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Build branch main with version main (1d17ce0)

Browse Source 
Build pipeline: viash-hub.biobox.main-79vlw

Source commit: 1d17ce01e2

Source message: Add cellranger_mkref (#164)

* initial commit dedup

* Revert "initial commit dedup"

This reverts commit 38f586bec0ac9e4312b016e29c3aa0bd53f292b2.

* mkref component - config, test data, scripts, changelog

* Small updates

* Update CHANGELOG

* Update src/cellranger/cellranger_mkref/script.sh

---------

Co-authored-by: DriesSchaumont <5946712+DriesSchaumont@users.noreply.github.com>
Co-authored-by: Robrecht Cannoodt <rcannood@gmail.com>
This commit is contained in:
CI
2024-11-08 10:06:06 +00:00
parent b77e39f22a
commit dffc02813f
326 changed files with 6608 additions and 858 deletions
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6
target/executable/rseqc/rseqc_bamstat/.config.vsh.yaml
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@@ -175,9 +175,9 @@ build_info:
output: "target/executable/rseqc/rseqc_bamstat"
executable: "target/executable/rseqc/rseqc_bamstat/rseqc_bamstat"
viash_version: "0.9.0"
git_commit: "b3fcd52f2039056907160baf85fd84ac9c5b96be"
git_remote: "https://x-access-token:ghs_ZC0rzL9dZoRAoQQFaSrx6tuZSkKgI83FPAmh@github.com/viash-hub/biobox"
git_tag: "v0.2.0-23-gb3fcd52"
git_commit: "1d17ce01e25569c8e898b8160af1480ad22fc986"
git_remote: "https://x-access-token:ghs_6YTGQkPF5IMZyp8fS3YMcIBjhXPmep1DKcNC@github.com/viash-hub/biobox"
git_tag: "v0.2.0-24-g1d17ce0"
package_config:
name: "biobox"
version: "main"

4
target/executable/rseqc/rseqc_bamstat/rseqc_bamstat
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@@ -477,9 +477,9 @@ RUN echo "RSeQC bam_stat.py: $(bam_stat.py --version | cut -d' ' -f2-)" > /var/s
LABEL org.opencontainers.image.authors="Emma Rousseau"
LABEL org.opencontainers.image.description="Companion container for running component rseqc rseqc_bamstat"
LABEL org.opencontainers.image.created="2024-11-08T09:17:37Z"
LABEL org.opencontainers.image.created="2024-11-08T09:45:04Z"
LABEL org.opencontainers.image.source="https://github.com/MonashBioinformaticsPlatform/RSeQC"
LABEL org.opencontainers.image.revision="b3fcd52f2039056907160baf85fd84ac9c5b96be"
LABEL org.opencontainers.image.revision="1d17ce01e25569c8e898b8160af1480ad22fc986"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

6
target/executable/rseqc/rseqc_inferexperiment/.config.vsh.yaml
View File

@@ -201,9 +201,9 @@ build_info:
output: "target/executable/rseqc/rseqc_inferexperiment"
executable: "target/executable/rseqc/rseqc_inferexperiment/rseqc_inferexperiment"
viash_version: "0.9.0"
git_commit: "b3fcd52f2039056907160baf85fd84ac9c5b96be"
git_remote: "https://x-access-token:ghs_ZC0rzL9dZoRAoQQFaSrx6tuZSkKgI83FPAmh@github.com/viash-hub/biobox"
git_tag: "v0.2.0-23-gb3fcd52"
git_commit: "1d17ce01e25569c8e898b8160af1480ad22fc986"
git_remote: "https://x-access-token:ghs_6YTGQkPF5IMZyp8fS3YMcIBjhXPmep1DKcNC@github.com/viash-hub/biobox"
git_tag: "v0.2.0-24-g1d17ce0"
package_config:
name: "biobox"
version: "main"

4
target/executable/rseqc/rseqc_inferexperiment/rseqc_inferexperiment
View File

@@ -488,9 +488,9 @@ RUN echo "RSeQC - infer_experiment.py: $(infer_experiment.py --version | cut -d'
LABEL org.opencontainers.image.authors="Emma Rousseau"
LABEL org.opencontainers.image.description="Companion container for running component rseqc rseqc_inferexperiment"
LABEL org.opencontainers.image.created="2024-11-08T09:17:37Z"
LABEL org.opencontainers.image.created="2024-11-08T09:45:04Z"
LABEL org.opencontainers.image.source="https://github.com/MonashBioinformaticsPlatform/RSeQC"
LABEL org.opencontainers.image.revision="b3fcd52f2039056907160baf85fd84ac9c5b96be"
LABEL org.opencontainers.image.revision="1d17ce01e25569c8e898b8160af1480ad22fc986"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

6
target/executable/rseqc/rseqc_inner_distance/.config.vsh.yaml
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@@ -294,9 +294,9 @@ build_info:
output: "target/executable/rseqc/rseqc_inner_distance"
executable: "target/executable/rseqc/rseqc_inner_distance/rseqc_inner_distance"
viash_version: "0.9.0"
git_commit: "b3fcd52f2039056907160baf85fd84ac9c5b96be"
git_remote: "https://x-access-token:ghs_ZC0rzL9dZoRAoQQFaSrx6tuZSkKgI83FPAmh@github.com/viash-hub/biobox"
git_tag: "v0.2.0-23-gb3fcd52"
git_commit: "1d17ce01e25569c8e898b8160af1480ad22fc986"
git_remote: "https://x-access-token:ghs_6YTGQkPF5IMZyp8fS3YMcIBjhXPmep1DKcNC@github.com/viash-hub/biobox"
git_tag: "v0.2.0-24-g1d17ce0"
package_config:
name: "biobox"
version: "main"

4
target/executable/rseqc/rseqc_inner_distance/rseqc_inner_distance
View File

@@ -532,9 +532,9 @@ RUN echo "RSeQC - inner_distance.py: $(inner_distance.py --version | cut -d' ' -
LABEL org.opencontainers.image.authors="Emma Rousseau"
LABEL org.opencontainers.image.description="Companion container for running component rseqc rseqc_inner_distance"
LABEL org.opencontainers.image.created="2024-11-08T09:17:36Z"
LABEL org.opencontainers.image.created="2024-11-08T09:45:03Z"
LABEL org.opencontainers.image.source="https://github.com/MonashBioinformaticsPlatform/RSeQC"
LABEL org.opencontainers.image.revision="b3fcd52f2039056907160baf85fd84ac9c5b96be"
LABEL org.opencontainers.image.revision="1d17ce01e25569c8e898b8160af1480ad22fc986"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER