CI
93f55cc2ee
Build pipeline: viash-hub.biobox.main-dkgvl
Source commit: ad89f43726
Source message: Add authors to package config and update author information (#180)
* Add authors to package config and update author information
* update changelog
* add linkedin
76 lines
2.3 KiB
JSON
76 lines
2.3 KiB
JSON
{
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"$schema": "https://json-schema.org/draft/2020-12/schema",
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"title": "agat_convert_mfannot2gff",
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"description": "Conversion utility for MFannot \"masterfile\" annotation produced by the\n[MFannot pipeline](http://megasun.bch.umontreal.ca/RNAweasel/). Reports\nGFF3 format.\n",
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"type": "object",
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"$defs": {
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"inputs": {
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"title": "Inputs",
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"type": "object",
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"description": "No description",
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"properties": {
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"mfannot": {
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"type": "string",
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"format": "path",
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"exists": true,
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"description": "The mfannot input file.",
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"help_text": "Type: `file`, multiple: `False`, required, direction: `input`, example: `\"input.mfannot\"`. "
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}
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}
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},
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"outputs": {
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"title": "Outputs",
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"type": "object",
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"description": "No description",
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"properties": {
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"gff": {
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"type": "string",
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"format": "path",
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"description": "The GFF output file.",
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"help_text": "Type: `file`, multiple: `False`, required, default: `\"$id.$key.gff.gff\"`, direction: `output`, example: `\"output.gff\"`. ",
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"default": "$id.$key.gff.gff"
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}
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}
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},
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"arguments": {
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"title": "Arguments",
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"type": "object",
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"description": "No description",
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"properties": {
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"config": {
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"type": "string",
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"format": "path",
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"description": "AGAT config file",
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"help_text": "Type: `file`, multiple: `False`, direction: `input`, example: `\"custom_agat_config.yaml\"`. "
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}
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}
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},
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"nextflow input-output arguments": {
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"title": "Nextflow input-output arguments",
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"type": "object",
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"description": "Input/output parameters for Nextflow itself. Please note that both publishDir and publish_dir are supported but at least one has to be configured.",
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"properties": {
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"publish_dir": {
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"type": "string",
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"description": "Path to an output directory.",
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"help_text": "Type: `string`, multiple: `False`, required, example: `\"output/\"`. "
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}
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}
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}
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},
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"allOf": [
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{
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"$ref": "#/$defs/inputs"
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},
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{
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"$ref": "#/$defs/outputs"
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},
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{
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"$ref": "#/$defs/arguments"
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},
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{
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"$ref": "#/$defs/nextflow input-output arguments"
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}
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]
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}
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