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Build branch main with version main (c3ba4a7)

Browse Source 
Build pipeline: viash-hub.biobox.main-n2mwd

Source commit: c3ba4a7849

Source message: Bcftools annotate (#143)

* Initial commit

* Update config.vsh.yaml

* changes in config file

* Update script.sh

* Help File

* Update script.sh

* Update test.sh

* bug fixing and adding tests

* Update test.sh

* Update test.sh

* adding 3rd test

* More tests

* Moreee tests

* Update test.sh

* small changes

* Update CHANGELOG.md

* Update config.vsh.yaml

* bug fixing on config

* Requested changes

---------

Co-authored-by: Jakub Majercik <57993790+jakubmajercik@users.noreply.github.com>
This commit is contained in:
CI
2024-09-10 14:11:21 +00:00
parent 0075a8df93
commit db2f4203b8
231 changed files with 8225 additions and 276 deletions
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2
target/executable/agat/agat_convert_bed2gff/.config.vsh.yaml
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@@ -235,7 +235,7 @@ build_info:
output: "target/executable/agat/agat_convert_bed2gff"
executable: "target/executable/agat/agat_convert_bed2gff/agat_convert_bed2gff"
viash_version: "0.9.0-RC7"
git_commit: "8fe9d66b0c689776846dcb0ecb01a30f3ef1b66b"
git_commit: "c3ba4a78497f7518725bb7d3e213b2a9bcee511e"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

4
target/executable/agat/agat_convert_bed2gff/agat_convert_bed2gff
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@@ -515,9 +515,9 @@ RUN agat --version | sed 's/AGAT\s\(.*\)/agat: "\1"/' > /var/software_versions.t
LABEL org.opencontainers.image.authors="Leïla Paquay"
LABEL org.opencontainers.image.description="Companion container for running component agat agat_convert_bed2gff"
LABEL org.opencontainers.image.created="2024-09-10T13:55:49Z"
LABEL org.opencontainers.image.created="2024-09-10T13:57:09Z"
LABEL org.opencontainers.image.source="https://github.com/NBISweden/AGAT"
LABEL org.opencontainers.image.revision="8fe9d66b0c689776846dcb0ecb01a30f3ef1b66b"
LABEL org.opencontainers.image.revision="c3ba4a78497f7518725bb7d3e213b2a9bcee511e"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

2
target/executable/agat/agat_convert_embl2gff/.config.vsh.yaml
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@@ -225,7 +225,7 @@ build_info:
output: "target/executable/agat/agat_convert_embl2gff"
executable: "target/executable/agat/agat_convert_embl2gff/agat_convert_embl2gff"
viash_version: "0.9.0-RC7"
git_commit: "8fe9d66b0c689776846dcb0ecb01a30f3ef1b66b"
git_commit: "c3ba4a78497f7518725bb7d3e213b2a9bcee511e"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

4
target/executable/agat/agat_convert_embl2gff/agat_convert_embl2gff
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@@ -505,9 +505,9 @@ RUN agat --version | sed 's/AGAT\s\(.*\)/agat: "\1"/' > /var/software_versions.t
LABEL org.opencontainers.image.authors="Leïla Paquay"
LABEL org.opencontainers.image.description="Companion container for running component agat agat_convert_embl2gff"
LABEL org.opencontainers.image.created="2024-09-10T13:55:49Z"
LABEL org.opencontainers.image.created="2024-09-10T13:57:09Z"
LABEL org.opencontainers.image.source="https://github.com/NBISweden/AGAT"
LABEL org.opencontainers.image.revision="8fe9d66b0c689776846dcb0ecb01a30f3ef1b66b"
LABEL org.opencontainers.image.revision="c3ba4a78497f7518725bb7d3e213b2a9bcee511e"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

2
target/executable/agat/agat_convert_sp_gff2gtf/.config.vsh.yaml
View File

@@ -228,7 +228,7 @@ build_info:
output: "target/executable/agat/agat_convert_sp_gff2gtf"
executable: "target/executable/agat/agat_convert_sp_gff2gtf/agat_convert_sp_gff2gtf"
viash_version: "0.9.0-RC7"
git_commit: "8fe9d66b0c689776846dcb0ecb01a30f3ef1b66b"
git_commit: "c3ba4a78497f7518725bb7d3e213b2a9bcee511e"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

4
target/executable/agat/agat_convert_sp_gff2gtf/agat_convert_sp_gff2gtf
View File

@@ -519,9 +519,9 @@ RUN agat --version | sed 's/AGAT\s\(.*\)/agat: "\1"/' > /var/software_versions.t
LABEL org.opencontainers.image.authors="Leïla Paquay"
LABEL org.opencontainers.image.description="Companion container for running component agat agat_convert_sp_gff2gtf"
LABEL org.opencontainers.image.created="2024-09-10T13:55:50Z"
LABEL org.opencontainers.image.created="2024-09-10T13:57:09Z"
LABEL org.opencontainers.image.source="https://github.com/NBISweden/AGAT"
LABEL org.opencontainers.image.revision="8fe9d66b0c689776846dcb0ecb01a30f3ef1b66b"
LABEL org.opencontainers.image.revision="c3ba4a78497f7518725bb7d3e213b2a9bcee511e"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

2
target/executable/agat/agat_convert_sp_gff2tsv/.config.vsh.yaml
View File

@@ -188,7 +188,7 @@ build_info:
output: "target/executable/agat/agat_convert_sp_gff2tsv"
executable: "target/executable/agat/agat_convert_sp_gff2tsv/agat_convert_sp_gff2tsv"
viash_version: "0.9.0-RC7"
git_commit: "8fe9d66b0c689776846dcb0ecb01a30f3ef1b66b"
git_commit: "c3ba4a78497f7518725bb7d3e213b2a9bcee511e"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

4
target/executable/agat/agat_convert_sp_gff2tsv/agat_convert_sp_gff2tsv
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@@ -484,9 +484,9 @@ RUN agat --version | sed 's/AGAT\s\(.*\)/agat: "\1"/' > /var/software_versions.t
LABEL org.opencontainers.image.authors="Leïla Paquay"
LABEL org.opencontainers.image.description="Companion container for running component agat agat_convert_sp_gff2tsv"
LABEL org.opencontainers.image.created="2024-09-10T13:55:49Z"
LABEL org.opencontainers.image.created="2024-09-10T13:57:08Z"
LABEL org.opencontainers.image.source="https://github.com/NBISweden/AGAT"
LABEL org.opencontainers.image.revision="8fe9d66b0c689776846dcb0ecb01a30f3ef1b66b"
LABEL org.opencontainers.image.revision="c3ba4a78497f7518725bb7d3e213b2a9bcee511e"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

2
target/executable/agat/agat_convert_sp_gxf2gxf/.config.vsh.yaml
View File

@@ -195,7 +195,7 @@ build_info:
output: "target/executable/agat/agat_convert_sp_gxf2gxf"
executable: "target/executable/agat/agat_convert_sp_gxf2gxf/agat_convert_sp_gxf2gxf"
viash_version: "0.9.0-RC7"
git_commit: "8fe9d66b0c689776846dcb0ecb01a30f3ef1b66b"
git_commit: "c3ba4a78497f7518725bb7d3e213b2a9bcee511e"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

4
target/executable/agat/agat_convert_sp_gxf2gxf/agat_convert_sp_gxf2gxf
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@@ -493,9 +493,9 @@ RUN agat --version | sed 's/AGAT\s\(.*\)/agat: "\1"/' > /var/software_versions.t
LABEL org.opencontainers.image.authors="Leïla Paquay"
LABEL org.opencontainers.image.description="Companion container for running component agat agat_convert_sp_gxf2gxf"
LABEL org.opencontainers.image.created="2024-09-10T13:55:48Z"
LABEL org.opencontainers.image.created="2024-09-10T13:57:08Z"
LABEL org.opencontainers.image.source="https://github.com/NBISweden/AGAT"
LABEL org.opencontainers.image.revision="8fe9d66b0c689776846dcb0ecb01a30f3ef1b66b"
LABEL org.opencontainers.image.revision="c3ba4a78497f7518725bb7d3e213b2a9bcee511e"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER