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Build branch main with version main (1d17ce0)

Browse Source 
Build pipeline: viash-hub.biobox.main-79vlw

Source commit: 1d17ce01e2

Source message: Add cellranger_mkref (#164)

* initial commit dedup

* Revert "initial commit dedup"

This reverts commit 38f586bec0ac9e4312b016e29c3aa0bd53f292b2.

* mkref component - config, test data, scripts, changelog

* Small updates

* Update CHANGELOG

* Update src/cellranger/cellranger_mkref/script.sh

---------

Co-authored-by: DriesSchaumont <5946712+DriesSchaumont@users.noreply.github.com>
Co-authored-by: Robrecht Cannoodt <rcannood@gmail.com>
This commit is contained in:
CI
2024-11-08 10:06:06 +00:00
parent b77e39f22a
commit dffc02813f
326 changed files with 6608 additions and 858 deletions
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6
target/executable/bcftools/bcftools_annotate/.config.vsh.yaml
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@@ -469,9 +469,9 @@ build_info:
output: "target/executable/bcftools/bcftools_annotate"
executable: "target/executable/bcftools/bcftools_annotate/bcftools_annotate"
viash_version: "0.9.0"
git_commit: "b3fcd52f2039056907160baf85fd84ac9c5b96be"
git_remote: "https://x-access-token:ghs_ZC0rzL9dZoRAoQQFaSrx6tuZSkKgI83FPAmh@github.com/viash-hub/biobox"
git_tag: "v0.2.0-23-gb3fcd52"
git_commit: "1d17ce01e25569c8e898b8160af1480ad22fc986"
git_remote: "https://x-access-token:ghs_6YTGQkPF5IMZyp8fS3YMcIBjhXPmep1DKcNC@github.com/viash-hub/biobox"
git_tag: "v0.2.0-24-g1d17ce0"
package_config:
name: "biobox"
version: "main"

4
target/executable/bcftools/bcftools_annotate/bcftools_annotate
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@@ -650,9 +650,9 @@ RUN echo "bcftools: \"$(bcftools --version | grep 'bcftools' | sed -n 's/^bcftoo
LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo"
LABEL org.opencontainers.image.description="Companion container for running component bcftools bcftools_annotate"
LABEL org.opencontainers.image.created="2024-11-08T09:17:41Z"
LABEL org.opencontainers.image.created="2024-11-08T09:45:08Z"
LABEL org.opencontainers.image.source="https://github.com/samtools/bcftools"
LABEL org.opencontainers.image.revision="b3fcd52f2039056907160baf85fd84ac9c5b96be"
LABEL org.opencontainers.image.revision="1d17ce01e25569c8e898b8160af1480ad22fc986"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

6
target/executable/bcftools/bcftools_concat/.config.vsh.yaml
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@@ -335,9 +335,9 @@ build_info:
output: "target/executable/bcftools/bcftools_concat"
executable: "target/executable/bcftools/bcftools_concat/bcftools_concat"
viash_version: "0.9.0"
git_commit: "b3fcd52f2039056907160baf85fd84ac9c5b96be"
git_remote: "https://x-access-token:ghs_ZC0rzL9dZoRAoQQFaSrx6tuZSkKgI83FPAmh@github.com/viash-hub/biobox"
git_tag: "v0.2.0-23-gb3fcd52"
git_commit: "1d17ce01e25569c8e898b8160af1480ad22fc986"
git_remote: "https://x-access-token:ghs_6YTGQkPF5IMZyp8fS3YMcIBjhXPmep1DKcNC@github.com/viash-hub/biobox"
git_tag: "v0.2.0-24-g1d17ce0"
package_config:
name: "biobox"
version: "main"

4
target/executable/bcftools/bcftools_concat/bcftools_concat
View File

@@ -566,9 +566,9 @@ RUN echo "bcftools: \"$(bcftools --version | grep 'bcftools' | sed -n 's/^bcftoo
LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo"
LABEL org.opencontainers.image.description="Companion container for running component bcftools bcftools_concat"
LABEL org.opencontainers.image.created="2024-11-08T09:17:40Z"
LABEL org.opencontainers.image.created="2024-11-08T09:45:07Z"
LABEL org.opencontainers.image.source="https://github.com/samtools/bcftools"
LABEL org.opencontainers.image.revision="b3fcd52f2039056907160baf85fd84ac9c5b96be"
LABEL org.opencontainers.image.revision="1d17ce01e25569c8e898b8160af1480ad22fc986"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

6
target/executable/bcftools/bcftools_norm/.config.vsh.yaml
View File

@@ -416,9 +416,9 @@ build_info:
output: "target/executable/bcftools/bcftools_norm"
executable: "target/executable/bcftools/bcftools_norm/bcftools_norm"
viash_version: "0.9.0"
git_commit: "b3fcd52f2039056907160baf85fd84ac9c5b96be"
git_remote: "https://x-access-token:ghs_ZC0rzL9dZoRAoQQFaSrx6tuZSkKgI83FPAmh@github.com/viash-hub/biobox"
git_tag: "v0.2.0-23-gb3fcd52"
git_commit: "1d17ce01e25569c8e898b8160af1480ad22fc986"
git_remote: "https://x-access-token:ghs_6YTGQkPF5IMZyp8fS3YMcIBjhXPmep1DKcNC@github.com/viash-hub/biobox"
git_tag: "v0.2.0-24-g1d17ce0"
package_config:
name: "biobox"
version: "main"

4
target/executable/bcftools/bcftools_norm/bcftools_norm
View File

@@ -589,9 +589,9 @@ RUN echo "bcftools: \"$(bcftools --version | grep 'bcftools' | sed -n 's/^bcftoo
LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo"
LABEL org.opencontainers.image.description="Companion container for running component bcftools bcftools_norm"
LABEL org.opencontainers.image.created="2024-11-08T09:17:41Z"
LABEL org.opencontainers.image.created="2024-11-08T09:45:08Z"
LABEL org.opencontainers.image.source="https://github.com/samtools/bcftools"
LABEL org.opencontainers.image.revision="b3fcd52f2039056907160baf85fd84ac9c5b96be"
LABEL org.opencontainers.image.revision="1d17ce01e25569c8e898b8160af1480ad22fc986"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

6
target/executable/bcftools/bcftools_sort/.config.vsh.yaml
View File

@@ -185,9 +185,9 @@ build_info:
output: "target/executable/bcftools/bcftools_sort"
executable: "target/executable/bcftools/bcftools_sort/bcftools_sort"
viash_version: "0.9.0"
git_commit: "b3fcd52f2039056907160baf85fd84ac9c5b96be"
git_remote: "https://x-access-token:ghs_ZC0rzL9dZoRAoQQFaSrx6tuZSkKgI83FPAmh@github.com/viash-hub/biobox"
git_tag: "v0.2.0-23-gb3fcd52"
git_commit: "1d17ce01e25569c8e898b8160af1480ad22fc986"
git_remote: "https://x-access-token:ghs_6YTGQkPF5IMZyp8fS3YMcIBjhXPmep1DKcNC@github.com/viash-hub/biobox"
git_tag: "v0.2.0-24-g1d17ce0"
package_config:
name: "biobox"
version: "main"

4
target/executable/bcftools/bcftools_sort/bcftools_sort
View File

@@ -483,9 +483,9 @@ RUN echo "bcftools: \"$(bcftools --version | grep 'bcftools' | sed -n 's/^bcftoo
LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo"
LABEL org.opencontainers.image.description="Companion container for running component bcftools bcftools_sort"
LABEL org.opencontainers.image.created="2024-11-08T09:17:40Z"
LABEL org.opencontainers.image.created="2024-11-08T09:45:07Z"
LABEL org.opencontainers.image.source="https://github.com/samtools/bcftools"
LABEL org.opencontainers.image.revision="b3fcd52f2039056907160baf85fd84ac9c5b96be"
LABEL org.opencontainers.image.revision="1d17ce01e25569c8e898b8160af1480ad22fc986"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

6
target/executable/bcftools/bcftools_stats/.config.vsh.yaml
View File

@@ -458,9 +458,9 @@ build_info:
output: "target/executable/bcftools/bcftools_stats"
executable: "target/executable/bcftools/bcftools_stats/bcftools_stats"
viash_version: "0.9.0"
git_commit: "b3fcd52f2039056907160baf85fd84ac9c5b96be"
git_remote: "https://x-access-token:ghs_ZC0rzL9dZoRAoQQFaSrx6tuZSkKgI83FPAmh@github.com/viash-hub/biobox"
git_tag: "v0.2.0-23-gb3fcd52"
git_commit: "1d17ce01e25569c8e898b8160af1480ad22fc986"
git_remote: "https://x-access-token:ghs_6YTGQkPF5IMZyp8fS3YMcIBjhXPmep1DKcNC@github.com/viash-hub/biobox"
git_tag: "v0.2.0-24-g1d17ce0"
package_config:
name: "biobox"
version: "main"

4
target/executable/bcftools/bcftools_stats/bcftools_stats
View File

@@ -626,9 +626,9 @@ RUN echo "bcftools: \"$(bcftools --version | grep 'bcftools' | sed -n 's/^bcftoo
LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo"
LABEL org.opencontainers.image.description="Companion container for running component bcftools bcftools_stats"
LABEL org.opencontainers.image.created="2024-11-08T09:17:41Z"
LABEL org.opencontainers.image.created="2024-11-08T09:45:08Z"
LABEL org.opencontainers.image.source="https://github.com/samtools/bcftools"
LABEL org.opencontainers.image.revision="b3fcd52f2039056907160baf85fd84ac9c5b96be"
LABEL org.opencontainers.image.revision="1d17ce01e25569c8e898b8160af1480ad22fc986"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER