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Build branch main with version main (b3fcd52)

Browse Source 
Build pipeline: viash-hub.biobox.main-8bbc7

Source commit: b3fcd52f20

Source message: Fix multiple components (#162)

* output index when only_build_index is true

* fix threads option

* fix argument type and add log

* fix output handling

* fix output arguments and update docker image

* fix log2stderr argument and remove discard reads option

* remove echo

* update bbsplit build index test

* add workdir

* apply suggestions from code review

* accept more than two reference files

* update changelog

* update changelog

* remove indentation

* minor fixes

* fix descriptions

---------

Co-authored-by: Robrecht Cannoodt <rcannood@gmail.com>
This commit is contained in:
CI
2024-11-08 09:40:57 +00:00
parent c71aa10adc
commit b77e39f22a
331 changed files with 1302 additions and 1206 deletions
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6
target/executable/bedtools/bedtools_sort/.config.vsh.yaml
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@@ -222,9 +222,9 @@ build_info:
output: "target/executable/bedtools/bedtools_sort"
executable: "target/executable/bedtools/bedtools_sort/bedtools_sort"
viash_version: "0.9.0"
git_commit: "06005a79b49911f1197ccfddf066fc566d5b1def"
git_remote: "https://x-access-token:ghs_s2VchCFPnGFkJ2bOWXBcoeam5dPxgi4UR0W2@github.com/viash-hub/biobox"
git_tag: "v0.2.0-22-g06005a7"
git_commit: "b3fcd52f2039056907160baf85fd84ac9c5b96be"
git_remote: "https://x-access-token:ghs_ZC0rzL9dZoRAoQQFaSrx6tuZSkKgI83FPAmh@github.com/viash-hub/biobox"
git_tag: "v0.2.0-23-gb3fcd52"
package_config:
name: "biobox"
version: "main"

4
target/executable/bedtools/bedtools_sort/bedtools_sort
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@@ -509,9 +509,9 @@ RUN echo "bedtools: \"$(bedtools --version | sed -n 's/^bedtools //p')\"" > /var
LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo"
LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_sort"
LABEL org.opencontainers.image.created="2024-11-02T09:32:20Z"
LABEL org.opencontainers.image.created="2024-11-08T09:17:40Z"
LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2"
LABEL org.opencontainers.image.revision="06005a79b49911f1197ccfddf066fc566d5b1def"
LABEL org.opencontainers.image.revision="b3fcd52f2039056907160baf85fd84ac9c5b96be"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER