2 Commits

Author	SHA1	Message	Date
CI	6f2f840fd9	Build branch main with version main (7f8bcc2) ... Build pipeline: viash-hub.biobox.main-zp6tq Source commit: 7f8bcc2b3e Source message: BD rhapsody sequence analysis (#96) * wip * fix test * add help * update 2.2 args * fix bug * extend test data * output separate files * analyse missing args * tweaks to test * fix script * fix test * fix test * move small reference * wip generate wta test data * don't forget about umi in r1 * remove unneeded pkg * load reference in memory just once * fix random choices * extend test * add abc immunediscoverypanel * wip abc testing code * fix abc test; need unique instrument, run and flowcell ids for each sample * add smk data * add entry to changelog * remove old test file * adapt test for missing read * update description * add comment * ensure cwl files are absolute * Apply suggestions from code review Co-authored-by: Dries Schaumont <5946712+DriesSchaumont@users.noreply.github.com> * fix suggestion * newer pipelines have docker requirements as a hint instead of a strict requirement * rename str to content * remove deleted resources * fix containers * fix script * fix suggestion * fix suggestion... * fix test * fix component name * fix test * apply suggestions * fix test * added note * fix changelog * fix changelog again * splitting hairs here --------- Co-authored-by: Dries Schaumont <5946712+DriesSchaumont@users.noreply.github.com>	2024-09-17 10:13:18 +00:00
CI	f47054953e	Build branch main with version main (38f635a) ... Build pipeline: viash-hub.biobox.main-dz9k8 Source commit: 38f635ad57 Source message: Add agat convert genscan2gff (#100) * add config * add help * add test data and expected output adn the script to obtain them * add running script * add test script * update changelog * cleanup * fix tests * format description * remove unused argument --inflate-off * update --config description * add requirements * create temporary directory and clean up on exit * add GENSCAN in keywords * add set -e to test * fix create temporary directory * add set -eo pipefail to test * add set -eo pipefail to script * fix create temporary directory * update --config description * cleanup changelog * cleanup changelog * Update deprecated variable --------- Co-authored-by: Robrecht Cannoodt <rcannood@gmail.com>	2024-09-17 07:19:20 +00:00