Build branch v0.2 with version 0.2.0 (5526b3e)
Build pipeline: viash-hub.biobox.v0.2-zzqh5
Source commit: 5526b3e939
Source message: Release v0.2.0
This commit is contained in:
@@ -1,6 +1,6 @@
|
||||
name: "samtools_view"
|
||||
namespace: "samtools"
|
||||
version: "v0.2"
|
||||
version: "0.2.0"
|
||||
authors:
|
||||
- name: "Emma Rousseau"
|
||||
roles:
|
||||
@@ -647,7 +647,7 @@ engines:
|
||||
id: "docker"
|
||||
image: "quay.io/biocontainers/samtools:1.19.2--h50ea8bc_1"
|
||||
target_registry: "images.viash-hub.com"
|
||||
target_tag: "v0.2"
|
||||
target_tag: "0.2.0"
|
||||
namespace_separator: "/"
|
||||
setup:
|
||||
- type: "docker"
|
||||
@@ -664,22 +664,22 @@ build_info:
|
||||
engine: "docker|native"
|
||||
output: "target/executable/samtools/samtools_view"
|
||||
executable: "target/executable/samtools/samtools_view/samtools_view"
|
||||
viash_version: "0.9.0-RC7"
|
||||
git_commit: "f22ab0eab58dcd6bff89d8d73fe951953ff1260f"
|
||||
viash_version: "0.9.0"
|
||||
git_commit: "5526b3e939030daea80595fa98387b469329bbfa"
|
||||
git_remote: "https://github.com/viash-hub/biobox"
|
||||
package_config:
|
||||
name: "biobox"
|
||||
version: "v0.2"
|
||||
version: "0.2.0"
|
||||
description: "A collection of bioinformatics tools for working with sequence data.\n"
|
||||
info: null
|
||||
viash_version: "0.9.0-RC7"
|
||||
viash_version: "0.9.0"
|
||||
source: "src"
|
||||
target: "target"
|
||||
config_mods:
|
||||
- ".requirements.commands := ['ps']\n"
|
||||
- ".engines += { type: \"native\" }"
|
||||
- ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
|
||||
- ".engines[.type == 'docker'].target_tag := 'v0.2'"
|
||||
- ".engines[.type == 'docker'].target_tag := '0.2.0'"
|
||||
keywords:
|
||||
- "bioinformatics"
|
||||
- "modules"
|
||||
|
||||
@@ -1,10 +1,10 @@
|
||||
#!/usr/bin/env bash
|
||||
|
||||
# samtools_view v0.2
|
||||
# samtools_view 0.2.0
|
||||
#
|
||||
# This wrapper script is auto-generated by viash 0.9.0-RC7 and is thus a
|
||||
# derivative work thereof. This software comes with ABSOLUTELY NO WARRANTY from
|
||||
# Data Intuitive.
|
||||
# This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative
|
||||
# work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
|
||||
# Intuitive.
|
||||
#
|
||||
# The component may contain files which fall under a different license. The
|
||||
# authors of this component should specify the license in the header of such
|
||||
@@ -174,7 +174,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
|
||||
|
||||
# ViashHelp: Display helpful explanation about this executable
|
||||
function ViashHelp {
|
||||
echo "samtools_view v0.2"
|
||||
echo "samtools_view 0.2.0"
|
||||
echo ""
|
||||
echo "Views and converts SAM/BAM/CRAM files."
|
||||
echo ""
|
||||
@@ -825,10 +825,10 @@ sed 's#Using ##;s# \([0-9\.]*\)$#: \1#' > /var/software_versions.txt
|
||||
|
||||
LABEL org.opencontainers.image.authors="Emma Rousseau"
|
||||
LABEL org.opencontainers.image.description="Companion container for running component samtools samtools_view"
|
||||
LABEL org.opencontainers.image.created="2024-09-12T12:36:13Z"
|
||||
LABEL org.opencontainers.image.created="2024-09-12T13:23:14Z"
|
||||
LABEL org.opencontainers.image.source="https://github.com/samtools/samtools"
|
||||
LABEL org.opencontainers.image.revision="f22ab0eab58dcd6bff89d8d73fe951953ff1260f"
|
||||
LABEL org.opencontainers.image.version="v0.2"
|
||||
LABEL org.opencontainers.image.revision="5526b3e939030daea80595fa98387b469329bbfa"
|
||||
LABEL org.opencontainers.image.version="0.2.0"
|
||||
|
||||
VIASHDOCKER
|
||||
fi
|
||||
@@ -964,7 +964,7 @@ while [[ $# -gt 0 ]]; do
|
||||
shift 1
|
||||
;;
|
||||
--version)
|
||||
echo "samtools_view v0.2"
|
||||
echo "samtools_view 0.2.0"
|
||||
exit
|
||||
;;
|
||||
--input)
|
||||
@@ -1636,7 +1636,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then
|
||||
|
||||
# determine docker image id
|
||||
if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then
|
||||
VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/biobox/samtools/samtools_view:v0.2'
|
||||
VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/biobox/samtools/samtools_view:0.2.0'
|
||||
fi
|
||||
|
||||
# print dockerfile
|
||||
|
||||
Reference in New Issue
Block a user