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Build branch main with version main (da3272d)

Browse Source 
Build pipeline: viash-hub.biobox.main-7x2wm

Source commit: da3272d011

Source message: Bcftools sort (#141)

* Initial commit

* Update on config file

* Update

* Update config.vsh.yaml

* Update config.vsh.yaml

* Update test.sh

* Update help.txt

* adding meta variables

* Adding test for bcf file

* Update CHANGELOG.md

* Update config.vsh.yaml

* requested changes

---------

Co-authored-by: Jakub Majercik <57993790+jakubmajercik@users.noreply.github.com>
This commit is contained in:
CI
2024-09-02 13:42:09 +00:00
parent 7dd88311d4
commit f066ef0ffa
208 changed files with 5948 additions and 245 deletions
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2
target/executable/bedtools/bedtools_bamtofastq/.config.vsh.yaml
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@@ -187,7 +187,7 @@ build_info:
output: "target/executable/bedtools/bedtools_bamtofastq"
executable: "target/executable/bedtools/bedtools_bamtofastq/bedtools_bamtofastq"
viash_version: "0.9.0-RC7"
git_commit: "f3e87e58c921a4ef59fe8946edcd066cdfc8de9c"
git_commit: "da3272d0118227ee788cd93b222201f557729397"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

4
target/executable/bedtools/bedtools_bamtofastq/bedtools_bamtofastq
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@@ -483,9 +483,9 @@ RUN echo "bedtools: \"$(bedtools --version | sed -n 's/^bedtools //p')\"" > /var
LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo"
LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_bamtofastq"
LABEL org.opencontainers.image.created="2024-09-02T13:10:09Z"
LABEL org.opencontainers.image.created="2024-09-02T13:28:09Z"
LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2"
LABEL org.opencontainers.image.revision="f3e87e58c921a4ef59fe8946edcd066cdfc8de9c"
LABEL org.opencontainers.image.revision="da3272d0118227ee788cd93b222201f557729397"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

2
target/executable/bedtools/bedtools_bed12tobed6/.config.vsh.yaml
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@@ -176,7 +176,7 @@ build_info:
output: "target/executable/bedtools/bedtools_bed12tobed6"
executable: "target/executable/bedtools/bedtools_bed12tobed6/bedtools_bed12tobed6"
viash_version: "0.9.0-RC7"
git_commit: "f3e87e58c921a4ef59fe8946edcd066cdfc8de9c"
git_commit: "da3272d0118227ee788cd93b222201f557729397"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

4
target/executable/bedtools/bedtools_bed12tobed6/bedtools_bed12tobed6
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@@ -480,9 +480,9 @@ RUN echo "bedtools: \"$(bedtools --version | sed -n 's/^bedtools //p')\"" > /var
LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo"
LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_bed12tobed6"
LABEL org.opencontainers.image.created="2024-09-02T13:10:08Z"
LABEL org.opencontainers.image.created="2024-09-02T13:28:07Z"
LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2"
LABEL org.opencontainers.image.revision="f3e87e58c921a4ef59fe8946edcd066cdfc8de9c"
LABEL org.opencontainers.image.revision="da3272d0118227ee788cd93b222201f557729397"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

2
target/executable/bedtools/bedtools_bedtobam/.config.vsh.yaml
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@@ -214,7 +214,7 @@ build_info:
output: "target/executable/bedtools/bedtools_bedtobam"
executable: "target/executable/bedtools/bedtools_bedtobam/bedtools_bedtobam"
viash_version: "0.9.0-RC7"
git_commit: "f3e87e58c921a4ef59fe8946edcd066cdfc8de9c"
git_commit: "da3272d0118227ee788cd93b222201f557729397"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

4
target/executable/bedtools/bedtools_bedtobam/bedtools_bedtobam
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@@ -496,9 +496,9 @@ RUN echo "bedtools: \"$(bedtools --version | sed -n 's/^bedtools //p')\"" > /var
LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo"
LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_bedtobam"
LABEL org.opencontainers.image.created="2024-09-02T13:10:10Z"
LABEL org.opencontainers.image.created="2024-09-02T13:28:10Z"
LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2"
LABEL org.opencontainers.image.revision="f3e87e58c921a4ef59fe8946edcd066cdfc8de9c"
LABEL org.opencontainers.image.revision="da3272d0118227ee788cd93b222201f557729397"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

2
target/executable/bedtools/bedtools_getfasta/.config.vsh.yaml
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@@ -232,7 +232,7 @@ build_info:
output: "target/executable/bedtools/bedtools_getfasta"
executable: "target/executable/bedtools/bedtools_getfasta/bedtools_getfasta"
viash_version: "0.9.0-RC7"
git_commit: "f3e87e58c921a4ef59fe8946edcd066cdfc8de9c"
git_commit: "da3272d0118227ee788cd93b222201f557729397"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

4
target/executable/bedtools/bedtools_getfasta/bedtools_getfasta
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@@ -526,9 +526,9 @@ RUN echo "bedtools: \"$(bedtools --version | sed -n 's/^bedtools //p')\"" > /var
LABEL org.opencontainers.image.authors="Dries Schaumont"
LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_getfasta"
LABEL org.opencontainers.image.created="2024-09-02T13:10:08Z"
LABEL org.opencontainers.image.created="2024-09-02T13:28:08Z"
LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2"
LABEL org.opencontainers.image.revision="f3e87e58c921a4ef59fe8946edcd066cdfc8de9c"
LABEL org.opencontainers.image.revision="da3272d0118227ee788cd93b222201f557729397"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

2
target/executable/bedtools/bedtools_groupby/.config.vsh.yaml
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@@ -273,7 +273,7 @@ build_info:
output: "target/executable/bedtools/bedtools_groupby"
executable: "target/executable/bedtools/bedtools_groupby/bedtools_groupby"
viash_version: "0.9.0-RC7"
git_commit: "f3e87e58c921a4ef59fe8946edcd066cdfc8de9c"
git_commit: "da3272d0118227ee788cd93b222201f557729397"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

4
target/executable/bedtools/bedtools_groupby/bedtools_groupby
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@@ -552,9 +552,9 @@ RUN echo "bedtools: \"$(bedtools --version | sed -n 's/^bedtools //p')\"" > /var
LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo"
LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_groupby"
LABEL org.opencontainers.image.created="2024-09-02T13:10:09Z"
LABEL org.opencontainers.image.created="2024-09-02T13:28:09Z"
LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2"
LABEL org.opencontainers.image.revision="f3e87e58c921a4ef59fe8946edcd066cdfc8de9c"
LABEL org.opencontainers.image.revision="da3272d0118227ee788cd93b222201f557729397"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

2
target/executable/bedtools/bedtools_intersect/.config.vsh.yaml
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@@ -410,7 +410,7 @@ build_info:
output: "target/executable/bedtools/bedtools_intersect"
executable: "target/executable/bedtools/bedtools_intersect/bedtools_intersect"
viash_version: "0.9.0-RC7"
git_commit: "f3e87e58c921a4ef59fe8946edcd066cdfc8de9c"
git_commit: "da3272d0118227ee788cd93b222201f557729397"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

4
target/executable/bedtools/bedtools_intersect/bedtools_intersect
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@@ -633,9 +633,9 @@ RUN echo "bedtools: \"$(bedtools --version | sed -n 's/^bedtools //p')\"" > /var
LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo"
LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_intersect"
LABEL org.opencontainers.image.created="2024-09-02T13:10:08Z"
LABEL org.opencontainers.image.created="2024-09-02T13:28:08Z"
LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2"
LABEL org.opencontainers.image.revision="f3e87e58c921a4ef59fe8946edcd066cdfc8de9c"
LABEL org.opencontainers.image.revision="da3272d0118227ee788cd93b222201f557729397"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

2
target/executable/bedtools/bedtools_links/.config.vsh.yaml
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@@ -210,7 +210,7 @@ build_info:
output: "target/executable/bedtools/bedtools_links"
executable: "target/executable/bedtools/bedtools_links/bedtools_links"
viash_version: "0.9.0-RC7"
git_commit: "f3e87e58c921a4ef59fe8946edcd066cdfc8de9c"
git_commit: "da3272d0118227ee788cd93b222201f557729397"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

4
target/executable/bedtools/bedtools_links/bedtools_links
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@@ -500,9 +500,9 @@ RUN echo "bedtools: \"$(bedtools --version | sed -n 's/^bedtools //p')\"" > /var
LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo"
LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_links"
LABEL org.opencontainers.image.created="2024-09-02T13:10:09Z"
LABEL org.opencontainers.image.created="2024-09-02T13:28:08Z"
LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2"
LABEL org.opencontainers.image.revision="f3e87e58c921a4ef59fe8946edcd066cdfc8de9c"
LABEL org.opencontainers.image.revision="da3272d0118227ee788cd93b222201f557729397"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

2
target/executable/bedtools/bedtools_merge/.config.vsh.yaml
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@@ -279,7 +279,7 @@ build_info:
output: "target/executable/bedtools/bedtools_merge"
executable: "target/executable/bedtools/bedtools_merge/bedtools_merge"
viash_version: "0.9.0-RC7"
git_commit: "f3e87e58c921a4ef59fe8946edcd066cdfc8de9c"
git_commit: "da3272d0118227ee788cd93b222201f557729397"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

4
target/executable/bedtools/bedtools_merge/bedtools_merge
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@@ -558,9 +558,9 @@ RUN echo "bedtools: \"$(bedtools --version | sed -n 's/^bedtools //p')\"" > /var
LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo"
LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_merge"
LABEL org.opencontainers.image.created="2024-09-02T13:10:07Z"
LABEL org.opencontainers.image.created="2024-09-02T13:28:07Z"
LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2"
LABEL org.opencontainers.image.revision="f3e87e58c921a4ef59fe8946edcd066cdfc8de9c"
LABEL org.opencontainers.image.revision="da3272d0118227ee788cd93b222201f557729397"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

2
target/executable/bedtools/bedtools_sort/.config.vsh.yaml
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@@ -222,7 +222,7 @@ build_info:
output: "target/executable/bedtools/bedtools_sort"
executable: "target/executable/bedtools/bedtools_sort/bedtools_sort"
viash_version: "0.9.0-RC7"
git_commit: "f3e87e58c921a4ef59fe8946edcd066cdfc8de9c"
git_commit: "da3272d0118227ee788cd93b222201f557729397"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

4
target/executable/bedtools/bedtools_sort/bedtools_sort
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@@ -509,9 +509,9 @@ RUN echo "bedtools: \"$(bedtools --version | sed -n 's/^bedtools //p')\"" > /var
LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo"
LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_sort"
LABEL org.opencontainers.image.created="2024-09-02T13:10:10Z"
LABEL org.opencontainers.image.created="2024-09-02T13:28:09Z"
LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2"
LABEL org.opencontainers.image.revision="f3e87e58c921a4ef59fe8946edcd066cdfc8de9c"
LABEL org.opencontainers.image.revision="da3272d0118227ee788cd93b222201f557729397"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER