vsh/biobox
1
0
Fork 0
Code Issues Pull Requests Actions Packages Projects Releases Wiki Activity

Build branch main with version main (619f1bb)

Browse Source 
Build pipeline: viash-hub.biobox.main-wqbh6

Source commit: 619f1bbb6d

Source message: Rsem-calculate-expression (#93)

* initial commit dedup

* Revert "initial commit dedup"

This reverts commit 38f586bec0ac9e4312b016e29c3aa0bd53f292b2.

* three rsem components initial commit

* update container setup

* Simplified container configuration

* temporarily remove version recording from config

* Complete config file

* add tests and complete config file

* change test dataset

* functional test, adjustements to scripts

* Update changelog

* Simplified test data and help.txt contents

* suggested changes, typos

* simplify, get rid of test_data folder

* Update CHANGELOG.md

* Update CHANGELOG.md

---------

Co-authored-by: Robrecht Cannoodt <rcannood@gmail.com>
This commit is contained in:
CI
2024-09-18 14:13:01 +00:00
parent 6f2f840fd9
commit bca90c9331
259 changed files with 12382 additions and 682 deletions
Download Patch File Download Diff File Expand all files Collapse all files

6
target/executable/seqtk/seqtk_sample/.config.vsh.yaml
View File

@@ -173,9 +173,9 @@ build_info:
output: "target/executable/seqtk/seqtk_sample"
executable: "target/executable/seqtk/seqtk_sample/seqtk_sample"
viash_version: "0.9.0"
git_commit: "7f8bcc2b3e1ffaac9778b6acb42420b19660d1a1"
git_remote: "https://x-access-token:ghs_aSDBedV4vU66pddFDN6d8UEy0ZQApn08RAsh@github.com/viash-hub/biobox"
git_tag: "v0.2.0-3-g7f8bcc2"
git_commit: "619f1bbb6d040e650233d3b0380f5298e624ecef"
git_remote: "https://x-access-token:ghs_Vi76hXSsWXZ7Nqew1pu2fjagXguaxI2jku9D@github.com/viash-hub/biobox"
git_tag: "v0.2.0-4-g619f1bb"
package_config:
name: "biobox"
version: "main"

4
target/executable/seqtk/seqtk_sample/seqtk_sample
View File

@@ -481,9 +481,9 @@ FROM quay.io/biocontainers/seqtk:1.4--he4a0461_2
ENTRYPOINT []
LABEL org.opencontainers.image.authors="Jakub Majercik"
LABEL org.opencontainers.image.description="Companion container for running component seqtk seqtk_sample"
LABEL org.opencontainers.image.created="2024-09-17T09:53:02Z"
LABEL org.opencontainers.image.created="2024-09-18T13:53:12Z"
LABEL org.opencontainers.image.source="https://github.com/lh3/seqtk/tree/v1.4"
LABEL org.opencontainers.image.revision="7f8bcc2b3e1ffaac9778b6acb42420b19660d1a1"
LABEL org.opencontainers.image.revision="619f1bbb6d040e650233d3b0380f5298e624ecef"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER