="https://github.com/viash-hub/biobox" -LABEL org.opencontainers.image.revision="237a2e3a229ee589d1ebbc282526f87398e26f58" +LABEL org.opencontainers.image.revision="0a0edcacb5368517d249210022363bd9265f1bf5" LABEL org.opencontainers.image.version="main" VIASHDOCKER diff --git a/target/executable/multiqc/.config.vsh.yaml b/target/executable/multiqc/.config.vsh.yaml index 90c21d15..b5c9f3cf 100644 --- a/target/executable/multiqc/.config.vsh.yaml +++ b/target/executable/multiqc/.config.vsh.yaml @@ -456,9 +456,9 @@ build_info: output: "target/executable/multiqc" executable: "target/executable/multiqc/multiqc" viash_version: "0.9.0" - git_commit: "237a2e3a229ee589d1ebbc282526f87398e26f58" - git_remote: "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox" - git_tag: "v0.2.0-7-g237a2e3" + git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5" + git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox" + git_tag: "v0.2.0-8-g0a0edca" package_config: name: "biobox" version: "main" diff --git a/target/executable/multiqc/multiqc b/target/executable/multiqc/multiqc index e7f0bc7d..37323654 100755 --- a/target/executable/multiqc/multiqc +++ b/target/executable/multiqc/multiqc @@ -637,9 +637,9 @@ RUN multiqc --version | sed 's/multiqc, version\s\(.*\)/multiqc: "\1"/' > /var/s LABEL org.opencontainers.image.authors="Dorien Roosen" LABEL org.opencontainers.image.description="Companion container for running component multiqc" -LABEL org.opencontainers.image.created="2024-09-27T09:55:24Z" +LABEL org.opencontainers.image.created="2024-10-03T12:50:51Z" LABEL org.opencontainers.image.source="https://github.com/viash-hub/biobox" -LABEL org.opencontainers.image.revision="237a2e3a229ee589d1ebbc282526f87398e26f58" +LABEL org.opencontainers.image.revision="0a0edcacb5368517d249210022363bd9265f1bf5" LABEL org.opencontainers.image.version="main" VIASHDOCKER diff --git a/target/executable/pear/.config.vsh.yaml b/target/executable/pear/.config.vsh.yaml index 66bf5b63..b07e980d 100644 --- a/target/executable/pear/.config.vsh.yaml +++ b/target/executable/pear/.config.vsh.yaml @@ -398,9 +398,9 @@ build_info: output: "target/executable/pear" executable: "target/executable/pear/pear" viash_version: "0.9.0" - git_commit: "237a2e3a229ee589d1ebbc282526f87398e26f58" - git_remote: "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox" - git_tag: "v0.2.0-7-g237a2e3" + git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5" + git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox" + git_tag: "v0.2.0-8-g0a0edca" package_config: name: "biobox" version: "main" diff --git a/target/executable/pear/pear b/target/executable/pear/pear index aef064ed..416ab513 100755 --- a/target/executable/pear/pear +++ b/target/executable/pear/pear @@ -597,9 +597,9 @@ echo "pear: $version" > /var/software_versions.txt LABEL org.opencontainers.image.authors="Kai Waldrant" LABEL org.opencontainers.image.description="Companion container for running component pear" -LABEL org.opencontainers.image.created="2024-09-27T09:55:05Z" +LABEL org.opencontainers.image.created="2024-10-03T12:50:32Z" LABEL org.opencontainers.image.source="https://github.com/tseemann/PEAR" -LABEL org.opencontainers.image.revision="237a2e3a229ee589d1ebbc282526f87398e26f58" +LABEL org.opencontainers.image.revision="0a0edcacb5368517d249210022363bd9265f1bf5" LABEL org.opencontainers.image.version="main" VIASHDOCKER diff --git a/target/executable/qualimap/qualimap_rnaseq/.config.vsh.yaml b/target/executable/qualimap/qualimap_rnaseq/.config.vsh.yaml index f54db9fd..dcfe173d 100644 --- a/target/executable/qualimap/qualimap_rnaseq/.config.vsh.yaml +++ b/target/executable/qualimap/qualimap_rnaseq/.config.vsh.yaml @@ -264,9 +264,9 @@ build_info: output: "target/executable/qualimap/qualimap_rnaseq" executable: "target/executable/qualimap/qualimap_rnaseq/qualimap_rnaseq" viash_version: "0.9.0" - git_commit: "237a2e3a229ee589d1ebbc282526f87398e26f58" - git_remote: "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox" - git_tag: "v0.2.0-7-g237a2e3" + git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5" + git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox" + git_tag: "v0.2.0-8-g0a0edca" package_config: name: "biobox" version: "main" diff --git a/target/executable/qualimap/qualimap_rnaseq/qualimap_rnaseq b/target/executable/qualimap/qualimap_rnaseq/qualimap_rnaseq index cdc5c7cb..8fa9f9a3 100755 --- a/target/executable/qualimap/qualimap_rnaseq/qualimap_rnaseq +++ b/target/executable/qualimap/qualimap_rnaseq/qualimap_rnaseq @@ -527,9 +527,9 @@ RUN echo QualiMap: $(qualimap 2>&1 | grep QualiMap | sed 's/^.*QualiMap//') > /v LABEL org.opencontainers.image.authors="Dorien Roosen" LABEL org.opencontainers.image.description="Companion container for running component qualimap qualimap_rnaseq" -LABEL org.opencontainers.image.created="2024-09-27T09:55:09Z" +LABEL org.opencontainers.image.created="2024-10-03T12:50:36Z" LABEL org.opencontainers.image.source="https://bitbucket.org/kokonech/qualimap/commits/branch/master" -LABEL org.opencontainers.image.revision="237a2e3a229ee589d1ebbc282526f87398e26f58" +LABEL org.opencontainers.image.revision="0a0edcacb5368517d249210022363bd9265f1bf5" LABEL org.opencontainers.image.version="main" VIASHDOCKER diff --git a/target/executable/rsem/rsem_calculate_expression/.config.vsh.yaml b/target/executable/rsem/rsem_calculate_expression/.config.vsh.yaml index 1d376426..482973df 100644 --- a/target/executable/rsem/rsem_calculate_expression/.config.vsh.yaml +++ b/target/executable/rsem/rsem_calculate_expression/.config.vsh.yaml @@ -852,9 +852,9 @@ build_info: output: "target/executable/rsem/rsem_calculate_expression" executable: "target/executable/rsem/rsem_calculate_expression/rsem_calculate_expression" viash_version: "0.9.0" - git_commit: "237a2e3a229ee589d1ebbc282526f87398e26f58" - git_remote: "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox" - git_tag: "v0.2.0-7-g237a2e3" + git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5" + git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox" + git_tag: "v0.2.0-8-g0a0edca" package_config: name: "biobox" version: "main" diff --git a/target/executable/rsem/rsem_calculate_expression/rsem_calculate_expression b/target/executable/rsem/rsem_calculate_expression/rsem_calculate_expression index 7672395c..6c53e620 100755 --- a/target/executable/rsem/rsem_calculate_expression/rsem_calculate_expression +++ b/target/executable/rsem/rsem_calculate_expression/rsem_calculate_expression @@ -991,9 +991,9 @@ echo "bowtie: `bowtie --version | grep -oP 'bowtie-align-s version \K\d+\.\d+\.\ echo "HISAT2: `hisat2 --version | grep -oP 'hisat2-align-s version \K\d+\.\d+\.\d+'`" >> /var/software_versions.txt LABEL org.opencontainers.image.description="Companion container for running component rsem rsem_calculate_expression" -LABEL org.opencontainers.image.created="2024-09-27T09:55:17Z" +LABEL org.opencontainers.image.created="2024-10-03T12:50:44Z" LABEL org.opencontainers.image.source="https://github.com/deweylab/RSEM" -LABEL org.opencontainers.image.revision="237a2e3a229ee589d1ebbc282526f87398e26f58" +LABEL org.opencontainers.image.revision="0a0edcacb5368517d249210022363bd9265f1bf5" LABEL org.opencontainers.image.version="main" VIASHDOCKER diff --git a/target/executable/rsem/rsem_prepare_reference/.config.vsh.yaml b/target/executable/rsem/rsem_prepare_reference/.config.vsh.yaml index 0393b7e3..229961b8 100644 --- a/target/executable/rsem/rsem_prepare_reference/.config.vsh.yaml +++ b/target/executable/rsem/rsem_prepare_reference/.config.vsh.yaml @@ -416,9 +416,9 @@ build_info: output: "target/executable/rsem/rsem_prepare_reference" executable: "target/executable/rsem/rsem_prepare_reference/rsem_prepare_reference" viash_version: "0.9.0" - git_commit: "237a2e3a229ee589d1ebbc282526f87398e26f58" - git_remote: "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox" - git_tag: "v0.2.0-7-g237a2e3" + git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5" + git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox" + git_tag: "v0.2.0-8-g0a0edca" package_config: name: "biobox" version: "main" diff --git a/target/executable/rsem/rsem_prepare_reference/rsem_prepare_reference b/target/executable/rsem/rsem_prepare_reference/rsem_prepare_reference index 56cd781f..05ad3c67 100755 --- a/target/executable/rsem/rsem_prepare_reference/rsem_prepare_reference +++ b/target/executable/rsem/rsem_prepare_reference/rsem_prepare_reference @@ -656,9 +656,9 @@ echo "HISAT2: `hisat2 --version | grep -oP 'hisat2-align-s version \K\d+\.\d+\.\ LABEL org.opencontainers.image.authors="Sai Nirmayi Yasa" LABEL org.opencontainers.image.description="Companion container for running component rsem rsem_prepare_reference" -LABEL org.opencontainers.image.created="2024-09-27T09:55:17Z" +LABEL org.opencontainers.image.created="2024-10-03T12:50:44Z" LABEL org.opencontainers.image.source="https://github.com/deweylab/RSEM" -LABEL org.opencontainers.image.revision="237a2e3a229ee589d1ebbc282526f87398e26f58" +LABEL org.opencontainers.image.revision="0a0edcacb5368517d249210022363bd9265f1bf5" LABEL org.opencontainers.image.version="main" VIASHDOCKER diff --git a/target/executable/salmon/salmon_index/.config.vsh.yaml b/target/executable/salmon/salmon_index/.config.vsh.yaml index 1dfbea9c..3843ecfc 100644 --- a/target/executable/salmon/salmon_index/.config.vsh.yaml +++ b/target/executable/salmon/salmon_index/.config.vsh.yaml @@ -277,9 +277,9 @@ build_info: output: "target/executable/salmon/salmon_index" executable: "target/executable/salmon/salmon_index/salmon_index" viash_version: "0.9.0" - git_commit: "237a2e3a229ee589d1ebbc282526f87398e26f58" - git_remote: "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox" - git_tag: "v0.2.0-7-g237a2e3" + git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5" + git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox" + git_tag: "v0.2.0-8-g0a0edca" package_config: name: "biobox" version: "main" diff --git a/target/executable/salmon/salmon_index/salmon_index b/target/executable/salmon/salmon_index/salmon_index index 0b42799e..fbb75b36 100755 --- a/target/executable/salmon/salmon_index/salmon_index +++ b/target/executable/salmon/salmon_index/salmon_index @@ -546,9 +546,9 @@ RUN salmon index -v 2>&1 | sed 's/salmon \([0-9.]*\)/salmon: \1/' > /var/softwar LABEL org.opencontainers.image.authors="Sai Nirmayi Yasa" LABEL org.opencontainers.image.description="Companion container for running component salmon salmon_index" -LABEL org.opencontainers.image.created="2024-09-27T09:55:23Z" +LABEL org.opencontainers.image.created="2024-10-03T12:50:50Z" LABEL org.opencontainers.image.source="https://github.com/COMBINE-lab/salmon" -LABEL org.opencontainers.image.revision="237a2e3a229ee589d1ebbc282526f87398e26f58" +LABEL org.opencontainers.image.revision="0a0edcacb5368517d249210022363bd9265f1bf5" LABEL org.opencontainers.image.version="main" VIASHDOCKER diff --git a/target/executable/salmon/salmon_quant/.config.vsh.yaml b/target/executable/salmon/salmon_quant/.config.vsh.yaml index 85a50fe4..a63cd0e4 100644 --- a/target/executable/salmon/salmon_quant/.config.vsh.yaml +++ b/target/executable/salmon/salmon_quant/.config.vsh.yaml @@ -1173,9 +1173,9 @@ build_info: output: "target/executable/salmon/salmon_quant" executable: "target/executable/salmon/salmon_quant/salmon_quant" viash_version: "0.9.0" - git_commit: "237a2e3a229ee589d1ebbc282526f87398e26f58" - git_remote: "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox" - git_tag: "v0.2.0-7-g237a2e3" + git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5" + git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox" + git_tag: "v0.2.0-8-g0a0edca" package_config: name: "biobox" version: "main" diff --git a/target/executable/salmon/salmon_quant/salmon_quant b/target/executable/salmon/salmon_quant/salmon_quant index 1526d3c1..fdd5f786 100755 --- a/target/executable/salmon/salmon_quant/salmon_quant +++ b/target/executable/salmon/salmon_quant/salmon_quant @@ -1168,9 +1168,9 @@ RUN salmon index -v 2>&1 | sed 's/salmon \([0-9.]*\)/salmon: \1/' > /var/softwar LABEL org.opencontainers.image.authors="Sai Nirmayi Yasa" LABEL org.opencontainers.image.description="Companion container for running component salmon salmon_quant" -LABEL org.opencontainers.image.created="2024-09-27T09:55:23Z" +LABEL org.opencontainers.image.created="2024-10-03T12:50:50Z" LABEL org.opencontainers.image.source="https://github.com/COMBINE-lab/salmon" -LABEL org.opencontainers.image.revision="237a2e3a229ee589d1ebbc282526f87398e26f58" +LABEL org.opencontainers.image.revision="0a0edcacb5368517d249210022363bd9265f1bf5" LABEL org.opencontainers.image.version="main" VIASHDOCKER diff --git a/target/executable/samtools/samtools_collate/.config.vsh.yaml b/target/executable/samtools/samtools_collate/.config.vsh.yaml index 9970ad43..bc7a902d 100644 --- a/target/executable/samtools/samtools_collate/.config.vsh.yaml +++ b/target/executable/samtools/samtools_collate/.config.vsh.yaml @@ -264,9 +264,9 @@ build_info: output: "target/executable/samtools/samtools_collate" executable: "target/executable/samtools/samtools_collate/samtools_collate" viash_version: "0.9.0" - git_commit: "237a2e3a229ee589d1ebbc282526f87398e26f58" - git_remote: "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox" - git_tag: "v0.2.0-7-g237a2e3" + git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5" + git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox" + git_tag: "v0.2.0-8-g0a0edca" package_config: name: "biobox" version: "main" diff --git a/target/executable/samtools/samtools_collate/samtools_collate b/target/executable/samtools/samtools_collate/samtools_collate index a4d74b9c..9e09622d 100755 --- a/target/executable/samtools/samtools_collate/samtools_collate +++ b/target/executable/samtools/samtools_collate/samtools_collate @@ -519,9 +519,9 @@ sed 's#Using ##;s# \([0-9\.]*\)$#: \1#' > /var/software_versions.txt LABEL org.opencontainers.image.authors="Emma Rousseau" LABEL org.opencontainers.image.description="Companion container for running component samtools samtools_collate" -LABEL org.opencontainers.image.created="2024-09-27T09:55:07Z" +LABEL org.opencontainers.image.created="2024-10-03T12:50:35Z" LABEL org.opencontainers.image.source="https://github.com/samtools/samtools" -LABEL org.opencontainers.image.revision="237a2e3a229ee589d1ebbc282526f87398e26f58" +LABEL org.opencontainers.image.revision="0a0edcacb5368517d249210022363bd9265f1bf5" LABEL org.opencontainers.image.version="main" VIASHDOCKER diff --git a/target/executable/samtools/samtools_faidx/.config.vsh.yaml b/target/executable/samtools/samtools_faidx/.config.vsh.yaml index 5e524238..da834893 100644 --- a/target/executable/samtools/samtools_faidx/.config.vsh.yaml +++ b/target/executable/samtools/samtools_faidx/.config.vsh.yaml @@ -243,9 +243,9 @@ build_info: output: "target/executable/samtools/samtools_faidx" executable: "target/executable/samtools/samtools_faidx/samtools_faidx" viash_version: "0.9.0" - git_commit: "237a2e3a229ee589d1ebbc282526f87398e26f58" - git_remote: "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox" - git_tag: "v0.2.0-7-g237a2e3" + git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5" + git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox" + git_tag: "v0.2.0-8-g0a0edca" package_config: name: "biobox" version: "main" diff --git a/target/executable/samtools/samtools_faidx/samtools_faidx b/target/executable/samtools/samtools_faidx/samtools_faidx index f2eca695..77c9969f 100755 --- a/target/executable/samtools/samtools_faidx/samtools_faidx +++ b/target/executable/samtools/samtools_faidx/samtools_faidx @@ -512,9 +512,9 @@ sed 's#Using ##;s# \([0-9\.]*\)$#: \1#' > /var/software_versions.txt LABEL org.opencontainers.image.authors="Emma Rousseau" LABEL org.opencontainers.image.description="Companion container for running component samtools samtools_faidx" -LABEL org.opencontainers.image.created="2024-09-27T09:55:07Z" +LABEL org.opencontainers.image.created="2024-10-03T12:50:34Z" LABEL org.opencontainers.image.source="https://github.com/samtools/samtools" -LABEL org.opencontainers.image.revision="237a2e3a229ee589d1ebbc282526f87398e26f58" +LABEL org.opencontainers.image.revision="0a0edcacb5368517d249210022363bd9265f1bf5" LABEL org.opencontainers.image.version="main" VIASHDOCKER diff --git a/target/executable/samtools/samtools_fasta/.config.vsh.yaml b/target/executable/samtools/samtools_fasta/.config.vsh.yaml index 6ef8fce2..c6bf9fe1 100644 --- a/target/executable/samtools/samtools_fasta/.config.vsh.yaml +++ b/target/executable/samtools/samtools_fasta/.config.vsh.yaml @@ -433,9 +433,9 @@ build_info: output: "target/executable/samtools/samtools_fasta" executable: "target/executable/samtools/samtools_fasta/samtools_fasta" viash_version: "0.9.0" - git_commit: "237a2e3a229ee589d1ebbc282526f87398e26f58" - git_remote: "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox" - git_tag: "v0.2.0-7-g237a2e3" + git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5" + git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox" + git_tag: "v0.2.0-8-g0a0edca" package_config: name: "biobox" version: "main" diff --git a/target/executable/samtools/samtools_fasta/samtools_fasta b/target/executable/samtools/samtools_fasta/samtools_fasta index 35c73c99..f801ba4e 100755 --- a/target/executable/samtools/samtools_fasta/samtools_fasta +++ b/target/executable/samtools/samtools_fasta/samtools_fasta @@ -625,9 +625,9 @@ sed 's#Using ##;s# \([0-9\.]*\)$#: \1#' > /var/software_versions.txt LABEL org.opencontainers.image.authors="Emma Rousseau" LABEL org.opencontainers.image.description="Companion container for running component samtools samtools_fasta" -LABEL org.opencontainers.image.created="2024-09-27T09:55:08Z" +LABEL org.opencontainers.image.created="2024-10-03T12:50:35Z" LABEL org.opencontainers.image.source="https://github.com/samtools/samtools" -LABEL org.opencontainers.image.revision="237a2e3a229ee589d1ebbc282526f87398e26f58" +LABEL org.opencontainers.image.revision="0a0edcacb5368517d249210022363bd9265f1bf5" LABEL org.opencontainers.image.version="main" VIASHDOCKER diff --git a/target/executable/samtools/samtools_fastq/.config.vsh.yaml b/target/executable/samtools/samtools_fastq/.config.vsh.yaml index 8b7b6acc..8bf718de 100644 --- a/target/executable/samtools/samtools_fastq/.config.vsh.yaml +++ b/target/executable/samtools/samtools_fastq/.config.vsh.yaml @@ -433,9 +433,9 @@ build_info: output: "target/executable/samtools/samtools_fastq" executable: "target/executable/samtools/samtools_fastq/samtools_fastq" viash_version: "0.9.0" - git_commit: "237a2e3a229ee589d1ebbc282526f87398e26f58" - git_remote: "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox" - git_tag: "v0.2.0-7-g237a2e3" + git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5" + git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox" + git_tag: "v0.2.0-8-g0a0edca" package_config: name: "biobox" version: "main" diff --git a/target/executable/samtools/samtools_fastq/samtools_fastq b/target/executable/samtools/samtools_fastq/samtools_fastq index b06536fe..5a6857e1 100755 --- a/target/executable/samtools/samtools_fastq/samtools_fastq +++ b/target/executable/samtools/samtools_fastq/samtools_fastq @@ -626,9 +626,9 @@ sed 's#Using ##;s# \([0-9\.]*\)$#: \1#' > /var/software_versions.txt LABEL org.opencontainers.image.authors="Emma Rousseau" LABEL org.opencontainers.image.description="Companion container for running component samtools samtools_fastq" -LABEL org.opencontainers.image.created="2024-09-27T09:55:07Z" +LABEL org.opencontainers.image.created="2024-10-03T12:50:34Z" LABEL org.opencontainers.image.source="https://github.com/samtools/samtools" -LABEL org.opencontainers.image.revision="237a2e3a229ee589d1ebbc282526f87398e26f58" +LABEL org.opencontainers.image.revision="0a0edcacb5368517d249210022363bd9265f1bf5" LABEL org.opencontainers.image.version="main" VIASHDOCKER diff --git a/target/executable/samtools/samtools_flagstat/.config.vsh.yaml b/target/executable/samtools/samtools_flagstat/.config.vsh.yaml index 4f776fe4..d827b560 100644 --- a/target/executable/samtools/samtools_flagstat/.config.vsh.yaml +++ b/target/executable/samtools/samtools_flagstat/.config.vsh.yaml @@ -173,9 +173,9 @@ build_info: output: "target/executable/samtools/samtools_flagstat" executable: "target/executable/samtools/samtools_flagstat/samtools_flagstat" viash_version: "0.9.0" - git_commit: "237a2e3a229ee589d1ebbc282526f87398e26f58" - git_remote: "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox" - git_tag: "v0.2.0-7-g237a2e3" + git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5" + git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox" + git_tag: "v0.2.0-8-g0a0edca" package_config: name: "biobox" version: "main" diff --git a/target/executable/samtools/samtools_flagstat/samtools_flagstat b/target/executable/samtools/samtools_flagstat/samtools_flagstat index 1f3bd3fa..993b835f 100755 --- a/target/executable/samtools/samtools_flagstat/samtools_flagstat +++ b/target/executable/samtools/samtools_flagstat/samtools_flagstat @@ -474,9 +474,9 @@ sed 's#Using ##;s# \([0-9\.]*\)$#: \1#' > /var/software_versions.txt LABEL org.opencontainers.image.authors="Emma Rousseau" LABEL org.opencontainers.image.description="Companion container for running component samtools samtools_flagstat" -LABEL org.opencontainers.image.created="2024-09-27T09:55:06Z" +LABEL org.opencontainers.image.created="2024-10-03T12:50:34Z" LABEL org.opencontainers.image.source="https://github.com/samtools/samtools" -LABEL org.opencontainers.image.revision="237a2e3a229ee589d1ebbc282526f87398e26f58" +LABEL org.opencontainers.image.revision="0a0edcacb5368517d249210022363bd9265f1bf5" LABEL org.opencontainers.image.version="main" VIASHDOCKER diff --git a/target/executable/samtools/samtools_idxstats/.config.vsh.yaml b/target/executable/samtools/samtools_idxstats/.config.vsh.yaml index 0db9d5a1..799987aa 100644 --- a/target/executable/samtools/samtools_idxstats/.config.vsh.yaml +++ b/target/executable/samtools/samtools_idxstats/.config.vsh.yaml @@ -183,9 +183,9 @@ build_info: output: "target/executable/samtools/samtools_idxstats" executable: "target/executable/samtools/samtools_idxstats/samtools_idxstats" viash_version: "0.9.0" - git_commit: "237a2e3a229ee589d1ebbc282526f87398e26f58" - git_remote: "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox" - git_tag: "v0.2.0-7-g237a2e3" + git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5" + git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox" + git_tag: "v0.2.0-8-g0a0edca" package_config: name: "biobox" version: "main" diff --git a/target/executable/samtools/samtools_idxstats/samtools_idxstats b/target/executable/samtools/samtools_idxstats/samtools_idxstats index 3e6cbee0..a1eefa05 100755 --- a/target/executable/samtools/samtools_idxstats/samtools_idxstats +++ b/target/executable/samtools/samtools_idxstats/samtools_idxstats @@ -478,9 +478,9 @@ sed 's#Using ##;s# \([0-9\.]*\)$#: \1#' > /var/software_versions.txt LABEL org.opencontainers.image.authors="Emma Rousseau" LABEL org.opencontainers.image.description="Companion container for running component samtools samtools_idxstats" -LABEL org.opencontainers.image.created="2024-09-27T09:55:06Z" +LABEL org.opencontainers.image.created="2024-10-03T12:50:33Z" LABEL org.opencontainers.image.source="https://github.com/samtools/samtools" -LABEL org.opencontainers.image.revision="237a2e3a229ee589d1ebbc282526f87398e26f58" +LABEL org.opencontainers.image.revision="0a0edcacb5368517d249210022363bd9265f1bf5" LABEL org.opencontainers.image.version="main" VIASHDOCKER diff --git a/target/executable/samtools/samtools_index/.config.vsh.yaml b/target/executable/samtools/samtools_index/.config.vsh.yaml index 09a1ed31..5827b1c6 100644 --- a/target/executable/samtools/samtools_index/.config.vsh.yaml +++ b/target/executable/samtools/samtools_index/.config.vsh.yaml @@ -189,9 +189,9 @@ build_info: output: "target/executable/samtools/samtools_index" executable: "target/executable/samtools/samtools_index/samtools_index" viash_version: "0.9.0" - git_commit: "237a2e3a229ee589d1ebbc282526f87398e26f58" - git_remote: "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox" - git_tag: "v0.2.0-7-g237a2e3" + git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5" + git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox" + git_tag: "v0.2.0-8-g0a0edca" package_config: name: "biobox" version: "main" diff --git a/target/executable/samtools/samtools_index/samtools_index b/target/executable/samtools/samtools_index/samtools_index index 8b3997a0..d86196f8 100755 --- a/target/executable/samtools/samtools_index/samtools_index +++ b/target/executable/samtools/samtools_index/samtools_index @@ -485,9 +485,9 @@ sed 's#Using ##;s# \([0-9\.]*\)$#: \1#' > /var/software_versions.txt LABEL org.opencontainers.image.authors="Emma Rousseau" LABEL org.opencontainers.image.description="Companion container for running component samtools samtools_index" -LABEL org.opencontainers.image.created="2024-09-27T09:55:05Z" +LABEL org.opencontainers.image.created="2024-10-03T12:50:33Z" LABEL org.opencontainers.image.source="https://github.com/samtools/samtools" -LABEL org.opencontainers.image.revision="237a2e3a229ee589d1ebbc282526f87398e26f58" +LABEL org.opencontainers.image.revision="0a0edcacb5368517d249210022363bd9265f1bf5" LABEL org.opencontainers.image.version="main" VIASHDOCKER diff --git a/target/executable/samtools/samtools_sort/.config.vsh.yaml b/target/executable/samtools/samtools_sort/.config.vsh.yaml index 06e8b354..c223a3ef 100644 --- a/target/executable/samtools/samtools_sort/.config.vsh.yaml +++ b/target/executable/samtools/samtools_sort/.config.vsh.yaml @@ -332,9 +332,9 @@ build_info: output: "target/executable/samtools/samtools_sort" executable: "target/executable/samtools/samtools_sort/samtools_sort" viash_version: "0.9.0" - git_commit: "237a2e3a229ee589d1ebbc282526f87398e26f58" - git_remote: "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox" - git_tag: "v0.2.0-7-g237a2e3" + git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5" + git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox" + git_tag: "v0.2.0-8-g0a0edca" package_config: name: "biobox" version: "main" diff --git a/target/executable/samtools/samtools_sort/samtools_sort b/target/executable/samtools/samtools_sort/samtools_sort index d5efe346..0fb8cf08 100755 --- a/target/executable/samtools/samtools_sort/samtools_sort +++ b/target/executable/samtools/samtools_sort/samtools_sort @@ -556,9 +556,9 @@ sed 's#Using ##;s# \([0-9\.]*\)$#: \1#' > /var/software_versions.txt LABEL org.opencontainers.image.authors="Emma Rousseau" LABEL org.opencontainers.image.description="Companion container for running component samtools samtools_sort" -LABEL org.opencontainers.image.created="2024-09-27T09:55:08Z" +LABEL org.opencontainers.image.created="2024-10-03T12:50:35Z" LABEL org.opencontainers.image.source="https://github.com/samtools/samtools" -LABEL org.opencontainers.image.revision="237a2e3a229ee589d1ebbc282526f87398e26f58" +LABEL org.opencontainers.image.revision="0a0edcacb5368517d249210022363bd9265f1bf5" LABEL org.opencontainers.image.version="main" VIASHDOCKER diff --git a/target/executable/samtools/samtools_stats/.config.vsh.yaml b/target/executable/samtools/samtools_stats/.config.vsh.yaml index 6ddd1b64..964f5aaf 100644 --- a/target/executable/samtools/samtools_stats/.config.vsh.yaml +++ b/target/executable/samtools/samtools_stats/.config.vsh.yaml @@ -401,9 +401,9 @@ build_info: output: "target/executable/samtools/samtools_stats" executable: "target/executable/samtools/samtools_stats/samtools_stats" viash_version: "0.9.0" - git_commit: "237a2e3a229ee589d1ebbc282526f87398e26f58" - git_remote: "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox" - git_tag: "v0.2.0-7-g237a2e3" + git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5" + git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox" + git_tag: "v0.2.0-8-g0a0edca" package_config: name: "biobox" version: "main" diff --git a/target/executable/samtools/samtools_stats/samtools_stats b/target/executable/samtools/samtools_stats/samtools_stats index 89cc8bdd..6be765f3 100755 --- a/target/executable/samtools/samtools_stats/samtools_stats +++ b/target/executable/samtools/samtools_stats/samtools_stats @@ -575,9 +575,9 @@ sed 's#Using ##;s# \([0-9\.]*\)$#: \1#' > /var/software_versions.txt LABEL org.opencontainers.image.authors="Emma Rousseau" LABEL org.opencontainers.image.description="Companion container for running component samtools samtools_stats" -LABEL org.opencontainers.image.created="2024-09-27T09:55:08Z" +LABEL org.opencontainers.image.created="2024-10-03T12:50:36Z" LABEL org.opencontainers.image.source="https://github.com/samtools/samtools" -LABEL org.opencontainers.image.revision="237a2e3a229ee589d1ebbc282526f87398e26f58" +LABEL org.opencontainers.image.revision="0a0edcacb5368517d249210022363bd9265f1bf5" LABEL org.opencontainers.image.version="main" VIASHDOCKER diff --git a/target/executable/samtools/samtools_view/.config.vsh.yaml b/target/executable/samtools/samtools_view/.config.vsh.yaml index c7c9800b..a4294746 100644 --- a/target/executable/samtools/samtools_view/.config.vsh.yaml +++ b/target/executable/samtools/samtools_view/.config.vsh.yaml @@ -665,9 +665,9 @@ build_info: output: "target/executable/samtools/samtools_view" executable: "target/executable/samtools/samtools_view/samtools_view" viash_version: "0.9.0" - git_commit: "237a2e3a229ee589d1ebbc282526f87398e26f58" - git_remote: "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox" - git_tag: "v0.2.0-7-g237a2e3" + git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5" + git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox" + git_tag: "v0.2.0-8-g0a0edca" package_config: name: "biobox" version: "main" diff --git a/target/executable/samtools/samtools_view/samtools_view b/target/executable/samtools/samtools_view/samtools_view index 5ca3d4a7..db56ed73 100755 --- a/target/executable/samtools/samtools_view/samtools_view +++ b/target/executable/samtools/samtools_view/samtools_view @@ -825,9 +825,9 @@ sed 's#Using ##;s# \([0-9\.]*\)$#: \1#' > /var/software_versions.txt LABEL org.opencontainers.image.authors="Emma Rousseau" LABEL org.opencontainers.image.description="Companion container for running component samtools samtools_view" -LABEL org.opencontainers.image.created="2024-09-27T09:55:06Z" +LABEL org.opencontainers.image.created="2024-10-03T12:50:33Z" LABEL org.opencontainers.image.source="https://github.com/samtools/samtools" -LABEL org.opencontainers.image.revision="237a2e3a229ee589d1ebbc282526f87398e26f58" +LABEL org.opencontainers.image.revision="0a0edcacb5368517d249210022363bd9265f1bf5" LABEL org.opencontainers.image.version="main" VIASHDOCKER diff --git a/target/executable/seqtk/seqtk_sample/.config.vsh.yaml b/target/executable/seqtk/seqtk_sample/.config.vsh.yaml index 94742f67..87642105 100644 --- a/target/executable/seqtk/seqtk_sample/.config.vsh.yaml +++ b/target/executable/seqtk/seqtk_sample/.config.vsh.yaml @@ -173,9 +173,9 @@ build_info: output: "target/executable/seqtk/seqtk_sample" executable: "target/executable/seqtk/seqtk_sample/seqtk_sample" viash_version: "0.9.0" - git_commit: "237a2e3a229ee589d1ebbc282526f87398e26f58" - git_remote: "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox" - git_tag: "v0.2.0-7-g237a2e3" + git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5" + git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox" + git_tag: "v0.2.0-8-g0a0edca" package_config: name: "biobox" version: "main" diff --git a/target/executable/seqtk/seqtk_sample/seqtk_sample b/target/executable/seqtk/seqtk_sample/seqtk_sample index f4d591fe..c3b8329d 100755 --- a/target/executable/seqtk/seqtk_sample/seqtk_sample +++ b/target/executable/seqtk/seqtk_sample/seqtk_sample @@ -481,9 +481,9 @@ FROM quay.io/biocontainers/seqtk:1.4--he4a0461_2 ENTRYPOINT [] LABEL org.opencontainers.image.authors="Jakub Majercik" LABEL org.opencontainers.image.description="Companion container for running component seqtk seqtk_sample" -LABEL org.opencontainers.image.created="2024-09-27T09:55:26Z" +LABEL org.opencontainers.image.created="2024-10-03T12:50:53Z" LABEL org.opencontainers.image.source="https://github.com/lh3/seqtk/tree/v1.4" -LABEL org.opencontainers.image.revision="237a2e3a229ee589d1ebbc282526f87398e26f58" +LABEL org.opencontainers.image.revision="0a0edcacb5368517d249210022363bd9265f1bf5" LABEL org.opencontainers.image.version="main" VIASHDOCKER diff --git a/target/executable/seqtk/seqtk_subseq/.config.vsh.yaml b/target/executable/seqtk/seqtk_subseq/.config.vsh.yaml index 409f32e5..4d170589 100644 --- a/target/executable/seqtk/seqtk_subseq/.config.vsh.yaml +++ b/target/executable/seqtk/seqtk_subseq/.config.vsh.yaml @@ -196,9 +196,9 @@ build_info: output: "target/executable/seqtk/seqtk_subseq" executable: "target/executable/seqtk/seqtk_subseq/seqtk_subseq" viash_version: "0.9.0" - git_commit: "237a2e3a229ee589d1ebbc282526f87398e26f58" - git_remote: "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox" - git_tag: "v0.2.0-7-g237a2e3" + git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5" + git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox" + git_tag: "v0.2.0-8-g0a0edca" package_config: name: "biobox" version: "main" diff --git a/target/executable/seqtk/seqtk_subseq/seqtk_subseq b/target/executable/seqtk/seqtk_subseq/seqtk_subseq index 6b8fe6bd..077ce1d2 100755 --- a/target/executable/seqtk/seqtk_subseq/seqtk_subseq +++ b/target/executable/seqtk/seqtk_subseq/seqtk_subseq @@ -491,9 +491,9 @@ RUN echo $(echo $(seqtk 2>&1) | sed -n 's/.*\(Version: [^ ]*\).*/\1/p') > /var/s LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo" LABEL org.opencontainers.image.description="Companion container for running component seqtk seqtk_subseq" -LABEL org.opencontainers.image.created="2024-09-27T09:55:26Z" +LABEL org.opencontainers.image.created="2024-10-03T12:50:53Z" LABEL org.opencontainers.image.source="https://github.com/lh3/seqtk/tree/v1.4" -LABEL org.opencontainers.image.revision="237a2e3a229ee589d1ebbc282526f87398e26f58" +LABEL org.opencontainers.image.revision="0a0edcacb5368517d249210022363bd9265f1bf5" LABEL org.opencontainers.image.version="main" VIASHDOCKER diff --git a/target/executable/sortmerna/.config.vsh.yaml b/target/executable/sortmerna/.config.vsh.yaml index a0d89260..0cb8b64d 100644 --- a/target/executable/sortmerna/.config.vsh.yaml +++ b/target/executable/sortmerna/.config.vsh.yaml @@ -591,9 +591,9 @@ build_info: output: "target/executable/sortmerna" executable: "target/executable/sortmerna/sortmerna" viash_version: "0.9.0" - git_commit: "237a2e3a229ee589d1ebbc282526f87398e26f58" - git_remote: "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox" - git_tag: "v0.2.0-7-g237a2e3" + git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5" + git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox" + git_tag: "v0.2.0-8-g0a0edca" package_config: name: "biobox" version: "main" diff --git a/target/executable/sortmerna/sortmerna b/target/executable/sortmerna/sortmerna index 1cb3d892..260de9c4 100755 --- a/target/executable/sortmerna/sortmerna +++ b/target/executable/sortmerna/sortmerna @@ -744,9 +744,9 @@ wget --no-check-certificate https://github.com/sortmerna/sortmerna/releases/down bash sortmerna-4.3.6-Linux.sh --skip-license LABEL org.opencontainers.image.description="Companion container for running component sortmerna" -LABEL org.opencontainers.image.created="2024-09-27T09:55:22Z" +LABEL org.opencontainers.image.created="2024-10-03T12:50:49Z" LABEL org.opencontainers.image.source="https://github.com/sortmerna/sortmerna" -LABEL org.opencontainers.image.revision="237a2e3a229ee589d1ebbc282526f87398e26f58" +LABEL org.opencontainers.image.revision="0a0edcacb5368517d249210022363bd9265f1bf5" LABEL org.opencontainers.image.version="main" VIASHDOCKER diff --git a/target/executable/star/star_align_reads/.config.vsh.yaml b/target/executable/star/star_align_reads/.config.vsh.yaml index 5edac4be..0448b687 100644 --- a/target/executable/star/star_align_reads/.config.vsh.yaml +++ b/target/executable/star/star_align_reads/.config.vsh.yaml @@ -2663,9 +2663,9 @@ build_info: output: "target/executable/star/star_align_reads" executable: "target/executable/star/star_align_reads/star_align_reads" viash_version: "0.9.0" - git_commit: "237a2e3a229ee589d1ebbc282526f87398e26f58" - git_remote: "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox" - git_tag: "v0.2.0-7-g237a2e3" + git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5" + git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox" + git_tag: "v0.2.0-8-g0a0edca" package_config: name: "biobox" version: "main" diff --git a/target/executable/star/star_align_reads/star_align_reads b/target/executable/star/star_align_reads/star_align_reads index ef1fe520..fc25134b 100755 --- a/target/executable/star/star_align_reads/star_align_reads +++ b/target/executable/star/star_align_reads/star_align_reads @@ -1920,9 +1920,9 @@ RUN STAR --version | sed 's#\(.*\)#star: "\1"#' > /var/software_versions.txt LABEL org.opencontainers.image.authors="Angela Oliveira Pisco, Robrecht Cannoodt" LABEL org.opencontainers.image.description="Companion container for running component star star_align_reads" -LABEL org.opencontainers.image.created="2024-09-27T09:55:15Z" +LABEL org.opencontainers.image.created="2024-10-03T12:50:42Z" LABEL org.opencontainers.image.source="https://github.com/alexdobin/STAR" -LABEL org.opencontainers.image.revision="237a2e3a229ee589d1ebbc282526f87398e26f58" +LABEL org.opencontainers.image.revision="0a0edcacb5368517d249210022363bd9265f1bf5" LABEL org.opencontainers.image.version="main" VIASHDOCKER diff --git a/target/executable/star/star_genome_generate/.config.vsh.yaml b/target/executable/star/star_genome_generate/.config.vsh.yaml index 491619f0..644b0c12 100644 --- a/target/executable/star/star_genome_generate/.config.vsh.yaml +++ b/target/executable/star/star_genome_generate/.config.vsh.yaml @@ -333,9 +333,9 @@ build_info: output: "target/executable/star/star_genome_generate" executable: "target/executable/star/star_genome_generate/star_genome_generate" viash_version: "0.9.0" - git_commit: "237a2e3a229ee589d1ebbc282526f87398e26f58" - git_remote: "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox" - git_tag: "v0.2.0-7-g237a2e3" + git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5" + git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox" + git_tag: "v0.2.0-8-g0a0edca" package_config: name: "biobox" version: "main" diff --git a/target/executable/star/star_genome_generate/star_genome_generate b/target/executable/star/star_genome_generate/star_genome_generate index 4b7e8f54..536008d3 100755 --- a/target/executable/star/star_genome_generate/star_genome_generate +++ b/target/executable/star/star_genome_generate/star_genome_generate @@ -577,9 +577,9 @@ RUN STAR --version | sed 's#\(.*\)#star: "\1"#' > /var/software_versions.txt LABEL org.opencontainers.image.authors="Sai Nirmayi Yasa" LABEL org.opencontainers.image.description="Companion container for running component star star_genome_generate" -LABEL org.opencontainers.image.created="2024-09-27T09:55:14Z" +LABEL org.opencontainers.image.created="2024-10-03T12:50:41Z" LABEL org.opencontainers.image.source="https://github.com/alexdobin/STAR" -LABEL org.opencontainers.image.revision="237a2e3a229ee589d1ebbc282526f87398e26f58" +LABEL org.opencontainers.image.revision="0a0edcacb5368517d249210022363bd9265f1bf5" LABEL org.opencontainers.image.version="main" VIASHDOCKER diff --git a/target/executable/trimgalore/.config.vsh.yaml b/target/executable/trimgalore/.config.vsh.yaml index 6570872a..5b17cdea 100644 --- a/target/executable/trimgalore/.config.vsh.yaml +++ b/target/executable/trimgalore/.config.vsh.yaml @@ -770,9 +770,9 @@ build_info: output: "target/executable/trimgalore" executable: "target/executable/trimgalore/trimgalore" viash_version: "0.9.0" - git_commit: "237a2e3a229ee589d1ebbc282526f87398e26f58" - git_remote: "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox" - git_tag: "v0.2.0-7-g237a2e3" + git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5" + git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox" + git_tag: "v0.2.0-8-g0a0edca" package_config: name: "biobox" version: "main" diff --git a/target/executable/trimgalore/trimgalore b/target/executable/trimgalore/trimgalore index 4a6b1d18..e7ce0dfb 100755 --- a/target/executable/trimgalore/trimgalore +++ b/target/executable/trimgalore/trimgalore @@ -881,9 +881,9 @@ RUN echo "TrimGalore: `trim_galore --version | sed -n 's/.*version\s\+\([0-9]\+\ LABEL org.opencontainers.image.authors="Sai Nirmayi Yasa" LABEL org.opencontainers.image.description="Companion container for running component trimgalore" -LABEL org.opencontainers.image.created="2024-09-27T09:55:20Z" +LABEL org.opencontainers.image.created="2024-10-03T12:50:47Z" LABEL org.opencontainers.image.source="https://github.com/FelixKrueger/TrimGalore" -LABEL org.opencontainers.image.revision="237a2e3a229ee589d1ebbc282526f87398e26f58" +LABEL org.opencontainers.image.revision="0a0edcacb5368517d249210022363bd9265f1bf5" LABEL org.opencontainers.image.version="main" VIASHDOCKER diff --git a/target/executable/umi_tools/umi_tools_dedup/.config.vsh.yaml b/target/executable/umi_tools/umi_tools_dedup/.config.vsh.yaml index 4cfeb41f..452956f8 100644 --- a/target/executable/umi_tools/umi_tools_dedup/.config.vsh.yaml +++ b/target/executable/umi_tools/umi_tools_dedup/.config.vsh.yaml @@ -611,9 +611,9 @@ build_info: output: "target/executable/umi_tools/umi_tools_dedup" executable: "target/executable/umi_tools/umi_tools_dedup/umi_tools_dedup" viash_version: "0.9.0" - git_commit: "237a2e3a229ee589d1ebbc282526f87398e26f58" - git_remote: "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox" - git_tag: "v0.2.0-7-g237a2e3" + git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5" + git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox" + git_tag: "v0.2.0-8-g0a0edca" package_config: name: "biobox" version: "main" diff --git a/target/executable/umi_tools/umi_tools_dedup/umi_tools_dedup b/target/executable/umi_tools/umi_tools_dedup/umi_tools_dedup index b9f95f5a..cd89c57b 100755 --- a/target/executable/umi_tools/umi_tools_dedup/umi_tools_dedup +++ b/target/executable/umi_tools/umi_tools_dedup/umi_tools_dedup @@ -770,9 +770,9 @@ RUN umi_tools -v | sed 's/ version//g' > /var/software_versions.txt LABEL org.opencontainers.image.authors="Emma Rousseau" LABEL org.opencontainers.image.description="Companion container for running component umi_tools umi_tools_dedup" -LABEL org.opencontainers.image.created="2024-09-27T09:55:11Z" +LABEL org.opencontainers.image.created="2024-10-03T12:50:38Z" LABEL org.opencontainers.image.source="https://github.com/CGATOxford/UMI-tools" -LABEL org.opencontainers.image.revision="237a2e3a229ee589d1ebbc282526f87398e26f58" +LABEL org.opencontainers.image.revision="0a0edcacb5368517d249210022363bd9265f1bf5" LABEL org.opencontainers.image.version="main" VIASHDOCKER diff --git a/target/executable/umi_tools/umi_tools_extract/.config.vsh.yaml b/target/executable/umi_tools/umi_tools_extract/.config.vsh.yaml index 28322b51..d76af757 100644 --- a/target/executable/umi_tools/umi_tools_extract/.config.vsh.yaml +++ b/target/executable/umi_tools/umi_tools_extract/.config.vsh.yaml @@ -449,9 +449,9 @@ build_info: output: "target/executable/umi_tools/umi_tools_extract" executable: "target/executable/umi_tools/umi_tools_extract/umi_tools_extract" viash_version: "0.9.0" - git_commit: "237a2e3a229ee589d1ebbc282526f87398e26f58" - git_remote: "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox" - git_tag: "v0.2.0-7-g237a2e3" + git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5" + git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox" + git_tag: "v0.2.0-8-g0a0edca" package_config: name: "biobox" version: "main" diff --git a/target/executable/umi_tools/umi_tools_extract/umi_tools_extract b/target/executable/umi_tools/umi_tools_extract/umi_tools_extract index 7e813033..fae641d4 100755 --- a/target/executable/umi_tools/umi_tools_extract/umi_tools_extract +++ b/target/executable/umi_tools/umi_tools_extract/umi_tools_extract @@ -637,9 +637,9 @@ ENTRYPOINT [] RUN umi_tools -v | sed 's/ version//g' > /var/software_versions.txt LABEL org.opencontainers.image.description="Companion container for running component umi_tools umi_tools_extract" -LABEL org.opencontainers.image.created="2024-09-27T09:55:10Z" +LABEL org.opencontainers.image.created="2024-10-03T12:50:37Z" LABEL org.opencontainers.image.source="https://github.com/CGATOxford/UMI-tools" -LABEL org.opencontainers.image.revision="237a2e3a229ee589d1ebbc282526f87398e26f58" +LABEL org.opencontainers.image.revision="0a0edcacb5368517d249210022363bd9265f1bf5" LABEL org.opencontainers.image.version="main" VIASHDOCKER diff --git a/target/executable/umi_tools/umi_tools_prepareforrsem/.config.vsh.yaml b/target/executable/umi_tools/umi_tools_prepareforrsem/.config.vsh.yaml index 4f097811..0e380819 100644 --- a/target/executable/umi_tools/umi_tools_prepareforrsem/.config.vsh.yaml +++ b/target/executable/umi_tools/umi_tools_prepareforrsem/.config.vsh.yaml @@ -256,9 +256,9 @@ build_info: output: "target/executable/umi_tools/umi_tools_prepareforrsem" executable: "target/executable/umi_tools/umi_tools_prepareforrsem/umi_tools_prepareforrsem" viash_version: "0.9.0" - git_commit: "237a2e3a229ee589d1ebbc282526f87398e26f58" - git_remote: "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox" - git_tag: "v0.2.0-7-g237a2e3" + git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5" + git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox" + git_tag: "v0.2.0-8-g0a0edca" package_config: name: "biobox" version: "main" diff --git a/target/executable/umi_tools/umi_tools_prepareforrsem/umi_tools_prepareforrsem b/target/executable/umi_tools/umi_tools_prepareforrsem/umi_tools_prepareforrsem index e2215a12..927a7be9 100755 --- a/target/executable/umi_tools/umi_tools_prepareforrsem/umi_tools_prepareforrsem +++ b/target/executable/umi_tools/umi_tools_prepareforrsem/umi_tools_prepareforrsem @@ -519,9 +519,9 @@ ENTRYPOINT [] RUN umi_tools -v | sed 's/ version//g' > /var/software_versions.txt LABEL org.opencontainers.image.description="Companion container for running component umi_tools umi_tools_prepareforrsem" -LABEL org.opencontainers.image.created="2024-09-27T09:55:10Z" +LABEL org.opencontainers.image.created="2024-10-03T12:50:38Z" LABEL org.opencontainers.image.source="https://github.com/CGATOxford/UMI-tools" -LABEL org.opencontainers.image.revision="237a2e3a229ee589d1ebbc282526f87398e26f58" +LABEL org.opencontainers.image.revision="0a0edcacb5368517d249210022363bd9265f1bf5" LABEL org.opencontainers.image.version="main" VIASHDOCKER diff --git a/target/nextflow/agat/agat_convert_bed2gff/.config.vsh.yaml b/target/nextflow/agat/agat_convert_bed2gff/.config.vsh.yaml index 78df1b83..1dd9a2ca 100644 --- a/target/nextflow/agat/agat_convert_bed2gff/.config.vsh.yaml +++ b/target/nextflow/agat/agat_convert_bed2gff/.config.vsh.yaml @@ -235,9 +235,9 @@ build_info: output: "target/nextflow/agat/agat_convert_bed2gff" executable: "target/nextflow/agat/agat_convert_bed2gff/main.nf" viash_version: "0.9.0" - git_commit: "237a2e3a229ee589d1ebbc282526f87398e26f58" - git_remote: "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox" - git_tag: "v0.2.0-7-g237a2e3" + git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5" + git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox" + git_tag: "v0.2.0-8-g0a0edca" package_config: name: "biobox" version: "main" diff --git a/target/nextflow/agat/agat_convert_bed2gff/main.nf b/target/nextflow/agat/agat_convert_bed2gff/main.nf index dd066116..478ceb2c 100644 --- a/target/nextflow/agat/agat_convert_bed2gff/main.nf +++ b/target/nextflow/agat/agat_convert_bed2gff/main.nf @@ -3092,9 +3092,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/agat/agat_convert_bed2gff", "viash_version" : "0.9.0", - "git_commit" : "237a2e3a229ee589d1ebbc282526f87398e26f58", - "git_remote" : "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-7-g237a2e3" + "git_commit" : "0a0edcacb5368517d249210022363bd9265f1bf5", + "git_remote" : "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-8-g0a0edca" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/agat/agat_convert_embl2gff/.config.vsh.yaml b/target/nextflow/agat/agat_convert_embl2gff/.config.vsh.yaml index fe4a6e5d..d86f9123 100644 --- a/target/nextflow/agat/agat_convert_embl2gff/.config.vsh.yaml +++ b/target/nextflow/agat/agat_convert_embl2gff/.config.vsh.yaml @@ -225,9 +225,9 @@ build_info: output: "target/nextflow/agat/agat_convert_embl2gff" executable: "target/nextflow/agat/agat_convert_embl2gff/main.nf" viash_version: "0.9.0" - git_commit: "237a2e3a229ee589d1ebbc282526f87398e26f58" - git_remote: "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox" - git_tag: "v0.2.0-7-g237a2e3" + git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5" + git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox" + git_tag: "v0.2.0-8-g0a0edca" package_config: name: "biobox" version: "main" diff --git a/target/nextflow/agat/agat_convert_embl2gff/main.nf b/target/nextflow/agat/agat_convert_embl2gff/main.nf index cf33cdd5..d52fc4d4 100644 --- a/target/nextflow/agat/agat_convert_embl2gff/main.nf +++ b/target/nextflow/agat/agat_convert_embl2gff/main.nf @@ -3085,9 +3085,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/agat/agat_convert_embl2gff", "viash_version" : "0.9.0", - "git_commit" : "237a2e3a229ee589d1ebbc282526f87398e26f58", - "git_remote" : "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-7-g237a2e3" + "git_commit" : "0a0edcacb5368517d249210022363bd9265f1bf5", + "git_remote" : "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-8-g0a0edca" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/agat/agat_convert_genscan2gff/.config.vsh.yaml b/target/nextflow/agat/agat_convert_genscan2gff/.config.vsh.yaml index 2a590569..a9dea8a5 100644 --- a/target/nextflow/agat/agat_convert_genscan2gff/.config.vsh.yaml +++ b/target/nextflow/agat/agat_convert_genscan2gff/.config.vsh.yaml @@ -230,9 +230,9 @@ build_info: output: "target/nextflow/agat/agat_convert_genscan2gff" executable: "target/nextflow/agat/agat_convert_genscan2gff/main.nf" viash_version: "0.9.0" - git_commit: "237a2e3a229ee589d1ebbc282526f87398e26f58" - git_remote: "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox" - git_tag: "v0.2.0-7-g237a2e3" + git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5" + git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox" + git_tag: "v0.2.0-8-g0a0edca" package_config: name: "biobox" version: "main" diff --git a/target/nextflow/agat/agat_convert_genscan2gff/main.nf b/target/nextflow/agat/agat_convert_genscan2gff/main.nf index 68a0840f..1eb4f320 100644 --- a/target/nextflow/agat/agat_convert_genscan2gff/main.nf +++ b/target/nextflow/agat/agat_convert_genscan2gff/main.nf @@ -3087,9 +3087,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/agat/agat_convert_genscan2gff", "viash_version" : "0.9.0", - "git_commit" : "237a2e3a229ee589d1ebbc282526f87398e26f58", - "git_remote" : "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-7-g237a2e3" + "git_commit" : "0a0edcacb5368517d249210022363bd9265f1bf5", + "git_remote" : "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-8-g0a0edca" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/agat/agat_convert_sp_gff2gtf/.config.vsh.yaml b/target/nextflow/agat/agat_convert_sp_gff2gtf/.config.vsh.yaml index 40045593..054fdb05 100644 --- a/target/nextflow/agat/agat_convert_sp_gff2gtf/.config.vsh.yaml +++ b/target/nextflow/agat/agat_convert_sp_gff2gtf/.config.vsh.yaml @@ -228,9 +228,9 @@ build_info: output: "target/nextflow/agat/agat_convert_sp_gff2gtf" executable: "target/nextflow/agat/agat_convert_sp_gff2gtf/main.nf" viash_version: "0.9.0" - git_commit: "237a2e3a229ee589d1ebbc282526f87398e26f58" - git_remote: "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox" - git_tag: "v0.2.0-7-g237a2e3" + git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5" + git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox" + git_tag: "v0.2.0-8-g0a0edca" package_config: name: "biobox" version: "main" diff --git a/target/nextflow/agat/agat_convert_sp_gff2gtf/main.nf b/target/nextflow/agat/agat_convert_sp_gff2gtf/main.nf index e147e5a4..885b236d 100644 --- a/target/nextflow/agat/agat_convert_sp_gff2gtf/main.nf +++ b/target/nextflow/agat/agat_convert_sp_gff2gtf/main.nf @@ -3068,9 +3068,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/agat/agat_convert_sp_gff2gtf", "viash_version" : "0.9.0", - "git_commit" : "237a2e3a229ee589d1ebbc282526f87398e26f58", - "git_remote" : "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-7-g237a2e3" + "git_commit" : "0a0edcacb5368517d249210022363bd9265f1bf5", + "git_remote" : "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-8-g0a0edca" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/agat/agat_convert_sp_gff2tsv/.config.vsh.yaml b/target/nextflow/agat/agat_convert_sp_gff2tsv/.config.vsh.yaml index 7e4c51a6..9982bc66 100644 --- a/target/nextflow/agat/agat_convert_sp_gff2tsv/.config.vsh.yaml +++ b/target/nextflow/agat/agat_convert_sp_gff2tsv/.config.vsh.yaml @@ -188,9 +188,9 @@ build_info: output: "target/nextflow/agat/agat_convert_sp_gff2tsv" executable: "target/nextflow/agat/agat_convert_sp_gff2tsv/main.nf" viash_version: "0.9.0" - git_commit: "237a2e3a229ee589d1ebbc282526f87398e26f58" - git_remote: "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox" - git_tag: "v0.2.0-7-g237a2e3" + git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5" + git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox" + git_tag: "v0.2.0-8-g0a0edca" package_config: name: "biobox" version: "main" diff --git a/target/nextflow/agat/agat_convert_sp_gff2tsv/main.nf b/target/nextflow/agat/agat_convert_sp_gff2tsv/main.nf index 76ca4ef1..056f651e 100644 --- a/target/nextflow/agat/agat_convert_sp_gff2tsv/main.nf +++ b/target/nextflow/agat/agat_convert_sp_gff2tsv/main.nf @@ -3046,9 +3046,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/agat/agat_convert_sp_gff2tsv", "viash_version" : "0.9.0", - "git_commit" : "237a2e3a229ee589d1ebbc282526f87398e26f58", - "git_remote" : "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-7-g237a2e3" + "git_commit" : "0a0edcacb5368517d249210022363bd9265f1bf5", + "git_remote" : "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-8-g0a0edca" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/agat/agat_convert_sp_gxf2gxf/.config.vsh.yaml b/target/nextflow/agat/agat_convert_sp_gxf2gxf/.config.vsh.yaml index 47ef0181..32df2554 100644 --- a/target/nextflow/agat/agat_convert_sp_gxf2gxf/.config.vsh.yaml +++ b/target/nextflow/agat/agat_convert_sp_gxf2gxf/.config.vsh.yaml @@ -195,9 +195,9 @@ build_info: output: "target/nextflow/agat/agat_convert_sp_gxf2gxf" executable: "target/nextflow/agat/agat_convert_sp_gxf2gxf/main.nf" viash_version: "0.9.0" - git_commit: "237a2e3a229ee589d1ebbc282526f87398e26f58" - git_remote: "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox" - git_tag: "v0.2.0-7-g237a2e3" + git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5" + git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox" + git_tag: "v0.2.0-8-g0a0edca" package_config: name: "biobox" version: "main" diff --git a/target/nextflow/agat/agat_convert_sp_gxf2gxf/main.nf b/target/nextflow/agat/agat_convert_sp_gxf2gxf/main.nf index 1a295653..d2bcb010 100644 --- a/target/nextflow/agat/agat_convert_sp_gxf2gxf/main.nf +++ b/target/nextflow/agat/agat_convert_sp_gxf2gxf/main.nf @@ -3046,9 +3046,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/agat/agat_convert_sp_gxf2gxf", "viash_version" : "0.9.0", - "git_commit" : "237a2e3a229ee589d1ebbc282526f87398e26f58", - "git_remote" : "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-7-g237a2e3" + "git_commit" : "0a0edcacb5368517d249210022363bd9265f1bf5", + "git_remote" : "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-8-g0a0edca" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/arriba/.config.vsh.yaml b/target/nextflow/arriba/.config.vsh.yaml index b311f218..b39c212d 100644 --- a/target/nextflow/arriba/.config.vsh.yaml +++ b/target/nextflow/arriba/.config.vsh.yaml @@ -706,9 +706,9 @@ build_info: output: "target/nextflow/arriba" executable: "target/nextflow/arriba/main.nf" viash_version: "0.9.0" - git_commit: "237a2e3a229ee589d1ebbc282526f87398e26f58" - git_remote: "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox" - git_tag: "v0.2.0-7-g237a2e3" + git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5" + git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox" + git_tag: "v0.2.0-8-g0a0edca" package_config: name: "biobox" version: "main" diff --git a/target/nextflow/arriba/main.nf b/target/nextflow/arriba/main.nf index b17bc439..d2933bde 100644 --- a/target/nextflow/arriba/main.nf +++ b/target/nextflow/arriba/main.nf @@ -3592,9 +3592,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/arriba", "viash_version" : "0.9.0", - "git_commit" : "237a2e3a229ee589d1ebbc282526f87398e26f58", - "git_remote" : "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-7-g237a2e3" + "git_commit" : "0a0edcacb5368517d249210022363bd9265f1bf5", + "git_remote" : "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-8-g0a0edca" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/bcftools/bcftools_annotate/.config.vsh.yaml b/target/nextflow/bcftools/bcftools_annotate/.config.vsh.yaml index 3d5ee1fb..9747fef4 100644 --- a/target/nextflow/bcftools/bcftools_annotate/.config.vsh.yaml +++ b/target/nextflow/bcftools/bcftools_annotate/.config.vsh.yaml @@ -469,9 +469,9 @@ build_info: output: "target/nextflow/bcftools/bcftools_annotate" executable: "target/nextflow/bcftools/bcftools_annotate/main.nf" viash_version: "0.9.0" - git_commit: "237a2e3a229ee589d1ebbc282526f87398e26f58" - git_remote: "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox" - git_tag: "v0.2.0-7-g237a2e3" + git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5" + git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox" + git_tag: "v0.2.0-8-g0a0edca" package_config: name: "biobox" version: "main" diff --git a/target/nextflow/bcftools/bcftools_annotate/main.nf b/target/nextflow/bcftools/bcftools_annotate/main.nf index 48ad5891..ef0e0a47 100644 --- a/target/nextflow/bcftools/bcftools_annotate/main.nf +++ b/target/nextflow/bcftools/bcftools_annotate/main.nf @@ -3335,9 +3335,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/bcftools/bcftools_annotate", "viash_version" : "0.9.0", - "git_commit" : "237a2e3a229ee589d1ebbc282526f87398e26f58", - "git_remote" : "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-7-g237a2e3" + "git_commit" : "0a0edcacb5368517d249210022363bd9265f1bf5", + "git_remote" : "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-8-g0a0edca" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/bcftools/bcftools_concat/.config.vsh.yaml b/target/nextflow/bcftools/bcftools_concat/.config.vsh.yaml index 5d76c240..02b1393e 100644 --- a/target/nextflow/bcftools/bcftools_concat/.config.vsh.yaml +++ b/target/nextflow/bcftools/bcftools_concat/.config.vsh.yaml @@ -335,9 +335,9 @@ build_info: output: "target/nextflow/bcftools/bcftools_concat" executable: "target/nextflow/bcftools/bcftools_concat/main.nf" viash_version: "0.9.0" - git_commit: "237a2e3a229ee589d1ebbc282526f87398e26f58" - git_remote: "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox" - git_tag: "v0.2.0-7-g237a2e3" + git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5" + git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox" + git_tag: "v0.2.0-8-g0a0edca" package_config: name: "biobox" version: "main" diff --git a/target/nextflow/bcftools/bcftools_concat/main.nf b/target/nextflow/bcftools/bcftools_concat/main.nf index 719b35d5..de45f07c 100644 --- a/target/nextflow/bcftools/bcftools_concat/main.nf +++ b/target/nextflow/bcftools/bcftools_concat/main.nf @@ -3207,9 +3207,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/bcftools/bcftools_concat", "viash_version" : "0.9.0", - "git_commit" : "237a2e3a229ee589d1ebbc282526f87398e26f58", - "git_remote" : "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-7-g237a2e3" + "git_commit" : "0a0edcacb5368517d249210022363bd9265f1bf5", + "git_remote" : "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-8-g0a0edca" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/bcftools/bcftools_norm/.config.vsh.yaml b/target/nextflow/bcftools/bcftools_norm/.config.vsh.yaml index b6cecaf2..a21a4ce5 100644 --- a/target/nextflow/bcftools/bcftools_norm/.config.vsh.yaml +++ b/target/nextflow/bcftools/bcftools_norm/.config.vsh.yaml @@ -416,9 +416,9 @@ build_info: output: "target/nextflow/bcftools/bcftools_norm" executable: "target/nextflow/bcftools/bcftools_norm/main.nf" viash_version: "0.9.0" - git_commit: "237a2e3a229ee589d1ebbc282526f87398e26f58" - git_remote: "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox" - git_tag: "v0.2.0-7-g237a2e3" + git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5" + git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox" + git_tag: "v0.2.0-8-g0a0edca" package_config: name: "biobox" version: "main" diff --git a/target/nextflow/bcftools/bcftools_norm/main.nf b/target/nextflow/bcftools/bcftools_norm/main.nf index f98247e7..d2920bb7 100644 --- a/target/nextflow/bcftools/bcftools_norm/main.nf +++ b/target/nextflow/bcftools/bcftools_norm/main.nf @@ -3300,9 +3300,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/bcftools/bcftools_norm", "viash_version" : "0.9.0", - "git_commit" : "237a2e3a229ee589d1ebbc282526f87398e26f58", - "git_remote" : "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-7-g237a2e3" + "git_commit" : "0a0edcacb5368517d249210022363bd9265f1bf5", + "git_remote" : "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-8-g0a0edca" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/bcftools/bcftools_sort/.config.vsh.yaml b/target/nextflow/bcftools/bcftools_sort/.config.vsh.yaml index 067310f6..c5587329 100644 --- a/target/nextflow/bcftools/bcftools_sort/.config.vsh.yaml +++ b/target/nextflow/bcftools/bcftools_sort/.config.vsh.yaml @@ -185,9 +185,9 @@ build_info: output: "target/nextflow/bcftools/bcftools_sort" executable: "target/nextflow/bcftools/bcftools_sort/main.nf" viash_version: "0.9.0" - git_commit: "237a2e3a229ee589d1ebbc282526f87398e26f58" - git_remote: "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox" - git_tag: "v0.2.0-7-g237a2e3" + git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5" + git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox" + git_tag: "v0.2.0-8-g0a0edca" package_config: name: "biobox" version: "main" diff --git a/target/nextflow/bcftools/bcftools_sort/main.nf b/target/nextflow/bcftools/bcftools_sort/main.nf index 83b95499..d0160b9b 100644 --- a/target/nextflow/bcftools/bcftools_sort/main.nf +++ b/target/nextflow/bcftools/bcftools_sort/main.nf @@ -3048,9 +3048,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/bcftools/bcftools_sort", "viash_version" : "0.9.0", - "git_commit" : "237a2e3a229ee589d1ebbc282526f87398e26f58", - "git_remote" : "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-7-g237a2e3" + "git_commit" : "0a0edcacb5368517d249210022363bd9265f1bf5", + "git_remote" : "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-8-g0a0edca" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/bcftools/bcftools_stats/.config.vsh.yaml b/target/nextflow/bcftools/bcftools_stats/.config.vsh.yaml index 3a894cc4..3f120caf 100644 --- a/target/nextflow/bcftools/bcftools_stats/.config.vsh.yaml +++ b/target/nextflow/bcftools/bcftools_stats/.config.vsh.yaml @@ -458,9 +458,9 @@ build_info: output: "target/nextflow/bcftools/bcftools_stats" executable: "target/nextflow/bcftools/bcftools_stats/main.nf" viash_version: "0.9.0" - git_commit: "237a2e3a229ee589d1ebbc282526f87398e26f58" - git_remote: "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox" - git_tag: "v0.2.0-7-g237a2e3" + git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5" + git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox" + git_tag: "v0.2.0-8-g0a0edca" package_config: name: "biobox" version: "main" diff --git a/target/nextflow/bcftools/bcftools_stats/main.nf b/target/nextflow/bcftools/bcftools_stats/main.nf index 564684fc..3e9b1ceb 100644 --- a/target/nextflow/bcftools/bcftools_stats/main.nf +++ b/target/nextflow/bcftools/bcftools_stats/main.nf @@ -3337,9 +3337,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/bcftools/bcftools_stats", "viash_version" : "0.9.0", - "git_commit" : "237a2e3a229ee589d1ebbc282526f87398e26f58", - "git_remote" : "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-7-g237a2e3" + "git_commit" : "0a0edcacb5368517d249210022363bd9265f1bf5", + "git_remote" : "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-8-g0a0edca" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/bcl_convert/.config.vsh.yaml b/target/nextflow/bcl_convert/.config.vsh.yaml index 733bd6c1..94a85113 100644 --- a/target/nextflow/bcl_convert/.config.vsh.yaml +++ b/target/nextflow/bcl_convert/.config.vsh.yaml @@ -418,9 +418,9 @@ build_info: output: "target/nextflow/bcl_convert" executable: "target/nextflow/bcl_convert/main.nf" viash_version: "0.9.0" - git_commit: "237a2e3a229ee589d1ebbc282526f87398e26f58" - git_remote: "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox" - git_tag: "v0.2.0-7-g237a2e3" + git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5" + git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox" + git_tag: "v0.2.0-8-g0a0edca" package_config: name: "biobox" version: "main" diff --git a/target/nextflow/bcl_convert/main.nf b/target/nextflow/bcl_convert/main.nf index 9bfaeb64..1a88488b 100644 --- a/target/nextflow/bcl_convert/main.nf +++ b/target/nextflow/bcl_convert/main.nf @@ -3329,9 +3329,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/bcl_convert", "viash_version" : "0.9.0", - "git_commit" : "237a2e3a229ee589d1ebbc282526f87398e26f58", - "git_remote" : "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-7-g237a2e3" + "git_commit" : "0a0edcacb5368517d249210022363bd9265f1bf5", + "git_remote" : "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-8-g0a0edca" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/bd_rhapsody/bd_rhapsody_make_reference/.config.vsh.yaml b/target/nextflow/bd_rhapsody/bd_rhapsody_make_reference/.config.vsh.yaml index 4195c1d3..1770255a 100644 --- a/target/nextflow/bd_rhapsody/bd_rhapsody_make_reference/.config.vsh.yaml +++ b/target/nextflow/bd_rhapsody/bd_rhapsody_make_reference/.config.vsh.yaml @@ -274,9 +274,9 @@ build_info: output: "target/nextflow/bd_rhapsody/bd_rhapsody_make_reference" executable: "target/nextflow/bd_rhapsody/bd_rhapsody_make_reference/main.nf" viash_version: "0.9.0" - git_commit: "237a2e3a229ee589d1ebbc282526f87398e26f58" - git_remote: "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox" - git_tag: "v0.2.0-7-g237a2e3" + git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5" + git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox" + git_tag: "v0.2.0-8-g0a0edca" package_config: name: "biobox" version: "main" diff --git a/target/nextflow/bd_rhapsody/bd_rhapsody_make_reference/main.nf b/target/nextflow/bd_rhapsody/bd_rhapsody_make_reference/main.nf index f686364e..2b816239 100644 --- a/target/nextflow/bd_rhapsody/bd_rhapsody_make_reference/main.nf +++ b/target/nextflow/bd_rhapsody/bd_rhapsody_make_reference/main.nf @@ -3146,9 +3146,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/bd_rhapsody/bd_rhapsody_make_reference", "viash_version" : "0.9.0", - "git_commit" : "237a2e3a229ee589d1ebbc282526f87398e26f58", - "git_remote" : "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-7-g237a2e3" + "git_commit" : "0a0edcacb5368517d249210022363bd9265f1bf5", + "git_remote" : "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-8-g0a0edca" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/bd_rhapsody/bd_rhapsody_sequence_analysis/.config.vsh.yaml b/target/nextflow/bd_rhapsody/bd_rhapsody_sequence_analysis/.config.vsh.yaml index c685d370..08578d00 100644 --- a/target/nextflow/bd_rhapsody/bd_rhapsody_sequence_analysis/.config.vsh.yaml +++ b/target/nextflow/bd_rhapsody/bd_rhapsody_sequence_analysis/.config.vsh.yaml @@ -1115,9 +1115,9 @@ build_info: output: "target/nextflow/bd_rhapsody/bd_rhapsody_sequence_analysis" executable: "target/nextflow/bd_rhapsody/bd_rhapsody_sequence_analysis/main.nf" viash_version: "0.9.0" - git_commit: "237a2e3a229ee589d1ebbc282526f87398e26f58" - git_remote: "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox" - git_tag: "v0.2.0-7-g237a2e3" + git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5" + git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox" + git_tag: "v0.2.0-8-g0a0edca" package_config: name: "biobox" version: "main" diff --git a/target/nextflow/bd_rhapsody/bd_rhapsody_sequence_analysis/main.nf b/target/nextflow/bd_rhapsody/bd_rhapsody_sequence_analysis/main.nf index 504c6169..5d3d8216 100644 --- a/target/nextflow/bd_rhapsody/bd_rhapsody_sequence_analysis/main.nf +++ b/target/nextflow/bd_rhapsody/bd_rhapsody_sequence_analysis/main.nf @@ -4193,9 +4193,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/bd_rhapsody/bd_rhapsody_sequence_analysis", "viash_version" : "0.9.0", - "git_commit" : "237a2e3a229ee589d1ebbc282526f87398e26f58", - "git_remote" : "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-7-g237a2e3" + "git_commit" : "0a0edcacb5368517d249210022363bd9265f1bf5", + "git_remote" : "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-8-g0a0edca" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/bedtools/bedtools_bamtofastq/.config.vsh.yaml b/target/nextflow/bedtools/bedtools_bamtofastq/.config.vsh.yaml index ad37b594..bdf91f97 100644 --- a/target/nextflow/bedtools/bedtools_bamtofastq/.config.vsh.yaml +++ b/target/nextflow/bedtools/bedtools_bamtofastq/.config.vsh.yaml @@ -187,9 +187,9 @@ build_info: output: "target/nextflow/bedtools/bedtools_bamtofastq" executable: "target/nextflow/bedtools/bedtools_bamtofastq/main.nf" viash_version: "0.9.0" - git_commit: "237a2e3a229ee589d1ebbc282526f87398e26f58" - git_remote: "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox" - git_tag: "v0.2.0-7-g237a2e3" + git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5" + git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox" + git_tag: "v0.2.0-8-g0a0edca" package_config: name: "biobox" version: "main" diff --git a/target/nextflow/bedtools/bedtools_bamtofastq/main.nf b/target/nextflow/bedtools/bedtools_bamtofastq/main.nf index 60f66873..cfa64852 100644 --- a/target/nextflow/bedtools/bedtools_bamtofastq/main.nf +++ b/target/nextflow/bedtools/bedtools_bamtofastq/main.nf @@ -3050,9 +3050,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/bedtools/bedtools_bamtofastq", "viash_version" : "0.9.0", - "git_commit" : "237a2e3a229ee589d1ebbc282526f87398e26f58", - "git_remote" : "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-7-g237a2e3" + "git_commit" : "0a0edcacb5368517d249210022363bd9265f1bf5", + "git_remote" : "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-8-g0a0edca" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/bedtools/bedtools_bed12tobed6/.config.vsh.yaml b/target/nextflow/bedtools/bedtools_bed12tobed6/.config.vsh.yaml index 8a276648..4c891f1a 100644 --- a/target/nextflow/bedtools/bedtools_bed12tobed6/.config.vsh.yaml +++ b/target/nextflow/bedtools/bedtools_bed12tobed6/.config.vsh.yaml @@ -176,9 +176,9 @@ build_info: output: "target/nextflow/bedtools/bedtools_bed12tobed6" executable: "target/nextflow/bedtools/bedtools_bed12tobed6/main.nf" viash_version: "0.9.0" - git_commit: "237a2e3a229ee589d1ebbc282526f87398e26f58" - git_remote: "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox" - git_tag: "v0.2.0-7-g237a2e3" + git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5" + git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox" + git_tag: "v0.2.0-8-g0a0edca" package_config: name: "biobox" version: "main" diff --git a/target/nextflow/bedtools/bedtools_bed12tobed6/main.nf b/target/nextflow/bedtools/bedtools_bed12tobed6/main.nf index f5870432..ca22a762 100644 --- a/target/nextflow/bedtools/bedtools_bed12tobed6/main.nf +++ b/target/nextflow/bedtools/bedtools_bed12tobed6/main.nf @@ -3035,9 +3035,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/bedtools/bedtools_bed12tobed6", "viash_version" : "0.9.0", - "git_commit" : "237a2e3a229ee589d1ebbc282526f87398e26f58", - "git_remote" : "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-7-g237a2e3" + "git_commit" : "0a0edcacb5368517d249210022363bd9265f1bf5", + "git_remote" : "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-8-g0a0edca" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/bedtools/bedtools_bedtobam/.config.vsh.yaml b/target/nextflow/bedtools/bedtools_bedtobam/.config.vsh.yaml index ac986745..9e3c82e0 100644 --- a/target/nextflow/bedtools/bedtools_bedtobam/.config.vsh.yaml +++ b/target/nextflow/bedtools/bedtools_bedtobam/.config.vsh.yaml @@ -214,9 +214,9 @@ build_info: output: "target/nextflow/bedtools/bedtools_bedtobam" executable: "target/nextflow/bedtools/bedtools_bedtobam/main.nf" viash_version: "0.9.0" - git_commit: "237a2e3a229ee589d1ebbc282526f87398e26f58" - git_remote: "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox" - git_tag: "v0.2.0-7-g237a2e3" + git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5" + git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox" + git_tag: "v0.2.0-8-g0a0edca" package_config: name: "biobox" version: "main" diff --git a/target/nextflow/bedtools/bedtools_bedtobam/main.nf b/target/nextflow/bedtools/bedtools_bedtobam/main.nf index de992983..99eadac7 100644 --- a/target/nextflow/bedtools/bedtools_bedtobam/main.nf +++ b/target/nextflow/bedtools/bedtools_bedtobam/main.nf @@ -3083,9 +3083,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/bedtools/bedtools_bedtobam", "viash_version" : "0.9.0", - "git_commit" : "237a2e3a229ee589d1ebbc282526f87398e26f58", - "git_remote" : "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-7-g237a2e3" + "git_commit" : "0a0edcacb5368517d249210022363bd9265f1bf5", + "git_remote" : "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-8-g0a0edca" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/bedtools/bedtools_genomecov/.config.vsh.yaml b/target/nextflow/bedtools/bedtools_genomecov/.config.vsh.yaml index 8b0a8e7c..1dfc54ad 100644 --- a/target/nextflow/bedtools/bedtools_genomecov/.config.vsh.yaml +++ b/target/nextflow/bedtools/bedtools_genomecov/.config.vsh.yaml @@ -337,9 +337,9 @@ build_info: output: "target/nextflow/bedtools/bedtools_genomecov" executable: "target/nextflow/bedtools/bedtools_genomecov/main.nf" viash_version: "0.9.0" - git_commit: "237a2e3a229ee589d1ebbc282526f87398e26f58" - git_remote: "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox" - git_tag: "v0.2.0-7-g237a2e3" + git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5" + git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox" + git_tag: "v0.2.0-8-g0a0edca" package_config: name: "biobox" version: "main" diff --git a/target/nextflow/bedtools/bedtools_genomecov/main.nf b/target/nextflow/bedtools/bedtools_genomecov/main.nf index 6c0fd460..cca2ac6e 100644 --- a/target/nextflow/bedtools/bedtools_genomecov/main.nf +++ b/target/nextflow/bedtools/bedtools_genomecov/main.nf @@ -3207,9 +3207,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/bedtools/bedtools_genomecov", "viash_version" : "0.9.0", - "git_commit" : "237a2e3a229ee589d1ebbc282526f87398e26f58", - "git_remote" : "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-7-g237a2e3" + "git_commit" : "0a0edcacb5368517d249210022363bd9265f1bf5", + "git_remote" : "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-8-g0a0edca" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/bedtools/bedtools_getfasta/.config.vsh.yaml b/target/nextflow/bedtools/bedtools_getfasta/.config.vsh.yaml index 12874b5b..59c52d96 100644 --- a/target/nextflow/bedtools/bedtools_getfasta/.config.vsh.yaml +++ b/target/nextflow/bedtools/bedtools_getfasta/.config.vsh.yaml @@ -232,9 +232,9 @@ build_info: output: "target/nextflow/bedtools/bedtools_getfasta" executable: "target/nextflow/bedtools/bedtools_getfasta/main.nf" viash_version: "0.9.0" - git_commit: "237a2e3a229ee589d1ebbc282526f87398e26f58" - git_remote: "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox" - git_tag: "v0.2.0-7-g237a2e3" + git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5" + git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox" + git_tag: "v0.2.0-8-g0a0edca" package_config: name: "biobox" version: "main" diff --git a/target/nextflow/bedtools/bedtools_getfasta/main.nf b/target/nextflow/bedtools/bedtools_getfasta/main.nf index 76db9900..3ccf04db 100644 --- a/target/nextflow/bedtools/bedtools_getfasta/main.nf +++ b/target/nextflow/bedtools/bedtools_getfasta/main.nf @@ -3086,9 +3086,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/bedtools/bedtools_getfasta", "viash_version" : "0.9.0", - "git_commit" : "237a2e3a229ee589d1ebbc282526f87398e26f58", - "git_remote" : "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-7-g237a2e3" + "git_commit" : "0a0edcacb5368517d249210022363bd9265f1bf5", + "git_remote" : "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-8-g0a0edca" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/bedtools/bedtools_groupby/.config.vsh.yaml b/target/nextflow/bedtools/bedtools_groupby/.config.vsh.yaml index 0304d7a3..dbe2d26e 100644 --- a/target/nextflow/bedtools/bedtools_groupby/.config.vsh.yaml +++ b/target/nextflow/bedtools/bedtools_groupby/.config.vsh.yaml @@ -273,9 +273,9 @@ build_info: output: "target/nextflow/bedtools/bedtools_groupby" executable: "target/nextflow/bedtools/bedtools_groupby/main.nf" viash_version: "0.9.0" - git_commit: "237a2e3a229ee589d1ebbc282526f87398e26f58" - git_remote: "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox" - git_tag: "v0.2.0-7-g237a2e3" + git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5" + git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox" + git_tag: "v0.2.0-8-g0a0edca" package_config: name: "biobox" version: "main" diff --git a/target/nextflow/bedtools/bedtools_groupby/main.nf b/target/nextflow/bedtools/bedtools_groupby/main.nf index 453ab5bf..2f56e8e8 100644 --- a/target/nextflow/bedtools/bedtools_groupby/main.nf +++ b/target/nextflow/bedtools/bedtools_groupby/main.nf @@ -3130,9 +3130,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/bedtools/bedtools_groupby", "viash_version" : "0.9.0", - "git_commit" : "237a2e3a229ee589d1ebbc282526f87398e26f58", - "git_remote" : "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-7-g237a2e3" + "git_commit" : "0a0edcacb5368517d249210022363bd9265f1bf5", + "git_remote" : "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-8-g0a0edca" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/bedtools/bedtools_intersect/.config.vsh.yaml b/target/nextflow/bedtools/bedtools_intersect/.config.vsh.yaml index d67052c9..5fd74558 100644 --- a/target/nextflow/bedtools/bedtools_intersect/.config.vsh.yaml +++ b/target/nextflow/bedtools/bedtools_intersect/.config.vsh.yaml @@ -410,9 +410,9 @@ build_info: output: "target/nextflow/bedtools/bedtools_intersect" executable: "target/nextflow/bedtools/bedtools_intersect/main.nf" viash_version: "0.9.0" - git_commit: "237a2e3a229ee589d1ebbc282526f87398e26f58" - git_remote: "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox" - git_tag: "v0.2.0-7-g237a2e3" + git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5" + git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox" + git_tag: "v0.2.0-8-g0a0edca" package_config: name: "biobox" version: "main" diff --git a/target/nextflow/bedtools/bedtools_intersect/main.nf b/target/nextflow/bedtools/bedtools_intersect/main.nf index a2c2d211..bc0b4f57 100644 --- a/target/nextflow/bedtools/bedtools_intersect/main.nf +++ b/target/nextflow/bedtools/bedtools_intersect/main.nf @@ -3282,9 +3282,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/bedtools/bedtools_intersect", "viash_version" : "0.9.0", - "git_commit" : "237a2e3a229ee589d1ebbc282526f87398e26f58", - "git_remote" : "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-7-g237a2e3" + "git_commit" : "0a0edcacb5368517d249210022363bd9265f1bf5", + "git_remote" : "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-8-g0a0edca" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/bedtools/bedtools_links/.config.vsh.yaml b/target/nextflow/bedtools/bedtools_links/.config.vsh.yaml index 90ffe1fa..57b4bfa9 100644 --- a/target/nextflow/bedtools/bedtools_links/.config.vsh.yaml +++ b/target/nextflow/bedtools/bedtools_links/.config.vsh.yaml @@ -210,9 +210,9 @@ build_info: output: "target/nextflow/bedtools/bedtools_links" executable: "target/nextflow/bedtools/bedtools_links/main.nf" viash_version: "0.9.0" - git_commit: "237a2e3a229ee589d1ebbc282526f87398e26f58" - git_remote: "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox" - git_tag: "v0.2.0-7-g237a2e3" + git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5" + git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox" + git_tag: "v0.2.0-8-g0a0edca" package_config: name: "biobox" version: "main" diff --git a/target/nextflow/bedtools/bedtools_links/main.nf b/target/nextflow/bedtools/bedtools_links/main.nf index b8d3bfb4..4ebf69db 100644 --- a/target/nextflow/bedtools/bedtools_links/main.nf +++ b/target/nextflow/bedtools/bedtools_links/main.nf @@ -3073,9 +3073,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/bedtools/bedtools_links", "viash_version" : "0.9.0", - "git_commit" : "237a2e3a229ee589d1ebbc282526f87398e26f58", - "git_remote" : "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-7-g237a2e3" + "git_commit" : "0a0edcacb5368517d249210022363bd9265f1bf5", + "git_remote" : "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-8-g0a0edca" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/bedtools/bedtools_merge/.config.vsh.yaml b/target/nextflow/bedtools/bedtools_merge/.config.vsh.yaml index b5b6b607..e11b2a99 100644 --- a/target/nextflow/bedtools/bedtools_merge/.config.vsh.yaml +++ b/target/nextflow/bedtools/bedtools_merge/.config.vsh.yaml @@ -279,9 +279,9 @@ build_info: output: "target/nextflow/bedtools/bedtools_merge" executable: "target/nextflow/bedtools/bedtools_merge/main.nf" viash_version: "0.9.0" - git_commit: "237a2e3a229ee589d1ebbc282526f87398e26f58" - git_remote: "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox" - git_tag: "v0.2.0-7-g237a2e3" + git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5" + git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox" + git_tag: "v0.2.0-8-g0a0edca" package_config: name: "biobox" version: "main" diff --git a/target/nextflow/bedtools/bedtools_merge/main.nf b/target/nextflow/bedtools/bedtools_merge/main.nf index d8adc286..a109378a 100644 --- a/target/nextflow/bedtools/bedtools_merge/main.nf +++ b/target/nextflow/bedtools/bedtools_merge/main.nf @@ -3134,9 +3134,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/bedtools/bedtools_merge", "viash_version" : "0.9.0", - "git_commit" : "237a2e3a229ee589d1ebbc282526f87398e26f58", - "git_remote" : "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-7-g237a2e3" + "git_commit" : "0a0edcacb5368517d249210022363bd9265f1bf5", + "git_remote" : "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-8-g0a0edca" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/bedtools/bedtools_sort/.config.vsh.yaml b/target/nextflow/bedtools/bedtools_sort/.config.vsh.yaml index ef2f8989..b0d4457a 100644 --- a/target/nextflow/bedtools/bedtools_sort/.config.vsh.yaml +++ b/target/nextflow/bedtools/bedtools_sort/.config.vsh.yaml @@ -222,9 +222,9 @@ build_info: output: "target/nextflow/bedtools/bedtools_sort" executable: "target/nextflow/bedtools/bedtools_sort/main.nf" viash_version: "0.9.0" - git_commit: "237a2e3a229ee589d1ebbc282526f87398e26f58" - git_remote: "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox" - git_tag: "v0.2.0-7-g237a2e3" + git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5" + git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox" + git_tag: "v0.2.0-8-g0a0edca" package_config: name: "biobox" version: "main" diff --git a/target/nextflow/bedtools/bedtools_sort/main.nf b/target/nextflow/bedtools/bedtools_sort/main.nf index 64de427d..4ccaaa33 100644 --- a/target/nextflow/bedtools/bedtools_sort/main.nf +++ b/target/nextflow/bedtools/bedtools_sort/main.nf @@ -3092,9 +3092,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/bedtools/bedtools_sort", "viash_version" : "0.9.0", - "git_commit" : "237a2e3a229ee589d1ebbc282526f87398e26f58", - "git_remote" : "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-7-g237a2e3" + "git_commit" : "0a0edcacb5368517d249210022363bd9265f1bf5", + "git_remote" : "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-8-g0a0edca" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/busco/busco_download_datasets/.config.vsh.yaml b/target/nextflow/busco/busco_download_datasets/.config.vsh.yaml index 4db9cd11..7cae6789 100644 --- a/target/nextflow/busco/busco_download_datasets/.config.vsh.yaml +++ b/target/nextflow/busco/busco_download_datasets/.config.vsh.yaml @@ -158,9 +158,9 @@ build_info: output: "target/nextflow/busco/busco_download_datasets" executable: "target/nextflow/busco/busco_download_datasets/main.nf" viash_version: "0.9.0" - git_commit: "237a2e3a229ee589d1ebbc282526f87398e26f58" - git_remote: "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox" - git_tag: "v0.2.0-7-g237a2e3" + git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5" + git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox" + git_tag: "v0.2.0-8-g0a0edca" package_config: name: "biobox" version: "main" diff --git a/target/nextflow/busco/busco_download_datasets/main.nf b/target/nextflow/busco/busco_download_datasets/main.nf index ab22709a..61a26ecf 100644 --- a/target/nextflow/busco/busco_download_datasets/main.nf +++ b/target/nextflow/busco/busco_download_datasets/main.nf @@ -3011,9 +3011,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/busco/busco_download_datasets", "viash_version" : "0.9.0", - "git_commit" : "237a2e3a229ee589d1ebbc282526f87398e26f58", - "git_remote" : "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-7-g237a2e3" + "git_commit" : "0a0edcacb5368517d249210022363bd9265f1bf5", + "git_remote" : "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-8-g0a0edca" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/busco/busco_list_datasets/.config.vsh.yaml b/target/nextflow/busco/busco_list_datasets/.config.vsh.yaml index c1b249b0..641c25d4 100644 --- a/target/nextflow/busco/busco_list_datasets/.config.vsh.yaml +++ b/target/nextflow/busco/busco_list_datasets/.config.vsh.yaml @@ -145,9 +145,9 @@ build_info: output: "target/nextflow/busco/busco_list_datasets" executable: "target/nextflow/busco/busco_list_datasets/main.nf" viash_version: "0.9.0" - git_commit: "237a2e3a229ee589d1ebbc282526f87398e26f58" - git_remote: "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox" - git_tag: "v0.2.0-7-g237a2e3" + git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5" + git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox" + git_tag: "v0.2.0-8-g0a0edca" package_config: name: "biobox" version: "main" diff --git a/target/nextflow/busco/busco_list_datasets/main.nf b/target/nextflow/busco/busco_list_datasets/main.nf index b63e7537..85ed832a 100644 --- a/target/nextflow/busco/busco_list_datasets/main.nf +++ b/target/nextflow/busco/busco_list_datasets/main.nf @@ -2997,9 +2997,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/busco/busco_list_datasets", "viash_version" : "0.9.0", - "git_commit" : "237a2e3a229ee589d1ebbc282526f87398e26f58", - "git_remote" : "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-7-g237a2e3" + "git_commit" : "0a0edcacb5368517d249210022363bd9265f1bf5", + "git_remote" : "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-8-g0a0edca" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/busco/busco_run/.config.vsh.yaml b/target/nextflow/busco/busco_run/.config.vsh.yaml index e7e609fa..f38dbc8c 100644 --- a/target/nextflow/busco/busco_run/.config.vsh.yaml +++ b/target/nextflow/busco/busco_run/.config.vsh.yaml @@ -423,9 +423,9 @@ build_info: output: "target/nextflow/busco/busco_run" executable: "target/nextflow/busco/busco_run/main.nf" viash_version: "0.9.0" - git_commit: "237a2e3a229ee589d1ebbc282526f87398e26f58" - git_remote: "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox" - git_tag: "v0.2.0-7-g237a2e3" + git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5" + git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox" + git_tag: "v0.2.0-8-g0a0edca" package_config: name: "biobox" version: "main" diff --git a/target/nextflow/busco/busco_run/main.nf b/target/nextflow/busco/busco_run/main.nf index c3653fb2..4848c102 100644 --- a/target/nextflow/busco/busco_run/main.nf +++ b/target/nextflow/busco/busco_run/main.nf @@ -3309,9 +3309,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/busco/busco_run", "viash_version" : "0.9.0", - "git_commit" : "237a2e3a229ee589d1ebbc282526f87398e26f58", - "git_remote" : "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-7-g237a2e3" + "git_commit" : "0a0edcacb5368517d249210022363bd9265f1bf5", + "git_remote" : "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-8-g0a0edca" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/cutadapt/.config.vsh.yaml b/target/nextflow/cutadapt/.config.vsh.yaml index 81479325..d2d9899e 100644 --- a/target/nextflow/cutadapt/.config.vsh.yaml +++ b/target/nextflow/cutadapt/.config.vsh.yaml @@ -740,9 +740,9 @@ build_info: output: "target/nextflow/cutadapt" executable: "target/nextflow/cutadapt/main.nf" viash_version: "0.9.0" - git_commit: "237a2e3a229ee589d1ebbc282526f87398e26f58" - git_remote: "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox" - git_tag: "v0.2.0-7-g237a2e3" + git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5" + git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox" + git_tag: "v0.2.0-8-g0a0edca" package_config: name: "biobox" version: "main" diff --git a/target/nextflow/cutadapt/main.nf b/target/nextflow/cutadapt/main.nf index b22e8f50..c191b7a6 100644 --- a/target/nextflow/cutadapt/main.nf +++ b/target/nextflow/cutadapt/main.nf @@ -3619,9 +3619,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/cutadapt", "viash_version" : "0.9.0", - "git_commit" : "237a2e3a229ee589d1ebbc282526f87398e26f58", - "git_remote" : "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-7-g237a2e3" + "git_commit" : "0a0edcacb5368517d249210022363bd9265f1bf5", + "git_remote" : "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-8-g0a0edca" }, "package_config" : { "name" : "biobox", @@ -3838,7 +3838,7 @@ input_args=\\$(echo \\\\ \\${par_overlap:+--overlap "\\${par_overlap}"} \\\\ \\${par_match_read_wildcards:+--match-read-wildcards} \\\\ \\${par_no_match_adapter_wildcards:+--no-match-adapter-wildcards} \\\\ - \\${par_action:+--action "\\${par_action}"} \\\\ + \\${par_action:+--action="\\${par_action}"} \\\\ \\${par_revcomp:+--revcomp} \\\\ ) debug "Arguments to cutadapt:" diff --git a/target/nextflow/falco/.config.vsh.yaml b/target/nextflow/falco/.config.vsh.yaml index f5f8b361..f393113f 100644 --- a/target/nextflow/falco/.config.vsh.yaml +++ b/target/nextflow/falco/.config.vsh.yaml @@ -317,9 +317,9 @@ build_info: output: "target/nextflow/falco" executable: "target/nextflow/falco/main.nf" viash_version: "0.9.0" - git_commit: "237a2e3a229ee589d1ebbc282526f87398e26f58" - git_remote: "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox" - git_tag: "v0.2.0-7-g237a2e3" + git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5" + git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox" + git_tag: "v0.2.0-8-g0a0edca" package_config: name: "biobox" version: "main" diff --git a/target/nextflow/falco/main.nf b/target/nextflow/falco/main.nf index 727bbd36..c062a76e 100644 --- a/target/nextflow/falco/main.nf +++ b/target/nextflow/falco/main.nf @@ -3170,9 +3170,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/falco", "viash_version" : "0.9.0", - "git_commit" : "237a2e3a229ee589d1ebbc282526f87398e26f58", - "git_remote" : "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-7-g237a2e3" + "git_commit" : "0a0edcacb5368517d249210022363bd9265f1bf5", + "git_remote" : "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-8-g0a0edca" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/fastp/.config.vsh.yaml b/target/nextflow/fastp/.config.vsh.yaml index cc88d9b3..9002b702 100644 --- a/target/nextflow/fastp/.config.vsh.yaml +++ b/target/nextflow/fastp/.config.vsh.yaml @@ -1083,9 +1083,9 @@ build_info: output: "target/nextflow/fastp" executable: "target/nextflow/fastp/main.nf" viash_version: "0.9.0" - git_commit: "237a2e3a229ee589d1ebbc282526f87398e26f58" - git_remote: "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox" - git_tag: "v0.2.0-7-g237a2e3" + git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5" + git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox" + git_tag: "v0.2.0-8-g0a0edca" package_config: name: "biobox" version: "main" diff --git a/target/nextflow/fastp/main.nf b/target/nextflow/fastp/main.nf index 9962ea52..59f557a8 100644 --- a/target/nextflow/fastp/main.nf +++ b/target/nextflow/fastp/main.nf @@ -4023,9 +4023,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/fastp", "viash_version" : "0.9.0", - "git_commit" : "237a2e3a229ee589d1ebbc282526f87398e26f58", - "git_remote" : "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-7-g237a2e3" + "git_commit" : "0a0edcacb5368517d249210022363bd9265f1bf5", + "git_remote" : "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-8-g0a0edca" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/fastqc/.config.vsh.yaml b/target/nextflow/fastqc/.config.vsh.yaml index 80169b93..6f2fef37 100644 --- a/target/nextflow/fastqc/.config.vsh.yaml +++ b/target/nextflow/fastqc/.config.vsh.yaml @@ -340,9 +340,9 @@ build_info: output: "target/nextflow/fastqc" executable: "target/nextflow/fastqc/main.nf" viash_version: "0.9.0" - git_commit: "237a2e3a229ee589d1ebbc282526f87398e26f58" - git_remote: "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox" - git_tag: "v0.2.0-7-g237a2e3" + git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5" + git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox" + git_tag: "v0.2.0-8-g0a0edca" package_config: name: "biobox" version: "main" diff --git a/target/nextflow/fastqc/main.nf b/target/nextflow/fastqc/main.nf index dc786da2..3a545c7e 100644 --- a/target/nextflow/fastqc/main.nf +++ b/target/nextflow/fastqc/main.nf @@ -3182,9 +3182,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/fastqc", "viash_version" : "0.9.0", - "git_commit" : "237a2e3a229ee589d1ebbc282526f87398e26f58", - "git_remote" : "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-7-g237a2e3" + "git_commit" : "0a0edcacb5368517d249210022363bd9265f1bf5", + "git_remote" : "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-8-g0a0edca" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/featurecounts/.config.vsh.yaml b/target/nextflow/featurecounts/.config.vsh.yaml index baa220c5..fc0eabb5 100644 --- a/target/nextflow/featurecounts/.config.vsh.yaml +++ b/target/nextflow/featurecounts/.config.vsh.yaml @@ -645,9 +645,9 @@ build_info: output: "target/nextflow/featurecounts" executable: "target/nextflow/featurecounts/main.nf" viash_version: "0.9.0" - git_commit: "237a2e3a229ee589d1ebbc282526f87398e26f58" - git_remote: "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox" - git_tag: "v0.2.0-7-g237a2e3" + git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5" + git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox" + git_tag: "v0.2.0-8-g0a0edca" package_config: name: "biobox" version: "main" diff --git a/target/nextflow/featurecounts/main.nf b/target/nextflow/featurecounts/main.nf index 7a8ad52c..25c95dec 100644 --- a/target/nextflow/featurecounts/main.nf +++ b/target/nextflow/featurecounts/main.nf @@ -3549,9 +3549,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/featurecounts", "viash_version" : "0.9.0", - "git_commit" : "237a2e3a229ee589d1ebbc282526f87398e26f58", - "git_remote" : "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-7-g237a2e3" + "git_commit" : "0a0edcacb5368517d249210022363bd9265f1bf5", + "git_remote" : "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-8-g0a0edca" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/fq_subsample/.config.vsh.yaml b/target/nextflow/fq_subsample/.config.vsh.yaml index 7c2d749b..b96632a0 100644 --- a/target/nextflow/fq_subsample/.config.vsh.yaml +++ b/target/nextflow/fq_subsample/.config.vsh.yaml @@ -190,9 +190,9 @@ build_info: output: "target/nextflow/fq_subsample" executable: "target/nextflow/fq_subsample/main.nf" viash_version: "0.9.0" - git_commit: "237a2e3a229ee589d1ebbc282526f87398e26f58" - git_remote: "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox" - git_tag: "v0.2.0-7-g237a2e3" + git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5" + git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox" + git_tag: "v0.2.0-8-g0a0edca" package_config: name: "biobox" version: "main" diff --git a/target/nextflow/fq_subsample/main.nf b/target/nextflow/fq_subsample/main.nf index 6b4e1ae1..a55ce1c1 100644 --- a/target/nextflow/fq_subsample/main.nf +++ b/target/nextflow/fq_subsample/main.nf @@ -3032,9 +3032,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/fq_subsample", "viash_version" : "0.9.0", - "git_commit" : "237a2e3a229ee589d1ebbc282526f87398e26f58", - "git_remote" : "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-7-g237a2e3" + "git_commit" : "0a0edcacb5368517d249210022363bd9265f1bf5", + "git_remote" : "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-8-g0a0edca" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/gffread/.config.vsh.yaml b/target/nextflow/gffread/.config.vsh.yaml index c5d2d7d3..c3b8ddf8 100644 --- a/target/nextflow/gffread/.config.vsh.yaml +++ b/target/nextflow/gffread/.config.vsh.yaml @@ -685,9 +685,9 @@ build_info: output: "target/nextflow/gffread" executable: "target/nextflow/gffread/main.nf" viash_version: "0.9.0" - git_commit: "237a2e3a229ee589d1ebbc282526f87398e26f58" - git_remote: "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox" - git_tag: "v0.2.0-7-g237a2e3" + git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5" + git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox" + git_tag: "v0.2.0-8-g0a0edca" package_config: name: "biobox" version: "main" diff --git a/target/nextflow/gffread/main.nf b/target/nextflow/gffread/main.nf index efa36393..787ac45d 100644 --- a/target/nextflow/gffread/main.nf +++ b/target/nextflow/gffread/main.nf @@ -3606,9 +3606,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/gffread", "viash_version" : "0.9.0", - "git_commit" : "237a2e3a229ee589d1ebbc282526f87398e26f58", - "git_remote" : "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-7-g237a2e3" + "git_commit" : "0a0edcacb5368517d249210022363bd9265f1bf5", + "git_remote" : "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-8-g0a0edca" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/kallisto/kallisto_index/.config.vsh.yaml b/target/nextflow/kallisto/kallisto_index/.config.vsh.yaml index 58e07998..2d7d0d69 100644 --- a/target/nextflow/kallisto/kallisto_index/.config.vsh.yaml +++ b/target/nextflow/kallisto/kallisto_index/.config.vsh.yaml @@ -218,9 +218,9 @@ build_info: output: "target/nextflow/kallisto/kallisto_index" executable: "target/nextflow/kallisto/kallisto_index/main.nf" viash_version: "0.9.0" - git_commit: "237a2e3a229ee589d1ebbc282526f87398e26f58" - git_remote: "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox" - git_tag: "v0.2.0-7-g237a2e3" + git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5" + git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox" + git_tag: "v0.2.0-8-g0a0edca" package_config: name: "biobox" version: "main" diff --git a/target/nextflow/kallisto/kallisto_index/main.nf b/target/nextflow/kallisto/kallisto_index/main.nf index 0a5fd9ef..59736c14 100644 --- a/target/nextflow/kallisto/kallisto_index/main.nf +++ b/target/nextflow/kallisto/kallisto_index/main.nf @@ -3071,9 +3071,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/kallisto/kallisto_index", "viash_version" : "0.9.0", - "git_commit" : "237a2e3a229ee589d1ebbc282526f87398e26f58", - "git_remote" : "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-7-g237a2e3" + "git_commit" : "0a0edcacb5368517d249210022363bd9265f1bf5", + "git_remote" : "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-8-g0a0edca" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/kallisto/kallisto_quant/.config.vsh.yaml b/target/nextflow/kallisto/kallisto_quant/.config.vsh.yaml index 787d53f3..e4da8047 100644 --- a/target/nextflow/kallisto/kallisto_quant/.config.vsh.yaml +++ b/target/nextflow/kallisto/kallisto_quant/.config.vsh.yaml @@ -234,9 +234,9 @@ build_info: output: "target/nextflow/kallisto/kallisto_quant" executable: "target/nextflow/kallisto/kallisto_quant/main.nf" viash_version: "0.9.0" - git_commit: "237a2e3a229ee589d1ebbc282526f87398e26f58" - git_remote: "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox" - git_tag: "v0.2.0-7-g237a2e3" + git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5" + git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox" + git_tag: "v0.2.0-8-g0a0edca" package_config: name: "biobox" version: "main" diff --git a/target/nextflow/kallisto/kallisto_quant/main.nf b/target/nextflow/kallisto/kallisto_quant/main.nf index 7a447705..ee16a5ed 100644 --- a/target/nextflow/kallisto/kallisto_quant/main.nf +++ b/target/nextflow/kallisto/kallisto_quant/main.nf @@ -3092,9 +3092,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/kallisto/kallisto_quant", "viash_version" : "0.9.0", - "git_commit" : "237a2e3a229ee589d1ebbc282526f87398e26f58", - "git_remote" : "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-7-g237a2e3" + "git_commit" : "0a0edcacb5368517d249210022363bd9265f1bf5", + "git_remote" : "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-8-g0a0edca" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/lofreq/lofreq_call/.config.vsh.yaml b/target/nextflow/lofreq/lofreq_call/.config.vsh.yaml index ddcec3e4..4ba17d53 100644 --- a/target/nextflow/lofreq/lofreq_call/.config.vsh.yaml +++ b/target/nextflow/lofreq/lofreq_call/.config.vsh.yaml @@ -507,9 +507,9 @@ build_info: output: "target/nextflow/lofreq/lofreq_call" executable: "target/nextflow/lofreq/lofreq_call/main.nf" viash_version: "0.9.0" - git_commit: "237a2e3a229ee589d1ebbc282526f87398e26f58" - git_remote: "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox" - git_tag: "v0.2.0-7-g237a2e3" + git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5" + git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox" + git_tag: "v0.2.0-8-g0a0edca" package_config: name: "biobox" version: "main" diff --git a/target/nextflow/lofreq/lofreq_call/main.nf b/target/nextflow/lofreq/lofreq_call/main.nf index 042937c9..f67cfb3f 100644 --- a/target/nextflow/lofreq/lofreq_call/main.nf +++ b/target/nextflow/lofreq/lofreq_call/main.nf @@ -3414,9 +3414,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/lofreq/lofreq_call", "viash_version" : "0.9.0", - "git_commit" : "237a2e3a229ee589d1ebbc282526f87398e26f58", - "git_remote" : "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-7-g237a2e3" + "git_commit" : "0a0edcacb5368517d249210022363bd9265f1bf5", + "git_remote" : "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-8-g0a0edca" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/lofreq/lofreq_indelqual/.config.vsh.yaml b/target/nextflow/lofreq/lofreq_indelqual/.config.vsh.yaml index c11b0bfc..f1bb8566 100644 --- a/target/nextflow/lofreq/lofreq_indelqual/.config.vsh.yaml +++ b/target/nextflow/lofreq/lofreq_indelqual/.config.vsh.yaml @@ -215,9 +215,9 @@ build_info: output: "target/nextflow/lofreq/lofreq_indelqual" executable: "target/nextflow/lofreq/lofreq_indelqual/main.nf" viash_version: "0.9.0" - git_commit: "237a2e3a229ee589d1ebbc282526f87398e26f58" - git_remote: "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox" - git_tag: "v0.2.0-7-g237a2e3" + git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5" + git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox" + git_tag: "v0.2.0-8-g0a0edca" package_config: name: "biobox" version: "main" diff --git a/target/nextflow/lofreq/lofreq_indelqual/main.nf b/target/nextflow/lofreq/lofreq_indelqual/main.nf index 9e54eb45..a16bf811 100644 --- a/target/nextflow/lofreq/lofreq_indelqual/main.nf +++ b/target/nextflow/lofreq/lofreq_indelqual/main.nf @@ -3077,9 +3077,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/lofreq/lofreq_indelqual", "viash_version" : "0.9.0", - "git_commit" : "237a2e3a229ee589d1ebbc282526f87398e26f58", - "git_remote" : "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-7-g237a2e3" + "git_commit" : "0a0edcacb5368517d249210022363bd9265f1bf5", + "git_remote" : "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-8-g0a0edca" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/multiqc/.config.vsh.yaml b/target/nextflow/multiqc/.config.vsh.yaml index 2dd9867f..0f3753c7 100644 --- a/target/nextflow/multiqc/.config.vsh.yaml +++ b/target/nextflow/multiqc/.config.vsh.yaml @@ -456,9 +456,9 @@ build_info: output: "target/nextflow/multiqc" executable: "target/nextflow/multiqc/main.nf" viash_version: "0.9.0" - git_commit: "237a2e3a229ee589d1ebbc282526f87398e26f58" - git_remote: "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox" - git_tag: "v0.2.0-7-g237a2e3" + git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5" + git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox" + git_tag: "v0.2.0-8-g0a0edca" package_config: name: "biobox" version: "main" diff --git a/target/nextflow/multiqc/main.nf b/target/nextflow/multiqc/main.nf index 07d1a308..4be7cb56 100644 --- a/target/nextflow/multiqc/main.nf +++ b/target/nextflow/multiqc/main.nf @@ -3366,9 +3366,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/multiqc", "viash_version" : "0.9.0", - "git_commit" : "237a2e3a229ee589d1ebbc282526f87398e26f58", - "git_remote" : "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-7-g237a2e3" + "git_commit" : "0a0edcacb5368517d249210022363bd9265f1bf5", + "git_remote" : "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-8-g0a0edca" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/pear/.config.vsh.yaml b/target/nextflow/pear/.config.vsh.yaml index 36a077c1..1ead019e 100644 --- a/target/nextflow/pear/.config.vsh.yaml +++ b/target/nextflow/pear/.config.vsh.yaml @@ -398,9 +398,9 @@ build_info: output: "target/nextflow/pear" executable: "target/nextflow/pear/main.nf" viash_version: "0.9.0" - git_commit: "237a2e3a229ee589d1ebbc282526f87398e26f58" - git_remote: "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox" - git_tag: "v0.2.0-7-g237a2e3" + git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5" + git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox" + git_tag: "v0.2.0-8-g0a0edca" package_config: name: "biobox" version: "main" diff --git a/target/nextflow/pear/main.nf b/target/nextflow/pear/main.nf index f802f4d6..9f1a62b3 100644 --- a/target/nextflow/pear/main.nf +++ b/target/nextflow/pear/main.nf @@ -3259,9 +3259,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/pear", "viash_version" : "0.9.0", - "git_commit" : "237a2e3a229ee589d1ebbc282526f87398e26f58", - "git_remote" : "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-7-g237a2e3" + "git_commit" : "0a0edcacb5368517d249210022363bd9265f1bf5", + "git_remote" : "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-8-g0a0edca" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/qualimap/qualimap_rnaseq/.config.vsh.yaml b/target/nextflow/qualimap/qualimap_rnaseq/.config.vsh.yaml index 523044e1..c4fcacb9 100644 --- a/target/nextflow/qualimap/qualimap_rnaseq/.config.vsh.yaml +++ b/target/nextflow/qualimap/qualimap_rnaseq/.config.vsh.yaml @@ -264,9 +264,9 @@ build_info: output: "target/nextflow/qualimap/qualimap_rnaseq" executable: "target/nextflow/qualimap/qualimap_rnaseq/main.nf" viash_version: "0.9.0" - git_commit: "237a2e3a229ee589d1ebbc282526f87398e26f58" - git_remote: "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox" - git_tag: "v0.2.0-7-g237a2e3" + git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5" + git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox" + git_tag: "v0.2.0-8-g0a0edca" package_config: name: "biobox" version: "main" diff --git a/target/nextflow/qualimap/qualimap_rnaseq/main.nf b/target/nextflow/qualimap/qualimap_rnaseq/main.nf index 95834759..2c7360c6 100644 --- a/target/nextflow/qualimap/qualimap_rnaseq/main.nf +++ b/target/nextflow/qualimap/qualimap_rnaseq/main.nf @@ -3129,9 +3129,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/qualimap/qualimap_rnaseq", "viash_version" : "0.9.0", - "git_commit" : "237a2e3a229ee589d1ebbc282526f87398e26f58", - "git_remote" : "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-7-g237a2e3" + "git_commit" : "0a0edcacb5368517d249210022363bd9265f1bf5", + "git_remote" : "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-8-g0a0edca" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/rsem/rsem_calculate_expression/.config.vsh.yaml b/target/nextflow/rsem/rsem_calculate_expression/.config.vsh.yaml index 770bd1e2..923c27f6 100644 --- a/target/nextflow/rsem/rsem_calculate_expression/.config.vsh.yaml +++ b/target/nextflow/rsem/rsem_calculate_expression/.config.vsh.yaml @@ -852,9 +852,9 @@ build_info: output: "target/nextflow/rsem/rsem_calculate_expression" executable: "target/nextflow/rsem/rsem_calculate_expression/main.nf" viash_version: "0.9.0" - git_commit: "237a2e3a229ee589d1ebbc282526f87398e26f58" - git_remote: "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox" - git_tag: "v0.2.0-7-g237a2e3" + git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5" + git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox" + git_tag: "v0.2.0-8-g0a0edca" package_config: name: "biobox" version: "main" diff --git a/target/nextflow/rsem/rsem_calculate_expression/main.nf b/target/nextflow/rsem/rsem_calculate_expression/main.nf index 9f86e055..8261addf 100644 --- a/target/nextflow/rsem/rsem_calculate_expression/main.nf +++ b/target/nextflow/rsem/rsem_calculate_expression/main.nf @@ -3661,9 +3661,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/rsem/rsem_calculate_expression", "viash_version" : "0.9.0", - "git_commit" : "237a2e3a229ee589d1ebbc282526f87398e26f58", - "git_remote" : "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-7-g237a2e3" + "git_commit" : "0a0edcacb5368517d249210022363bd9265f1bf5", + "git_remote" : "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-8-g0a0edca" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/rsem/rsem_prepare_reference/.config.vsh.yaml b/target/nextflow/rsem/rsem_prepare_reference/.config.vsh.yaml index c2558d42..997945a0 100644 --- a/target/nextflow/rsem/rsem_prepare_reference/.config.vsh.yaml +++ b/target/nextflow/rsem/rsem_prepare_reference/.config.vsh.yaml @@ -416,9 +416,9 @@ build_info: output: "target/nextflow/rsem/rsem_prepare_reference" executable: "target/nextflow/rsem/rsem_prepare_reference/main.nf" viash_version: "0.9.0" - git_commit: "237a2e3a229ee589d1ebbc282526f87398e26f58" - git_remote: "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox" - git_tag: "v0.2.0-7-g237a2e3" + git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5" + git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox" + git_tag: "v0.2.0-8-g0a0edca" package_config: name: "biobox" version: "main" diff --git a/target/nextflow/rsem/rsem_prepare_reference/main.nf b/target/nextflow/rsem/rsem_prepare_reference/main.nf index 6d73a041..65b5b312 100644 --- a/target/nextflow/rsem/rsem_prepare_reference/main.nf +++ b/target/nextflow/rsem/rsem_prepare_reference/main.nf @@ -3245,9 +3245,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/rsem/rsem_prepare_reference", "viash_version" : "0.9.0", - "git_commit" : "237a2e3a229ee589d1ebbc282526f87398e26f58", - "git_remote" : "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-7-g237a2e3" + "git_commit" : "0a0edcacb5368517d249210022363bd9265f1bf5", + "git_remote" : "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-8-g0a0edca" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/salmon/salmon_index/.config.vsh.yaml b/target/nextflow/salmon/salmon_index/.config.vsh.yaml index d9213eab..1c787282 100644 --- a/target/nextflow/salmon/salmon_index/.config.vsh.yaml +++ b/target/nextflow/salmon/salmon_index/.config.vsh.yaml @@ -277,9 +277,9 @@ build_info: output: "target/nextflow/salmon/salmon_index" executable: "target/nextflow/salmon/salmon_index/main.nf" viash_version: "0.9.0" - git_commit: "237a2e3a229ee589d1ebbc282526f87398e26f58" - git_remote: "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox" - git_tag: "v0.2.0-7-g237a2e3" + git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5" + git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox" + git_tag: "v0.2.0-8-g0a0edca" package_config: name: "biobox" version: "main" diff --git a/target/nextflow/salmon/salmon_index/main.nf b/target/nextflow/salmon/salmon_index/main.nf index 8f2a6ff3..2f232df3 100644 --- a/target/nextflow/salmon/salmon_index/main.nf +++ b/target/nextflow/salmon/salmon_index/main.nf @@ -3129,9 +3129,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/salmon/salmon_index", "viash_version" : "0.9.0", - "git_commit" : "237a2e3a229ee589d1ebbc282526f87398e26f58", - "git_remote" : "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-7-g237a2e3" + "git_commit" : "0a0edcacb5368517d249210022363bd9265f1bf5", + "git_remote" : "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-8-g0a0edca" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/salmon/salmon_quant/.config.vsh.yaml b/target/nextflow/salmon/salmon_quant/.config.vsh.yaml index 32d92d78..89e4163a 100644 --- a/target/nextflow/salmon/salmon_quant/.config.vsh.yaml +++ b/target/nextflow/salmon/salmon_quant/.config.vsh.yaml @@ -1173,9 +1173,9 @@ build_info: output: "target/nextflow/salmon/salmon_quant" executable: "target/nextflow/salmon/salmon_quant/main.nf" viash_version: "0.9.0" - git_commit: "237a2e3a229ee589d1ebbc282526f87398e26f58" - git_remote: "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox" - git_tag: "v0.2.0-7-g237a2e3" + git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5" + git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox" + git_tag: "v0.2.0-8-g0a0edca" package_config: name: "biobox" version: "main" diff --git a/target/nextflow/salmon/salmon_quant/main.nf b/target/nextflow/salmon/salmon_quant/main.nf index 10517ead..75d72cc1 100644 --- a/target/nextflow/salmon/salmon_quant/main.nf +++ b/target/nextflow/salmon/salmon_quant/main.nf @@ -3964,9 +3964,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/salmon/salmon_quant", "viash_version" : "0.9.0", - "git_commit" : "237a2e3a229ee589d1ebbc282526f87398e26f58", - "git_remote" : "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-7-g237a2e3" + "git_commit" : "0a0edcacb5368517d249210022363bd9265f1bf5", + "git_remote" : "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-8-g0a0edca" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/samtools/samtools_collate/.config.vsh.yaml b/target/nextflow/samtools/samtools_collate/.config.vsh.yaml index 5e77fd0a..a2915919 100644 --- a/target/nextflow/samtools/samtools_collate/.config.vsh.yaml +++ b/target/nextflow/samtools/samtools_collate/.config.vsh.yaml @@ -264,9 +264,9 @@ build_info: output: "target/nextflow/samtools/samtools_collate" executable: "target/nextflow/samtools/samtools_collate/main.nf" viash_version: "0.9.0" - git_commit: "237a2e3a229ee589d1ebbc282526f87398e26f58" - git_remote: "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox" - git_tag: "v0.2.0-7-g237a2e3" + git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5" + git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox" + git_tag: "v0.2.0-8-g0a0edca" package_config: name: "biobox" version: "main" diff --git a/target/nextflow/samtools/samtools_collate/main.nf b/target/nextflow/samtools/samtools_collate/main.nf index a4526533..8b301629 100644 --- a/target/nextflow/samtools/samtools_collate/main.nf +++ b/target/nextflow/samtools/samtools_collate/main.nf @@ -3140,9 +3140,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/samtools/samtools_collate", "viash_version" : "0.9.0", - "git_commit" : "237a2e3a229ee589d1ebbc282526f87398e26f58", - "git_remote" : "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-7-g237a2e3" + "git_commit" : "0a0edcacb5368517d249210022363bd9265f1bf5", + "git_remote" : "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-8-g0a0edca" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/samtools/samtools_faidx/.config.vsh.yaml b/target/nextflow/samtools/samtools_faidx/.config.vsh.yaml index abd1852b..0b8d31e9 100644 --- a/target/nextflow/samtools/samtools_faidx/.config.vsh.yaml +++ b/target/nextflow/samtools/samtools_faidx/.config.vsh.yaml @@ -243,9 +243,9 @@ build_info: output: "target/nextflow/samtools/samtools_faidx" executable: "target/nextflow/samtools/samtools_faidx/main.nf" viash_version: "0.9.0" - git_commit: "237a2e3a229ee589d1ebbc282526f87398e26f58" - git_remote: "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox" - git_tag: "v0.2.0-7-g237a2e3" + git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5" + git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox" + git_tag: "v0.2.0-8-g0a0edca" package_config: name: "biobox" version: "main" diff --git a/target/nextflow/samtools/samtools_faidx/main.nf b/target/nextflow/samtools/samtools_faidx/main.nf index e1a03382..0e90904b 100644 --- a/target/nextflow/samtools/samtools_faidx/main.nf +++ b/target/nextflow/samtools/samtools_faidx/main.nf @@ -3112,9 +3112,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/samtools/samtools_faidx", "viash_version" : "0.9.0", - "git_commit" : "237a2e3a229ee589d1ebbc282526f87398e26f58", - "git_remote" : "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-7-g237a2e3" + "git_commit" : "0a0edcacb5368517d249210022363bd9265f1bf5", + "git_remote" : "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-8-g0a0edca" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/samtools/samtools_fasta/.config.vsh.yaml b/target/nextflow/samtools/samtools_fasta/.config.vsh.yaml index 6a30688b..c0117426 100644 --- a/target/nextflow/samtools/samtools_fasta/.config.vsh.yaml +++ b/target/nextflow/samtools/samtools_fasta/.config.vsh.yaml @@ -433,9 +433,9 @@ build_info: output: "target/nextflow/samtools/samtools_fasta" executable: "target/nextflow/samtools/samtools_fasta/main.nf" viash_version: "0.9.0" - git_commit: "237a2e3a229ee589d1ebbc282526f87398e26f58" - git_remote: "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox" - git_tag: "v0.2.0-7-g237a2e3" + git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5" + git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox" + git_tag: "v0.2.0-8-g0a0edca" package_config: name: "biobox" version: "main" diff --git a/target/nextflow/samtools/samtools_fasta/main.nf b/target/nextflow/samtools/samtools_fasta/main.nf index d99f24d2..78b2bfeb 100644 --- a/target/nextflow/samtools/samtools_fasta/main.nf +++ b/target/nextflow/samtools/samtools_fasta/main.nf @@ -3304,9 +3304,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/samtools/samtools_fasta", "viash_version" : "0.9.0", - "git_commit" : "237a2e3a229ee589d1ebbc282526f87398e26f58", - "git_remote" : "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-7-g237a2e3" + "git_commit" : "0a0edcacb5368517d249210022363bd9265f1bf5", + "git_remote" : "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-8-g0a0edca" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/samtools/samtools_fastq/.config.vsh.yaml b/target/nextflow/samtools/samtools_fastq/.config.vsh.yaml index d4a96f95..3a3fa9c7 100644 --- a/target/nextflow/samtools/samtools_fastq/.config.vsh.yaml +++ b/target/nextflow/samtools/samtools_fastq/.config.vsh.yaml @@ -433,9 +433,9 @@ build_info: output: "target/nextflow/samtools/samtools_fastq" executable: "target/nextflow/samtools/samtools_fastq/main.nf" viash_version: "0.9.0" - git_commit: "237a2e3a229ee589d1ebbc282526f87398e26f58" - git_remote: "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox" - git_tag: "v0.2.0-7-g237a2e3" + git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5" + git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox" + git_tag: "v0.2.0-8-g0a0edca" package_config: name: "biobox" version: "main" diff --git a/target/nextflow/samtools/samtools_fastq/main.nf b/target/nextflow/samtools/samtools_fastq/main.nf index 00d015b8..8f49a573 100644 --- a/target/nextflow/samtools/samtools_fastq/main.nf +++ b/target/nextflow/samtools/samtools_fastq/main.nf @@ -3304,9 +3304,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/samtools/samtools_fastq", "viash_version" : "0.9.0", - "git_commit" : "237a2e3a229ee589d1ebbc282526f87398e26f58", - "git_remote" : "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-7-g237a2e3" + "git_commit" : "0a0edcacb5368517d249210022363bd9265f1bf5", + "git_remote" : "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-8-g0a0edca" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/samtools/samtools_flagstat/.config.vsh.yaml b/target/nextflow/samtools/samtools_flagstat/.config.vsh.yaml index 07f76758..9661f20d 100644 --- a/target/nextflow/samtools/samtools_flagstat/.config.vsh.yaml +++ b/target/nextflow/samtools/samtools_flagstat/.config.vsh.yaml @@ -173,9 +173,9 @@ build_info: output: "target/nextflow/samtools/samtools_flagstat" executable: "target/nextflow/samtools/samtools_flagstat/main.nf" viash_version: "0.9.0" - git_commit: "237a2e3a229ee589d1ebbc282526f87398e26f58" - git_remote: "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox" - git_tag: "v0.2.0-7-g237a2e3" + git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5" + git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox" + git_tag: "v0.2.0-8-g0a0edca" package_config: name: "biobox" version: "main" diff --git a/target/nextflow/samtools/samtools_flagstat/main.nf b/target/nextflow/samtools/samtools_flagstat/main.nf index 92aa513b..dda727f6 100644 --- a/target/nextflow/samtools/samtools_flagstat/main.nf +++ b/target/nextflow/samtools/samtools_flagstat/main.nf @@ -3028,9 +3028,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/samtools/samtools_flagstat", "viash_version" : "0.9.0", - "git_commit" : "237a2e3a229ee589d1ebbc282526f87398e26f58", - "git_remote" : "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-7-g237a2e3" + "git_commit" : "0a0edcacb5368517d249210022363bd9265f1bf5", + "git_remote" : "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-8-g0a0edca" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/samtools/samtools_idxstats/.config.vsh.yaml b/target/nextflow/samtools/samtools_idxstats/.config.vsh.yaml index ad6186ad..9ffa7411 100644 --- a/target/nextflow/samtools/samtools_idxstats/.config.vsh.yaml +++ b/target/nextflow/samtools/samtools_idxstats/.config.vsh.yaml @@ -183,9 +183,9 @@ build_info: output: "target/nextflow/samtools/samtools_idxstats" executable: "target/nextflow/samtools/samtools_idxstats/main.nf" viash_version: "0.9.0" - git_commit: "237a2e3a229ee589d1ebbc282526f87398e26f58" - git_remote: "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox" - git_tag: "v0.2.0-7-g237a2e3" + git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5" + git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox" + git_tag: "v0.2.0-8-g0a0edca" package_config: name: "biobox" version: "main" diff --git a/target/nextflow/samtools/samtools_idxstats/main.nf b/target/nextflow/samtools/samtools_idxstats/main.nf index 363a860e..1e4c453d 100644 --- a/target/nextflow/samtools/samtools_idxstats/main.nf +++ b/target/nextflow/samtools/samtools_idxstats/main.nf @@ -3040,9 +3040,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/samtools/samtools_idxstats", "viash_version" : "0.9.0", - "git_commit" : "237a2e3a229ee589d1ebbc282526f87398e26f58", - "git_remote" : "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-7-g237a2e3" + "git_commit" : "0a0edcacb5368517d249210022363bd9265f1bf5", + "git_remote" : "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-8-g0a0edca" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/samtools/samtools_index/.config.vsh.yaml b/target/nextflow/samtools/samtools_index/.config.vsh.yaml index bac115a9..f4b2af03 100644 --- a/target/nextflow/samtools/samtools_index/.config.vsh.yaml +++ b/target/nextflow/samtools/samtools_index/.config.vsh.yaml @@ -189,9 +189,9 @@ build_info: output: "target/nextflow/samtools/samtools_index" executable: "target/nextflow/samtools/samtools_index/main.nf" viash_version: "0.9.0" - git_commit: "237a2e3a229ee589d1ebbc282526f87398e26f58" - git_remote: "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox" - git_tag: "v0.2.0-7-g237a2e3" + git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5" + git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox" + git_tag: "v0.2.0-8-g0a0edca" package_config: name: "biobox" version: "main" diff --git a/target/nextflow/samtools/samtools_index/main.nf b/target/nextflow/samtools/samtools_index/main.nf index ec3720fe..1a1400df 100644 --- a/target/nextflow/samtools/samtools_index/main.nf +++ b/target/nextflow/samtools/samtools_index/main.nf @@ -3053,9 +3053,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/samtools/samtools_index", "viash_version" : "0.9.0", - "git_commit" : "237a2e3a229ee589d1ebbc282526f87398e26f58", - "git_remote" : "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-7-g237a2e3" + "git_commit" : "0a0edcacb5368517d249210022363bd9265f1bf5", + "git_remote" : "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-8-g0a0edca" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/samtools/samtools_sort/.config.vsh.yaml b/target/nextflow/samtools/samtools_sort/.config.vsh.yaml index adfc63ee..8ecb3940 100644 --- a/target/nextflow/samtools/samtools_sort/.config.vsh.yaml +++ b/target/nextflow/samtools/samtools_sort/.config.vsh.yaml @@ -332,9 +332,9 @@ build_info: output: "target/nextflow/samtools/samtools_sort" executable: "target/nextflow/samtools/samtools_sort/main.nf" viash_version: "0.9.0" - git_commit: "237a2e3a229ee589d1ebbc282526f87398e26f58" - git_remote: "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox" - git_tag: "v0.2.0-7-g237a2e3" + git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5" + git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox" + git_tag: "v0.2.0-8-g0a0edca" package_config: name: "biobox" version: "main" diff --git a/target/nextflow/samtools/samtools_sort/main.nf b/target/nextflow/samtools/samtools_sort/main.nf index b3c1d0c0..099a113b 100644 --- a/target/nextflow/samtools/samtools_sort/main.nf +++ b/target/nextflow/samtools/samtools_sort/main.nf @@ -3225,9 +3225,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/samtools/samtools_sort", "viash_version" : "0.9.0", - "git_commit" : "237a2e3a229ee589d1ebbc282526f87398e26f58", - "git_remote" : "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-7-g237a2e3" + "git_commit" : "0a0edcacb5368517d249210022363bd9265f1bf5", + "git_remote" : "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-8-g0a0edca" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/samtools/samtools_stats/.config.vsh.yaml b/target/nextflow/samtools/samtools_stats/.config.vsh.yaml index 3a38871c..60a892ca 100644 --- a/target/nextflow/samtools/samtools_stats/.config.vsh.yaml +++ b/target/nextflow/samtools/samtools_stats/.config.vsh.yaml @@ -401,9 +401,9 @@ build_info: output: "target/nextflow/samtools/samtools_stats" executable: "target/nextflow/samtools/samtools_stats/main.nf" viash_version: "0.9.0" - git_commit: "237a2e3a229ee589d1ebbc282526f87398e26f58" - git_remote: "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox" - git_tag: "v0.2.0-7-g237a2e3" + git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5" + git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox" + git_tag: "v0.2.0-8-g0a0edca" package_config: name: "biobox" version: "main" diff --git a/target/nextflow/samtools/samtools_stats/main.nf b/target/nextflow/samtools/samtools_stats/main.nf index 504fb2a6..9c85893b 100644 --- a/target/nextflow/samtools/samtools_stats/main.nf +++ b/target/nextflow/samtools/samtools_stats/main.nf @@ -3295,9 +3295,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/samtools/samtools_stats", "viash_version" : "0.9.0", - "git_commit" : "237a2e3a229ee589d1ebbc282526f87398e26f58", - "git_remote" : "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-7-g237a2e3" + "git_commit" : "0a0edcacb5368517d249210022363bd9265f1bf5", + "git_remote" : "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-8-g0a0edca" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/samtools/samtools_view/.config.vsh.yaml b/target/nextflow/samtools/samtools_view/.config.vsh.yaml index fd03b187..91c2f8cb 100644 --- a/target/nextflow/samtools/samtools_view/.config.vsh.yaml +++ b/target/nextflow/samtools/samtools_view/.config.vsh.yaml @@ -665,9 +665,9 @@ build_info: output: "target/nextflow/samtools/samtools_view" executable: "target/nextflow/samtools/samtools_view/main.nf" viash_version: "0.9.0" - git_commit: "237a2e3a229ee589d1ebbc282526f87398e26f58" - git_remote: "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox" - git_tag: "v0.2.0-7-g237a2e3" + git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5" + git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox" + git_tag: "v0.2.0-8-g0a0edca" package_config: name: "biobox" version: "main" diff --git a/target/nextflow/samtools/samtools_view/main.nf b/target/nextflow/samtools/samtools_view/main.nf index 6b003932..d3d78323 100644 --- a/target/nextflow/samtools/samtools_view/main.nf +++ b/target/nextflow/samtools/samtools_view/main.nf @@ -3476,9 +3476,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/samtools/samtools_view", "viash_version" : "0.9.0", - "git_commit" : "237a2e3a229ee589d1ebbc282526f87398e26f58", - "git_remote" : "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-7-g237a2e3" + "git_commit" : "0a0edcacb5368517d249210022363bd9265f1bf5", + "git_remote" : "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-8-g0a0edca" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/seqtk/seqtk_sample/.config.vsh.yaml b/target/nextflow/seqtk/seqtk_sample/.config.vsh.yaml index d9c5eb1c..70988287 100644 --- a/target/nextflow/seqtk/seqtk_sample/.config.vsh.yaml +++ b/target/nextflow/seqtk/seqtk_sample/.config.vsh.yaml @@ -173,9 +173,9 @@ build_info: output: "target/nextflow/seqtk/seqtk_sample" executable: "target/nextflow/seqtk/seqtk_sample/main.nf" viash_version: "0.9.0" - git_commit: "237a2e3a229ee589d1ebbc282526f87398e26f58" - git_remote: "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox" - git_tag: "v0.2.0-7-g237a2e3" + git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5" + git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox" + git_tag: "v0.2.0-8-g0a0edca" package_config: name: "biobox" version: "main" diff --git a/target/nextflow/seqtk/seqtk_sample/main.nf b/target/nextflow/seqtk/seqtk_sample/main.nf index ca550fcd..d2ca1afa 100644 --- a/target/nextflow/seqtk/seqtk_sample/main.nf +++ b/target/nextflow/seqtk/seqtk_sample/main.nf @@ -3030,9 +3030,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/seqtk/seqtk_sample", "viash_version" : "0.9.0", - "git_commit" : "237a2e3a229ee589d1ebbc282526f87398e26f58", - "git_remote" : "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-7-g237a2e3" + "git_commit" : "0a0edcacb5368517d249210022363bd9265f1bf5", + "git_remote" : "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-8-g0a0edca" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/seqtk/seqtk_subseq/.config.vsh.yaml b/target/nextflow/seqtk/seqtk_subseq/.config.vsh.yaml index 08ef61ea..bd076ee2 100644 --- a/target/nextflow/seqtk/seqtk_subseq/.config.vsh.yaml +++ b/target/nextflow/seqtk/seqtk_subseq/.config.vsh.yaml @@ -196,9 +196,9 @@ build_info: output: "target/nextflow/seqtk/seqtk_subseq" executable: "target/nextflow/seqtk/seqtk_subseq/main.nf" viash_version: "0.9.0" - git_commit: "237a2e3a229ee589d1ebbc282526f87398e26f58" - git_remote: "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox" - git_tag: "v0.2.0-7-g237a2e3" + git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5" + git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox" + git_tag: "v0.2.0-8-g0a0edca" package_config: name: "biobox" version: "main" diff --git a/target/nextflow/seqtk/seqtk_subseq/main.nf b/target/nextflow/seqtk/seqtk_subseq/main.nf index 0d699b7a..2e48148d 100644 --- a/target/nextflow/seqtk/seqtk_subseq/main.nf +++ b/target/nextflow/seqtk/seqtk_subseq/main.nf @@ -3060,9 +3060,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/seqtk/seqtk_subseq", "viash_version" : "0.9.0", - "git_commit" : "237a2e3a229ee589d1ebbc282526f87398e26f58", - "git_remote" : "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-7-g237a2e3" + "git_commit" : "0a0edcacb5368517d249210022363bd9265f1bf5", + "git_remote" : "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-8-g0a0edca" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/sortmerna/.config.vsh.yaml b/target/nextflow/sortmerna/.config.vsh.yaml index 505c1b06..e45f7ebf 100644 --- a/target/nextflow/sortmerna/.config.vsh.yaml +++ b/target/nextflow/sortmerna/.config.vsh.yaml @@ -591,9 +591,9 @@ build_info: output: "target/nextflow/sortmerna" executable: "target/nextflow/sortmerna/main.nf" viash_version: "0.9.0" - git_commit: "237a2e3a229ee589d1ebbc282526f87398e26f58" - git_remote: "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox" - git_tag: "v0.2.0-7-g237a2e3" + git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5" + git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox" + git_tag: "v0.2.0-8-g0a0edca" package_config: name: "biobox" version: "main" diff --git a/target/nextflow/sortmerna/main.nf b/target/nextflow/sortmerna/main.nf index 9f793e5e..7306f778 100644 --- a/target/nextflow/sortmerna/main.nf +++ b/target/nextflow/sortmerna/main.nf @@ -3456,9 +3456,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/sortmerna", "viash_version" : "0.9.0", - "git_commit" : "237a2e3a229ee589d1ebbc282526f87398e26f58", - "git_remote" : "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-7-g237a2e3" + "git_commit" : "0a0edcacb5368517d249210022363bd9265f1bf5", + "git_remote" : "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-8-g0a0edca" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/star/star_align_reads/.config.vsh.yaml b/target/nextflow/star/star_align_reads/.config.vsh.yaml index f0559c88..15ad8b1c 100644 --- a/target/nextflow/star/star_align_reads/.config.vsh.yaml +++ b/target/nextflow/star/star_align_reads/.config.vsh.yaml @@ -2663,9 +2663,9 @@ build_info: output: "target/nextflow/star/star_align_reads" executable: "target/nextflow/star/star_align_reads/main.nf" viash_version: "0.9.0" - git_commit: "237a2e3a229ee589d1ebbc282526f87398e26f58" - git_remote: "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox" - git_tag: "v0.2.0-7-g237a2e3" + git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5" + git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox" + git_tag: "v0.2.0-8-g0a0edca" package_config: name: "biobox" version: "main" diff --git a/target/nextflow/star/star_align_reads/main.nf b/target/nextflow/star/star_align_reads/main.nf index f98dc507..fb7cc097 100644 --- a/target/nextflow/star/star_align_reads/main.nf +++ b/target/nextflow/star/star_align_reads/main.nf @@ -5943,9 +5943,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/star/star_align_reads", "viash_version" : "0.9.0", - "git_commit" : "237a2e3a229ee589d1ebbc282526f87398e26f58", - "git_remote" : "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-7-g237a2e3" + "git_commit" : "0a0edcacb5368517d249210022363bd9265f1bf5", + "git_remote" : "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-8-g0a0edca" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/star/star_genome_generate/.config.vsh.yaml b/target/nextflow/star/star_genome_generate/.config.vsh.yaml index 0750c83c..06e8670e 100644 --- a/target/nextflow/star/star_genome_generate/.config.vsh.yaml +++ b/target/nextflow/star/star_genome_generate/.config.vsh.yaml @@ -333,9 +333,9 @@ build_info: output: "target/nextflow/star/star_genome_generate" executable: "target/nextflow/star/star_genome_generate/main.nf" viash_version: "0.9.0" - git_commit: "237a2e3a229ee589d1ebbc282526f87398e26f58" - git_remote: "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox" - git_tag: "v0.2.0-7-g237a2e3" + git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5" + git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox" + git_tag: "v0.2.0-8-g0a0edca" package_config: name: "biobox" version: "main" diff --git a/target/nextflow/star/star_genome_generate/main.nf b/target/nextflow/star/star_genome_generate/main.nf index 275f1c7f..0da0c22f 100644 --- a/target/nextflow/star/star_genome_generate/main.nf +++ b/target/nextflow/star/star_genome_generate/main.nf @@ -3195,9 +3195,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/star/star_genome_generate", "viash_version" : "0.9.0", - "git_commit" : "237a2e3a229ee589d1ebbc282526f87398e26f58", - "git_remote" : "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-7-g237a2e3" + "git_commit" : "0a0edcacb5368517d249210022363bd9265f1bf5", + "git_remote" : "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-8-g0a0edca" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/trimgalore/.config.vsh.yaml b/target/nextflow/trimgalore/.config.vsh.yaml index b1105872..8c1d23ee 100644 --- a/target/nextflow/trimgalore/.config.vsh.yaml +++ b/target/nextflow/trimgalore/.config.vsh.yaml @@ -770,9 +770,9 @@ build_info: output: "target/nextflow/trimgalore" executable: "target/nextflow/trimgalore/main.nf" viash_version: "0.9.0" - git_commit: "237a2e3a229ee589d1ebbc282526f87398e26f58" - git_remote: "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox" - git_tag: "v0.2.0-7-g237a2e3" + git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5" + git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox" + git_tag: "v0.2.0-8-g0a0edca" package_config: name: "biobox" version: "main" diff --git a/target/nextflow/trimgalore/main.nf b/target/nextflow/trimgalore/main.nf index eaf5975e..00c8ec07 100644 --- a/target/nextflow/trimgalore/main.nf +++ b/target/nextflow/trimgalore/main.nf @@ -3560,9 +3560,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/trimgalore", "viash_version" : "0.9.0", - "git_commit" : "237a2e3a229ee589d1ebbc282526f87398e26f58", - "git_remote" : "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-7-g237a2e3" + "git_commit" : "0a0edcacb5368517d249210022363bd9265f1bf5", + "git_remote" : "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-8-g0a0edca" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/umi_tools/umi_tools_dedup/.config.vsh.yaml b/target/nextflow/umi_tools/umi_tools_dedup/.config.vsh.yaml index 9face1ca..b132922b 100644 --- a/target/nextflow/umi_tools/umi_tools_dedup/.config.vsh.yaml +++ b/target/nextflow/umi_tools/umi_tools_dedup/.config.vsh.yaml @@ -611,9 +611,9 @@ build_info: output: "target/nextflow/umi_tools/umi_tools_dedup" executable: "target/nextflow/umi_tools/umi_tools_dedup/main.nf" viash_version: "0.9.0" - git_commit: "237a2e3a229ee589d1ebbc282526f87398e26f58" - git_remote: "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox" - git_tag: "v0.2.0-7-g237a2e3" + git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5" + git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox" + git_tag: "v0.2.0-8-g0a0edca" package_config: name: "biobox" version: "main" diff --git a/target/nextflow/umi_tools/umi_tools_dedup/main.nf b/target/nextflow/umi_tools/umi_tools_dedup/main.nf index 5b82dd82..824f9588 100644 --- a/target/nextflow/umi_tools/umi_tools_dedup/main.nf +++ b/target/nextflow/umi_tools/umi_tools_dedup/main.nf @@ -3487,9 +3487,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/umi_tools/umi_tools_dedup", "viash_version" : "0.9.0", - "git_commit" : "237a2e3a229ee589d1ebbc282526f87398e26f58", - "git_remote" : "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-7-g237a2e3" + "git_commit" : "0a0edcacb5368517d249210022363bd9265f1bf5", + "git_remote" : "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-8-g0a0edca" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/umi_tools/umi_tools_extract/.config.vsh.yaml b/target/nextflow/umi_tools/umi_tools_extract/.config.vsh.yaml index f3a7d47b..61814f17 100644 --- a/target/nextflow/umi_tools/umi_tools_extract/.config.vsh.yaml +++ b/target/nextflow/umi_tools/umi_tools_extract/.config.vsh.yaml @@ -449,9 +449,9 @@ build_info: output: "target/nextflow/umi_tools/umi_tools_extract" executable: "target/nextflow/umi_tools/umi_tools_extract/main.nf" viash_version: "0.9.0" - git_commit: "237a2e3a229ee589d1ebbc282526f87398e26f58" - git_remote: "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox" - git_tag: "v0.2.0-7-g237a2e3" + git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5" + git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox" + git_tag: "v0.2.0-8-g0a0edca" package_config: name: "biobox" version: "main" diff --git a/target/nextflow/umi_tools/umi_tools_extract/main.nf b/target/nextflow/umi_tools/umi_tools_extract/main.nf index 2fd49f12..8631b4b1 100644 --- a/target/nextflow/umi_tools/umi_tools_extract/main.nf +++ b/target/nextflow/umi_tools/umi_tools_extract/main.nf @@ -3316,9 +3316,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/umi_tools/umi_tools_extract", "viash_version" : "0.9.0", - "git_commit" : "237a2e3a229ee589d1ebbc282526f87398e26f58", - "git_remote" : "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-7-g237a2e3" + "git_commit" : "0a0edcacb5368517d249210022363bd9265f1bf5", + "git_remote" : "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-8-g0a0edca" }, "package_config" : { "name" : "biobox", diff --git a/target/nextflow/umi_tools/umi_tools_prepareforrsem/.config.vsh.yaml b/target/nextflow/umi_tools/umi_tools_prepareforrsem/.config.vsh.yaml index 0d779151..91b6a95e 100644 --- a/target/nextflow/umi_tools/umi_tools_prepareforrsem/.config.vsh.yaml +++ b/target/nextflow/umi_tools/umi_tools_prepareforrsem/.config.vsh.yaml @@ -256,9 +256,9 @@ build_info: output: "target/nextflow/umi_tools/umi_tools_prepareforrsem" executable: "target/nextflow/umi_tools/umi_tools_prepareforrsem/main.nf" viash_version: "0.9.0" - git_commit: "237a2e3a229ee589d1ebbc282526f87398e26f58" - git_remote: "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox" - git_tag: "v0.2.0-7-g237a2e3" + git_commit: "0a0edcacb5368517d249210022363bd9265f1bf5" + git_remote: "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox" + git_tag: "v0.2.0-8-g0a0edca" package_config: name: "biobox" version: "main" diff --git a/target/nextflow/umi_tools/umi_tools_prepareforrsem/main.nf b/target/nextflow/umi_tools/umi_tools_prepareforrsem/main.nf index 8ec6d7f5..6a10adf4 100644 --- a/target/nextflow/umi_tools/umi_tools_prepareforrsem/main.nf +++ b/target/nextflow/umi_tools/umi_tools_prepareforrsem/main.nf @@ -3121,9 +3121,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/umi_tools/umi_tools_prepareforrsem", "viash_version" : "0.9.0", - "git_commit" : "237a2e3a229ee589d1ebbc282526f87398e26f58", - "git_remote" : "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox", - "git_tag" : "v0.2.0-7-g237a2e3" + "git_commit" : "0a0edcacb5368517d249210022363bd9265f1bf5", + "git_remote" : "https://x-access-token:ghs_bIjTemwR1Wh9ikbQ1ucI3bX39xxlpm0HUaHb@github.com/viash-hub/biobox", + "git_tag" : "v0.2.0-8-g0a0edca" }, "package_config" : { "name" : "biobox",