Build branch v0.2 with version v0.2.0 (7e53021)
Build pipeline: viash-hub.biobox.v0.2-tj6l9
Source commit: 7e53021884
Source message: Fix version number and re-release v0.2.0
This commit is contained in:
@@ -1,6 +1,6 @@
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name: "bedtools_getfasta"
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namespace: "bedtools"
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version: "0.2.0"
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version: "v0.2.0"
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authors:
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- name: "Dries Schaumont"
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roles:
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@@ -209,7 +209,7 @@ engines:
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id: "docker"
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image: "debian:stable-slim"
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target_registry: "images.viash-hub.com"
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target_tag: "0.2.0"
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target_tag: "v0.2.0"
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namespace_separator: "/"
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setup:
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- type: "apt"
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@@ -232,11 +232,11 @@ build_info:
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output: "target/executable/bedtools/bedtools_getfasta"
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executable: "target/executable/bedtools/bedtools_getfasta/bedtools_getfasta"
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viash_version: "0.9.0"
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git_commit: "5526b3e939030daea80595fa98387b469329bbfa"
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git_remote: "https://github.com/viash-hub/biobox"
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git_commit: "7e530218844c373048bc33de58f021b6460642e5"
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git_remote: "https://x-access-token:ghs_kiUBq39QrAlnG6IaeAcTcXhllzqpOV4LDB3e@github.com/viash-hub/biobox"
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package_config:
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name: "biobox"
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version: "0.2.0"
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version: "v0.2.0"
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description: "A collection of bioinformatics tools for working with sequence data.\n"
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info: null
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viash_version: "0.9.0"
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@@ -246,7 +246,7 @@ package_config:
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- ".requirements.commands := ['ps']\n"
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- ".engines += { type: \"native\" }"
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- ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
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- ".engines[.type == 'docker'].target_tag := '0.2.0'"
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- ".engines[.type == 'docker'].target_tag := 'v0.2.0'"
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keywords:
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- "bioinformatics"
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- "modules"
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@@ -1,6 +1,6 @@
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#!/usr/bin/env bash
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# bedtools_getfasta 0.2.0
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# bedtools_getfasta v0.2.0
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#
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# This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative
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# work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
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@@ -174,7 +174,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
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# ViashHelp: Display helpful explanation about this executable
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function ViashHelp {
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echo "bedtools_getfasta 0.2.0"
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echo "bedtools_getfasta v0.2.0"
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echo ""
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echo "Extract sequences from a FASTA file for each of the intervals defined in a"
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echo "BED/GFF/VCF file."
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@@ -526,10 +526,10 @@ RUN echo "bedtools: \"$(bedtools --version | sed -n 's/^bedtools //p')\"" > /var
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LABEL org.opencontainers.image.authors="Dries Schaumont"
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LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_getfasta"
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LABEL org.opencontainers.image.created="2024-09-12T13:23:11Z"
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LABEL org.opencontainers.image.created="2024-09-13T12:35:06Z"
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LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2"
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LABEL org.opencontainers.image.revision="5526b3e939030daea80595fa98387b469329bbfa"
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LABEL org.opencontainers.image.version="0.2.0"
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LABEL org.opencontainers.image.revision="7e530218844c373048bc33de58f021b6460642e5"
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LABEL org.opencontainers.image.version="v0.2.0"
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VIASHDOCKER
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fi
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@@ -665,7 +665,7 @@ while [[ $# -gt 0 ]]; do
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shift 1
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;;
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--version)
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echo "bedtools_getfasta 0.2.0"
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echo "bedtools_getfasta v0.2.0"
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exit
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;;
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--input_fasta)
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@@ -840,7 +840,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then
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# determine docker image id
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if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then
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VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/biobox/bedtools/bedtools_getfasta:0.2.0'
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VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/biobox/bedtools/bedtools_getfasta:v0.2.0'
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fi
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# print dockerfile
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