Build branch v0.2 with version 0.2.0 (5526b3e)

Build pipeline: viash-hub.biobox.v0.2-zzqh5

Source commit: 5526b3e939

Source message: Release v0.2.0

target/executable/agat/agat_convert_bed2gff/.config.vsh.yaml

@@ -1,6 +1,6 @@
 name: "agat_convert_bed2gff"
 namespace: "agat"
-version: "v0.2"
+version: "0.2.0"
 authors:
 - name: "Leïla Paquay"
   roles:
@@ -218,7 +218,7 @@ engines:
   id: "docker"
   image: "quay.io/biocontainers/agat:1.4.0--pl5321hdfd78af_0"
   target_registry: "images.viash-hub.com"
-  target_tag: "v0.2"
+  target_tag: "0.2.0"
   namespace_separator: "/"
   setup:
   - type: "docker"
@@ -234,22 +234,22 @@ build_info:
   engine: "docker|native"
   output: "target/executable/agat/agat_convert_bed2gff"
   executable: "target/executable/agat/agat_convert_bed2gff/agat_convert_bed2gff"
-  viash_version: "0.9.0-RC7"
-  git_commit: "f22ab0eab58dcd6bff89d8d73fe951953ff1260f"
+  viash_version: "0.9.0"
+  git_commit: "5526b3e939030daea80595fa98387b469329bbfa"
   git_remote: "https://github.com/viash-hub/biobox"
 package_config:
   name: "biobox"
-  version: "v0.2"
+  version: "0.2.0"
   description: "A collection of bioinformatics tools for working with sequence data.\n"
   info: null
-  viash_version: "0.9.0-RC7"
+  viash_version: "0.9.0"
   source: "src"
   target: "target"
   config_mods:
   - ".requirements.commands := ['ps']\n"
   - ".engines += { type: \"native\" }"
   - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
-  - ".engines[.type == 'docker'].target_tag := 'v0.2'"
+  - ".engines[.type == 'docker'].target_tag := '0.2.0'"
   keywords:
   - "bioinformatics"
   - "modules"

target/executable/agat/agat_convert_bed2gff/agat_convert_bed2gff

@@ -1,10 +1,10 @@
 #!/usr/bin/env bash
 
-# agat_convert_bed2gff v0.2
+# agat_convert_bed2gff 0.2.0
 # 
-# This wrapper script is auto-generated by viash 0.9.0-RC7 and is thus a
-# derivative work thereof. This software comes with ABSOLUTELY NO WARRANTY from
-# Data Intuitive.
+# This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative
+# work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
+# Intuitive.
 # 
 # The component may contain files which fall under a different license. The
 # authors of this component should specify the license in the header of such
@@ -174,7 +174,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "agat_convert_bed2gff v0.2"
+  echo "agat_convert_bed2gff 0.2.0"
   echo ""
   echo "The script takes a bed file as input, and will translate it in gff format. The"
   echo "BED format is described here The script converts 0-based, half-open [start-1,"
@@ -515,10 +515,10 @@ RUN agat --version | sed 's/AGAT\s\(.*\)/agat: "\1"/' > /var/software_versions.t
 
 LABEL org.opencontainers.image.authors="Leïla Paquay"
 LABEL org.opencontainers.image.description="Companion container for running component agat agat_convert_bed2gff"
-LABEL org.opencontainers.image.created="2024-09-12T12:36:22Z"
+LABEL org.opencontainers.image.created="2024-09-12T13:23:23Z"
 LABEL org.opencontainers.image.source="https://github.com/NBISweden/AGAT"
-LABEL org.opencontainers.image.revision="f22ab0eab58dcd6bff89d8d73fe951953ff1260f"
-LABEL org.opencontainers.image.version="v0.2"
+LABEL org.opencontainers.image.revision="5526b3e939030daea80595fa98387b469329bbfa"
+LABEL org.opencontainers.image.version="0.2.0"
 
 VIASHDOCKER
   fi
@@ -654,7 +654,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "agat_convert_bed2gff v0.2"
+            echo "agat_convert_bed2gff 0.2.0"
             exit
             ;;
         --bed)
@@ -851,7 +851,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then
 
   # determine docker image id
   if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then
-    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/biobox/agat/agat_convert_bed2gff:v0.2'
+    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/biobox/agat/agat_convert_bed2gff:0.2.0'
   fi
 
   # print dockerfile

target/executable/agat/agat_convert_embl2gff/.config.vsh.yaml

@@ -1,6 +1,6 @@
 name: "agat_convert_embl2gff"
 namespace: "agat"
-version: "v0.2"
+version: "0.2.0"
 authors:
 - name: "Leïla Paquay"
   roles:
@@ -208,7 +208,7 @@ engines:
   id: "docker"
   image: "quay.io/biocontainers/agat:1.4.0--pl5321hdfd78af_0"
   target_registry: "images.viash-hub.com"
-  target_tag: "v0.2"
+  target_tag: "0.2.0"
   namespace_separator: "/"
   setup:
   - type: "docker"
@@ -224,22 +224,22 @@ build_info:
   engine: "docker|native"
   output: "target/executable/agat/agat_convert_embl2gff"
   executable: "target/executable/agat/agat_convert_embl2gff/agat_convert_embl2gff"
-  viash_version: "0.9.0-RC7"
-  git_commit: "f22ab0eab58dcd6bff89d8d73fe951953ff1260f"
+  viash_version: "0.9.0"
+  git_commit: "5526b3e939030daea80595fa98387b469329bbfa"
   git_remote: "https://github.com/viash-hub/biobox"
 package_config:
   name: "biobox"
-  version: "v0.2"
+  version: "0.2.0"
   description: "A collection of bioinformatics tools for working with sequence data.\n"
   info: null
-  viash_version: "0.9.0-RC7"
+  viash_version: "0.9.0"
   source: "src"
   target: "target"
   config_mods:
   - ".requirements.commands := ['ps']\n"
   - ".engines += { type: \"native\" }"
   - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
-  - ".engines[.type == 'docker'].target_tag := 'v0.2'"
+  - ".engines[.type == 'docker'].target_tag := '0.2.0'"
   keywords:
   - "bioinformatics"
   - "modules"

target/executable/agat/agat_convert_embl2gff/agat_convert_embl2gff

@@ -1,10 +1,10 @@
 #!/usr/bin/env bash
 
-# agat_convert_embl2gff v0.2
+# agat_convert_embl2gff 0.2.0
 # 
-# This wrapper script is auto-generated by viash 0.9.0-RC7 and is thus a
-# derivative work thereof. This software comes with ABSOLUTELY NO WARRANTY from
-# Data Intuitive.
+# This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative
+# work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
+# Intuitive.
 # 
 # The component may contain files which fall under a different license. The
 # authors of this component should specify the license in the header of such
@@ -174,7 +174,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "agat_convert_embl2gff v0.2"
+  echo "agat_convert_embl2gff 0.2.0"
   echo ""
   echo "The script takes an EMBL file as input, and will translate it in gff format."
   echo ""
@@ -505,10 +505,10 @@ RUN agat --version | sed 's/AGAT\s\(.*\)/agat: "\1"/' > /var/software_versions.t
 
 LABEL org.opencontainers.image.authors="Leïla Paquay"
 LABEL org.opencontainers.image.description="Companion container for running component agat agat_convert_embl2gff"
-LABEL org.opencontainers.image.created="2024-09-12T12:36:22Z"
+LABEL org.opencontainers.image.created="2024-09-12T13:23:23Z"
 LABEL org.opencontainers.image.source="https://github.com/NBISweden/AGAT"
-LABEL org.opencontainers.image.revision="f22ab0eab58dcd6bff89d8d73fe951953ff1260f"
-LABEL org.opencontainers.image.version="v0.2"
+LABEL org.opencontainers.image.revision="5526b3e939030daea80595fa98387b469329bbfa"
+LABEL org.opencontainers.image.version="0.2.0"
 
 VIASHDOCKER
   fi
@@ -644,7 +644,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "agat_convert_embl2gff v0.2"
+            echo "agat_convert_embl2gff 0.2.0"
             exit
             ;;
         --embl)
@@ -858,7 +858,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then
 
   # determine docker image id
   if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then
-    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/biobox/agat/agat_convert_embl2gff:v0.2'
+    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/biobox/agat/agat_convert_embl2gff:0.2.0'
   fi
 
   # print dockerfile

target/executable/agat/agat_convert_sp_gff2gtf/.config.vsh.yaml

@@ -1,6 +1,6 @@
 name: "agat_convert_sp_gff2gtf"
 namespace: "agat"
-version: "v0.2"
+version: "0.2.0"
 authors:
 - name: "Leïla Paquay"
   roles:
@@ -211,7 +211,7 @@ engines:
   id: "docker"
   image: "quay.io/biocontainers/agat:1.4.0--pl5321hdfd78af_0"
   target_registry: "images.viash-hub.com"
-  target_tag: "v0.2"
+  target_tag: "0.2.0"
   namespace_separator: "/"
   setup:
   - type: "docker"
@@ -227,22 +227,22 @@ build_info:
   engine: "docker|native"
   output: "target/executable/agat/agat_convert_sp_gff2gtf"
   executable: "target/executable/agat/agat_convert_sp_gff2gtf/agat_convert_sp_gff2gtf"
-  viash_version: "0.9.0-RC7"
-  git_commit: "f22ab0eab58dcd6bff89d8d73fe951953ff1260f"
+  viash_version: "0.9.0"
+  git_commit: "5526b3e939030daea80595fa98387b469329bbfa"
   git_remote: "https://github.com/viash-hub/biobox"
 package_config:
   name: "biobox"
-  version: "v0.2"
+  version: "0.2.0"
   description: "A collection of bioinformatics tools for working with sequence data.\n"
   info: null
-  viash_version: "0.9.0-RC7"
+  viash_version: "0.9.0"
   source: "src"
   target: "target"
   config_mods:
   - ".requirements.commands := ['ps']\n"
   - ".engines += { type: \"native\" }"
   - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
-  - ".engines[.type == 'docker'].target_tag := 'v0.2'"
+  - ".engines[.type == 'docker'].target_tag := '0.2.0'"
   keywords:
   - "bioinformatics"
   - "modules"

target/executable/agat/agat_convert_sp_gff2gtf/agat_convert_sp_gff2gtf

@@ -1,10 +1,10 @@
 #!/usr/bin/env bash
 
-# agat_convert_sp_gff2gtf v0.2
+# agat_convert_sp_gff2gtf 0.2.0
 # 
-# This wrapper script is auto-generated by viash 0.9.0-RC7 and is thus a
-# derivative work thereof. This software comes with ABSOLUTELY NO WARRANTY from
-# Data Intuitive.
+# This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative
+# work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
+# Intuitive.
 # 
 # The component may contain files which fall under a different license. The
 # authors of this component should specify the license in the header of such
@@ -174,7 +174,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "agat_convert_sp_gff2gtf v0.2"
+  echo "agat_convert_sp_gff2gtf 0.2.0"
   echo ""
   echo "The script aims to convert any GTF/GFF file into a proper GTF file. Full"
   echo "information about the format can be found here:"
@@ -519,10 +519,10 @@ RUN agat --version | sed 's/AGAT\s\(.*\)/agat: "\1"/' > /var/software_versions.t
 
 LABEL org.opencontainers.image.authors="Leïla Paquay"
 LABEL org.opencontainers.image.description="Companion container for running component agat agat_convert_sp_gff2gtf"
-LABEL org.opencontainers.image.created="2024-09-12T12:36:23Z"
+LABEL org.opencontainers.image.created="2024-09-12T13:23:23Z"
 LABEL org.opencontainers.image.source="https://github.com/NBISweden/AGAT"
-LABEL org.opencontainers.image.revision="f22ab0eab58dcd6bff89d8d73fe951953ff1260f"
-LABEL org.opencontainers.image.version="v0.2"
+LABEL org.opencontainers.image.revision="5526b3e939030daea80595fa98387b469329bbfa"
+LABEL org.opencontainers.image.version="0.2.0"
 
 VIASHDOCKER
   fi
@@ -658,7 +658,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "agat_convert_sp_gff2gtf v0.2"
+            echo "agat_convert_sp_gff2gtf 0.2.0"
             exit
             ;;
         --gff)
@@ -829,7 +829,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then
 
   # determine docker image id
   if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then
-    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/biobox/agat/agat_convert_sp_gff2gtf:v0.2'
+    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/biobox/agat/agat_convert_sp_gff2gtf:0.2.0'
   fi
 
   # print dockerfile

target/executable/agat/agat_convert_sp_gff2tsv/.config.vsh.yaml

@@ -1,6 +1,6 @@
 name: "agat_convert_sp_gff2tsv"
 namespace: "agat"
-version: "v0.2"
+version: "0.2.0"
 authors:
 - name: "Leïla Paquay"
   roles:
@@ -171,7 +171,7 @@ engines:
   id: "docker"
   image: "quay.io/biocontainers/agat:1.4.0--pl5321hdfd78af_0"
   target_registry: "images.viash-hub.com"
-  target_tag: "v0.2"
+  target_tag: "0.2.0"
   namespace_separator: "/"
   setup:
   - type: "docker"
@@ -187,22 +187,22 @@ build_info:
   engine: "docker|native"
   output: "target/executable/agat/agat_convert_sp_gff2tsv"
   executable: "target/executable/agat/agat_convert_sp_gff2tsv/agat_convert_sp_gff2tsv"
-  viash_version: "0.9.0-RC7"
-  git_commit: "f22ab0eab58dcd6bff89d8d73fe951953ff1260f"
+  viash_version: "0.9.0"
+  git_commit: "5526b3e939030daea80595fa98387b469329bbfa"
   git_remote: "https://github.com/viash-hub/biobox"
 package_config:
   name: "biobox"
-  version: "v0.2"
+  version: "0.2.0"
   description: "A collection of bioinformatics tools for working with sequence data.\n"
   info: null
-  viash_version: "0.9.0-RC7"
+  viash_version: "0.9.0"
   source: "src"
   target: "target"
   config_mods:
   - ".requirements.commands := ['ps']\n"
   - ".engines += { type: \"native\" }"
   - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
-  - ".engines[.type == 'docker'].target_tag := 'v0.2'"
+  - ".engines[.type == 'docker'].target_tag := '0.2.0'"
   keywords:
   - "bioinformatics"
   - "modules"

target/executable/agat/agat_convert_sp_gff2tsv/agat_convert_sp_gff2tsv

@@ -1,10 +1,10 @@
 #!/usr/bin/env bash
 
-# agat_convert_sp_gff2tsv v0.2
+# agat_convert_sp_gff2tsv 0.2.0
 # 
-# This wrapper script is auto-generated by viash 0.9.0-RC7 and is thus a
-# derivative work thereof. This software comes with ABSOLUTELY NO WARRANTY from
-# Data Intuitive.
+# This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative
+# work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
+# Intuitive.
 # 
 # The component may contain files which fall under a different license. The
 # authors of this component should specify the license in the header of such
@@ -174,7 +174,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "agat_convert_sp_gff2tsv v0.2"
+  echo "agat_convert_sp_gff2tsv 0.2.0"
   echo ""
   echo "The script aims to convert gtf/gff file into tabulated file. Attribute's"
   echo "tags from the 9th column become column titles."
@@ -484,10 +484,10 @@ RUN agat --version | sed 's/AGAT\s\(.*\)/agat: "\1"/' > /var/software_versions.t
 
 LABEL org.opencontainers.image.authors="Leïla Paquay"
 LABEL org.opencontainers.image.description="Companion container for running component agat agat_convert_sp_gff2tsv"
-LABEL org.opencontainers.image.created="2024-09-12T12:36:22Z"
+LABEL org.opencontainers.image.created="2024-09-12T13:23:23Z"
 LABEL org.opencontainers.image.source="https://github.com/NBISweden/AGAT"
-LABEL org.opencontainers.image.revision="f22ab0eab58dcd6bff89d8d73fe951953ff1260f"
-LABEL org.opencontainers.image.version="v0.2"
+LABEL org.opencontainers.image.revision="5526b3e939030daea80595fa98387b469329bbfa"
+LABEL org.opencontainers.image.version="0.2.0"
 
 VIASHDOCKER
   fi
@@ -623,7 +623,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "agat_convert_sp_gff2tsv v0.2"
+            echo "agat_convert_sp_gff2tsv 0.2.0"
             exit
             ;;
         --gff)
@@ -777,7 +777,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then
 
   # determine docker image id
   if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then
-    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/biobox/agat/agat_convert_sp_gff2tsv:v0.2'
+    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/biobox/agat/agat_convert_sp_gff2tsv:0.2.0'
   fi
 
   # print dockerfile

target/executable/agat/agat_convert_sp_gxf2gxf/.config.vsh.yaml

@@ -1,6 +1,6 @@
 name: "agat_convert_sp_gxf2gxf"
 namespace: "agat"
-version: "v0.2"
+version: "0.2.0"
 authors:
 - name: "Leïla Paquay"
   roles:
@@ -178,7 +178,7 @@ engines:
   id: "docker"
   image: "quay.io/biocontainers/agat:1.4.0--pl5321hdfd78af_0"
   target_registry: "images.viash-hub.com"
-  target_tag: "v0.2"
+  target_tag: "0.2.0"
   namespace_separator: "/"
   setup:
   - type: "docker"
@@ -194,22 +194,22 @@ build_info:
   engine: "docker|native"
   output: "target/executable/agat/agat_convert_sp_gxf2gxf"
   executable: "target/executable/agat/agat_convert_sp_gxf2gxf/agat_convert_sp_gxf2gxf"
-  viash_version: "0.9.0-RC7"
-  git_commit: "f22ab0eab58dcd6bff89d8d73fe951953ff1260f"
+  viash_version: "0.9.0"
+  git_commit: "5526b3e939030daea80595fa98387b469329bbfa"
   git_remote: "https://github.com/viash-hub/biobox"
 package_config:
   name: "biobox"
-  version: "v0.2"
+  version: "0.2.0"
   description: "A collection of bioinformatics tools for working with sequence data.\n"
   info: null
-  viash_version: "0.9.0-RC7"
+  viash_version: "0.9.0"
   source: "src"
   target: "target"
   config_mods:
   - ".requirements.commands := ['ps']\n"
   - ".engines += { type: \"native\" }"
   - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
-  - ".engines[.type == 'docker'].target_tag := 'v0.2'"
+  - ".engines[.type == 'docker'].target_tag := '0.2.0'"
   keywords:
   - "bioinformatics"
   - "modules"

target/executable/agat/agat_convert_sp_gxf2gxf/agat_convert_sp_gxf2gxf

@@ -1,10 +1,10 @@
 #!/usr/bin/env bash
 
-# agat_convert_sp_gxf2gxf v0.2
+# agat_convert_sp_gxf2gxf 0.2.0
 # 
-# This wrapper script is auto-generated by viash 0.9.0-RC7 and is thus a
-# derivative work thereof. This software comes with ABSOLUTELY NO WARRANTY from
-# Data Intuitive.
+# This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative
+# work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
+# Intuitive.
 # 
 # The component may contain files which fall under a different license. The
 # authors of this component should specify the license in the header of such
@@ -174,7 +174,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "agat_convert_sp_gxf2gxf v0.2"
+  echo "agat_convert_sp_gxf2gxf 0.2.0"
   echo ""
   echo "This script fixes and/or standardizes any GTF/GFF file into full sorted"
   echo "GTF/GFF file. It AGAT parser removes duplicate features, fixes"
@@ -493,10 +493,10 @@ RUN agat --version | sed 's/AGAT\s\(.*\)/agat: "\1"/' > /var/software_versions.t
 
 LABEL org.opencontainers.image.authors="Leïla Paquay"
 LABEL org.opencontainers.image.description="Companion container for running component agat agat_convert_sp_gxf2gxf"
-LABEL org.opencontainers.image.created="2024-09-12T12:36:21Z"
+LABEL org.opencontainers.image.created="2024-09-12T13:23:22Z"
 LABEL org.opencontainers.image.source="https://github.com/NBISweden/AGAT"
-LABEL org.opencontainers.image.revision="f22ab0eab58dcd6bff89d8d73fe951953ff1260f"
-LABEL org.opencontainers.image.version="v0.2"
+LABEL org.opencontainers.image.revision="5526b3e939030daea80595fa98387b469329bbfa"
+LABEL org.opencontainers.image.version="0.2.0"
 
 VIASHDOCKER
   fi
@@ -632,7 +632,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "agat_convert_sp_gxf2gxf v0.2"
+            echo "agat_convert_sp_gxf2gxf 0.2.0"
             exit
             ;;
         --gxf)
@@ -786,7 +786,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then
 
   # determine docker image id
   if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then
-    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/biobox/agat/agat_convert_sp_gxf2gxf:v0.2'
+    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/biobox/agat/agat_convert_sp_gxf2gxf:0.2.0'
   fi
 
   # print dockerfile

target/executable/arriba/.config.vsh.yaml

@@ -1,5 +1,5 @@
 name: "arriba"
-version: "v0.2"
+version: "0.2.0"
 authors:
 - name: "Robrecht Cannoodt"
   roles:
@@ -688,7 +688,7 @@ engines:
   id: "docker"
   image: "quay.io/biocontainers/arriba:2.4.0--h0033a41_2"
   target_registry: "images.viash-hub.com"
-  target_tag: "v0.2"
+  target_tag: "0.2.0"
   namespace_separator: "/"
   setup:
   - type: "docker"
@@ -705,22 +705,22 @@ build_info:
   engine: "docker|native"
   output: "target/executable/arriba"
   executable: "target/executable/arriba/arriba"
-  viash_version: "0.9.0-RC7"
-  git_commit: "f22ab0eab58dcd6bff89d8d73fe951953ff1260f"
+  viash_version: "0.9.0"
+  git_commit: "5526b3e939030daea80595fa98387b469329bbfa"
   git_remote: "https://github.com/viash-hub/biobox"
 package_config:
   name: "biobox"
-  version: "v0.2"
+  version: "0.2.0"
   description: "A collection of bioinformatics tools for working with sequence data.\n"
   info: null
-  viash_version: "0.9.0-RC7"
+  viash_version: "0.9.0"
   source: "src"
   target: "target"
   config_mods:
   - ".requirements.commands := ['ps']\n"
   - ".engines += { type: \"native\" }"
   - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
-  - ".engines[.type == 'docker'].target_tag := 'v0.2'"
+  - ".engines[.type == 'docker'].target_tag := '0.2.0'"
   keywords:
   - "bioinformatics"
   - "modules"

target/executable/arriba/arriba

@@ -1,10 +1,10 @@
 #!/usr/bin/env bash
 
-# arriba v0.2
+# arriba 0.2.0
 # 
-# This wrapper script is auto-generated by viash 0.9.0-RC7 and is thus a
-# derivative work thereof. This software comes with ABSOLUTELY NO WARRANTY from
-# Data Intuitive.
+# This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative
+# work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
+# Intuitive.
 # 
 # The component may contain files which fall under a different license. The
 # authors of this component should specify the license in the header of such
@@ -174,7 +174,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "arriba v0.2"
+  echo "arriba 0.2.0"
   echo ""
   echo "Detect gene fusions from RNA-Seq data"
   echo ""
@@ -754,10 +754,10 @@ RUN arriba -h | grep 'Version:' 2>&1 |  sed 's/Version:\s\(.*\)/arriba: "\1"/' >
 
 LABEL org.opencontainers.image.authors="Robrecht Cannoodt"
 LABEL org.opencontainers.image.description="Companion container for running component arriba"
-LABEL org.opencontainers.image.created="2024-09-12T12:36:24Z"
+LABEL org.opencontainers.image.created="2024-09-12T13:23:25Z"
 LABEL org.opencontainers.image.source="https://github.com/suhrig/arriba"
-LABEL org.opencontainers.image.revision="f22ab0eab58dcd6bff89d8d73fe951953ff1260f"
-LABEL org.opencontainers.image.version="v0.2"
+LABEL org.opencontainers.image.revision="5526b3e939030daea80595fa98387b469329bbfa"
+LABEL org.opencontainers.image.version="0.2.0"
 
 VIASHDOCKER
   fi
@@ -893,7 +893,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "arriba v0.2"
+            echo "arriba 0.2.0"
             exit
             ;;
         --bam)
@@ -1619,7 +1619,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then
 
   # determine docker image id
   if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then
-    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/biobox/arriba:v0.2'
+    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/biobox/arriba:0.2.0'
   fi
 
   # print dockerfile

target/executable/bcftools/bcftools_sort/.config.vsh.yaml

@@ -1,6 +1,6 @@
 name: "bcftools_sort"
 namespace: "bcftools"
-version: "v0.2"
+version: "0.2.0"
 authors:
 - name: "Theodoro Gasperin Terra Camargo"
   roles:
@@ -162,7 +162,7 @@ engines:
   id: "docker"
   image: "debian:stable-slim"
   target_registry: "images.viash-hub.com"
-  target_tag: "v0.2"
+  target_tag: "0.2.0"
   namespace_separator: "/"
   setup:
   - type: "apt"
@@ -184,22 +184,22 @@ build_info:
   engine: "docker|native"
   output: "target/executable/bcftools/bcftools_sort"
   executable: "target/executable/bcftools/bcftools_sort/bcftools_sort"
-  viash_version: "0.9.0-RC7"
-  git_commit: "f22ab0eab58dcd6bff89d8d73fe951953ff1260f"
+  viash_version: "0.9.0"
+  git_commit: "5526b3e939030daea80595fa98387b469329bbfa"
   git_remote: "https://github.com/viash-hub/biobox"
 package_config:
   name: "biobox"
-  version: "v0.2"
+  version: "0.2.0"
   description: "A collection of bioinformatics tools for working with sequence data.\n"
   info: null
-  viash_version: "0.9.0-RC7"
+  viash_version: "0.9.0"
   source: "src"
   target: "target"
   config_mods:
   - ".requirements.commands := ['ps']\n"
   - ".engines += { type: \"native\" }"
   - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
-  - ".engines[.type == 'docker'].target_tag := 'v0.2'"
+  - ".engines[.type == 'docker'].target_tag := '0.2.0'"
   keywords:
   - "bioinformatics"
   - "modules"

target/executable/bcftools/bcftools_sort/bcftools_sort

@@ -1,10 +1,10 @@
 #!/usr/bin/env bash
 
-# bcftools_sort v0.2
+# bcftools_sort 0.2.0
 # 
-# This wrapper script is auto-generated by viash 0.9.0-RC7 and is thus a
-# derivative work thereof. This software comes with ABSOLUTELY NO WARRANTY from
-# Data Intuitive.
+# This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative
+# work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
+# Intuitive.
 # 
 # The component may contain files which fall under a different license. The
 # authors of this component should specify the license in the header of such
@@ -174,7 +174,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "bcftools_sort v0.2"
+  echo "bcftools_sort 0.2.0"
   echo ""
   echo "Sorts VCF/BCF files."
   echo ""
@@ -483,10 +483,10 @@ RUN echo "bcftools: \"$(bcftools --version | grep 'bcftools' | sed -n 's/^bcftoo
 
 LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo"
 LABEL org.opencontainers.image.description="Companion container for running component bcftools bcftools_sort"
-LABEL org.opencontainers.image.created="2024-09-12T12:36:17Z"
+LABEL org.opencontainers.image.created="2024-09-12T13:23:18Z"
 LABEL org.opencontainers.image.source="https://github.com/samtools/bcftools"
-LABEL org.opencontainers.image.revision="f22ab0eab58dcd6bff89d8d73fe951953ff1260f"
-LABEL org.opencontainers.image.version="v0.2"
+LABEL org.opencontainers.image.revision="5526b3e939030daea80595fa98387b469329bbfa"
+LABEL org.opencontainers.image.version="0.2.0"
 
 VIASHDOCKER
   fi
@@ -622,7 +622,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "bcftools_sort v0.2"
+            echo "bcftools_sort 0.2.0"
             exit
             ;;
         --input)
@@ -764,7 +764,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then
 
   # determine docker image id
   if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then
-    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/biobox/bcftools/bcftools_sort:v0.2'
+    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/biobox/bcftools/bcftools_sort:0.2.0'
   fi
 
   # print dockerfile

target/executable/bcl_convert/.config.vsh.yaml

@@ -1,5 +1,5 @@
 name: "bcl_convert"
-version: "v0.2"
+version: "0.2.0"
 authors:
 - name: "Toni Verbeiren"
   roles:
@@ -386,7 +386,7 @@ engines:
   id: "docker"
   image: "debian:trixie-slim"
   target_registry: "images.viash-hub.com"
-  target_tag: "v0.2"
+  target_tag: "0.2.0"
   namespace_separator: "/"
   setup:
   - type: "apt"
@@ -417,22 +417,22 @@ build_info:
   engine: "docker|native"
   output: "target/executable/bcl_convert"
   executable: "target/executable/bcl_convert/bcl_convert"
-  viash_version: "0.9.0-RC7"
-  git_commit: "f22ab0eab58dcd6bff89d8d73fe951953ff1260f"
+  viash_version: "0.9.0"
+  git_commit: "5526b3e939030daea80595fa98387b469329bbfa"
   git_remote: "https://github.com/viash-hub/biobox"
 package_config:
   name: "biobox"
-  version: "v0.2"
+  version: "0.2.0"
   description: "A collection of bioinformatics tools for working with sequence data.\n"
   info: null
-  viash_version: "0.9.0-RC7"
+  viash_version: "0.9.0"
   source: "src"
   target: "target"
   config_mods:
   - ".requirements.commands := ['ps']\n"
   - ".engines += { type: \"native\" }"
   - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
-  - ".engines[.type == 'docker'].target_tag := 'v0.2'"
+  - ".engines[.type == 'docker'].target_tag := '0.2.0'"
   keywords:
   - "bioinformatics"
   - "modules"

target/executable/bcl_convert/bcl_convert

@@ -1,10 +1,10 @@
 #!/usr/bin/env bash
 
-# bcl_convert v0.2
+# bcl_convert 0.2.0
 # 
-# This wrapper script is auto-generated by viash 0.9.0-RC7 and is thus a
-# derivative work thereof. This software comes with ABSOLUTELY NO WARRANTY from
-# Data Intuitive.
+# This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative
+# work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
+# Intuitive.
 # 
 # The component may contain files which fall under a different license. The
 # authors of this component should specify the license in the header of such
@@ -175,7 +175,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "bcl_convert v0.2"
+  echo "bcl_convert 0.2.0"
   echo ""
   echo "Convert bcl files to fastq files using bcl-convert."
   echo "Information about upgrading from bcl2fastq via"
@@ -599,10 +599,10 @@ RUN echo "bcl-convert: \"$(bcl-convert -V 2>&1 >/dev/null | sed -n '/Version/ s/
 
 LABEL org.opencontainers.image.authors="Toni Verbeiren, Dorien Roosen"
 LABEL org.opencontainers.image.description="Companion container for running component bcl_convert"
-LABEL org.opencontainers.image.created="2024-09-12T12:36:23Z"
+LABEL org.opencontainers.image.created="2024-09-12T13:23:24Z"
 LABEL org.opencontainers.image.source="https://github.com/viash-hub/biobox"
-LABEL org.opencontainers.image.revision="f22ab0eab58dcd6bff89d8d73fe951953ff1260f"
-LABEL org.opencontainers.image.version="v0.2"
+LABEL org.opencontainers.image.revision="5526b3e939030daea80595fa98387b469329bbfa"
+LABEL org.opencontainers.image.version="0.2.0"
 
 VIASHDOCKER
   fi
@@ -738,7 +738,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "bcl_convert v0.2"
+            echo "bcl_convert 0.2.0"
             exit
             ;;
         --bcl_input_directory)
@@ -1100,7 +1100,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then
 
   # determine docker image id
   if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then
-    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/biobox/bcl_convert:v0.2'
+    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/biobox/bcl_convert:0.2.0'
   fi
 
   # print dockerfile

target/executable/bd_rhapsody/bd_rhapsody_make_reference/.config.vsh.yaml

@@ -1,6 +1,6 @@
 name: "bd_rhapsody_make_reference"
 namespace: "bd_rhapsody"
-version: "v0.2"
+version: "0.2.0"
 authors:
 - name: "Robrecht Cannoodt"
   roles:
@@ -243,7 +243,7 @@ engines:
   id: "docker"
   image: "bdgenomics/rhapsody:2.2.1"
   target_registry: "images.viash-hub.com"
-  target_tag: "v0.2"
+  target_tag: "0.2.0"
   namespace_separator: "/"
   setup:
   - type: "apt"
@@ -269,22 +269,22 @@ build_info:
   engine: "docker|native"
   output: "target/executable/bd_rhapsody/bd_rhapsody_make_reference"
   executable: "target/executable/bd_rhapsody/bd_rhapsody_make_reference/bd_rhapsody_make_reference"
-  viash_version: "0.9.0-RC7"
-  git_commit: "f22ab0eab58dcd6bff89d8d73fe951953ff1260f"
+  viash_version: "0.9.0"
+  git_commit: "5526b3e939030daea80595fa98387b469329bbfa"
   git_remote: "https://github.com/viash-hub/biobox"
 package_config:
   name: "biobox"
-  version: "v0.2"
+  version: "0.2.0"
   description: "A collection of bioinformatics tools for working with sequence data.\n"
   info: null
-  viash_version: "0.9.0-RC7"
+  viash_version: "0.9.0"
   source: "src"
   target: "target"
   config_mods:
   - ".requirements.commands := ['ps']\n"
   - ".engines += { type: \"native\" }"
   - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
-  - ".engines[.type == 'docker'].target_tag := 'v0.2'"
+  - ".engines[.type == 'docker'].target_tag := '0.2.0'"
   keywords:
   - "bioinformatics"
   - "modules"

target/executable/bd_rhapsody/bd_rhapsody_make_reference/bd_rhapsody_make_reference

@@ -1,10 +1,10 @@
 #!/usr/bin/env bash
 
-# bd_rhapsody_make_reference v0.2
+# bd_rhapsody_make_reference 0.2.0
 # 
-# This wrapper script is auto-generated by viash 0.9.0-RC7 and is thus a
-# derivative work thereof. This software comes with ABSOLUTELY NO WARRANTY from
-# Data Intuitive.
+# This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative
+# work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
+# Intuitive.
 # 
 # The component may contain files which fall under a different license. The
 # authors of this component should specify the license in the header of such
@@ -175,7 +175,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "bd_rhapsody_make_reference v0.2"
+  echo "bd_rhapsody_make_reference 0.2.0"
   echo ""
   echo "The Reference Files Generator creates an archive containing Genome Index"
   echo "and Transcriptome annotation files needed for the BD Rhapsody Sequencing"
@@ -549,10 +549,10 @@ RUN echo "bdgenomics/rhapsody: 2.2.1" > /var/software_versions.txt
 
 LABEL org.opencontainers.image.authors="Robrecht Cannoodt, Weiwei Schultz"
 LABEL org.opencontainers.image.description="Companion container for running component bd_rhapsody bd_rhapsody_make_reference"
-LABEL org.opencontainers.image.created="2024-09-12T12:36:26Z"
+LABEL org.opencontainers.image.created="2024-09-12T13:23:27Z"
 LABEL org.opencontainers.image.source="https://bitbucket.org/CRSwDev/cwl/src/master/v2.2.1/Extra_Utilities/"
-LABEL org.opencontainers.image.revision="f22ab0eab58dcd6bff89d8d73fe951953ff1260f"
-LABEL org.opencontainers.image.version="v0.2"
+LABEL org.opencontainers.image.revision="5526b3e939030daea80595fa98387b469329bbfa"
+LABEL org.opencontainers.image.version="0.2.0"
 
 VIASHDOCKER
   fi
@@ -688,7 +688,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "bd_rhapsody_make_reference v0.2"
+            echo "bd_rhapsody_make_reference 0.2.0"
             exit
             ;;
         --genome_fasta)
@@ -879,7 +879,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then
 
   # determine docker image id
   if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then
-    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/biobox/bd_rhapsody/bd_rhapsody_make_reference:v0.2'
+    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/biobox/bd_rhapsody/bd_rhapsody_make_reference:0.2.0'
   fi
 
   # print dockerfile

target/executable/bedtools/bedtools_bamtofastq/.config.vsh.yaml

@@ -1,6 +1,6 @@
 name: "bedtools_bamtofastq"
 namespace: "bedtools"
-version: "v0.2"
+version: "0.2.0"
 authors:
 - name: "Theodoro Gasperin Terra Camargo"
   roles:
@@ -164,7 +164,7 @@ engines:
   id: "docker"
   image: "debian:stable-slim"
   target_registry: "images.viash-hub.com"
-  target_tag: "v0.2"
+  target_tag: "0.2.0"
   namespace_separator: "/"
   setup:
   - type: "apt"
@@ -186,22 +186,22 @@ build_info:
   engine: "docker|native"
   output: "target/executable/bedtools/bedtools_bamtofastq"
   executable: "target/executable/bedtools/bedtools_bamtofastq/bedtools_bamtofastq"
-  viash_version: "0.9.0-RC7"
-  git_commit: "f22ab0eab58dcd6bff89d8d73fe951953ff1260f"
+  viash_version: "0.9.0"
+  git_commit: "5526b3e939030daea80595fa98387b469329bbfa"
   git_remote: "https://github.com/viash-hub/biobox"
 package_config:
   name: "biobox"
-  version: "v0.2"
+  version: "0.2.0"
   description: "A collection of bioinformatics tools for working with sequence data.\n"
   info: null
-  viash_version: "0.9.0-RC7"
+  viash_version: "0.9.0"
   source: "src"
   target: "target"
   config_mods:
   - ".requirements.commands := ['ps']\n"
   - ".engines += { type: \"native\" }"
   - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
-  - ".engines[.type == 'docker'].target_tag := 'v0.2'"
+  - ".engines[.type == 'docker'].target_tag := '0.2.0'"
   keywords:
   - "bioinformatics"
   - "modules"

target/executable/bedtools/bedtools_bamtofastq/bedtools_bamtofastq

@@ -1,10 +1,10 @@
 #!/usr/bin/env bash
 
-# bedtools_bamtofastq v0.2
+# bedtools_bamtofastq 0.2.0
 # 
-# This wrapper script is auto-generated by viash 0.9.0-RC7 and is thus a
-# derivative work thereof. This software comes with ABSOLUTELY NO WARRANTY from
-# Data Intuitive.
+# This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative
+# work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
+# Intuitive.
 # 
 # The component may contain files which fall under a different license. The
 # authors of this component should specify the license in the header of such
@@ -174,7 +174,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "bedtools_bamtofastq v0.2"
+  echo "bedtools_bamtofastq 0.2.0"
   echo ""
   echo "Conversion tool for extracting FASTQ records from sequence alignments in BAM"
   echo "format."
@@ -483,10 +483,10 @@ RUN echo "bedtools: \"$(bedtools --version | sed -n 's/^bedtools //p')\"" > /var
 
 LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo"
 LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_bamtofastq"
-LABEL org.opencontainers.image.created="2024-09-12T12:36:11Z"
+LABEL org.opencontainers.image.created="2024-09-12T13:23:12Z"
 LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2"
-LABEL org.opencontainers.image.revision="f22ab0eab58dcd6bff89d8d73fe951953ff1260f"
-LABEL org.opencontainers.image.version="v0.2"
+LABEL org.opencontainers.image.revision="5526b3e939030daea80595fa98387b469329bbfa"
+LABEL org.opencontainers.image.version="0.2.0"
 
 VIASHDOCKER
   fi
@@ -622,7 +622,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "bedtools_bamtofastq v0.2"
+            echo "bedtools_bamtofastq 0.2.0"
             exit
             ;;
         --input)
@@ -769,7 +769,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then
 
   # determine docker image id
   if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then
-    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/biobox/bedtools/bedtools_bamtofastq:v0.2'
+    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/biobox/bedtools/bedtools_bamtofastq:0.2.0'
   fi
 
   # print dockerfile

target/executable/bedtools/bedtools_bed12tobed6/.config.vsh.yaml

@@ -1,6 +1,6 @@
 name: "bedtools_bed12tobed6"
 namespace: "bedtools"
-version: "v0.2"
+version: "0.2.0"
 authors:
 - name: "Theodoro Gasperin Terra Camargo"
   roles:
@@ -153,7 +153,7 @@ engines:
   id: "docker"
   image: "debian:stable-slim"
   target_registry: "images.viash-hub.com"
-  target_tag: "v0.2"
+  target_tag: "0.2.0"
   namespace_separator: "/"
   setup:
   - type: "apt"
@@ -175,22 +175,22 @@ build_info:
   engine: "docker|native"
   output: "target/executable/bedtools/bedtools_bed12tobed6"
   executable: "target/executable/bedtools/bedtools_bed12tobed6/bedtools_bed12tobed6"
-  viash_version: "0.9.0-RC7"
-  git_commit: "f22ab0eab58dcd6bff89d8d73fe951953ff1260f"
+  viash_version: "0.9.0"
+  git_commit: "5526b3e939030daea80595fa98387b469329bbfa"
   git_remote: "https://github.com/viash-hub/biobox"
 package_config:
   name: "biobox"
-  version: "v0.2"
+  version: "0.2.0"
   description: "A collection of bioinformatics tools for working with sequence data.\n"
   info: null
-  viash_version: "0.9.0-RC7"
+  viash_version: "0.9.0"
   source: "src"
   target: "target"
   config_mods:
   - ".requirements.commands := ['ps']\n"
   - ".engines += { type: \"native\" }"
   - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
-  - ".engines[.type == 'docker'].target_tag := 'v0.2'"
+  - ".engines[.type == 'docker'].target_tag := '0.2.0'"
   keywords:
   - "bioinformatics"
   - "modules"

target/executable/bedtools/bedtools_bed12tobed6/bedtools_bed12tobed6

@@ -1,10 +1,10 @@
 #!/usr/bin/env bash
 
-# bedtools_bed12tobed6 v0.2
+# bedtools_bed12tobed6 0.2.0
 # 
-# This wrapper script is auto-generated by viash 0.9.0-RC7 and is thus a
-# derivative work thereof. This software comes with ABSOLUTELY NO WARRANTY from
-# Data Intuitive.
+# This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative
+# work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
+# Intuitive.
 # 
 # The component may contain files which fall under a different license. The
 # authors of this component should specify the license in the header of such
@@ -174,7 +174,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "bedtools_bed12tobed6 v0.2"
+  echo "bedtools_bed12tobed6 0.2.0"
   echo ""
   echo "Converts BED features in BED12 (a.k.a. “blocked” BED features such as genes) to"
   echo "discrete BED6 features."
@@ -480,10 +480,10 @@ RUN echo "bedtools: \"$(bedtools --version | sed -n 's/^bedtools //p')\"" > /var
 
 LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo"
 LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_bed12tobed6"
-LABEL org.opencontainers.image.created="2024-09-12T12:36:10Z"
+LABEL org.opencontainers.image.created="2024-09-12T13:23:10Z"
 LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2"
-LABEL org.opencontainers.image.revision="f22ab0eab58dcd6bff89d8d73fe951953ff1260f"
-LABEL org.opencontainers.image.version="v0.2"
+LABEL org.opencontainers.image.revision="5526b3e939030daea80595fa98387b469329bbfa"
+LABEL org.opencontainers.image.version="0.2.0"
 
 VIASHDOCKER
   fi
@@ -619,7 +619,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "bedtools_bed12tobed6 v0.2"
+            echo "bedtools_bed12tobed6 0.2.0"
             exit
             ;;
         --input)
@@ -754,7 +754,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then
 
   # determine docker image id
   if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then
-    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/biobox/bedtools/bedtools_bed12tobed6:v0.2'
+    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/biobox/bedtools/bedtools_bed12tobed6:0.2.0'
   fi
 
   # print dockerfile

target/executable/bedtools/bedtools_bedtobam/.config.vsh.yaml

@@ -1,6 +1,6 @@
 name: "bedtools_bedtobam"
 namespace: "bedtools"
-version: "v0.2"
+version: "0.2.0"
 authors:
 - name: "Theodoro Gasperin Terra Camargo"
   roles:
@@ -186,7 +186,7 @@ engines:
   id: "docker"
   image: "debian:stable-slim"
   target_registry: "images.viash-hub.com"
-  target_tag: "v0.2"
+  target_tag: "0.2.0"
   namespace_separator: "/"
   setup:
   - type: "apt"
@@ -213,22 +213,22 @@ build_info:
   engine: "docker|native"
   output: "target/executable/bedtools/bedtools_bedtobam"
   executable: "target/executable/bedtools/bedtools_bedtobam/bedtools_bedtobam"
-  viash_version: "0.9.0-RC7"
-  git_commit: "f22ab0eab58dcd6bff89d8d73fe951953ff1260f"
+  viash_version: "0.9.0"
+  git_commit: "5526b3e939030daea80595fa98387b469329bbfa"
   git_remote: "https://github.com/viash-hub/biobox"
 package_config:
   name: "biobox"
-  version: "v0.2"
+  version: "0.2.0"
   description: "A collection of bioinformatics tools for working with sequence data.\n"
   info: null
-  viash_version: "0.9.0-RC7"
+  viash_version: "0.9.0"
   source: "src"
   target: "target"
   config_mods:
   - ".requirements.commands := ['ps']\n"
   - ".engines += { type: \"native\" }"
   - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
-  - ".engines[.type == 'docker'].target_tag := 'v0.2'"
+  - ".engines[.type == 'docker'].target_tag := '0.2.0'"
   keywords:
   - "bioinformatics"
   - "modules"

target/executable/bedtools/bedtools_bedtobam/bedtools_bedtobam

@@ -1,10 +1,10 @@
 #!/usr/bin/env bash
 
-# bedtools_bedtobam v0.2
+# bedtools_bedtobam 0.2.0
 # 
-# This wrapper script is auto-generated by viash 0.9.0-RC7 and is thus a
-# derivative work thereof. This software comes with ABSOLUTELY NO WARRANTY from
-# Data Intuitive.
+# This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative
+# work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
+# Intuitive.
 # 
 # The component may contain files which fall under a different license. The
 # authors of this component should specify the license in the header of such
@@ -174,7 +174,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "bedtools_bedtobam v0.2"
+  echo "bedtools_bedtobam 0.2.0"
   echo ""
   echo "Converts feature records (bed/gff/vcf) to BAM format."
   echo ""
@@ -496,10 +496,10 @@ RUN echo "bedtools: \"$(bedtools --version | sed -n 's/^bedtools //p')\"" > /var
 
 LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo"
 LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_bedtobam"
-LABEL org.opencontainers.image.created="2024-09-12T12:36:12Z"
+LABEL org.opencontainers.image.created="2024-09-12T13:23:13Z"
 LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2"
-LABEL org.opencontainers.image.revision="f22ab0eab58dcd6bff89d8d73fe951953ff1260f"
-LABEL org.opencontainers.image.version="v0.2"
+LABEL org.opencontainers.image.revision="5526b3e939030daea80595fa98387b469329bbfa"
+LABEL org.opencontainers.image.version="0.2.0"
 
 VIASHDOCKER
   fi
@@ -635,7 +635,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "bedtools_bedtobam v0.2"
+            echo "bedtools_bedtobam 0.2.0"
             exit
             ;;
         --input)
@@ -809,7 +809,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then
 
   # determine docker image id
   if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then
-    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/biobox/bedtools/bedtools_bedtobam:v0.2'
+    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/biobox/bedtools/bedtools_bedtobam:0.2.0'
   fi
 
   # print dockerfile

target/executable/bedtools/bedtools_getfasta/.config.vsh.yaml

@@ -1,6 +1,6 @@
 name: "bedtools_getfasta"
 namespace: "bedtools"
-version: "v0.2"
+version: "0.2.0"
 authors:
 - name: "Dries Schaumont"
   roles:
@@ -209,7 +209,7 @@ engines:
   id: "docker"
   image: "debian:stable-slim"
   target_registry: "images.viash-hub.com"
-  target_tag: "v0.2"
+  target_tag: "0.2.0"
   namespace_separator: "/"
   setup:
   - type: "apt"
@@ -231,22 +231,22 @@ build_info:
   engine: "docker|native"
   output: "target/executable/bedtools/bedtools_getfasta"
   executable: "target/executable/bedtools/bedtools_getfasta/bedtools_getfasta"
-  viash_version: "0.9.0-RC7"
-  git_commit: "f22ab0eab58dcd6bff89d8d73fe951953ff1260f"
+  viash_version: "0.9.0"
+  git_commit: "5526b3e939030daea80595fa98387b469329bbfa"
   git_remote: "https://github.com/viash-hub/biobox"
 package_config:
   name: "biobox"
-  version: "v0.2"
+  version: "0.2.0"
   description: "A collection of bioinformatics tools for working with sequence data.\n"
   info: null
-  viash_version: "0.9.0-RC7"
+  viash_version: "0.9.0"
   source: "src"
   target: "target"
   config_mods:
   - ".requirements.commands := ['ps']\n"
   - ".engines += { type: \"native\" }"
   - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
-  - ".engines[.type == 'docker'].target_tag := 'v0.2'"
+  - ".engines[.type == 'docker'].target_tag := '0.2.0'"
   keywords:
   - "bioinformatics"
   - "modules"

target/executable/bedtools/bedtools_getfasta/bedtools_getfasta

@@ -1,10 +1,10 @@
 #!/usr/bin/env bash
 
-# bedtools_getfasta v0.2
+# bedtools_getfasta 0.2.0
 # 
-# This wrapper script is auto-generated by viash 0.9.0-RC7 and is thus a
-# derivative work thereof. This software comes with ABSOLUTELY NO WARRANTY from
-# Data Intuitive.
+# This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative
+# work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
+# Intuitive.
 # 
 # The component may contain files which fall under a different license. The
 # authors of this component should specify the license in the header of such
@@ -174,7 +174,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "bedtools_getfasta v0.2"
+  echo "bedtools_getfasta 0.2.0"
   echo ""
   echo "Extract sequences from a FASTA file for each of the intervals defined in a"
   echo "BED/GFF/VCF file."
@@ -526,10 +526,10 @@ RUN echo "bedtools: \"$(bedtools --version | sed -n 's/^bedtools //p')\"" > /var
 
 LABEL org.opencontainers.image.authors="Dries Schaumont"
 LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_getfasta"
-LABEL org.opencontainers.image.created="2024-09-12T12:36:10Z"
+LABEL org.opencontainers.image.created="2024-09-12T13:23:11Z"
 LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2"
-LABEL org.opencontainers.image.revision="f22ab0eab58dcd6bff89d8d73fe951953ff1260f"
-LABEL org.opencontainers.image.version="v0.2"
+LABEL org.opencontainers.image.revision="5526b3e939030daea80595fa98387b469329bbfa"
+LABEL org.opencontainers.image.version="0.2.0"
 
 VIASHDOCKER
   fi
@@ -665,7 +665,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "bedtools_getfasta v0.2"
+            echo "bedtools_getfasta 0.2.0"
             exit
             ;;
         --input_fasta)
@@ -840,7 +840,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then
 
   # determine docker image id
   if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then
-    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/biobox/bedtools/bedtools_getfasta:v0.2'
+    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/biobox/bedtools/bedtools_getfasta:0.2.0'
   fi
 
   # print dockerfile

target/executable/bedtools/bedtools_groupby/.config.vsh.yaml

@@ -1,6 +1,6 @@
 name: "bedtools_groupby"
 namespace: "bedtools"
-version: "v0.2"
+version: "0.2.0"
 authors:
 - name: "Theodoro Gasperin Terra Camargo"
   roles:
@@ -250,7 +250,7 @@ engines:
   id: "docker"
   image: "debian:stable-slim"
   target_registry: "images.viash-hub.com"
-  target_tag: "v0.2"
+  target_tag: "0.2.0"
   namespace_separator: "/"
   setup:
   - type: "apt"
@@ -272,22 +272,22 @@ build_info:
   engine: "docker|native"
   output: "target/executable/bedtools/bedtools_groupby"
   executable: "target/executable/bedtools/bedtools_groupby/bedtools_groupby"
-  viash_version: "0.9.0-RC7"
-  git_commit: "f22ab0eab58dcd6bff89d8d73fe951953ff1260f"
+  viash_version: "0.9.0"
+  git_commit: "5526b3e939030daea80595fa98387b469329bbfa"
   git_remote: "https://github.com/viash-hub/biobox"
 package_config:
   name: "biobox"
-  version: "v0.2"
+  version: "0.2.0"
   description: "A collection of bioinformatics tools for working with sequence data.\n"
   info: null
-  viash_version: "0.9.0-RC7"
+  viash_version: "0.9.0"
   source: "src"
   target: "target"
   config_mods:
   - ".requirements.commands := ['ps']\n"
   - ".engines += { type: \"native\" }"
   - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
-  - ".engines[.type == 'docker'].target_tag := 'v0.2'"
+  - ".engines[.type == 'docker'].target_tag := '0.2.0'"
   keywords:
   - "bioinformatics"
   - "modules"

target/executable/bedtools/bedtools_groupby/bedtools_groupby

@@ -1,10 +1,10 @@
 #!/usr/bin/env bash
 
-# bedtools_groupby v0.2
+# bedtools_groupby 0.2.0
 # 
-# This wrapper script is auto-generated by viash 0.9.0-RC7 and is thus a
-# derivative work thereof. This software comes with ABSOLUTELY NO WARRANTY from
-# Data Intuitive.
+# This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative
+# work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
+# Intuitive.
 # 
 # The component may contain files which fall under a different license. The
 # authors of this component should specify the license in the header of such
@@ -174,7 +174,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "bedtools_groupby v0.2"
+  echo "bedtools_groupby 0.2.0"
   echo ""
   echo "Summarizes a dataset column based upon common column groupings."
   echo "Akin to the SQL \"group by\" command."
@@ -552,10 +552,10 @@ RUN echo "bedtools: \"$(bedtools --version | sed -n 's/^bedtools //p')\"" > /var
 
 LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo"
 LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_groupby"
-LABEL org.opencontainers.image.created="2024-09-12T12:36:11Z"
+LABEL org.opencontainers.image.created="2024-09-12T13:23:12Z"
 LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2"
-LABEL org.opencontainers.image.revision="f22ab0eab58dcd6bff89d8d73fe951953ff1260f"
-LABEL org.opencontainers.image.version="v0.2"
+LABEL org.opencontainers.image.revision="5526b3e939030daea80595fa98387b469329bbfa"
+LABEL org.opencontainers.image.version="0.2.0"
 
 VIASHDOCKER
   fi
@@ -691,7 +691,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "bedtools_groupby v0.2"
+            echo "bedtools_groupby 0.2.0"
             exit
             ;;
         --input)
@@ -938,7 +938,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then
 
   # determine docker image id
   if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then
-    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/biobox/bedtools/bedtools_groupby:v0.2'
+    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/biobox/bedtools/bedtools_groupby:0.2.0'
   fi
 
   # print dockerfile

target/executable/bedtools/bedtools_intersect/.config.vsh.yaml

@@ -1,6 +1,6 @@
 name: "bedtools_intersect"
 namespace: "bedtools"
-version: "v0.2"
+version: "0.2.0"
 authors:
 - name: "Theodoro Gasperin Terra Camargo"
   roles:
@@ -387,7 +387,7 @@ engines:
   id: "docker"
   image: "debian:stable-slim"
   target_registry: "images.viash-hub.com"
-  target_tag: "v0.2"
+  target_tag: "0.2.0"
   namespace_separator: "/"
   setup:
   - type: "apt"
@@ -409,22 +409,22 @@ build_info:
   engine: "docker|native"
   output: "target/executable/bedtools/bedtools_intersect"
   executable: "target/executable/bedtools/bedtools_intersect/bedtools_intersect"
-  viash_version: "0.9.0-RC7"
-  git_commit: "f22ab0eab58dcd6bff89d8d73fe951953ff1260f"
+  viash_version: "0.9.0"
+  git_commit: "5526b3e939030daea80595fa98387b469329bbfa"
   git_remote: "https://github.com/viash-hub/biobox"
 package_config:
   name: "biobox"
-  version: "v0.2"
+  version: "0.2.0"
   description: "A collection of bioinformatics tools for working with sequence data.\n"
   info: null
-  viash_version: "0.9.0-RC7"
+  viash_version: "0.9.0"
   source: "src"
   target: "target"
   config_mods:
   - ".requirements.commands := ['ps']\n"
   - ".engines += { type: \"native\" }"
   - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
-  - ".engines[.type == 'docker'].target_tag := 'v0.2'"
+  - ".engines[.type == 'docker'].target_tag := '0.2.0'"
   keywords:
   - "bioinformatics"
   - "modules"

target/executable/bedtools/bedtools_intersect/bedtools_intersect

@@ -1,10 +1,10 @@
 #!/usr/bin/env bash
 
-# bedtools_intersect v0.2
+# bedtools_intersect 0.2.0
 # 
-# This wrapper script is auto-generated by viash 0.9.0-RC7 and is thus a
-# derivative work thereof. This software comes with ABSOLUTELY NO WARRANTY from
-# Data Intuitive.
+# This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative
+# work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
+# Intuitive.
 # 
 # The component may contain files which fall under a different license. The
 # authors of this component should specify the license in the header of such
@@ -174,7 +174,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "bedtools_intersect v0.2"
+  echo "bedtools_intersect 0.2.0"
   echo ""
   echo "bedtools intersect allows one to screen for overlaps between two sets of genomic"
   echo "features."
@@ -633,10 +633,10 @@ RUN echo "bedtools: \"$(bedtools --version | sed -n 's/^bedtools //p')\"" > /var
 
 LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo"
 LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_intersect"
-LABEL org.opencontainers.image.created="2024-09-12T12:36:10Z"
+LABEL org.opencontainers.image.created="2024-09-12T13:23:11Z"
 LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2"
-LABEL org.opencontainers.image.revision="f22ab0eab58dcd6bff89d8d73fe951953ff1260f"
-LABEL org.opencontainers.image.version="v0.2"
+LABEL org.opencontainers.image.revision="5526b3e939030daea80595fa98387b469329bbfa"
+LABEL org.opencontainers.image.version="0.2.0"
 
 VIASHDOCKER
   fi
@@ -772,7 +772,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "bedtools_intersect v0.2"
+            echo "bedtools_intersect 0.2.0"
             exit
             ;;
         --input_a)
@@ -1171,7 +1171,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then
 
   # determine docker image id
   if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then
-    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/biobox/bedtools/bedtools_intersect:v0.2'
+    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/biobox/bedtools/bedtools_intersect:0.2.0'
   fi
 
   # print dockerfile

target/executable/bedtools/bedtools_links/.config.vsh.yaml

@@ -1,6 +1,6 @@
 name: "bedtools_links"
 namespace: "bedtools"
-version: "v0.2"
+version: "0.2.0"
 authors:
 - name: "Theodoro Gasperin Terra Camargo"
   roles:
@@ -187,7 +187,7 @@ engines:
   id: "docker"
   image: "debian:stable-slim"
   target_registry: "images.viash-hub.com"
-  target_tag: "v0.2"
+  target_tag: "0.2.0"
   namespace_separator: "/"
   setup:
   - type: "apt"
@@ -209,22 +209,22 @@ build_info:
   engine: "docker|native"
   output: "target/executable/bedtools/bedtools_links"
   executable: "target/executable/bedtools/bedtools_links/bedtools_links"
-  viash_version: "0.9.0-RC7"
-  git_commit: "f22ab0eab58dcd6bff89d8d73fe951953ff1260f"
+  viash_version: "0.9.0"
+  git_commit: "5526b3e939030daea80595fa98387b469329bbfa"
   git_remote: "https://github.com/viash-hub/biobox"
 package_config:
   name: "biobox"
-  version: "v0.2"
+  version: "0.2.0"
   description: "A collection of bioinformatics tools for working with sequence data.\n"
   info: null
-  viash_version: "0.9.0-RC7"
+  viash_version: "0.9.0"
   source: "src"
   target: "target"
   config_mods:
   - ".requirements.commands := ['ps']\n"
   - ".engines += { type: \"native\" }"
   - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
-  - ".engines[.type == 'docker'].target_tag := 'v0.2'"
+  - ".engines[.type == 'docker'].target_tag := '0.2.0'"
   keywords:
   - "bioinformatics"
   - "modules"

target/executable/bedtools/bedtools_links/bedtools_links

@@ -1,10 +1,10 @@
 #!/usr/bin/env bash
 
-# bedtools_links v0.2
+# bedtools_links 0.2.0
 # 
-# This wrapper script is auto-generated by viash 0.9.0-RC7 and is thus a
-# derivative work thereof. This software comes with ABSOLUTELY NO WARRANTY from
-# Data Intuitive.
+# This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative
+# work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
+# Intuitive.
 # 
 # The component may contain files which fall under a different license. The
 # authors of this component should specify the license in the header of such
@@ -174,7 +174,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "bedtools_links v0.2"
+  echo "bedtools_links 0.2.0"
   echo ""
   echo "Creates an HTML file with links to an instance of the UCSC Genome Browser for"
   echo "all features / intervals in a file."
@@ -500,10 +500,10 @@ RUN echo "bedtools: \"$(bedtools --version | sed -n 's/^bedtools //p')\"" > /var
 
 LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo"
 LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_links"
-LABEL org.opencontainers.image.created="2024-09-12T12:36:11Z"
+LABEL org.opencontainers.image.created="2024-09-12T13:23:11Z"
 LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2"
-LABEL org.opencontainers.image.revision="f22ab0eab58dcd6bff89d8d73fe951953ff1260f"
-LABEL org.opencontainers.image.version="v0.2"
+LABEL org.opencontainers.image.revision="5526b3e939030daea80595fa98387b469329bbfa"
+LABEL org.opencontainers.image.version="0.2.0"
 
 VIASHDOCKER
   fi
@@ -639,7 +639,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "bedtools_links v0.2"
+            echo "bedtools_links 0.2.0"
             exit
             ;;
         --input)
@@ -815,7 +815,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then
 
   # determine docker image id
   if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then
-    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/biobox/bedtools/bedtools_links:v0.2'
+    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/biobox/bedtools/bedtools_links:0.2.0'
   fi
 
   # print dockerfile

target/executable/bedtools/bedtools_merge/.config.vsh.yaml

@@ -1,6 +1,6 @@
 name: "bedtools_merge"
 namespace: "bedtools"
-version: "v0.2"
+version: "0.2.0"
 authors:
 - name: "Theodoro Gasperin Terra Camargo"
   roles:
@@ -256,7 +256,7 @@ engines:
   id: "docker"
   image: "debian:stable-slim"
   target_registry: "images.viash-hub.com"
-  target_tag: "v0.2"
+  target_tag: "0.2.0"
   namespace_separator: "/"
   setup:
   - type: "apt"
@@ -278,22 +278,22 @@ build_info:
   engine: "docker|native"
   output: "target/executable/bedtools/bedtools_merge"
   executable: "target/executable/bedtools/bedtools_merge/bedtools_merge"
-  viash_version: "0.9.0-RC7"
-  git_commit: "f22ab0eab58dcd6bff89d8d73fe951953ff1260f"
+  viash_version: "0.9.0"
+  git_commit: "5526b3e939030daea80595fa98387b469329bbfa"
   git_remote: "https://github.com/viash-hub/biobox"
 package_config:
   name: "biobox"
-  version: "v0.2"
+  version: "0.2.0"
   description: "A collection of bioinformatics tools for working with sequence data.\n"
   info: null
-  viash_version: "0.9.0-RC7"
+  viash_version: "0.9.0"
   source: "src"
   target: "target"
   config_mods:
   - ".requirements.commands := ['ps']\n"
   - ".engines += { type: \"native\" }"
   - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
-  - ".engines[.type == 'docker'].target_tag := 'v0.2'"
+  - ".engines[.type == 'docker'].target_tag := '0.2.0'"
   keywords:
   - "bioinformatics"
   - "modules"

target/executable/bedtools/bedtools_merge/bedtools_merge

@@ -1,10 +1,10 @@
 #!/usr/bin/env bash
 
-# bedtools_merge v0.2
+# bedtools_merge 0.2.0
 # 
-# This wrapper script is auto-generated by viash 0.9.0-RC7 and is thus a
-# derivative work thereof. This software comes with ABSOLUTELY NO WARRANTY from
-# Data Intuitive.
+# This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative
+# work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
+# Intuitive.
 # 
 # The component may contain files which fall under a different license. The
 # authors of this component should specify the license in the header of such
@@ -174,7 +174,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "bedtools_merge v0.2"
+  echo "bedtools_merge 0.2.0"
   echo ""
   echo "Merges overlapping BED/GFF/VCF entries into a single interval."
   echo ""
@@ -558,10 +558,10 @@ RUN echo "bedtools: \"$(bedtools --version | sed -n 's/^bedtools //p')\"" > /var
 
 LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo"
 LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_merge"
-LABEL org.opencontainers.image.created="2024-09-12T12:36:09Z"
+LABEL org.opencontainers.image.created="2024-09-12T13:23:10Z"
 LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2"
-LABEL org.opencontainers.image.revision="f22ab0eab58dcd6bff89d8d73fe951953ff1260f"
-LABEL org.opencontainers.image.version="v0.2"
+LABEL org.opencontainers.image.revision="5526b3e939030daea80595fa98387b469329bbfa"
+LABEL org.opencontainers.image.version="0.2.0"
 
 VIASHDOCKER
   fi
@@ -697,7 +697,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "bedtools_merge v0.2"
+            echo "bedtools_merge 0.2.0"
             exit
             ;;
         --input)
@@ -948,7 +948,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then
 
   # determine docker image id
   if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then
-    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/biobox/bedtools/bedtools_merge:v0.2'
+    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/biobox/bedtools/bedtools_merge:0.2.0'
   fi
 
   # print dockerfile

target/executable/bedtools/bedtools_sort/.config.vsh.yaml

@@ -1,6 +1,6 @@
 name: "bedtools_sort"
 namespace: "bedtools"
-version: "v0.2"
+version: "0.2.0"
 authors:
 - name: "Theodoro Gasperin Terra Camargo"
   roles:
@@ -199,7 +199,7 @@ engines:
   id: "docker"
   image: "debian:stable-slim"
   target_registry: "images.viash-hub.com"
-  target_tag: "v0.2"
+  target_tag: "0.2.0"
   namespace_separator: "/"
   setup:
   - type: "apt"
@@ -221,22 +221,22 @@ build_info:
   engine: "docker|native"
   output: "target/executable/bedtools/bedtools_sort"
   executable: "target/executable/bedtools/bedtools_sort/bedtools_sort"
-  viash_version: "0.9.0-RC7"
-  git_commit: "f22ab0eab58dcd6bff89d8d73fe951953ff1260f"
+  viash_version: "0.9.0"
+  git_commit: "5526b3e939030daea80595fa98387b469329bbfa"
   git_remote: "https://github.com/viash-hub/biobox"
 package_config:
   name: "biobox"
-  version: "v0.2"
+  version: "0.2.0"
   description: "A collection of bioinformatics tools for working with sequence data.\n"
   info: null
-  viash_version: "0.9.0-RC7"
+  viash_version: "0.9.0"
   source: "src"
   target: "target"
   config_mods:
   - ".requirements.commands := ['ps']\n"
   - ".engines += { type: \"native\" }"
   - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
-  - ".engines[.type == 'docker'].target_tag := 'v0.2'"
+  - ".engines[.type == 'docker'].target_tag := '0.2.0'"
   keywords:
   - "bioinformatics"
   - "modules"

target/executable/bedtools/bedtools_sort/bedtools_sort

@@ -1,10 +1,10 @@
 #!/usr/bin/env bash
 
-# bedtools_sort v0.2
+# bedtools_sort 0.2.0
 # 
-# This wrapper script is auto-generated by viash 0.9.0-RC7 and is thus a
-# derivative work thereof. This software comes with ABSOLUTELY NO WARRANTY from
-# Data Intuitive.
+# This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative
+# work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
+# Intuitive.
 # 
 # The component may contain files which fall under a different license. The
 # authors of this component should specify the license in the header of such
@@ -174,7 +174,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "bedtools_sort v0.2"
+  echo "bedtools_sort 0.2.0"
   echo ""
   echo "Sorts a feature file (bed/gff/vcf) by chromosome and other criteria."
   echo ""
@@ -509,10 +509,10 @@ RUN echo "bedtools: \"$(bedtools --version | sed -n 's/^bedtools //p')\"" > /var
 
 LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo"
 LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_sort"
-LABEL org.opencontainers.image.created="2024-09-12T12:36:11Z"
+LABEL org.opencontainers.image.created="2024-09-12T13:23:12Z"
 LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2"
-LABEL org.opencontainers.image.revision="f22ab0eab58dcd6bff89d8d73fe951953ff1260f"
-LABEL org.opencontainers.image.version="v0.2"
+LABEL org.opencontainers.image.revision="5526b3e939030daea80595fa98387b469329bbfa"
+LABEL org.opencontainers.image.version="0.2.0"
 
 VIASHDOCKER
   fi
@@ -648,7 +648,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "bedtools_sort v0.2"
+            echo "bedtools_sort 0.2.0"
             exit
             ;;
         --input)
@@ -836,7 +836,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then
 
   # determine docker image id
   if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then
-    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/biobox/bedtools/bedtools_sort:v0.2'
+    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/biobox/bedtools/bedtools_sort:0.2.0'
   fi
 
   # print dockerfile

target/executable/busco/busco_download_datasets/.config.vsh.yaml

@@ -1,6 +1,6 @@
 name: "busco_download_datasets"
 namespace: "busco"
-version: "v0.2"
+version: "0.2.0"
 authors:
 - name: "Dorien Roosen"
   roles:
@@ -141,7 +141,7 @@ engines:
   id: "docker"
   image: "quay.io/biocontainers/busco:5.7.1--pyhdfd78af_0"
   target_registry: "images.viash-hub.com"
-  target_tag: "v0.2"
+  target_tag: "0.2.0"
   namespace_separator: "/"
   setup:
   - type: "docker"
@@ -157,22 +157,22 @@ build_info:
   engine: "docker|native"
   output: "target/executable/busco/busco_download_datasets"
   executable: "target/executable/busco/busco_download_datasets/busco_download_datasets"
-  viash_version: "0.9.0-RC7"
-  git_commit: "f22ab0eab58dcd6bff89d8d73fe951953ff1260f"
+  viash_version: "0.9.0"
+  git_commit: "5526b3e939030daea80595fa98387b469329bbfa"
   git_remote: "https://github.com/viash-hub/biobox"
 package_config:
   name: "biobox"
-  version: "v0.2"
+  version: "0.2.0"
   description: "A collection of bioinformatics tools for working with sequence data.\n"
   info: null
-  viash_version: "0.9.0-RC7"
+  viash_version: "0.9.0"
   source: "src"
   target: "target"
   config_mods:
   - ".requirements.commands := ['ps']\n"
   - ".engines += { type: \"native\" }"
   - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
-  - ".engines[.type == 'docker'].target_tag := 'v0.2'"
+  - ".engines[.type == 'docker'].target_tag := '0.2.0'"
   keywords:
   - "bioinformatics"
   - "modules"

target/executable/busco/busco_download_datasets/busco_download_datasets

@@ -1,10 +1,10 @@
 #!/usr/bin/env bash
 
-# busco_download_datasets v0.2
+# busco_download_datasets 0.2.0
 # 
-# This wrapper script is auto-generated by viash 0.9.0-RC7 and is thus a
-# derivative work thereof. This software comes with ABSOLUTELY NO WARRANTY from
-# Data Intuitive.
+# This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative
+# work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
+# Intuitive.
 # 
 # The component may contain files which fall under a different license. The
 # authors of this component should specify the license in the header of such
@@ -174,7 +174,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "busco_download_datasets v0.2"
+  echo "busco_download_datasets 0.2.0"
   echo ""
   echo "Downloads available busco datasets"
   echo ""
@@ -475,10 +475,10 @@ RUN busco --version | sed 's/BUSCO\s\(.*\)/busco: "\1"/' > /var/software_version
 
 LABEL org.opencontainers.image.authors="Dorien Roosen"
 LABEL org.opencontainers.image.description="Companion container for running component busco busco_download_datasets"
-LABEL org.opencontainers.image.created="2024-09-12T12:36:20Z"
+LABEL org.opencontainers.image.created="2024-09-12T13:23:21Z"
 LABEL org.opencontainers.image.source="https://gitlab.com/ezlab/busco"
-LABEL org.opencontainers.image.revision="f22ab0eab58dcd6bff89d8d73fe951953ff1260f"
-LABEL org.opencontainers.image.version="v0.2"
+LABEL org.opencontainers.image.revision="5526b3e939030daea80595fa98387b469329bbfa"
+LABEL org.opencontainers.image.version="0.2.0"
 
 VIASHDOCKER
   fi
@@ -614,7 +614,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "busco_download_datasets v0.2"
+            echo "busco_download_datasets 0.2.0"
             exit
             ;;
         --download)
@@ -727,7 +727,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then
 
   # determine docker image id
   if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then
-    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/biobox/busco/busco_download_datasets:v0.2'
+    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/biobox/busco/busco_download_datasets:0.2.0'
   fi
 
   # print dockerfile

target/executable/busco/busco_list_datasets/.config.vsh.yaml

@@ -1,6 +1,6 @@
 name: "busco_list_datasets"
 namespace: "busco"
-version: "v0.2"
+version: "0.2.0"
 authors:
 - name: "Dorien Roosen"
   roles:
@@ -128,7 +128,7 @@ engines:
   id: "docker"
   image: "quay.io/biocontainers/busco:5.7.1--pyhdfd78af_0"
   target_registry: "images.viash-hub.com"
-  target_tag: "v0.2"
+  target_tag: "0.2.0"
   namespace_separator: "/"
   setup:
   - type: "docker"
@@ -144,22 +144,22 @@ build_info:
   engine: "docker|native"
   output: "target/executable/busco/busco_list_datasets"
   executable: "target/executable/busco/busco_list_datasets/busco_list_datasets"
-  viash_version: "0.9.0-RC7"
-  git_commit: "f22ab0eab58dcd6bff89d8d73fe951953ff1260f"
+  viash_version: "0.9.0"
+  git_commit: "5526b3e939030daea80595fa98387b469329bbfa"
   git_remote: "https://github.com/viash-hub/biobox"
 package_config:
   name: "biobox"
-  version: "v0.2"
+  version: "0.2.0"
   description: "A collection of bioinformatics tools for working with sequence data.\n"
   info: null
-  viash_version: "0.9.0-RC7"
+  viash_version: "0.9.0"
   source: "src"
   target: "target"
   config_mods:
   - ".requirements.commands := ['ps']\n"
   - ".engines += { type: \"native\" }"
   - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
-  - ".engines[.type == 'docker'].target_tag := 'v0.2'"
+  - ".engines[.type == 'docker'].target_tag := '0.2.0'"
   keywords:
   - "bioinformatics"
   - "modules"

target/executable/busco/busco_list_datasets/busco_list_datasets

@@ -1,10 +1,10 @@
 #!/usr/bin/env bash
 
-# busco_list_datasets v0.2
+# busco_list_datasets 0.2.0
 # 
-# This wrapper script is auto-generated by viash 0.9.0-RC7 and is thus a
-# derivative work thereof. This software comes with ABSOLUTELY NO WARRANTY from
-# Data Intuitive.
+# This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative
+# work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
+# Intuitive.
 # 
 # The component may contain files which fall under a different license. The
 # authors of this component should specify the license in the header of such
@@ -174,7 +174,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "busco_list_datasets v0.2"
+  echo "busco_list_datasets 0.2.0"
   echo ""
   echo "Lists the available busco datasets"
   echo ""
@@ -465,10 +465,10 @@ RUN busco --version | sed 's/BUSCO\s\(.*\)/busco: "\1"/' > /var/software_version
 
 LABEL org.opencontainers.image.authors="Dorien Roosen"
 LABEL org.opencontainers.image.description="Companion container for running component busco busco_list_datasets"
-LABEL org.opencontainers.image.created="2024-09-12T12:36:20Z"
+LABEL org.opencontainers.image.created="2024-09-12T13:23:21Z"
 LABEL org.opencontainers.image.source="https://gitlab.com/ezlab/busco"
-LABEL org.opencontainers.image.revision="f22ab0eab58dcd6bff89d8d73fe951953ff1260f"
-LABEL org.opencontainers.image.version="v0.2"
+LABEL org.opencontainers.image.revision="5526b3e939030daea80595fa98387b469329bbfa"
+LABEL org.opencontainers.image.version="0.2.0"
 
 VIASHDOCKER
   fi
@@ -604,7 +604,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "busco_list_datasets v0.2"
+            echo "busco_list_datasets 0.2.0"
             exit
             ;;
         --output)
@@ -712,7 +712,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then
 
   # determine docker image id
   if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then
-    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/biobox/busco/busco_list_datasets:v0.2'
+    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/biobox/busco/busco_list_datasets:0.2.0'
   fi
 
   # print dockerfile

target/executable/busco/busco_run/.config.vsh.yaml

@@ -1,6 +1,6 @@
 name: "busco_run"
 namespace: "busco"
-version: "v0.2"
+version: "0.2.0"
 authors:
 - name: "Dorien Roosen"
   roles:
@@ -406,7 +406,7 @@ engines:
   id: "docker"
   image: "quay.io/biocontainers/busco:5.7.1--pyhdfd78af_0"
   target_registry: "images.viash-hub.com"
-  target_tag: "v0.2"
+  target_tag: "0.2.0"
   namespace_separator: "/"
   setup:
   - type: "docker"
@@ -422,22 +422,22 @@ build_info:
   engine: "docker|native"
   output: "target/executable/busco/busco_run"
   executable: "target/executable/busco/busco_run/busco_run"
-  viash_version: "0.9.0-RC7"
-  git_commit: "f22ab0eab58dcd6bff89d8d73fe951953ff1260f"
+  viash_version: "0.9.0"
+  git_commit: "5526b3e939030daea80595fa98387b469329bbfa"
   git_remote: "https://github.com/viash-hub/biobox"
 package_config:
   name: "biobox"
-  version: "v0.2"
+  version: "0.2.0"
   description: "A collection of bioinformatics tools for working with sequence data.\n"
   info: null
-  viash_version: "0.9.0-RC7"
+  viash_version: "0.9.0"
   source: "src"
   target: "target"
   config_mods:
   - ".requirements.commands := ['ps']\n"
   - ".engines += { type: \"native\" }"
   - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
-  - ".engines[.type == 'docker'].target_tag := 'v0.2'"
+  - ".engines[.type == 'docker'].target_tag := '0.2.0'"
   keywords:
   - "bioinformatics"
   - "modules"

target/executable/busco/busco_run/busco_run

@@ -1,10 +1,10 @@
 #!/usr/bin/env bash
 
-# busco_run v0.2
+# busco_run 0.2.0
 # 
-# This wrapper script is auto-generated by viash 0.9.0-RC7 and is thus a
-# derivative work thereof. This software comes with ABSOLUTELY NO WARRANTY from
-# Data Intuitive.
+# This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative
+# work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
+# Intuitive.
 # 
 # The component may contain files which fall under a different license. The
 # authors of this component should specify the license in the header of such
@@ -174,7 +174,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "busco_run v0.2"
+  echo "busco_run 0.2.0"
   echo ""
   echo "Assessment of genome assembly and annotation completeness with single copy"
   echo "orthologs"
@@ -632,10 +632,10 @@ RUN busco --version | sed 's/BUSCO\s\(.*\)/busco: "\1"/' > /var/software_version
 
 LABEL org.opencontainers.image.authors="Dorien Roosen"
 LABEL org.opencontainers.image.description="Companion container for running component busco busco_run"
-LABEL org.opencontainers.image.created="2024-09-12T12:36:21Z"
+LABEL org.opencontainers.image.created="2024-09-12T13:23:21Z"
 LABEL org.opencontainers.image.source="https://gitlab.com/ezlab/busco"
-LABEL org.opencontainers.image.revision="f22ab0eab58dcd6bff89d8d73fe951953ff1260f"
-LABEL org.opencontainers.image.version="v0.2"
+LABEL org.opencontainers.image.revision="5526b3e939030daea80595fa98387b469329bbfa"
+LABEL org.opencontainers.image.version="0.2.0"
 
 VIASHDOCKER
   fi
@@ -771,7 +771,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "busco_run v0.2"
+            echo "busco_run 0.2.0"
             exit
             ;;
         --input)
@@ -1126,7 +1126,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then
 
   # determine docker image id
   if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then
-    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/biobox/busco/busco_run:v0.2'
+    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/biobox/busco/busco_run:0.2.0'
   fi
 
   # print dockerfile

target/executable/cutadapt/.config.vsh.yaml

@@ -1,5 +1,5 @@
 name: "cutadapt"
-version: "v0.2"
+version: "0.2.0"
 authors:
 - name: "Toni Verbeiren"
   roles:
@@ -718,7 +718,7 @@ engines:
   id: "docker"
   image: "python:3.12"
   target_registry: "images.viash-hub.com"
-  target_tag: "v0.2"
+  target_tag: "0.2.0"
   namespace_separator: "/"
   setup:
   - type: "python"
@@ -739,22 +739,22 @@ build_info:
   engine: "docker|native"
   output: "target/executable/cutadapt"
   executable: "target/executable/cutadapt/cutadapt"
-  viash_version: "0.9.0-RC7"
-  git_commit: "f22ab0eab58dcd6bff89d8d73fe951953ff1260f"
+  viash_version: "0.9.0"
+  git_commit: "5526b3e939030daea80595fa98387b469329bbfa"
   git_remote: "https://github.com/viash-hub/biobox"
 package_config:
   name: "biobox"
-  version: "v0.2"
+  version: "0.2.0"
   description: "A collection of bioinformatics tools for working with sequence data.\n"
   info: null
-  viash_version: "0.9.0-RC7"
+  viash_version: "0.9.0"
   source: "src"
   target: "target"
   config_mods:
   - ".requirements.commands := ['ps']\n"
   - ".engines += { type: \"native\" }"
   - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
-  - ".engines[.type == 'docker'].target_tag := 'v0.2'"
+  - ".engines[.type == 'docker'].target_tag := '0.2.0'"
   keywords:
   - "bioinformatics"
   - "modules"

target/executable/cutadapt/cutadapt

@@ -1,10 +1,10 @@
 #!/usr/bin/env bash
 
-# cutadapt v0.2
+# cutadapt 0.2.0
 # 
-# This wrapper script is auto-generated by viash 0.9.0-RC7 and is thus a
-# derivative work thereof. This software comes with ABSOLUTELY NO WARRANTY from
-# Data Intuitive.
+# This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative
+# work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
+# Intuitive.
 # 
 # The component may contain files which fall under a different license. The
 # authors of this component should specify the license in the header of such
@@ -174,7 +174,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "cutadapt v0.2"
+  echo "cutadapt 0.2.0"
   echo ""
   echo "Cutadapt removes adapter sequences from high-throughput sequencing reads."
   echo ""
@@ -831,10 +831,10 @@ RUN cutadapt --version | sed 's/\(.*\)/cutadapt: "\1"/' > /var/software_versions
 
 LABEL org.opencontainers.image.authors="Toni Verbeiren"
 LABEL org.opencontainers.image.description="Companion container for running component cutadapt"
-LABEL org.opencontainers.image.created="2024-09-12T12:36:25Z"
+LABEL org.opencontainers.image.created="2024-09-12T13:23:26Z"
 LABEL org.opencontainers.image.source="https://github.com/marcelm/cutadapt"
-LABEL org.opencontainers.image.revision="f22ab0eab58dcd6bff89d8d73fe951953ff1260f"
-LABEL org.opencontainers.image.version="v0.2"
+LABEL org.opencontainers.image.revision="5526b3e939030daea80595fa98387b469329bbfa"
+LABEL org.opencontainers.image.version="0.2.0"
 
 VIASHDOCKER
   fi
@@ -970,7 +970,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "cutadapt v0.2"
+            echo "cutadapt 0.2.0"
             exit
             ;;
         --adapter)
@@ -1785,7 +1785,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then
 
   # determine docker image id
   if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then
-    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/biobox/cutadapt:v0.2'
+    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/biobox/cutadapt:0.2.0'
   fi
 
   # print dockerfile

target/executable/falco/.config.vsh.yaml

@@ -1,5 +1,5 @@
 name: "falco"
-version: "v0.2"
+version: "0.2.0"
 authors:
 - name: "Toni Verbeiren"
   roles:
@@ -287,7 +287,7 @@ engines:
   id: "docker"
   image: "debian:trixie-slim"
   target_registry: "images.viash-hub.com"
-  target_tag: "v0.2"
+  target_tag: "0.2.0"
   namespace_separator: "/"
   setup:
   - type: "apt"
@@ -316,22 +316,22 @@ build_info:
   engine: "docker|native"
   output: "target/executable/falco"
   executable: "target/executable/falco/falco"
-  viash_version: "0.9.0-RC7"
-  git_commit: "f22ab0eab58dcd6bff89d8d73fe951953ff1260f"
+  viash_version: "0.9.0"
+  git_commit: "5526b3e939030daea80595fa98387b469329bbfa"
   git_remote: "https://github.com/viash-hub/biobox"
 package_config:
   name: "biobox"
-  version: "v0.2"
+  version: "0.2.0"
   description: "A collection of bioinformatics tools for working with sequence data.\n"
   info: null
-  viash_version: "0.9.0-RC7"
+  viash_version: "0.9.0"
   source: "src"
   target: "target"
   config_mods:
   - ".requirements.commands := ['ps']\n"
   - ".engines += { type: \"native\" }"
   - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
-  - ".engines[.type == 'docker'].target_tag := 'v0.2'"
+  - ".engines[.type == 'docker'].target_tag := '0.2.0'"
   keywords:
   - "bioinformatics"
   - "modules"

target/executable/falco/falco

@@ -1,10 +1,10 @@
 #!/usr/bin/env bash
 
-# falco v0.2
+# falco 0.2.0
 # 
-# This wrapper script is auto-generated by viash 0.9.0-RC7 and is thus a
-# derivative work thereof. This software comes with ABSOLUTELY NO WARRANTY from
-# Data Intuitive.
+# This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative
+# work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
+# Intuitive.
 # 
 # The component may contain files which fall under a different license. The
 # authors of this component should specify the license in the header of such
@@ -174,7 +174,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "falco v0.2"
+  echo "falco 0.2.0"
   echo ""
   echo "A C++ drop-in replacement of FastQC to assess the quality of sequence read data"
   echo ""
@@ -589,10 +589,10 @@ RUN echo "falco: \"$(falco -v | sed -n 's/^falco //p')\"" > /var/software_versio
 
 LABEL org.opencontainers.image.authors="Toni Verbeiren"
 LABEL org.opencontainers.image.description="Companion container for running component falco"
-LABEL org.opencontainers.image.created="2024-09-12T12:36:26Z"
+LABEL org.opencontainers.image.created="2024-09-12T13:23:27Z"
 LABEL org.opencontainers.image.source="https://github.com/smithlabcode/falco"
-LABEL org.opencontainers.image.revision="f22ab0eab58dcd6bff89d8d73fe951953ff1260f"
-LABEL org.opencontainers.image.version="v0.2"
+LABEL org.opencontainers.image.revision="5526b3e939030daea80595fa98387b469329bbfa"
+LABEL org.opencontainers.image.version="0.2.0"
 
 VIASHDOCKER
   fi
@@ -728,7 +728,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "falco v0.2"
+            echo "falco 0.2.0"
             exit
             ;;
         --input)
@@ -996,7 +996,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then
 
   # determine docker image id
   if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then
-    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/biobox/falco:v0.2'
+    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/biobox/falco:0.2.0'
   fi
 
   # print dockerfile

target/executable/fastp/.config.vsh.yaml

@@ -1,5 +1,5 @@
 name: "fastp"
-version: "v0.2"
+version: "0.2.0"
 authors:
 - name: "Robrecht Cannoodt"
   roles:
@@ -1066,7 +1066,7 @@ engines:
   id: "docker"
   image: "quay.io/biocontainers/fastp:0.23.4--hadf994f_2"
   target_registry: "images.viash-hub.com"
-  target_tag: "v0.2"
+  target_tag: "0.2.0"
   namespace_separator: "/"
   setup:
   - type: "docker"
@@ -1082,22 +1082,22 @@ build_info:
   engine: "docker|native"
   output: "target/executable/fastp"
   executable: "target/executable/fastp/fastp"
-  viash_version: "0.9.0-RC7"
-  git_commit: "f22ab0eab58dcd6bff89d8d73fe951953ff1260f"
+  viash_version: "0.9.0"
+  git_commit: "5526b3e939030daea80595fa98387b469329bbfa"
   git_remote: "https://github.com/viash-hub/biobox"
 package_config:
   name: "biobox"
-  version: "v0.2"
+  version: "0.2.0"
   description: "A collection of bioinformatics tools for working with sequence data.\n"
   info: null
-  viash_version: "0.9.0-RC7"
+  viash_version: "0.9.0"
   source: "src"
   target: "target"
   config_mods:
   - ".requirements.commands := ['ps']\n"
   - ".engines += { type: \"native\" }"
   - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
-  - ".engines[.type == 'docker'].target_tag := 'v0.2'"
+  - ".engines[.type == 'docker'].target_tag := '0.2.0'"
   keywords:
   - "bioinformatics"
   - "modules"

target/executable/fastp/fastp

@@ -1,10 +1,10 @@
 #!/usr/bin/env bash
 
-# fastp v0.2
+# fastp 0.2.0
 # 
-# This wrapper script is auto-generated by viash 0.9.0-RC7 and is thus a
-# derivative work thereof. This software comes with ABSOLUTELY NO WARRANTY from
-# Data Intuitive.
+# This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative
+# work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
+# Intuitive.
 # 
 # The component may contain files which fall under a different license. The
 # authors of this component should specify the license in the header of such
@@ -174,7 +174,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "fastp v0.2"
+  echo "fastp 0.2.0"
   echo ""
   echo "An ultra-fast all-in-one FASTQ preprocessor"
   echo "(QC/adapters/trimming/filtering/splitting/merging...)."
@@ -1028,10 +1028,10 @@ RUN fastp --version 2>&1 | sed 's# #: "#;s#$#"#' > /var/software_versions.txt
 
 LABEL org.opencontainers.image.authors="Robrecht Cannoodt"
 LABEL org.opencontainers.image.description="Companion container for running component fastp"
-LABEL org.opencontainers.image.created="2024-09-12T12:36:23Z"
+LABEL org.opencontainers.image.created="2024-09-12T13:23:24Z"
 LABEL org.opencontainers.image.source="https://github.com/OpenGene/fastp"
-LABEL org.opencontainers.image.revision="f22ab0eab58dcd6bff89d8d73fe951953ff1260f"
-LABEL org.opencontainers.image.version="v0.2"
+LABEL org.opencontainers.image.revision="5526b3e939030daea80595fa98387b469329bbfa"
+LABEL org.opencontainers.image.version="0.2.0"
 
 VIASHDOCKER
   fi
@@ -1167,7 +1167,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "fastp v0.2"
+            echo "fastp 0.2.0"
             exit
             ;;
         --in1)
@@ -2183,7 +2183,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then
 
   # determine docker image id
   if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then
-    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/biobox/fastp:v0.2'
+    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/biobox/fastp:0.2.0'
   fi
 
   # print dockerfile

target/executable/fastqc/.config.vsh.yaml

@@ -1,5 +1,5 @@
 name: "fastqc"
-version: "v0.2"
+version: "0.2.0"
 authors:
 - name: "Theodoro Gasperin Terra Camargo"
   roles:
@@ -323,7 +323,7 @@ engines:
   id: "docker"
   image: "biocontainers/fastqc:v0.11.9_cv8"
   target_registry: "images.viash-hub.com"
-  target_tag: "v0.2"
+  target_tag: "0.2.0"
   namespace_separator: "/"
   setup:
   - type: "docker"
@@ -339,22 +339,22 @@ build_info:
   engine: "docker|native"
   output: "target/executable/fastqc"
   executable: "target/executable/fastqc/fastqc"
-  viash_version: "0.9.0-RC7"
-  git_commit: "f22ab0eab58dcd6bff89d8d73fe951953ff1260f"
+  viash_version: "0.9.0"
+  git_commit: "5526b3e939030daea80595fa98387b469329bbfa"
   git_remote: "https://github.com/viash-hub/biobox"
 package_config:
   name: "biobox"
-  version: "v0.2"
+  version: "0.2.0"
   description: "A collection of bioinformatics tools for working with sequence data.\n"
   info: null
-  viash_version: "0.9.0-RC7"
+  viash_version: "0.9.0"
   source: "src"
   target: "target"
   config_mods:
   - ".requirements.commands := ['ps']\n"
   - ".engines += { type: \"native\" }"
   - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
-  - ".engines[.type == 'docker'].target_tag := 'v0.2'"
+  - ".engines[.type == 'docker'].target_tag := '0.2.0'"
   keywords:
   - "bioinformatics"
   - "modules"

target/executable/fastqc/fastqc

@@ -1,10 +1,10 @@
 #!/usr/bin/env bash
 
-# fastqc v0.2
+# fastqc 0.2.0
 # 
-# This wrapper script is auto-generated by viash 0.9.0-RC7 and is thus a
-# derivative work thereof. This software comes with ABSOLUTELY NO WARRANTY from
-# Data Intuitive.
+# This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative
+# work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
+# Intuitive.
 # 
 # The component may contain files which fall under a different license. The
 # authors of this component should specify the license in the header of such
@@ -174,7 +174,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "fastqc v0.2"
+  echo "fastqc 0.2.0"
   echo ""
   echo "FastQC - A high throughput sequence QC analysis tool."
   echo ""
@@ -601,10 +601,10 @@ RUN echo "fastqc: $(fastqc --version | sed -n 's/^FastQC //p')" > /var/software_
 
 LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo"
 LABEL org.opencontainers.image.description="Companion container for running component fastqc"
-LABEL org.opencontainers.image.created="2024-09-12T12:36:16Z"
+LABEL org.opencontainers.image.created="2024-09-12T13:23:17Z"
 LABEL org.opencontainers.image.source="https://github.com/s-andrews/FastQC"
-LABEL org.opencontainers.image.revision="f22ab0eab58dcd6bff89d8d73fe951953ff1260f"
-LABEL org.opencontainers.image.version="v0.2"
+LABEL org.opencontainers.image.revision="5526b3e939030daea80595fa98387b469329bbfa"
+LABEL org.opencontainers.image.version="0.2.0"
 
 VIASHDOCKER
   fi
@@ -740,7 +740,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "fastqc v0.2"
+            echo "fastqc 0.2.0"
             exit
             ;;
         --input)
@@ -1018,7 +1018,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then
 
   # determine docker image id
   if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then
-    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/biobox/fastqc:v0.2'
+    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/biobox/fastqc:0.2.0'
   fi
 
   # print dockerfile

target/executable/featurecounts/.config.vsh.yaml

@@ -1,5 +1,5 @@
 name: "featurecounts"
-version: "v0.2"
+version: "0.2.0"
 authors:
 - name: "Sai Nirmayi Yasa"
   roles:
@@ -627,7 +627,7 @@ engines:
   id: "docker"
   image: "quay.io/biocontainers/subread:2.0.6--he4a0461_0"
   target_registry: "images.viash-hub.com"
-  target_tag: "v0.2"
+  target_tag: "0.2.0"
   namespace_separator: "/"
   setup:
   - type: "docker"
@@ -644,22 +644,22 @@ build_info:
   engine: "docker|native"
   output: "target/executable/featurecounts"
   executable: "target/executable/featurecounts/featurecounts"
-  viash_version: "0.9.0-RC7"
-  git_commit: "f22ab0eab58dcd6bff89d8d73fe951953ff1260f"
+  viash_version: "0.9.0"
+  git_commit: "5526b3e939030daea80595fa98387b469329bbfa"
   git_remote: "https://github.com/viash-hub/biobox"
 package_config:
   name: "biobox"
-  version: "v0.2"
+  version: "0.2.0"
   description: "A collection of bioinformatics tools for working with sequence data.\n"
   info: null
-  viash_version: "0.9.0-RC7"
+  viash_version: "0.9.0"
   source: "src"
   target: "target"
   config_mods:
   - ".requirements.commands := ['ps']\n"
   - ".engines += { type: \"native\" }"
   - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
-  - ".engines[.type == 'docker'].target_tag := 'v0.2'"
+  - ".engines[.type == 'docker'].target_tag := '0.2.0'"
   keywords:
   - "bioinformatics"
   - "modules"

target/executable/featurecounts/featurecounts

@@ -1,10 +1,10 @@
 #!/usr/bin/env bash
 
-# featurecounts v0.2
+# featurecounts 0.2.0
 # 
-# This wrapper script is auto-generated by viash 0.9.0-RC7 and is thus a
-# derivative work thereof. This software comes with ABSOLUTELY NO WARRANTY from
-# Data Intuitive.
+# This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative
+# work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
+# Intuitive.
 # 
 # The component may contain files which fall under a different license. The
 # authors of this component should specify the license in the header of such
@@ -174,7 +174,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "featurecounts v0.2"
+  echo "featurecounts 0.2.0"
   echo ""
   echo "featureCounts is a read summarization program for counting reads generated from"
   echo "either RNA or genomic DNA sequencing experiments by implementing highly"
@@ -754,10 +754,10 @@ RUN featureCounts -v 2>&1 | sed 's/featureCounts v\([0-9.]*\)/featureCounts: \1/
 
 LABEL org.opencontainers.image.authors="Sai Nirmayi Yasa"
 LABEL org.opencontainers.image.description="Companion container for running component featurecounts"
-LABEL org.opencontainers.image.created="2024-09-12T12:36:18Z"
+LABEL org.opencontainers.image.created="2024-09-12T13:23:19Z"
 LABEL org.opencontainers.image.source="https://github.com/ShiLab-Bioinformatics/subread"
-LABEL org.opencontainers.image.revision="f22ab0eab58dcd6bff89d8d73fe951953ff1260f"
-LABEL org.opencontainers.image.version="v0.2"
+LABEL org.opencontainers.image.revision="5526b3e939030daea80595fa98387b469329bbfa"
+LABEL org.opencontainers.image.version="0.2.0"
 
 VIASHDOCKER
   fi
@@ -893,7 +893,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "featurecounts v0.2"
+            echo "featurecounts 0.2.0"
             exit
             ;;
         --annotation)
@@ -1497,7 +1497,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then
 
   # determine docker image id
   if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then
-    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/biobox/featurecounts:v0.2'
+    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/biobox/featurecounts:0.2.0'
   fi
 
   # print dockerfile

target/executable/gffread/.config.vsh.yaml

@@ -1,5 +1,5 @@
 name: "gffread"
-version: "v0.2"
+version: "0.2.0"
 authors:
 - name: "Emma Rousseau"
   roles:
@@ -668,7 +668,7 @@ engines:
   id: "docker"
   image: "quay.io/biocontainers/gffread:0.12.7--hdcf5f25_3"
   target_registry: "images.viash-hub.com"
-  target_tag: "v0.2"
+  target_tag: "0.2.0"
   namespace_separator: "/"
   setup:
   - type: "docker"
@@ -684,22 +684,22 @@ build_info:
   engine: "docker|native"
   output: "target/executable/gffread"
   executable: "target/executable/gffread/gffread"
-  viash_version: "0.9.0-RC7"
-  git_commit: "f22ab0eab58dcd6bff89d8d73fe951953ff1260f"
+  viash_version: "0.9.0"
+  git_commit: "5526b3e939030daea80595fa98387b469329bbfa"
   git_remote: "https://github.com/viash-hub/biobox"
 package_config:
   name: "biobox"
-  version: "v0.2"
+  version: "0.2.0"
   description: "A collection of bioinformatics tools for working with sequence data.\n"
   info: null
-  viash_version: "0.9.0-RC7"
+  viash_version: "0.9.0"
   source: "src"
   target: "target"
   config_mods:
   - ".requirements.commands := ['ps']\n"
   - ".engines += { type: \"native\" }"
   - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
-  - ".engines[.type == 'docker'].target_tag := 'v0.2'"
+  - ".engines[.type == 'docker'].target_tag := '0.2.0'"
   keywords:
   - "bioinformatics"
   - "modules"

target/executable/gffread/gffread

@@ -1,10 +1,10 @@
 #!/usr/bin/env bash
 
-# gffread v0.2
+# gffread 0.2.0
 # 
-# This wrapper script is auto-generated by viash 0.9.0-RC7 and is thus a
-# derivative work thereof. This software comes with ABSOLUTELY NO WARRANTY from
-# Data Intuitive.
+# This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative
+# work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
+# Intuitive.
 # 
 # The component may contain files which fall under a different license. The
 # authors of this component should specify the license in the header of such
@@ -174,7 +174,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "gffread v0.2"
+  echo "gffread 0.2.0"
   echo ""
   echo "Validate, filter, convert and perform various other operations on GFF files."
   echo ""
@@ -807,10 +807,10 @@ RUN echo "gffread: \"$(gffread --version 2>&1)\"" > /var/software_versions.txt
 
 LABEL org.opencontainers.image.authors="Emma Rousseau"
 LABEL org.opencontainers.image.description="Companion container for running component gffread"
-LABEL org.opencontainers.image.created="2024-09-12T12:36:09Z"
+LABEL org.opencontainers.image.created="2024-09-12T13:23:10Z"
 LABEL org.opencontainers.image.source="https://github.com/gpertea/gffread"
-LABEL org.opencontainers.image.revision="f22ab0eab58dcd6bff89d8d73fe951953ff1260f"
-LABEL org.opencontainers.image.version="v0.2"
+LABEL org.opencontainers.image.revision="5526b3e939030daea80595fa98387b469329bbfa"
+LABEL org.opencontainers.image.version="0.2.0"
 
 VIASHDOCKER
   fi
@@ -946,7 +946,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "gffread v0.2"
+            echo "gffread 0.2.0"
             exit
             ;;
         --input)
@@ -1685,7 +1685,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then
 
   # determine docker image id
   if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then
-    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/biobox/gffread:v0.2'
+    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/biobox/gffread:0.2.0'
   fi
 
   # print dockerfile

target/executable/lofreq/lofreq_call/.config.vsh.yaml

@@ -1,6 +1,6 @@
 name: "lofreq_call"
 namespace: "lofreq"
-version: "v0.2"
+version: "0.2.0"
 authors:
 - name: "Kai Waldrant"
   roles:
@@ -489,7 +489,7 @@ engines:
   id: "docker"
   image: "quay.io/biocontainers/lofreq:2.1.5--py38h794fc9e_10"
   target_registry: "images.viash-hub.com"
-  target_tag: "v0.2"
+  target_tag: "0.2.0"
   namespace_separator: "/"
   setup:
   - type: "docker"
@@ -506,22 +506,22 @@ build_info:
   engine: "docker|native"
   output: "target/executable/lofreq/lofreq_call"
   executable: "target/executable/lofreq/lofreq_call/lofreq_call"
-  viash_version: "0.9.0-RC7"
-  git_commit: "f22ab0eab58dcd6bff89d8d73fe951953ff1260f"
+  viash_version: "0.9.0"
+  git_commit: "5526b3e939030daea80595fa98387b469329bbfa"
   git_remote: "https://github.com/viash-hub/biobox"
 package_config:
   name: "biobox"
-  version: "v0.2"
+  version: "0.2.0"
   description: "A collection of bioinformatics tools for working with sequence data.\n"
   info: null
-  viash_version: "0.9.0-RC7"
+  viash_version: "0.9.0"
   source: "src"
   target: "target"
   config_mods:
   - ".requirements.commands := ['ps']\n"
   - ".engines += { type: \"native\" }"
   - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
-  - ".engines[.type == 'docker'].target_tag := 'v0.2'"
+  - ".engines[.type == 'docker'].target_tag := '0.2.0'"
   keywords:
   - "bioinformatics"
   - "modules"

target/executable/lofreq/lofreq_call/lofreq_call

@@ -1,10 +1,10 @@
 #!/usr/bin/env bash
 
-# lofreq_call v0.2
+# lofreq_call 0.2.0
 # 
-# This wrapper script is auto-generated by viash 0.9.0-RC7 and is thus a
-# derivative work thereof. This software comes with ABSOLUTELY NO WARRANTY from
-# Data Intuitive.
+# This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative
+# work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
+# Intuitive.
 # 
 # The component may contain files which fall under a different license. The
 # authors of this component should specify the license in the header of such
@@ -174,7 +174,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "lofreq_call v0.2"
+  echo "lofreq_call 0.2.0"
   echo ""
   echo "Call variants from a BAM file."
   echo ""
@@ -656,10 +656,10 @@ echo "lofreq: $version" > /var/software_versions.txt
 
 LABEL org.opencontainers.image.authors="Kai Waldrant"
 LABEL org.opencontainers.image.description="Companion container for running component lofreq lofreq_call"
-LABEL org.opencontainers.image.created="2024-09-12T12:36:18Z"
+LABEL org.opencontainers.image.created="2024-09-12T13:23:19Z"
 LABEL org.opencontainers.image.source="https://github.com/viash-hub/biobox"
-LABEL org.opencontainers.image.revision="f22ab0eab58dcd6bff89d8d73fe951953ff1260f"
-LABEL org.opencontainers.image.version="v0.2"
+LABEL org.opencontainers.image.revision="5526b3e939030daea80595fa98387b469329bbfa"
+LABEL org.opencontainers.image.version="0.2.0"
 
 VIASHDOCKER
   fi
@@ -795,7 +795,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "lofreq_call v0.2"
+            echo "lofreq_call 0.2.0"
             exit
             ;;
         --input)
@@ -1319,7 +1319,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then
 
   # determine docker image id
   if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then
-    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/biobox/lofreq/lofreq_call:v0.2'
+    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/biobox/lofreq/lofreq_call:0.2.0'
   fi
 
   # print dockerfile

target/executable/lofreq/lofreq_indelqual/.config.vsh.yaml

@@ -1,6 +1,6 @@
 name: "lofreq_indelqual"
 namespace: "lofreq"
-version: "v0.2"
+version: "0.2.0"
 authors:
 - name: "Kai Waldrant"
   roles:
@@ -197,7 +197,7 @@ engines:
   id: "docker"
   image: "quay.io/biocontainers/lofreq:2.1.5--py38h794fc9e_10"
   target_registry: "images.viash-hub.com"
-  target_tag: "v0.2"
+  target_tag: "0.2.0"
   namespace_separator: "/"
   setup:
   - type: "docker"
@@ -214,22 +214,22 @@ build_info:
   engine: "docker|native"
   output: "target/executable/lofreq/lofreq_indelqual"
   executable: "target/executable/lofreq/lofreq_indelqual/lofreq_indelqual"
-  viash_version: "0.9.0-RC7"
-  git_commit: "f22ab0eab58dcd6bff89d8d73fe951953ff1260f"
+  viash_version: "0.9.0"
+  git_commit: "5526b3e939030daea80595fa98387b469329bbfa"
   git_remote: "https://github.com/viash-hub/biobox"
 package_config:
   name: "biobox"
-  version: "v0.2"
+  version: "0.2.0"
   description: "A collection of bioinformatics tools for working with sequence data.\n"
   info: null
-  viash_version: "0.9.0-RC7"
+  viash_version: "0.9.0"
   source: "src"
   target: "target"
   config_mods:
   - ".requirements.commands := ['ps']\n"
   - ".engines += { type: \"native\" }"
   - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
-  - ".engines[.type == 'docker'].target_tag := 'v0.2'"
+  - ".engines[.type == 'docker'].target_tag := '0.2.0'"
   keywords:
   - "bioinformatics"
   - "modules"

target/executable/lofreq/lofreq_indelqual/lofreq_indelqual

@@ -1,10 +1,10 @@
 #!/usr/bin/env bash
 
-# lofreq_indelqual v0.2
+# lofreq_indelqual 0.2.0
 # 
-# This wrapper script is auto-generated by viash 0.9.0-RC7 and is thus a
-# derivative work thereof. This software comes with ABSOLUTELY NO WARRANTY from
-# Data Intuitive.
+# This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative
+# work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
+# Intuitive.
 # 
 # The component may contain files which fall under a different license. The
 # authors of this component should specify the license in the header of such
@@ -174,7 +174,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "lofreq_indelqual v0.2"
+  echo "lofreq_indelqual 0.2.0"
   echo ""
   echo "Insert indel qualities into BAM file (required for indel predictions)."
   echo ""
@@ -501,10 +501,10 @@ echo "lofreq: $version" > /var/software_versions.txt
 
 LABEL org.opencontainers.image.authors="Kai Waldrant"
 LABEL org.opencontainers.image.description="Companion container for running component lofreq lofreq_indelqual"
-LABEL org.opencontainers.image.created="2024-09-12T12:36:18Z"
+LABEL org.opencontainers.image.created="2024-09-12T13:23:19Z"
 LABEL org.opencontainers.image.source="https://github.com/viash-hub/biobox"
-LABEL org.opencontainers.image.revision="f22ab0eab58dcd6bff89d8d73fe951953ff1260f"
-LABEL org.opencontainers.image.version="v0.2"
+LABEL org.opencontainers.image.revision="5526b3e939030daea80595fa98387b469329bbfa"
+LABEL org.opencontainers.image.version="0.2.0"
 
 VIASHDOCKER
   fi
@@ -640,7 +640,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "lofreq_indelqual v0.2"
+            echo "lofreq_indelqual 0.2.0"
             exit
             ;;
         --input)
@@ -803,7 +803,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then
 
   # determine docker image id
   if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then
-    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/biobox/lofreq/lofreq_indelqual:v0.2'
+    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/biobox/lofreq/lofreq_indelqual:0.2.0'
   fi
 
   # print dockerfile

target/executable/multiqc/.config.vsh.yaml

@@ -1,5 +1,5 @@
 name: "multiqc"
-version: "v0.2"
+version: "0.2.0"
 authors:
 - name: "Dorien Roosen"
   roles:
@@ -433,7 +433,7 @@ engines:
   id: "docker"
   image: "quay.io/biocontainers/multiqc:1.21--pyhdfd78af_0"
   target_registry: "images.viash-hub.com"
-  target_tag: "v0.2"
+  target_tag: "0.2.0"
   namespace_separator: "/"
   setup:
   - type: "docker"
@@ -455,22 +455,22 @@ build_info:
   engine: "docker|native"
   output: "target/executable/multiqc"
   executable: "target/executable/multiqc/multiqc"
-  viash_version: "0.9.0-RC7"
-  git_commit: "f22ab0eab58dcd6bff89d8d73fe951953ff1260f"
+  viash_version: "0.9.0"
+  git_commit: "5526b3e939030daea80595fa98387b469329bbfa"
   git_remote: "https://github.com/viash-hub/biobox"
 package_config:
   name: "biobox"
-  version: "v0.2"
+  version: "0.2.0"
   description: "A collection of bioinformatics tools for working with sequence data.\n"
   info: null
-  viash_version: "0.9.0-RC7"
+  viash_version: "0.9.0"
   source: "src"
   target: "target"
   config_mods:
   - ".requirements.commands := ['ps']\n"
   - ".engines += { type: \"native\" }"
   - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
-  - ".engines[.type == 'docker'].target_tag := 'v0.2'"
+  - ".engines[.type == 'docker'].target_tag := '0.2.0'"
   keywords:
   - "bioinformatics"
   - "modules"

target/executable/multiqc/multiqc

@@ -1,10 +1,10 @@
 #!/usr/bin/env bash
 
-# multiqc v0.2
+# multiqc 0.2.0
 # 
-# This wrapper script is auto-generated by viash 0.9.0-RC7 and is thus a
-# derivative work thereof. This software comes with ABSOLUTELY NO WARRANTY from
-# Data Intuitive.
+# This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative
+# work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
+# Intuitive.
 # 
 # The component may contain files which fall under a different license. The
 # authors of this component should specify the license in the header of such
@@ -174,7 +174,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "multiqc v0.2"
+  echo "multiqc 0.2.0"
   echo ""
   echo "MultiQC aggregates results from bioinformatics analyses across many samples into"
   echo "a single report."
@@ -637,10 +637,10 @@ RUN multiqc --version | sed 's/multiqc, version\s\(.*\)/multiqc: "\1"/' > /var/s
 
 LABEL org.opencontainers.image.authors="Dorien Roosen"
 LABEL org.opencontainers.image.description="Companion container for running component multiqc"
-LABEL org.opencontainers.image.created="2024-09-12T12:36:26Z"
+LABEL org.opencontainers.image.created="2024-09-12T13:23:26Z"
 LABEL org.opencontainers.image.source="https://github.com/viash-hub/biobox"
-LABEL org.opencontainers.image.revision="f22ab0eab58dcd6bff89d8d73fe951953ff1260f"
-LABEL org.opencontainers.image.version="v0.2"
+LABEL org.opencontainers.image.revision="5526b3e939030daea80595fa98387b469329bbfa"
+LABEL org.opencontainers.image.version="0.2.0"
 
 VIASHDOCKER
   fi
@@ -776,7 +776,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "multiqc v0.2"
+            echo "multiqc 0.2.0"
             exit
             ;;
         --input)
@@ -1185,7 +1185,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then
 
   # determine docker image id
   if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then
-    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/biobox/multiqc:v0.2'
+    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/biobox/multiqc:0.2.0'
   fi
 
   # print dockerfile

target/executable/pear/.config.vsh.yaml

@@ -1,5 +1,5 @@
 name: "pear"
-version: "v0.2"
+version: "0.2.0"
 authors:
 - name: "Kai Waldrant"
   roles:
@@ -380,7 +380,7 @@ engines:
   id: "docker"
   image: "quay.io/biocontainers/pear:0.9.6--h9d449c0_10"
   target_registry: "images.viash-hub.com"
-  target_tag: "v0.2"
+  target_tag: "0.2.0"
   namespace_separator: "/"
   setup:
   - type: "docker"
@@ -397,22 +397,22 @@ build_info:
   engine: "docker|native"
   output: "target/executable/pear"
   executable: "target/executable/pear/pear"
-  viash_version: "0.9.0-RC7"
-  git_commit: "f22ab0eab58dcd6bff89d8d73fe951953ff1260f"
+  viash_version: "0.9.0"
+  git_commit: "5526b3e939030daea80595fa98387b469329bbfa"
   git_remote: "https://github.com/viash-hub/biobox"
 package_config:
   name: "biobox"
-  version: "v0.2"
+  version: "0.2.0"
   description: "A collection of bioinformatics tools for working with sequence data.\n"
   info: null
-  viash_version: "0.9.0-RC7"
+  viash_version: "0.9.0"
   source: "src"
   target: "target"
   config_mods:
   - ".requirements.commands := ['ps']\n"
   - ".engines += { type: \"native\" }"
   - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
-  - ".engines[.type == 'docker'].target_tag := 'v0.2'"
+  - ".engines[.type == 'docker'].target_tag := '0.2.0'"
   keywords:
   - "bioinformatics"
   - "modules"

target/executable/pear/pear

@@ -1,10 +1,10 @@
 #!/usr/bin/env bash
 
-# pear v0.2
+# pear 0.2.0
 # 
-# This wrapper script is auto-generated by viash 0.9.0-RC7 and is thus a
-# derivative work thereof. This software comes with ABSOLUTELY NO WARRANTY from
-# Data Intuitive.
+# This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative
+# work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
+# Intuitive.
 # 
 # The component may contain files which fall under a different license. The
 # authors of this component should specify the license in the header of such
@@ -174,7 +174,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "pear v0.2"
+  echo "pear 0.2.0"
   echo ""
   echo "PEAR is an ultrafast, memory-efficient and highly accurate pair-end read merger."
   echo "It is fully parallelized and can run with as low as just a few kilobytes of"
@@ -597,10 +597,10 @@ echo "pear: $version" > /var/software_versions.txt
 
 LABEL org.opencontainers.image.authors="Kai Waldrant"
 LABEL org.opencontainers.image.description="Companion container for running component pear"
-LABEL org.opencontainers.image.created="2024-09-12T12:36:12Z"
+LABEL org.opencontainers.image.created="2024-09-12T13:23:13Z"
 LABEL org.opencontainers.image.source="https://github.com/tseemann/PEAR"
-LABEL org.opencontainers.image.revision="f22ab0eab58dcd6bff89d8d73fe951953ff1260f"
-LABEL org.opencontainers.image.version="v0.2"
+LABEL org.opencontainers.image.revision="5526b3e939030daea80595fa98387b469329bbfa"
+LABEL org.opencontainers.image.version="0.2.0"
 
 VIASHDOCKER
   fi
@@ -736,7 +736,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "pear v0.2"
+            echo "pear 0.2.0"
             exit
             ;;
         --forward_fastq)
@@ -1112,7 +1112,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then
 
   # determine docker image id
   if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then
-    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/biobox/pear:v0.2'
+    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/biobox/pear:0.2.0'
   fi
 
   # print dockerfile

target/executable/qualimap/qualimap_rnaseq/.config.vsh.yaml

@@ -1,6 +1,6 @@
 name: "qualimap_rnaseq"
 namespace: "qualimap"
-version: "v0.2"
+version: "0.2.0"
 authors:
 - name: "Dorien Roosen"
   roles:
@@ -247,7 +247,7 @@ engines:
   id: "docker"
   image: "quay.io/biocontainers/qualimap:2.3--hdfd78af_0"
   target_registry: "images.viash-hub.com"
-  target_tag: "v0.2"
+  target_tag: "0.2.0"
   namespace_separator: "/"
   setup:
   - type: "docker"
@@ -263,22 +263,22 @@ build_info:
   engine: "docker|native"
   output: "target/executable/qualimap/qualimap_rnaseq"
   executable: "target/executable/qualimap/qualimap_rnaseq/qualimap_rnaseq"
-  viash_version: "0.9.0-RC7"
-  git_commit: "f22ab0eab58dcd6bff89d8d73fe951953ff1260f"
+  viash_version: "0.9.0"
+  git_commit: "5526b3e939030daea80595fa98387b469329bbfa"
   git_remote: "https://github.com/viash-hub/biobox"
 package_config:
   name: "biobox"
-  version: "v0.2"
+  version: "0.2.0"
   description: "A collection of bioinformatics tools for working with sequence data.\n"
   info: null
-  viash_version: "0.9.0-RC7"
+  viash_version: "0.9.0"
   source: "src"
   target: "target"
   config_mods:
   - ".requirements.commands := ['ps']\n"
   - ".engines += { type: \"native\" }"
   - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
-  - ".engines[.type == 'docker'].target_tag := 'v0.2'"
+  - ".engines[.type == 'docker'].target_tag := '0.2.0'"
   keywords:
   - "bioinformatics"
   - "modules"

target/executable/qualimap/qualimap_rnaseq/qualimap_rnaseq

@@ -1,10 +1,10 @@
 #!/usr/bin/env bash
 
-# qualimap_rnaseq v0.2
+# qualimap_rnaseq 0.2.0
 # 
-# This wrapper script is auto-generated by viash 0.9.0-RC7 and is thus a
-# derivative work thereof. This software comes with ABSOLUTELY NO WARRANTY from
-# Data Intuitive.
+# This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative
+# work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
+# Intuitive.
 # 
 # The component may contain files which fall under a different license. The
 # authors of this component should specify the license in the header of such
@@ -174,7 +174,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "qualimap_rnaseq v0.2"
+  echo "qualimap_rnaseq 0.2.0"
   echo ""
   echo "Qualimap RNA-seq QC reports quality control metrics and bias estimations"
   echo "which are specific for whole transcriptome sequencing, including reads genomic"
@@ -527,10 +527,10 @@ RUN echo QualiMap: $(qualimap 2>&1 | grep QualiMap | sed 's/^.*QualiMap//') > /v
 
 LABEL org.opencontainers.image.authors="Dorien Roosen"
 LABEL org.opencontainers.image.description="Companion container for running component qualimap qualimap_rnaseq"
-LABEL org.opencontainers.image.created="2024-09-12T12:36:16Z"
+LABEL org.opencontainers.image.created="2024-09-12T13:23:17Z"
 LABEL org.opencontainers.image.source="https://bitbucket.org/kokonech/qualimap/commits/branch/master"
-LABEL org.opencontainers.image.revision="f22ab0eab58dcd6bff89d8d73fe951953ff1260f"
-LABEL org.opencontainers.image.version="v0.2"
+LABEL org.opencontainers.image.revision="5526b3e939030daea80595fa98387b469329bbfa"
+LABEL org.opencontainers.image.version="0.2.0"
 
 VIASHDOCKER
   fi
@@ -666,7 +666,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "qualimap_rnaseq v0.2"
+            echo "qualimap_rnaseq 0.2.0"
             exit
             ;;
         --bam)
@@ -877,7 +877,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then
 
   # determine docker image id
   if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then
-    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/biobox/qualimap/qualimap_rnaseq:v0.2'
+    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/biobox/qualimap/qualimap_rnaseq:0.2.0'
   fi
 
   # print dockerfile

target/executable/rsem/rsem_prepare_reference/.config.vsh.yaml

@@ -1,6 +1,6 @@
 name: "rsem_prepare_reference"
 namespace: "rsem"
-version: "v0.2"
+version: "0.2.0"
 authors:
 - name: "Sai Nirmayi Yasa"
   roles:
@@ -352,7 +352,7 @@ engines:
   id: "docker"
   image: "ubuntu:22.04"
   target_registry: "images.viash-hub.com"
-  target_tag: "v0.2"
+  target_tag: "0.2.0"
   namespace_separator: "/"
   setup:
   - type: "apt"
@@ -415,22 +415,22 @@ build_info:
   engine: "docker|native"
   output: "target/executable/rsem/rsem_prepare_reference"
   executable: "target/executable/rsem/rsem_prepare_reference/rsem_prepare_reference"
-  viash_version: "0.9.0-RC7"
-  git_commit: "f22ab0eab58dcd6bff89d8d73fe951953ff1260f"
+  viash_version: "0.9.0"
+  git_commit: "5526b3e939030daea80595fa98387b469329bbfa"
   git_remote: "https://github.com/viash-hub/biobox"
 package_config:
   name: "biobox"
-  version: "v0.2"
+  version: "0.2.0"
   description: "A collection of bioinformatics tools for working with sequence data.\n"
   info: null
-  viash_version: "0.9.0-RC7"
+  viash_version: "0.9.0"
   source: "src"
   target: "target"
   config_mods:
   - ".requirements.commands := ['ps']\n"
   - ".engines += { type: \"native\" }"
   - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
-  - ".engines[.type == 'docker'].target_tag := 'v0.2'"
+  - ".engines[.type == 'docker'].target_tag := '0.2.0'"
   keywords:
   - "bioinformatics"
   - "modules"

target/executable/rsem/rsem_prepare_reference/rsem_prepare_reference

@@ -1,10 +1,10 @@
 #!/usr/bin/env bash
 
-# rsem_prepare_reference v0.2
+# rsem_prepare_reference 0.2.0
 # 
-# This wrapper script is auto-generated by viash 0.9.0-RC7 and is thus a
-# derivative work thereof. This software comes with ABSOLUTELY NO WARRANTY from
-# Data Intuitive.
+# This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative
+# work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
+# Intuitive.
 # 
 # The component may contain files which fall under a different license. The
 # authors of this component should specify the license in the header of such
@@ -174,7 +174,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "rsem_prepare_reference v0.2"
+  echo "rsem_prepare_reference 0.2.0"
   echo ""
   echo "RSEM is a software package for estimating gene and isoform expression levels"
   echo "from RNA-Seq data. This component prepares transcript references for RSEM."
@@ -656,10 +656,10 @@ echo "HISAT2: `hisat2 --version | grep -oP 'hisat2-align-s version \K\d+\.\d+\.\
 
 LABEL org.opencontainers.image.authors="Sai Nirmayi Yasa"
 LABEL org.opencontainers.image.description="Companion container for running component rsem rsem_prepare_reference"
-LABEL org.opencontainers.image.created="2024-09-12T12:36:21Z"
+LABEL org.opencontainers.image.created="2024-09-12T13:23:22Z"
 LABEL org.opencontainers.image.source="https://github.com/deweylab/RSEM"
-LABEL org.opencontainers.image.revision="f22ab0eab58dcd6bff89d8d73fe951953ff1260f"
-LABEL org.opencontainers.image.version="v0.2"
+LABEL org.opencontainers.image.revision="5526b3e939030daea80595fa98387b469329bbfa"
+LABEL org.opencontainers.image.version="0.2.0"
 
 VIASHDOCKER
   fi
@@ -795,7 +795,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "rsem_prepare_reference v0.2"
+            echo "rsem_prepare_reference 0.2.0"
             exit
             ;;
         --reference_fasta_files)
@@ -1092,7 +1092,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then
 
   # determine docker image id
   if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then
-    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/biobox/rsem/rsem_prepare_reference:v0.2'
+    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/biobox/rsem/rsem_prepare_reference:0.2.0'
   fi
 
   # print dockerfile

target/executable/salmon/salmon_index/.config.vsh.yaml

@@ -1,6 +1,6 @@
 name: "salmon_index"
 namespace: "salmon"
-version: "v0.2"
+version: "0.2.0"
 authors:
 - name: "Sai Nirmayi Yasa"
   roles:
@@ -260,7 +260,7 @@ engines:
   id: "docker"
   image: "quay.io/biocontainers/salmon:1.10.2--hecfa306_0"
   target_registry: "images.viash-hub.com"
-  target_tag: "v0.2"
+  target_tag: "0.2.0"
   namespace_separator: "/"
   setup:
   - type: "docker"
@@ -276,22 +276,22 @@ build_info:
   engine: "docker|native"
   output: "target/executable/salmon/salmon_index"
   executable: "target/executable/salmon/salmon_index/salmon_index"
-  viash_version: "0.9.0-RC7"
-  git_commit: "f22ab0eab58dcd6bff89d8d73fe951953ff1260f"
+  viash_version: "0.9.0"
+  git_commit: "5526b3e939030daea80595fa98387b469329bbfa"
   git_remote: "https://github.com/viash-hub/biobox"
 package_config:
   name: "biobox"
-  version: "v0.2"
+  version: "0.2.0"
   description: "A collection of bioinformatics tools for working with sequence data.\n"
   info: null
-  viash_version: "0.9.0-RC7"
+  viash_version: "0.9.0"
   source: "src"
   target: "target"
   config_mods:
   - ".requirements.commands := ['ps']\n"
   - ".engines += { type: \"native\" }"
   - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
-  - ".engines[.type == 'docker'].target_tag := 'v0.2'"
+  - ".engines[.type == 'docker'].target_tag := '0.2.0'"
   keywords:
   - "bioinformatics"
   - "modules"

target/executable/salmon/salmon_index/salmon_index

@@ -1,10 +1,10 @@
 #!/usr/bin/env bash
 
-# salmon_index v0.2
+# salmon_index 0.2.0
 # 
-# This wrapper script is auto-generated by viash 0.9.0-RC7 and is thus a
-# derivative work thereof. This software comes with ABSOLUTELY NO WARRANTY from
-# Data Intuitive.
+# This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative
+# work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
+# Intuitive.
 # 
 # The component may contain files which fall under a different license. The
 # authors of this component should specify the license in the header of such
@@ -174,7 +174,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "salmon_index v0.2"
+  echo "salmon_index 0.2.0"
   echo ""
   echo "Salmon is a tool for wicked-fast transcript quantification from RNA-seq data. It"
   echo "can either make use of pre-computed alignments (in the form of a SAM/BAM file)"
@@ -546,10 +546,10 @@ RUN salmon index -v 2>&1 | sed 's/salmon \([0-9.]*\)/salmon: \1/' > /var/softwar
 
 LABEL org.opencontainers.image.authors="Sai Nirmayi Yasa"
 LABEL org.opencontainers.image.description="Companion container for running component salmon salmon_index"
-LABEL org.opencontainers.image.created="2024-09-12T12:36:24Z"
+LABEL org.opencontainers.image.created="2024-09-12T13:23:25Z"
 LABEL org.opencontainers.image.source="https://github.com/COMBINE-lab/salmon"
-LABEL org.opencontainers.image.revision="f22ab0eab58dcd6bff89d8d73fe951953ff1260f"
-LABEL org.opencontainers.image.version="v0.2"
+LABEL org.opencontainers.image.revision="5526b3e939030daea80595fa98387b469329bbfa"
+LABEL org.opencontainers.image.version="0.2.0"
 
 VIASHDOCKER
   fi
@@ -685,7 +685,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "salmon_index v0.2"
+            echo "salmon_index 0.2.0"
             exit
             ;;
         --genome)
@@ -919,7 +919,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then
 
   # determine docker image id
   if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then
-    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/biobox/salmon/salmon_index:v0.2'
+    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/biobox/salmon/salmon_index:0.2.0'
   fi
 
   # print dockerfile

target/executable/salmon/salmon_quant/.config.vsh.yaml

@@ -1,6 +1,6 @@
 name: "salmon_quant"
 namespace: "salmon"
-version: "v0.2"
+version: "0.2.0"
 authors:
 - name: "Sai Nirmayi Yasa"
   roles:
@@ -1156,7 +1156,7 @@ engines:
   id: "docker"
   image: "quay.io/biocontainers/salmon:1.10.2--hecfa306_0"
   target_registry: "images.viash-hub.com"
-  target_tag: "v0.2"
+  target_tag: "0.2.0"
   namespace_separator: "/"
   setup:
   - type: "docker"
@@ -1172,22 +1172,22 @@ build_info:
   engine: "docker|native"
   output: "target/executable/salmon/salmon_quant"
   executable: "target/executable/salmon/salmon_quant/salmon_quant"
-  viash_version: "0.9.0-RC7"
-  git_commit: "f22ab0eab58dcd6bff89d8d73fe951953ff1260f"
+  viash_version: "0.9.0"
+  git_commit: "5526b3e939030daea80595fa98387b469329bbfa"
   git_remote: "https://github.com/viash-hub/biobox"
 package_config:
   name: "biobox"
-  version: "v0.2"
+  version: "0.2.0"
   description: "A collection of bioinformatics tools for working with sequence data.\n"
   info: null
-  viash_version: "0.9.0-RC7"
+  viash_version: "0.9.0"
   source: "src"
   target: "target"
   config_mods:
   - ".requirements.commands := ['ps']\n"
   - ".engines += { type: \"native\" }"
   - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
-  - ".engines[.type == 'docker'].target_tag := 'v0.2'"
+  - ".engines[.type == 'docker'].target_tag := '0.2.0'"
   keywords:
   - "bioinformatics"
   - "modules"

target/executable/salmon/salmon_quant/salmon_quant

@@ -1,10 +1,10 @@
 #!/usr/bin/env bash
 
-# salmon_quant v0.2
+# salmon_quant 0.2.0
 # 
-# This wrapper script is auto-generated by viash 0.9.0-RC7 and is thus a
-# derivative work thereof. This software comes with ABSOLUTELY NO WARRANTY from
-# Data Intuitive.
+# This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative
+# work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
+# Intuitive.
 # 
 # The component may contain files which fall under a different license. The
 # authors of this component should specify the license in the header of such
@@ -174,7 +174,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "salmon_quant v0.2"
+  echo "salmon_quant 0.2.0"
   echo ""
   echo "Salmon is a tool for wicked-fast transcript quantification from RNA-seq data. It"
   echo "can either make use of pre-computed alignments (in the form of a SAM/BAM file)"
@@ -1168,10 +1168,10 @@ RUN salmon index -v 2>&1 | sed 's/salmon \([0-9.]*\)/salmon: \1/' > /var/softwar
 
 LABEL org.opencontainers.image.authors="Sai Nirmayi Yasa"
 LABEL org.opencontainers.image.description="Companion container for running component salmon salmon_quant"
-LABEL org.opencontainers.image.created="2024-09-12T12:36:25Z"
+LABEL org.opencontainers.image.created="2024-09-12T13:23:25Z"
 LABEL org.opencontainers.image.source="https://github.com/COMBINE-lab/salmon"
-LABEL org.opencontainers.image.revision="f22ab0eab58dcd6bff89d8d73fe951953ff1260f"
-LABEL org.opencontainers.image.version="v0.2"
+LABEL org.opencontainers.image.revision="5526b3e939030daea80595fa98387b469329bbfa"
+LABEL org.opencontainers.image.version="0.2.0"
 
 VIASHDOCKER
   fi
@@ -1307,7 +1307,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "salmon_quant v0.2"
+            echo "salmon_quant 0.2.0"
             exit
             ;;
         --lib_type)
@@ -2274,7 +2274,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then
 
   # determine docker image id
   if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then
-    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/biobox/salmon/salmon_quant:v0.2'
+    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/biobox/salmon/salmon_quant:0.2.0'
   fi
 
   # print dockerfile

target/executable/samtools/samtools_collate/.config.vsh.yaml

@@ -1,6 +1,6 @@
 name: "samtools_collate"
 namespace: "samtools"
-version: "v0.2"
+version: "0.2.0"
 authors:
 - name: "Emma Rousseau"
   roles:
@@ -246,7 +246,7 @@ engines:
   id: "docker"
   image: "quay.io/biocontainers/samtools:1.19.2--h50ea8bc_1"
   target_registry: "images.viash-hub.com"
-  target_tag: "v0.2"
+  target_tag: "0.2.0"
   namespace_separator: "/"
   setup:
   - type: "docker"
@@ -263,22 +263,22 @@ build_info:
   engine: "docker|native"
   output: "target/executable/samtools/samtools_collate"
   executable: "target/executable/samtools/samtools_collate/samtools_collate"
-  viash_version: "0.9.0-RC7"
-  git_commit: "f22ab0eab58dcd6bff89d8d73fe951953ff1260f"
+  viash_version: "0.9.0"
+  git_commit: "5526b3e939030daea80595fa98387b469329bbfa"
   git_remote: "https://github.com/viash-hub/biobox"
 package_config:
   name: "biobox"
-  version: "v0.2"
+  version: "0.2.0"
   description: "A collection of bioinformatics tools for working with sequence data.\n"
   info: null
-  viash_version: "0.9.0-RC7"
+  viash_version: "0.9.0"
   source: "src"
   target: "target"
   config_mods:
   - ".requirements.commands := ['ps']\n"
   - ".engines += { type: \"native\" }"
   - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
-  - ".engines[.type == 'docker'].target_tag := 'v0.2'"
+  - ".engines[.type == 'docker'].target_tag := '0.2.0'"
   keywords:
   - "bioinformatics"
   - "modules"

target/executable/samtools/samtools_collate/samtools_collate

@@ -1,10 +1,10 @@
 #!/usr/bin/env bash
 
-# samtools_collate v0.2
+# samtools_collate 0.2.0
 # 
-# This wrapper script is auto-generated by viash 0.9.0-RC7 and is thus a
-# derivative work thereof. This software comes with ABSOLUTELY NO WARRANTY from
-# Data Intuitive.
+# This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative
+# work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
+# Intuitive.
 # 
 # The component may contain files which fall under a different license. The
 # authors of this component should specify the license in the header of such
@@ -174,7 +174,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "samtools_collate v0.2"
+  echo "samtools_collate 0.2.0"
   echo ""
   echo "Shuffles and groups reads in SAM/BAM/CRAM files together by their names."
   echo ""
@@ -519,10 +519,10 @@ sed 's#Using ##;s# \([0-9\.]*\)$#: \1#' > /var/software_versions.txt
 
 LABEL org.opencontainers.image.authors="Emma Rousseau"
 LABEL org.opencontainers.image.description="Companion container for running component samtools samtools_collate"
-LABEL org.opencontainers.image.created="2024-09-12T12:36:14Z"
+LABEL org.opencontainers.image.created="2024-09-12T13:23:15Z"
 LABEL org.opencontainers.image.source="https://github.com/samtools/samtools"
-LABEL org.opencontainers.image.revision="f22ab0eab58dcd6bff89d8d73fe951953ff1260f"
-LABEL org.opencontainers.image.version="v0.2"
+LABEL org.opencontainers.image.revision="5526b3e939030daea80595fa98387b469329bbfa"
+LABEL org.opencontainers.image.version="0.2.0"
 
 VIASHDOCKER
   fi
@@ -658,7 +658,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "samtools_collate v0.2"
+            echo "samtools_collate 0.2.0"
             exit
             ;;
         --input)
@@ -914,7 +914,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then
 
   # determine docker image id
   if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then
-    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/biobox/samtools/samtools_collate:v0.2'
+    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/biobox/samtools/samtools_collate:0.2.0'
   fi
 
   # print dockerfile

target/executable/samtools/samtools_faidx/.config.vsh.yaml

@@ -1,6 +1,6 @@
 name: "samtools_faidx"
 namespace: "samtools"
-version: "v0.2"
+version: "0.2.0"
 authors:
 - name: "Emma Rousseau"
   roles:
@@ -225,7 +225,7 @@ engines:
   id: "docker"
   image: "quay.io/biocontainers/samtools:1.19.2--h50ea8bc_1"
   target_registry: "images.viash-hub.com"
-  target_tag: "v0.2"
+  target_tag: "0.2.0"
   namespace_separator: "/"
   setup:
   - type: "docker"
@@ -242,22 +242,22 @@ build_info:
   engine: "docker|native"
   output: "target/executable/samtools/samtools_faidx"
   executable: "target/executable/samtools/samtools_faidx/samtools_faidx"
-  viash_version: "0.9.0-RC7"
-  git_commit: "f22ab0eab58dcd6bff89d8d73fe951953ff1260f"
+  viash_version: "0.9.0"
+  git_commit: "5526b3e939030daea80595fa98387b469329bbfa"
   git_remote: "https://github.com/viash-hub/biobox"
 package_config:
   name: "biobox"
-  version: "v0.2"
+  version: "0.2.0"
   description: "A collection of bioinformatics tools for working with sequence data.\n"
   info: null
-  viash_version: "0.9.0-RC7"
+  viash_version: "0.9.0"
   source: "src"
   target: "target"
   config_mods:
   - ".requirements.commands := ['ps']\n"
   - ".engines += { type: \"native\" }"
   - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
-  - ".engines[.type == 'docker'].target_tag := 'v0.2'"
+  - ".engines[.type == 'docker'].target_tag := '0.2.0'"
   keywords:
   - "bioinformatics"
   - "modules"

target/executable/samtools/samtools_faidx/samtools_faidx

@@ -1,10 +1,10 @@
 #!/usr/bin/env bash
 
-# samtools_faidx v0.2
+# samtools_faidx 0.2.0
 # 
-# This wrapper script is auto-generated by viash 0.9.0-RC7 and is thus a
-# derivative work thereof. This software comes with ABSOLUTELY NO WARRANTY from
-# Data Intuitive.
+# This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative
+# work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
+# Intuitive.
 # 
 # The component may contain files which fall under a different license. The
 # authors of this component should specify the license in the header of such
@@ -174,7 +174,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "samtools_faidx v0.2"
+  echo "samtools_faidx 0.2.0"
   echo ""
   echo "Indexes FASTA files to enable random access to fasta and fastq files."
   echo ""
@@ -512,10 +512,10 @@ sed 's#Using ##;s# \([0-9\.]*\)$#: \1#' > /var/software_versions.txt
 
 LABEL org.opencontainers.image.authors="Emma Rousseau"
 LABEL org.opencontainers.image.description="Companion container for running component samtools samtools_faidx"
-LABEL org.opencontainers.image.created="2024-09-12T12:36:14Z"
+LABEL org.opencontainers.image.created="2024-09-12T13:23:15Z"
 LABEL org.opencontainers.image.source="https://github.com/samtools/samtools"
-LABEL org.opencontainers.image.revision="f22ab0eab58dcd6bff89d8d73fe951953ff1260f"
-LABEL org.opencontainers.image.version="v0.2"
+LABEL org.opencontainers.image.revision="5526b3e939030daea80595fa98387b469329bbfa"
+LABEL org.opencontainers.image.version="0.2.0"
 
 VIASHDOCKER
   fi
@@ -651,7 +651,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "samtools_faidx v0.2"
+            echo "samtools_faidx 0.2.0"
             exit
             ;;
         --input)
@@ -857,7 +857,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then
 
   # determine docker image id
   if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then
-    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/biobox/samtools/samtools_faidx:v0.2'
+    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/biobox/samtools/samtools_faidx:0.2.0'
   fi
 
   # print dockerfile

target/executable/samtools/samtools_fasta/.config.vsh.yaml

@@ -1,6 +1,6 @@
 name: "samtools_fasta"
 namespace: "samtools"
-version: "v0.2"
+version: "0.2.0"
 authors:
 - name: "Emma Rousseau"
   roles:
@@ -415,7 +415,7 @@ engines:
   id: "docker"
   image: "quay.io/biocontainers/samtools:1.19.2--h50ea8bc_1"
   target_registry: "images.viash-hub.com"
-  target_tag: "v0.2"
+  target_tag: "0.2.0"
   namespace_separator: "/"
   setup:
   - type: "docker"
@@ -432,22 +432,22 @@ build_info:
   engine: "docker|native"
   output: "target/executable/samtools/samtools_fasta"
   executable: "target/executable/samtools/samtools_fasta/samtools_fasta"
-  viash_version: "0.9.0-RC7"
-  git_commit: "f22ab0eab58dcd6bff89d8d73fe951953ff1260f"
+  viash_version: "0.9.0"
+  git_commit: "5526b3e939030daea80595fa98387b469329bbfa"
   git_remote: "https://github.com/viash-hub/biobox"
 package_config:
   name: "biobox"
-  version: "v0.2"
+  version: "0.2.0"
   description: "A collection of bioinformatics tools for working with sequence data.\n"
   info: null
-  viash_version: "0.9.0-RC7"
+  viash_version: "0.9.0"
   source: "src"
   target: "target"
   config_mods:
   - ".requirements.commands := ['ps']\n"
   - ".engines += { type: \"native\" }"
   - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
-  - ".engines[.type == 'docker'].target_tag := 'v0.2'"
+  - ".engines[.type == 'docker'].target_tag := '0.2.0'"
   keywords:
   - "bioinformatics"
   - "modules"

target/executable/samtools/samtools_fasta/samtools_fasta

@@ -1,10 +1,10 @@
 #!/usr/bin/env bash
 
-# samtools_fasta v0.2
+# samtools_fasta 0.2.0
 # 
-# This wrapper script is auto-generated by viash 0.9.0-RC7 and is thus a
-# derivative work thereof. This software comes with ABSOLUTELY NO WARRANTY from
-# Data Intuitive.
+# This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative
+# work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
+# Intuitive.
 # 
 # The component may contain files which fall under a different license. The
 # authors of this component should specify the license in the header of such
@@ -174,7 +174,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "samtools_fasta v0.2"
+  echo "samtools_fasta 0.2.0"
   echo ""
   echo "Converts a SAM, BAM or CRAM to FASTA format."
   echo ""
@@ -625,10 +625,10 @@ sed 's#Using ##;s# \([0-9\.]*\)$#: \1#' > /var/software_versions.txt
 
 LABEL org.opencontainers.image.authors="Emma Rousseau"
 LABEL org.opencontainers.image.description="Companion container for running component samtools samtools_fasta"
-LABEL org.opencontainers.image.created="2024-09-12T12:36:15Z"
+LABEL org.opencontainers.image.created="2024-09-12T13:23:16Z"
 LABEL org.opencontainers.image.source="https://github.com/samtools/samtools"
-LABEL org.opencontainers.image.revision="f22ab0eab58dcd6bff89d8d73fe951953ff1260f"
-LABEL org.opencontainers.image.version="v0.2"
+LABEL org.opencontainers.image.revision="5526b3e939030daea80595fa98387b469329bbfa"
+LABEL org.opencontainers.image.version="0.2.0"
 
 VIASHDOCKER
   fi
@@ -764,7 +764,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "samtools_fasta v0.2"
+            echo "samtools_fasta 0.2.0"
             exit
             ;;
         --input)
@@ -1215,7 +1215,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then
 
   # determine docker image id
   if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then
-    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/biobox/samtools/samtools_fasta:v0.2'
+    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/biobox/samtools/samtools_fasta:0.2.0'
   fi
 
   # print dockerfile

target/executable/samtools/samtools_fastq/.config.vsh.yaml

@@ -1,6 +1,6 @@
 name: "samtools_fastq"
 namespace: "samtools"
-version: "v0.2"
+version: "0.2.0"
 authors:
 - name: "Emma Rousseau"
   roles:
@@ -415,7 +415,7 @@ engines:
   id: "docker"
   image: "quay.io/biocontainers/samtools:1.19.2--h50ea8bc_1"
   target_registry: "images.viash-hub.com"
-  target_tag: "v0.2"
+  target_tag: "0.2.0"
   namespace_separator: "/"
   setup:
   - type: "docker"
@@ -432,22 +432,22 @@ build_info:
   engine: "docker|native"
   output: "target/executable/samtools/samtools_fastq"
   executable: "target/executable/samtools/samtools_fastq/samtools_fastq"
-  viash_version: "0.9.0-RC7"
-  git_commit: "f22ab0eab58dcd6bff89d8d73fe951953ff1260f"
+  viash_version: "0.9.0"
+  git_commit: "5526b3e939030daea80595fa98387b469329bbfa"
   git_remote: "https://github.com/viash-hub/biobox"
 package_config:
   name: "biobox"
-  version: "v0.2"
+  version: "0.2.0"
   description: "A collection of bioinformatics tools for working with sequence data.\n"
   info: null
-  viash_version: "0.9.0-RC7"
+  viash_version: "0.9.0"
   source: "src"
   target: "target"
   config_mods:
   - ".requirements.commands := ['ps']\n"
   - ".engines += { type: \"native\" }"
   - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
-  - ".engines[.type == 'docker'].target_tag := 'v0.2'"
+  - ".engines[.type == 'docker'].target_tag := '0.2.0'"
   keywords:
   - "bioinformatics"
   - "modules"

target/executable/samtools/samtools_fastq/samtools_fastq

@@ -1,10 +1,10 @@
 #!/usr/bin/env bash
 
-# samtools_fastq v0.2
+# samtools_fastq 0.2.0
 # 
-# This wrapper script is auto-generated by viash 0.9.0-RC7 and is thus a
-# derivative work thereof. This software comes with ABSOLUTELY NO WARRANTY from
-# Data Intuitive.
+# This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative
+# work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
+# Intuitive.
 # 
 # The component may contain files which fall under a different license. The
 # authors of this component should specify the license in the header of such
@@ -174,7 +174,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "samtools_fastq v0.2"
+  echo "samtools_fastq 0.2.0"
   echo ""
   echo "Converts a SAM, BAM or CRAM to FASTQ format."
   echo ""
@@ -626,10 +626,10 @@ sed 's#Using ##;s# \([0-9\.]*\)$#: \1#' > /var/software_versions.txt
 
 LABEL org.opencontainers.image.authors="Emma Rousseau"
 LABEL org.opencontainers.image.description="Companion container for running component samtools samtools_fastq"
-LABEL org.opencontainers.image.created="2024-09-12T12:36:14Z"
+LABEL org.opencontainers.image.created="2024-09-12T13:23:15Z"
 LABEL org.opencontainers.image.source="https://github.com/samtools/samtools"
-LABEL org.opencontainers.image.revision="f22ab0eab58dcd6bff89d8d73fe951953ff1260f"
-LABEL org.opencontainers.image.version="v0.2"
+LABEL org.opencontainers.image.revision="5526b3e939030daea80595fa98387b469329bbfa"
+LABEL org.opencontainers.image.version="0.2.0"
 
 VIASHDOCKER
   fi
@@ -765,7 +765,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "samtools_fastq v0.2"
+            echo "samtools_fastq 0.2.0"
             exit
             ;;
         --input)
@@ -1216,7 +1216,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then
 
   # determine docker image id
   if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then
-    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/biobox/samtools/samtools_fastq:v0.2'
+    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/biobox/samtools/samtools_fastq:0.2.0'
   fi
 
   # print dockerfile

target/executable/samtools/samtools_flagstat/.config.vsh.yaml

@@ -1,6 +1,6 @@
 name: "samtools_flagstat"
 namespace: "samtools"
-version: "v0.2"
+version: "0.2.0"
 authors:
 - name: "Emma Rousseau"
   roles:
@@ -155,7 +155,7 @@ engines:
   id: "docker"
   image: "quay.io/biocontainers/samtools:1.19.2--h50ea8bc_1"
   target_registry: "images.viash-hub.com"
-  target_tag: "v0.2"
+  target_tag: "0.2.0"
   namespace_separator: "/"
   setup:
   - type: "docker"
@@ -172,22 +172,22 @@ build_info:
   engine: "docker|native"
   output: "target/executable/samtools/samtools_flagstat"
   executable: "target/executable/samtools/samtools_flagstat/samtools_flagstat"
-  viash_version: "0.9.0-RC7"
-  git_commit: "f22ab0eab58dcd6bff89d8d73fe951953ff1260f"
+  viash_version: "0.9.0"
+  git_commit: "5526b3e939030daea80595fa98387b469329bbfa"
   git_remote: "https://github.com/viash-hub/biobox"
 package_config:
   name: "biobox"
-  version: "v0.2"
+  version: "0.2.0"
   description: "A collection of bioinformatics tools for working with sequence data.\n"
   info: null
-  viash_version: "0.9.0-RC7"
+  viash_version: "0.9.0"
   source: "src"
   target: "target"
   config_mods:
   - ".requirements.commands := ['ps']\n"
   - ".engines += { type: \"native\" }"
   - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
-  - ".engines[.type == 'docker'].target_tag := 'v0.2'"
+  - ".engines[.type == 'docker'].target_tag := '0.2.0'"
   keywords:
   - "bioinformatics"
   - "modules"

target/executable/samtools/samtools_flagstat/samtools_flagstat

@@ -1,10 +1,10 @@
 #!/usr/bin/env bash
 
-# samtools_flagstat v0.2
+# samtools_flagstat 0.2.0
 # 
-# This wrapper script is auto-generated by viash 0.9.0-RC7 and is thus a
-# derivative work thereof. This software comes with ABSOLUTELY NO WARRANTY from
-# Data Intuitive.
+# This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative
+# work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
+# Intuitive.
 # 
 # The component may contain files which fall under a different license. The
 # authors of this component should specify the license in the header of such
@@ -174,7 +174,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "samtools_flagstat v0.2"
+  echo "samtools_flagstat 0.2.0"
   echo ""
   echo "Counts the number of alignments in SAM/BAM/CRAM files for each FLAG type."
   echo ""
@@ -474,10 +474,10 @@ sed 's#Using ##;s# \([0-9\.]*\)$#: \1#' > /var/software_versions.txt
 
 LABEL org.opencontainers.image.authors="Emma Rousseau"
 LABEL org.opencontainers.image.description="Companion container for running component samtools samtools_flagstat"
-LABEL org.opencontainers.image.created="2024-09-12T12:36:13Z"
+LABEL org.opencontainers.image.created="2024-09-12T13:23:14Z"
 LABEL org.opencontainers.image.source="https://github.com/samtools/samtools"
-LABEL org.opencontainers.image.revision="f22ab0eab58dcd6bff89d8d73fe951953ff1260f"
-LABEL org.opencontainers.image.version="v0.2"
+LABEL org.opencontainers.image.revision="5526b3e939030daea80595fa98387b469329bbfa"
+LABEL org.opencontainers.image.version="0.2.0"
 
 VIASHDOCKER
   fi
@@ -613,7 +613,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "samtools_flagstat v0.2"
+            echo "samtools_flagstat 0.2.0"
             exit
             ;;
         --bam)
@@ -737,7 +737,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then
 
   # determine docker image id
   if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then
-    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/biobox/samtools/samtools_flagstat:v0.2'
+    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/biobox/samtools/samtools_flagstat:0.2.0'
   fi
 
   # print dockerfile

target/executable/samtools/samtools_idxstats/.config.vsh.yaml

@@ -1,6 +1,6 @@
 name: "samtools_idxstats"
 namespace: "samtools"
-version: "v0.2"
+version: "0.2.0"
 authors:
 - name: "Emma Rousseau"
   roles:
@@ -165,7 +165,7 @@ engines:
   id: "docker"
   image: "quay.io/biocontainers/samtools:1.19.2--h50ea8bc_1"
   target_registry: "images.viash-hub.com"
-  target_tag: "v0.2"
+  target_tag: "0.2.0"
   namespace_separator: "/"
   setup:
   - type: "docker"
@@ -182,22 +182,22 @@ build_info:
   engine: "docker|native"
   output: "target/executable/samtools/samtools_idxstats"
   executable: "target/executable/samtools/samtools_idxstats/samtools_idxstats"
-  viash_version: "0.9.0-RC7"
-  git_commit: "f22ab0eab58dcd6bff89d8d73fe951953ff1260f"
+  viash_version: "0.9.0"
+  git_commit: "5526b3e939030daea80595fa98387b469329bbfa"
   git_remote: "https://github.com/viash-hub/biobox"
 package_config:
   name: "biobox"
-  version: "v0.2"
+  version: "0.2.0"
   description: "A collection of bioinformatics tools for working with sequence data.\n"
   info: null
-  viash_version: "0.9.0-RC7"
+  viash_version: "0.9.0"
   source: "src"
   target: "target"
   config_mods:
   - ".requirements.commands := ['ps']\n"
   - ".engines += { type: \"native\" }"
   - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
-  - ".engines[.type == 'docker'].target_tag := 'v0.2'"
+  - ".engines[.type == 'docker'].target_tag := '0.2.0'"
   keywords:
   - "bioinformatics"
   - "modules"

target/executable/samtools/samtools_idxstats/samtools_idxstats

@@ -1,10 +1,10 @@
 #!/usr/bin/env bash
 
-# samtools_idxstats v0.2
+# samtools_idxstats 0.2.0
 # 
-# This wrapper script is auto-generated by viash 0.9.0-RC7 and is thus a
-# derivative work thereof. This software comes with ABSOLUTELY NO WARRANTY from
-# Data Intuitive.
+# This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative
+# work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
+# Intuitive.
 # 
 # The component may contain files which fall under a different license. The
 # authors of this component should specify the license in the header of such
@@ -174,7 +174,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "samtools_idxstats v0.2"
+  echo "samtools_idxstats 0.2.0"
   echo ""
   echo "Reports alignment summary statistics for a BAM file."
   echo ""
@@ -478,10 +478,10 @@ sed 's#Using ##;s# \([0-9\.]*\)$#: \1#' > /var/software_versions.txt
 
 LABEL org.opencontainers.image.authors="Emma Rousseau"
 LABEL org.opencontainers.image.description="Companion container for running component samtools samtools_idxstats"
-LABEL org.opencontainers.image.created="2024-09-12T12:36:13Z"
+LABEL org.opencontainers.image.created="2024-09-12T13:23:14Z"
 LABEL org.opencontainers.image.source="https://github.com/samtools/samtools"
-LABEL org.opencontainers.image.revision="f22ab0eab58dcd6bff89d8d73fe951953ff1260f"
-LABEL org.opencontainers.image.version="v0.2"
+LABEL org.opencontainers.image.revision="5526b3e939030daea80595fa98387b469329bbfa"
+LABEL org.opencontainers.image.version="0.2.0"
 
 VIASHDOCKER
   fi
@@ -617,7 +617,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "samtools_idxstats v0.2"
+            echo "samtools_idxstats 0.2.0"
             exit
             ;;
         --bam)
@@ -752,7 +752,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then
 
   # determine docker image id
   if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then
-    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/biobox/samtools/samtools_idxstats:v0.2'
+    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/biobox/samtools/samtools_idxstats:0.2.0'
   fi
 
   # print dockerfile

target/executable/samtools/samtools_index/.config.vsh.yaml

@@ -1,6 +1,6 @@
 name: "samtools_index"
 namespace: "samtools"
-version: "v0.2"
+version: "0.2.0"
 authors:
 - name: "Emma Rousseau"
   roles:
@@ -171,7 +171,7 @@ engines:
   id: "docker"
   image: "quay.io/biocontainers/samtools:1.19.2--h50ea8bc_1"
   target_registry: "images.viash-hub.com"
-  target_tag: "v0.2"
+  target_tag: "0.2.0"
   namespace_separator: "/"
   setup:
   - type: "docker"
@@ -188,22 +188,22 @@ build_info:
   engine: "docker|native"
   output: "target/executable/samtools/samtools_index"
   executable: "target/executable/samtools/samtools_index/samtools_index"
-  viash_version: "0.9.0-RC7"
-  git_commit: "f22ab0eab58dcd6bff89d8d73fe951953ff1260f"
+  viash_version: "0.9.0"
+  git_commit: "5526b3e939030daea80595fa98387b469329bbfa"
   git_remote: "https://github.com/viash-hub/biobox"
 package_config:
   name: "biobox"
-  version: "v0.2"
+  version: "0.2.0"
   description: "A collection of bioinformatics tools for working with sequence data.\n"
   info: null
-  viash_version: "0.9.0-RC7"
+  viash_version: "0.9.0"
   source: "src"
   target: "target"
   config_mods:
   - ".requirements.commands := ['ps']\n"
   - ".engines += { type: \"native\" }"
   - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
-  - ".engines[.type == 'docker'].target_tag := 'v0.2'"
+  - ".engines[.type == 'docker'].target_tag := '0.2.0'"
   keywords:
   - "bioinformatics"
   - "modules"

target/executable/samtools/samtools_index/samtools_index

@@ -1,10 +1,10 @@
 #!/usr/bin/env bash
 
-# samtools_index v0.2
+# samtools_index 0.2.0
 # 
-# This wrapper script is auto-generated by viash 0.9.0-RC7 and is thus a
-# derivative work thereof. This software comes with ABSOLUTELY NO WARRANTY from
-# Data Intuitive.
+# This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative
+# work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
+# Intuitive.
 # 
 # The component may contain files which fall under a different license. The
 # authors of this component should specify the license in the header of such
@@ -174,7 +174,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "samtools_index v0.2"
+  echo "samtools_index 0.2.0"
   echo ""
   echo "Index SAM/BAM/CRAM files."
   echo ""
@@ -485,10 +485,10 @@ sed 's#Using ##;s# \([0-9\.]*\)$#: \1#' > /var/software_versions.txt
 
 LABEL org.opencontainers.image.authors="Emma Rousseau"
 LABEL org.opencontainers.image.description="Companion container for running component samtools samtools_index"
-LABEL org.opencontainers.image.created="2024-09-12T12:36:12Z"
+LABEL org.opencontainers.image.created="2024-09-12T13:23:13Z"
 LABEL org.opencontainers.image.source="https://github.com/samtools/samtools"
-LABEL org.opencontainers.image.revision="f22ab0eab58dcd6bff89d8d73fe951953ff1260f"
-LABEL org.opencontainers.image.version="v0.2"
+LABEL org.opencontainers.image.revision="5526b3e939030daea80595fa98387b469329bbfa"
+LABEL org.opencontainers.image.version="0.2.0"
 
 VIASHDOCKER
   fi
@@ -624,7 +624,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "samtools_index v0.2"
+            echo "samtools_index 0.2.0"
             exit
             ;;
         --input)
@@ -780,7 +780,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then
 
   # determine docker image id
   if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then
-    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/biobox/samtools/samtools_index:v0.2'
+    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/biobox/samtools/samtools_index:0.2.0'
   fi
 
   # print dockerfile

target/executable/samtools/samtools_sort/.config.vsh.yaml

@@ -1,6 +1,6 @@
 name: "samtools_sort"
 namespace: "samtools"
-version: "v0.2"
+version: "0.2.0"
 authors:
 - name: "Emma Rousseau"
   roles:
@@ -314,7 +314,7 @@ engines:
   id: "docker"
   image: "quay.io/biocontainers/samtools:1.19.2--h50ea8bc_1"
   target_registry: "images.viash-hub.com"
-  target_tag: "v0.2"
+  target_tag: "0.2.0"
   namespace_separator: "/"
   setup:
   - type: "docker"
@@ -331,22 +331,22 @@ build_info:
   engine: "docker|native"
   output: "target/executable/samtools/samtools_sort"
   executable: "target/executable/samtools/samtools_sort/samtools_sort"
-  viash_version: "0.9.0-RC7"
-  git_commit: "f22ab0eab58dcd6bff89d8d73fe951953ff1260f"
+  viash_version: "0.9.0"
+  git_commit: "5526b3e939030daea80595fa98387b469329bbfa"
   git_remote: "https://github.com/viash-hub/biobox"
 package_config:
   name: "biobox"
-  version: "v0.2"
+  version: "0.2.0"
   description: "A collection of bioinformatics tools for working with sequence data.\n"
   info: null
-  viash_version: "0.9.0-RC7"
+  viash_version: "0.9.0"
   source: "src"
   target: "target"
   config_mods:
   - ".requirements.commands := ['ps']\n"
   - ".engines += { type: \"native\" }"
   - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
-  - ".engines[.type == 'docker'].target_tag := 'v0.2'"
+  - ".engines[.type == 'docker'].target_tag := '0.2.0'"
   keywords:
   - "bioinformatics"
   - "modules"

target/executable/samtools/samtools_sort/samtools_sort

@@ -1,10 +1,10 @@
 #!/usr/bin/env bash
 
-# samtools_sort v0.2
+# samtools_sort 0.2.0
 # 
-# This wrapper script is auto-generated by viash 0.9.0-RC7 and is thus a
-# derivative work thereof. This software comes with ABSOLUTELY NO WARRANTY from
-# Data Intuitive.
+# This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative
+# work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
+# Intuitive.
 # 
 # The component may contain files which fall under a different license. The
 # authors of this component should specify the license in the header of such
@@ -174,7 +174,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "samtools_sort v0.2"
+  echo "samtools_sort 0.2.0"
   echo ""
   echo "Sort SAM/BAM/CRAM file."
   echo ""
@@ -556,10 +556,10 @@ sed 's#Using ##;s# \([0-9\.]*\)$#: \1#' > /var/software_versions.txt
 
 LABEL org.opencontainers.image.authors="Emma Rousseau"
 LABEL org.opencontainers.image.description="Companion container for running component samtools samtools_sort"
-LABEL org.opencontainers.image.created="2024-09-12T12:36:15Z"
+LABEL org.opencontainers.image.created="2024-09-12T13:23:16Z"
 LABEL org.opencontainers.image.source="https://github.com/samtools/samtools"
-LABEL org.opencontainers.image.revision="f22ab0eab58dcd6bff89d8d73fe951953ff1260f"
-LABEL org.opencontainers.image.version="v0.2"
+LABEL org.opencontainers.image.revision="5526b3e939030daea80595fa98387b469329bbfa"
+LABEL org.opencontainers.image.version="0.2.0"
 
 VIASHDOCKER
   fi
@@ -695,7 +695,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "samtools_sort v0.2"
+            echo "samtools_sort 0.2.0"
             exit
             ;;
         --input)
@@ -1035,7 +1035,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then
 
   # determine docker image id
   if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then
-    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/biobox/samtools/samtools_sort:v0.2'
+    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/biobox/samtools/samtools_sort:0.2.0'
   fi
 
   # print dockerfile

target/executable/samtools/samtools_stats/.config.vsh.yaml

@@ -1,6 +1,6 @@
 name: "samtools_stats"
 namespace: "samtools"
-version: "v0.2"
+version: "0.2.0"
 authors:
 - name: "Emma Rousseau"
   roles:
@@ -383,7 +383,7 @@ engines:
   id: "docker"
   image: "quay.io/biocontainers/samtools:1.19.2--h50ea8bc_1"
   target_registry: "images.viash-hub.com"
-  target_tag: "v0.2"
+  target_tag: "0.2.0"
   namespace_separator: "/"
   setup:
   - type: "docker"
@@ -400,22 +400,22 @@ build_info:
   engine: "docker|native"
   output: "target/executable/samtools/samtools_stats"
   executable: "target/executable/samtools/samtools_stats/samtools_stats"
-  viash_version: "0.9.0-RC7"
-  git_commit: "f22ab0eab58dcd6bff89d8d73fe951953ff1260f"
+  viash_version: "0.9.0"
+  git_commit: "5526b3e939030daea80595fa98387b469329bbfa"
   git_remote: "https://github.com/viash-hub/biobox"
 package_config:
   name: "biobox"
-  version: "v0.2"
+  version: "0.2.0"
   description: "A collection of bioinformatics tools for working with sequence data.\n"
   info: null
-  viash_version: "0.9.0-RC7"
+  viash_version: "0.9.0"
   source: "src"
   target: "target"
   config_mods:
   - ".requirements.commands := ['ps']\n"
   - ".engines += { type: \"native\" }"
   - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
-  - ".engines[.type == 'docker'].target_tag := 'v0.2'"
+  - ".engines[.type == 'docker'].target_tag := '0.2.0'"
   keywords:
   - "bioinformatics"
   - "modules"

target/executable/samtools/samtools_stats/samtools_stats

@@ -1,10 +1,10 @@
 #!/usr/bin/env bash
 
-# samtools_stats v0.2
+# samtools_stats 0.2.0
 # 
-# This wrapper script is auto-generated by viash 0.9.0-RC7 and is thus a
-# derivative work thereof. This software comes with ABSOLUTELY NO WARRANTY from
-# Data Intuitive.
+# This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative
+# work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
+# Intuitive.
 # 
 # The component may contain files which fall under a different license. The
 # authors of this component should specify the license in the header of such
@@ -174,7 +174,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "samtools_stats v0.2"
+  echo "samtools_stats 0.2.0"
   echo ""
   echo "Reports alignment summary statistics for a BAM file."
   echo ""
@@ -575,10 +575,10 @@ sed 's#Using ##;s# \([0-9\.]*\)$#: \1#' > /var/software_versions.txt
 
 LABEL org.opencontainers.image.authors="Emma Rousseau"
 LABEL org.opencontainers.image.description="Companion container for running component samtools samtools_stats"
-LABEL org.opencontainers.image.created="2024-09-12T12:36:16Z"
+LABEL org.opencontainers.image.created="2024-09-12T13:23:16Z"
 LABEL org.opencontainers.image.source="https://github.com/samtools/samtools"
-LABEL org.opencontainers.image.revision="f22ab0eab58dcd6bff89d8d73fe951953ff1260f"
-LABEL org.opencontainers.image.version="v0.2"
+LABEL org.opencontainers.image.revision="5526b3e939030daea80595fa98387b469329bbfa"
+LABEL org.opencontainers.image.version="0.2.0"
 
 VIASHDOCKER
   fi
@@ -714,7 +714,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "samtools_stats v0.2"
+            echo "samtools_stats 0.2.0"
             exit
             ;;
         --input)
@@ -1158,7 +1158,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then
 
   # determine docker image id
   if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then
-    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/biobox/samtools/samtools_stats:v0.2'
+    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/biobox/samtools/samtools_stats:0.2.0'
   fi
 
   # print dockerfile

target/executable/samtools/samtools_view/.config.vsh.yaml

@@ -1,6 +1,6 @@
 name: "samtools_view"
 namespace: "samtools"
-version: "v0.2"
+version: "0.2.0"
 authors:
 - name: "Emma Rousseau"
   roles:
@@ -647,7 +647,7 @@ engines:
   id: "docker"
   image: "quay.io/biocontainers/samtools:1.19.2--h50ea8bc_1"
   target_registry: "images.viash-hub.com"
-  target_tag: "v0.2"
+  target_tag: "0.2.0"
   namespace_separator: "/"
   setup:
   - type: "docker"
@@ -664,22 +664,22 @@ build_info:
   engine: "docker|native"
   output: "target/executable/samtools/samtools_view"
   executable: "target/executable/samtools/samtools_view/samtools_view"
-  viash_version: "0.9.0-RC7"
-  git_commit: "f22ab0eab58dcd6bff89d8d73fe951953ff1260f"
+  viash_version: "0.9.0"
+  git_commit: "5526b3e939030daea80595fa98387b469329bbfa"
   git_remote: "https://github.com/viash-hub/biobox"
 package_config:
   name: "biobox"
-  version: "v0.2"
+  version: "0.2.0"
   description: "A collection of bioinformatics tools for working with sequence data.\n"
   info: null
-  viash_version: "0.9.0-RC7"
+  viash_version: "0.9.0"
   source: "src"
   target: "target"
   config_mods:
   - ".requirements.commands := ['ps']\n"
   - ".engines += { type: \"native\" }"
   - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
-  - ".engines[.type == 'docker'].target_tag := 'v0.2'"
+  - ".engines[.type == 'docker'].target_tag := '0.2.0'"
   keywords:
   - "bioinformatics"
   - "modules"

target/executable/samtools/samtools_view/samtools_view

@@ -1,10 +1,10 @@
 #!/usr/bin/env bash
 
-# samtools_view v0.2
+# samtools_view 0.2.0
 # 
-# This wrapper script is auto-generated by viash 0.9.0-RC7 and is thus a
-# derivative work thereof. This software comes with ABSOLUTELY NO WARRANTY from
-# Data Intuitive.
+# This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative
+# work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
+# Intuitive.
 # 
 # The component may contain files which fall under a different license. The
 # authors of this component should specify the license in the header of such
@@ -174,7 +174,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "samtools_view v0.2"
+  echo "samtools_view 0.2.0"
   echo ""
   echo "Views and converts SAM/BAM/CRAM files."
   echo ""
@@ -825,10 +825,10 @@ sed 's#Using ##;s# \([0-9\.]*\)$#: \1#' > /var/software_versions.txt
 
 LABEL org.opencontainers.image.authors="Emma Rousseau"
 LABEL org.opencontainers.image.description="Companion container for running component samtools samtools_view"
-LABEL org.opencontainers.image.created="2024-09-12T12:36:13Z"
+LABEL org.opencontainers.image.created="2024-09-12T13:23:14Z"
 LABEL org.opencontainers.image.source="https://github.com/samtools/samtools"
-LABEL org.opencontainers.image.revision="f22ab0eab58dcd6bff89d8d73fe951953ff1260f"
-LABEL org.opencontainers.image.version="v0.2"
+LABEL org.opencontainers.image.revision="5526b3e939030daea80595fa98387b469329bbfa"
+LABEL org.opencontainers.image.version="0.2.0"
 
 VIASHDOCKER
   fi
@@ -964,7 +964,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "samtools_view v0.2"
+            echo "samtools_view 0.2.0"
             exit
             ;;
         --input)
@@ -1636,7 +1636,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then
 
   # determine docker image id
   if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then
-    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/biobox/samtools/samtools_view:v0.2'
+    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/biobox/samtools/samtools_view:0.2.0'
   fi
 
   # print dockerfile

target/executable/seqtk/seqtk_sample/.config.vsh.yaml

@@ -1,6 +1,6 @@
 name: "seqtk_sample"
 namespace: "seqtk"
-version: "v0.2"
+version: "0.2.0"
 authors:
 - name: "Jakub Majercik"
   roles:
@@ -160,7 +160,7 @@ engines:
   id: "docker"
   image: "quay.io/biocontainers/seqtk:1.4--he4a0461_2"
   target_registry: "images.viash-hub.com"
-  target_tag: "v0.2"
+  target_tag: "0.2.0"
   namespace_separator: "/"
   entrypoint: []
   cmd: null
@@ -172,22 +172,22 @@ build_info:
   engine: "docker|native"
   output: "target/executable/seqtk/seqtk_sample"
   executable: "target/executable/seqtk/seqtk_sample/seqtk_sample"
-  viash_version: "0.9.0-RC7"
-  git_commit: "f22ab0eab58dcd6bff89d8d73fe951953ff1260f"
+  viash_version: "0.9.0"
+  git_commit: "5526b3e939030daea80595fa98387b469329bbfa"
   git_remote: "https://github.com/viash-hub/biobox"
 package_config:
   name: "biobox"
-  version: "v0.2"
+  version: "0.2.0"
   description: "A collection of bioinformatics tools for working with sequence data.\n"
   info: null
-  viash_version: "0.9.0-RC7"
+  viash_version: "0.9.0"
   source: "src"
   target: "target"
   config_mods:
   - ".requirements.commands := ['ps']\n"
   - ".engines += { type: \"native\" }"
   - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
-  - ".engines[.type == 'docker'].target_tag := 'v0.2'"
+  - ".engines[.type == 'docker'].target_tag := '0.2.0'"
   keywords:
   - "bioinformatics"
   - "modules"

target/executable/seqtk/seqtk_sample/seqtk_sample

@@ -1,10 +1,10 @@
 #!/usr/bin/env bash
 
-# seqtk_sample v0.2
+# seqtk_sample 0.2.0
 # 
-# This wrapper script is auto-generated by viash 0.9.0-RC7 and is thus a
-# derivative work thereof. This software comes with ABSOLUTELY NO WARRANTY from
-# Data Intuitive.
+# This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative
+# work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
+# Intuitive.
 # 
 # The component may contain files which fall under a different license. The
 # authors of this component should specify the license in the header of such
@@ -174,7 +174,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "seqtk_sample v0.2"
+  echo "seqtk_sample 0.2.0"
   echo ""
   echo "Subsamples sequences from FASTA/Q files."
   echo ""
@@ -481,10 +481,10 @@ FROM quay.io/biocontainers/seqtk:1.4--he4a0461_2
 ENTRYPOINT []
 LABEL org.opencontainers.image.authors="Jakub Majercik"
 LABEL org.opencontainers.image.description="Companion container for running component seqtk seqtk_sample"
-LABEL org.opencontainers.image.created="2024-09-12T12:36:27Z"
+LABEL org.opencontainers.image.created="2024-09-12T13:23:28Z"
 LABEL org.opencontainers.image.source="https://github.com/lh3/seqtk/tree/v1.4"
-LABEL org.opencontainers.image.revision="f22ab0eab58dcd6bff89d8d73fe951953ff1260f"
-LABEL org.opencontainers.image.version="v0.2"
+LABEL org.opencontainers.image.revision="5526b3e939030daea80595fa98387b469329bbfa"
+LABEL org.opencontainers.image.version="0.2.0"
 
 VIASHDOCKER
   fi
@@ -620,7 +620,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "seqtk_sample v0.2"
+            echo "seqtk_sample 0.2.0"
             exit
             ;;
         --input)
@@ -760,7 +760,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then
 
   # determine docker image id
   if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then
-    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/biobox/seqtk/seqtk_sample:v0.2'
+    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/biobox/seqtk/seqtk_sample:0.2.0'
   fi
 
   # print dockerfile

target/executable/seqtk/seqtk_subseq/.config.vsh.yaml

@@ -1,6 +1,6 @@
 name: "seqtk_subseq"
 namespace: "seqtk"
-version: "v0.2"
+version: "0.2.0"
 authors:
 - name: "Theodoro Gasperin Terra Camargo"
   roles:
@@ -179,7 +179,7 @@ engines:
   id: "docker"
   image: "quay.io/biocontainers/seqtk:1.4--he4a0461_2"
   target_registry: "images.viash-hub.com"
-  target_tag: "v0.2"
+  target_tag: "0.2.0"
   namespace_separator: "/"
   setup:
   - type: "docker"
@@ -195,22 +195,22 @@ build_info:
   engine: "docker|native"
   output: "target/executable/seqtk/seqtk_subseq"
   executable: "target/executable/seqtk/seqtk_subseq/seqtk_subseq"
-  viash_version: "0.9.0-RC7"
-  git_commit: "f22ab0eab58dcd6bff89d8d73fe951953ff1260f"
+  viash_version: "0.9.0"
+  git_commit: "5526b3e939030daea80595fa98387b469329bbfa"
   git_remote: "https://github.com/viash-hub/biobox"
 package_config:
   name: "biobox"
-  version: "v0.2"
+  version: "0.2.0"
   description: "A collection of bioinformatics tools for working with sequence data.\n"
   info: null
-  viash_version: "0.9.0-RC7"
+  viash_version: "0.9.0"
   source: "src"
   target: "target"
   config_mods:
   - ".requirements.commands := ['ps']\n"
   - ".engines += { type: \"native\" }"
   - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
-  - ".engines[.type == 'docker'].target_tag := 'v0.2'"
+  - ".engines[.type == 'docker'].target_tag := '0.2.0'"
   keywords:
   - "bioinformatics"
   - "modules"

target/executable/seqtk/seqtk_subseq/seqtk_subseq

@@ -1,10 +1,10 @@
 #!/usr/bin/env bash
 
-# seqtk_subseq v0.2
+# seqtk_subseq 0.2.0
 # 
-# This wrapper script is auto-generated by viash 0.9.0-RC7 and is thus a
-# derivative work thereof. This software comes with ABSOLUTELY NO WARRANTY from
-# Data Intuitive.
+# This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative
+# work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
+# Intuitive.
 # 
 # The component may contain files which fall under a different license. The
 # authors of this component should specify the license in the header of such
@@ -174,7 +174,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "seqtk_subseq v0.2"
+  echo "seqtk_subseq 0.2.0"
   echo ""
   echo "Extract subsequences from FASTA/Q files. Takes as input a FASTA/Q file and a"
   echo "name.lst (sequence ids file) or a reg.bed (genomic regions file)."
@@ -491,10 +491,10 @@ RUN echo $(echo $(seqtk 2>&1) | sed -n 's/.*\(Version: [^ ]*\).*/\1/p') > /var/s
 
 LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo"
 LABEL org.opencontainers.image.description="Companion container for running component seqtk seqtk_subseq"
-LABEL org.opencontainers.image.created="2024-09-12T12:36:27Z"
+LABEL org.opencontainers.image.created="2024-09-12T13:23:27Z"
 LABEL org.opencontainers.image.source="https://github.com/lh3/seqtk/tree/v1.4"
-LABEL org.opencontainers.image.revision="f22ab0eab58dcd6bff89d8d73fe951953ff1260f"
-LABEL org.opencontainers.image.version="v0.2"
+LABEL org.opencontainers.image.revision="5526b3e939030daea80595fa98387b469329bbfa"
+LABEL org.opencontainers.image.version="0.2.0"
 
 VIASHDOCKER
   fi
@@ -630,7 +630,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "seqtk_subseq v0.2"
+            echo "seqtk_subseq 0.2.0"
             exit
             ;;
         --input)
@@ -797,7 +797,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then
 
   # determine docker image id
   if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then
-    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/biobox/seqtk/seqtk_subseq:v0.2'
+    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/biobox/seqtk/seqtk_subseq:0.2.0'
   fi
 
   # print dockerfile

target/executable/star/star_align_reads/.config.vsh.yaml

@@ -1,6 +1,6 @@
 name: "star_align_reads"
 namespace: "star"
-version: "v0.2"
+version: "0.2.0"
 authors:
 - name: "Angela Oliveira Pisco"
   roles:
@@ -2624,7 +2624,7 @@ engines:
   id: "docker"
   image: "python:3.12-slim"
   target_registry: "images.viash-hub.com"
-  target_tag: "v0.2"
+  target_tag: "0.2.0"
   namespace_separator: "/"
   setup:
   - type: "apt"
@@ -2662,22 +2662,22 @@ build_info:
   engine: "docker|native"
   output: "target/executable/star/star_align_reads"
   executable: "target/executable/star/star_align_reads/star_align_reads"
-  viash_version: "0.9.0-RC7"
-  git_commit: "f22ab0eab58dcd6bff89d8d73fe951953ff1260f"
+  viash_version: "0.9.0"
+  git_commit: "5526b3e939030daea80595fa98387b469329bbfa"
   git_remote: "https://github.com/viash-hub/biobox"
 package_config:
   name: "biobox"
-  version: "v0.2"
+  version: "0.2.0"
   description: "A collection of bioinformatics tools for working with sequence data.\n"
   info: null
-  viash_version: "0.9.0-RC7"
+  viash_version: "0.9.0"
   source: "src"
   target: "target"
   config_mods:
   - ".requirements.commands := ['ps']\n"
   - ".engines += { type: \"native\" }"
   - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
-  - ".engines[.type == 'docker'].target_tag := 'v0.2'"
+  - ".engines[.type == 'docker'].target_tag := '0.2.0'"
   keywords:
   - "bioinformatics"
   - "modules"

target/executable/star/star_align_reads/star_align_reads

@@ -1,10 +1,10 @@
 #!/usr/bin/env bash
 
-# star_align_reads v0.2
+# star_align_reads 0.2.0
 # 
-# This wrapper script is auto-generated by viash 0.9.0-RC7 and is thus a
-# derivative work thereof. This software comes with ABSOLUTELY NO WARRANTY from
-# Data Intuitive.
+# This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative
+# work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
+# Intuitive.
 # 
 # The component may contain files which fall under a different license. The
 # authors of this component should specify the license in the header of such
@@ -175,7 +175,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "star_align_reads v0.2"
+  echo "star_align_reads 0.2.0"
   echo ""
   echo "Aligns reads to a reference genome using STAR."
   echo ""
@@ -1920,10 +1920,10 @@ RUN STAR --version | sed 's#\(.*\)#star: "\1"#' > /var/software_versions.txt
 
 LABEL org.opencontainers.image.authors="Angela Oliveira Pisco, Robrecht Cannoodt"
 LABEL org.opencontainers.image.description="Companion container for running component star star_align_reads"
-LABEL org.opencontainers.image.created="2024-09-12T12:36:19Z"
+LABEL org.opencontainers.image.created="2024-09-12T13:23:20Z"
 LABEL org.opencontainers.image.source="https://github.com/alexdobin/STAR"
-LABEL org.opencontainers.image.revision="f22ab0eab58dcd6bff89d8d73fe951953ff1260f"
-LABEL org.opencontainers.image.version="v0.2"
+LABEL org.opencontainers.image.revision="5526b3e939030daea80595fa98387b469329bbfa"
+LABEL org.opencontainers.image.version="0.2.0"
 
 VIASHDOCKER
   fi
@@ -2059,7 +2059,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "star_align_reads v0.2"
+            echo "star_align_reads 0.2.0"
             exit
             ;;
         --run_rng_seed)
@@ -4542,7 +4542,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then
 
   # determine docker image id
   if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then
-    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/biobox/star/star_align_reads:v0.2'
+    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/biobox/star/star_align_reads:0.2.0'
   fi
 
   # print dockerfile

target/executable/star/star_genome_generate/.config.vsh.yaml

@@ -1,6 +1,6 @@
 name: "star_genome_generate"
 namespace: "star"
-version: "v0.2"
+version: "0.2.0"
 authors:
 - name: "Sai Nirmayi Yasa"
   roles:
@@ -305,7 +305,7 @@ engines:
   id: "docker"
   image: "ubuntu:22.04"
   target_registry: "images.viash-hub.com"
-  target_tag: "v0.2"
+  target_tag: "0.2.0"
   namespace_separator: "/"
   setup:
   - type: "docker"
@@ -332,22 +332,22 @@ build_info:
   engine: "docker|native"
   output: "target/executable/star/star_genome_generate"
   executable: "target/executable/star/star_genome_generate/star_genome_generate"
-  viash_version: "0.9.0-RC7"
-  git_commit: "f22ab0eab58dcd6bff89d8d73fe951953ff1260f"
+  viash_version: "0.9.0"
+  git_commit: "5526b3e939030daea80595fa98387b469329bbfa"
   git_remote: "https://github.com/viash-hub/biobox"
 package_config:
   name: "biobox"
-  version: "v0.2"
+  version: "0.2.0"
   description: "A collection of bioinformatics tools for working with sequence data.\n"
   info: null
-  viash_version: "0.9.0-RC7"
+  viash_version: "0.9.0"
   source: "src"
   target: "target"
   config_mods:
   - ".requirements.commands := ['ps']\n"
   - ".engines += { type: \"native\" }"
   - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
-  - ".engines[.type == 'docker'].target_tag := 'v0.2'"
+  - ".engines[.type == 'docker'].target_tag := '0.2.0'"
   keywords:
   - "bioinformatics"
   - "modules"

target/executable/star/star_genome_generate/star_genome_generate

@@ -1,10 +1,10 @@
 #!/usr/bin/env bash
 
-# star_genome_generate v0.2
+# star_genome_generate 0.2.0
 # 
-# This wrapper script is auto-generated by viash 0.9.0-RC7 and is thus a
-# derivative work thereof. This software comes with ABSOLUTELY NO WARRANTY from
-# Data Intuitive.
+# This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative
+# work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
+# Intuitive.
 # 
 # The component may contain files which fall under a different license. The
 # authors of this component should specify the license in the header of such
@@ -174,7 +174,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "star_genome_generate v0.2"
+  echo "star_genome_generate 0.2.0"
   echo ""
   echo "Create index for STAR"
   echo ""
@@ -577,10 +577,10 @@ RUN STAR --version | sed 's#\(.*\)#star: "\1"#' > /var/software_versions.txt
 
 LABEL org.opencontainers.image.authors="Sai Nirmayi Yasa"
 LABEL org.opencontainers.image.description="Companion container for running component star star_genome_generate"
-LABEL org.opencontainers.image.created="2024-09-12T12:36:19Z"
+LABEL org.opencontainers.image.created="2024-09-12T13:23:20Z"
 LABEL org.opencontainers.image.source="https://github.com/alexdobin/STAR"
-LABEL org.opencontainers.image.revision="f22ab0eab58dcd6bff89d8d73fe951953ff1260f"
-LABEL org.opencontainers.image.version="v0.2"
+LABEL org.opencontainers.image.revision="5526b3e939030daea80595fa98387b469329bbfa"
+LABEL org.opencontainers.image.version="0.2.0"
 
 VIASHDOCKER
   fi
@@ -716,7 +716,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "star_genome_generate v0.2"
+            echo "star_genome_generate 0.2.0"
             exit
             ;;
         --genome_fasta_files)
@@ -1012,7 +1012,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then
 
   # determine docker image id
   if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then
-    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/biobox/star/star_genome_generate:v0.2'
+    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/biobox/star/star_genome_generate:0.2.0'
   fi
 
   # print dockerfile

target/executable/umi_tools/umi_tools_dedup/.config.vsh.yaml

@@ -1,6 +1,6 @@
 name: "umi_tools_dedup"
 namespace: "umi_tools"
-version: "v0.2"
+version: "0.2.0"
 authors:
 - name: "Emma Rousseau"
   roles:
@@ -594,7 +594,7 @@ engines:
   id: "docker"
   image: "quay.io/biocontainers/umi_tools:1.1.5--py39hf95cd2a_1"
   target_registry: "images.viash-hub.com"
-  target_tag: "v0.2"
+  target_tag: "0.2.0"
   namespace_separator: "/"
   setup:
   - type: "docker"
@@ -610,22 +610,22 @@ build_info:
   engine: "docker|native"
   output: "target/executable/umi_tools/umi_tools_dedup"
   executable: "target/executable/umi_tools/umi_tools_dedup/umi_tools_dedup"
-  viash_version: "0.9.0-RC7"
-  git_commit: "f22ab0eab58dcd6bff89d8d73fe951953ff1260f"
+  viash_version: "0.9.0"
+  git_commit: "5526b3e939030daea80595fa98387b469329bbfa"
   git_remote: "https://github.com/viash-hub/biobox"
 package_config:
   name: "biobox"
-  version: "v0.2"
+  version: "0.2.0"
   description: "A collection of bioinformatics tools for working with sequence data.\n"
   info: null
-  viash_version: "0.9.0-RC7"
+  viash_version: "0.9.0"
   source: "src"
   target: "target"
   config_mods:
   - ".requirements.commands := ['ps']\n"
   - ".engines += { type: \"native\" }"
   - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
-  - ".engines[.type == 'docker'].target_tag := 'v0.2'"
+  - ".engines[.type == 'docker'].target_tag := '0.2.0'"
   keywords:
   - "bioinformatics"
   - "modules"

target/executable/umi_tools/umi_tools_dedup/umi_tools_dedup

@@ -1,10 +1,10 @@
 #!/usr/bin/env bash
 
-# umi_tools_dedup v0.2
+# umi_tools_dedup 0.2.0
 # 
-# This wrapper script is auto-generated by viash 0.9.0-RC7 and is thus a
-# derivative work thereof. This software comes with ABSOLUTELY NO WARRANTY from
-# Data Intuitive.
+# This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative
+# work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
+# Intuitive.
 # 
 # The component may contain files which fall under a different license. The
 # authors of this component should specify the license in the header of such
@@ -174,7 +174,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "umi_tools_dedup v0.2"
+  echo "umi_tools_dedup 0.2.0"
   echo ""
   echo "Deduplicate reads based on the mapping co-ordinate and the UMI attached to the"
   echo "read."
@@ -770,10 +770,10 @@ RUN umi_tools -v | sed 's/ version//g' > /var/software_versions.txt
 
 LABEL org.opencontainers.image.authors="Emma Rousseau"
 LABEL org.opencontainers.image.description="Companion container for running component umi_tools umi_tools_dedup"
-LABEL org.opencontainers.image.created="2024-09-12T12:36:17Z"
+LABEL org.opencontainers.image.created="2024-09-12T13:23:18Z"
 LABEL org.opencontainers.image.source="https://github.com/CGATOxford/UMI-tools"
-LABEL org.opencontainers.image.revision="f22ab0eab58dcd6bff89d8d73fe951953ff1260f"
-LABEL org.opencontainers.image.version="v0.2"
+LABEL org.opencontainers.image.revision="5526b3e939030daea80595fa98387b469329bbfa"
+LABEL org.opencontainers.image.version="0.2.0"
 
 VIASHDOCKER
   fi
@@ -909,7 +909,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "umi_tools_dedup v0.2"
+            echo "umi_tools_dedup 0.2.0"
             exit
             ;;
         --input)
@@ -1475,7 +1475,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then
 
   # determine docker image id
   if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then
-    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/biobox/umi_tools/umi_tools_dedup:v0.2'
+    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/biobox/umi_tools/umi_tools_dedup:0.2.0'
   fi
 
   # print dockerfile