Build branch v0.2 with version 0.2.0 (5526b3e)

Build pipeline: viash-hub.biobox.v0.2-zzqh5 Source commit: 5526b3e939 Source message: Release v0.2.0
2024-09-12 13:38:40 +00:00
parent 884fc9474e
commit cdb68529f2
258 changed files with 2759 additions and 2197 deletions
--- a/target/executable/lofreq/lofreq_call/.config.vsh.yaml
+++ b/target/executable/lofreq/lofreq_call/.config.vsh.yaml
@@ -1,6 +1,6 @@
 name: "lofreq_call"
 namespace: "lofreq"
-version: "v0.2"
+version: "0.2.0"
 authors:
 - name: "Kai Waldrant"
  roles:
@@ -489,7 +489,7 @@ engines:
  id: "docker"
  image: "quay.io/biocontainers/lofreq:2.1.5--py38h794fc9e_10"
  target_registry: "images.viash-hub.com"
-  target_tag: "v0.2"
+  target_tag: "0.2.0"
  namespace_separator: "/"
  setup:
  - type: "docker"
@@ -506,22 +506,22 @@ build_info:
  engine: "docker|native"
  output: "target/executable/lofreq/lofreq_call"
  executable: "target/executable/lofreq/lofreq_call/lofreq_call"
-  viash_version: "0.9.0-RC7"
-  git_commit: "f22ab0eab58dcd6bff89d8d73fe951953ff1260f"
+  viash_version: "0.9.0"
+  git_commit: "5526b3e939030daea80595fa98387b469329bbfa"
  git_remote: "https://github.com/viash-hub/biobox"
 package_config:
  name: "biobox"
-  version: "v0.2"
+  version: "0.2.0"
  description: "A collection of bioinformatics tools for working with sequence data.\n"
  info: null
-  viash_version: "0.9.0-RC7"
+  viash_version: "0.9.0"
  source: "src"
  target: "target"
  config_mods:
  - ".requirements.commands := ['ps']\n"
  - ".engines += { type: \"native\" }"
  - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
-  - ".engines[.type == 'docker'].target_tag := 'v0.2'"
+  - ".engines[.type == 'docker'].target_tag := '0.2.0'"
  keywords:
  - "bioinformatics"
  - "modules"
--- a/target/executable/lofreq/lofreq_call/lofreq_call
+++ b/target/executable/lofreq/lofreq_call/lofreq_call
@@ -1,10 +1,10 @@
 #!/usr/bin/env bash

-# lofreq_call v0.2
+# lofreq_call 0.2.0
 # 
-# This wrapper script is auto-generated by viash 0.9.0-RC7 and is thus a
-# derivative work thereof. This software comes with ABSOLUTELY NO WARRANTY from
-# Data Intuitive.
+# This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative
+# work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
+# Intuitive.
 # 
 # The component may contain files which fall under a different license. The
 # authors of this component should specify the license in the header of such
@@ -174,7 +174,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"

 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "lofreq_call v0.2"
+  echo "lofreq_call 0.2.0"
  echo ""
  echo "Call variants from a BAM file."
  echo ""
@@ -656,10 +656,10 @@ echo "lofreq: $version" > /var/software_versions.txt

 LABEL org.opencontainers.image.authors="Kai Waldrant"
 LABEL org.opencontainers.image.description="Companion container for running component lofreq lofreq_call"
-LABEL org.opencontainers.image.created="2024-09-12T12:36:18Z"
+LABEL org.opencontainers.image.created="2024-09-12T13:23:19Z"
 LABEL org.opencontainers.image.source="https://github.com/viash-hub/biobox"
-LABEL org.opencontainers.image.revision="f22ab0eab58dcd6bff89d8d73fe951953ff1260f"
-LABEL org.opencontainers.image.version="v0.2"
+LABEL org.opencontainers.image.revision="5526b3e939030daea80595fa98387b469329bbfa"
+LABEL org.opencontainers.image.version="0.2.0"

 VIASHDOCKER
  fi
@@ -795,7 +795,7 @@ while [[ $# -gt 0 ]]; do
            shift 1
            ;;
        --version)
-            echo "lofreq_call v0.2"
+            echo "lofreq_call 0.2.0"
            exit
            ;;
        --input)
@@ -1319,7 +1319,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then

  # determine docker image id
  if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then
-    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/biobox/lofreq/lofreq_call:v0.2'
+    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/biobox/lofreq/lofreq_call:0.2.0'
  fi

  # print dockerfile
--- a/target/executable/lofreq/lofreq_indelqual/.config.vsh.yaml
+++ b/target/executable/lofreq/lofreq_indelqual/.config.vsh.yaml
@@ -1,6 +1,6 @@
 name: "lofreq_indelqual"
 namespace: "lofreq"
-version: "v0.2"
+version: "0.2.0"
 authors:
 - name: "Kai Waldrant"
  roles:
@@ -197,7 +197,7 @@ engines:
  id: "docker"
  image: "quay.io/biocontainers/lofreq:2.1.5--py38h794fc9e_10"
  target_registry: "images.viash-hub.com"
-  target_tag: "v0.2"
+  target_tag: "0.2.0"
  namespace_separator: "/"
  setup:
  - type: "docker"
@@ -214,22 +214,22 @@ build_info:
  engine: "docker|native"
  output: "target/executable/lofreq/lofreq_indelqual"
  executable: "target/executable/lofreq/lofreq_indelqual/lofreq_indelqual"
-  viash_version: "0.9.0-RC7"
-  git_commit: "f22ab0eab58dcd6bff89d8d73fe951953ff1260f"
+  viash_version: "0.9.0"
+  git_commit: "5526b3e939030daea80595fa98387b469329bbfa"
  git_remote: "https://github.com/viash-hub/biobox"
 package_config:
  name: "biobox"
-  version: "v0.2"
+  version: "0.2.0"
  description: "A collection of bioinformatics tools for working with sequence data.\n"
  info: null
-  viash_version: "0.9.0-RC7"
+  viash_version: "0.9.0"
  source: "src"
  target: "target"
  config_mods:
  - ".requirements.commands := ['ps']\n"
  - ".engines += { type: \"native\" }"
  - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
-  - ".engines[.type == 'docker'].target_tag := 'v0.2'"
+  - ".engines[.type == 'docker'].target_tag := '0.2.0'"
  keywords:
  - "bioinformatics"
  - "modules"
--- a/target/executable/lofreq/lofreq_indelqual/lofreq_indelqual
+++ b/target/executable/lofreq/lofreq_indelqual/lofreq_indelqual
@@ -1,10 +1,10 @@
 #!/usr/bin/env bash

-# lofreq_indelqual v0.2
+# lofreq_indelqual 0.2.0
 # 
-# This wrapper script is auto-generated by viash 0.9.0-RC7 and is thus a
-# derivative work thereof. This software comes with ABSOLUTELY NO WARRANTY from
-# Data Intuitive.
+# This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative
+# work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
+# Intuitive.
 # 
 # The component may contain files which fall under a different license. The
 # authors of this component should specify the license in the header of such
@@ -174,7 +174,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"

 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "lofreq_indelqual v0.2"
+  echo "lofreq_indelqual 0.2.0"
  echo ""
  echo "Insert indel qualities into BAM file (required for indel predictions)."
  echo ""
@@ -501,10 +501,10 @@ echo "lofreq: $version" > /var/software_versions.txt

 LABEL org.opencontainers.image.authors="Kai Waldrant"
 LABEL org.opencontainers.image.description="Companion container for running component lofreq lofreq_indelqual"
-LABEL org.opencontainers.image.created="2024-09-12T12:36:18Z"
+LABEL org.opencontainers.image.created="2024-09-12T13:23:19Z"
 LABEL org.opencontainers.image.source="https://github.com/viash-hub/biobox"
-LABEL org.opencontainers.image.revision="f22ab0eab58dcd6bff89d8d73fe951953ff1260f"
-LABEL org.opencontainers.image.version="v0.2"
+LABEL org.opencontainers.image.revision="5526b3e939030daea80595fa98387b469329bbfa"
+LABEL org.opencontainers.image.version="0.2.0"

 VIASHDOCKER
  fi
@@ -640,7 +640,7 @@ while [[ $# -gt 0 ]]; do
            shift 1
            ;;
        --version)
-            echo "lofreq_indelqual v0.2"
+            echo "lofreq_indelqual 0.2.0"
            exit
            ;;
        --input)
@@ -803,7 +803,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then

  # determine docker image id
  if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then
-    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/biobox/lofreq/lofreq_indelqual:v0.2'
+    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/biobox/lofreq/lofreq_indelqual:0.2.0'
  fi

  # print dockerfile