CI
71f1661df8
Build pipeline: viash-hub.biobox.main-w9wb7
Source commit: 219ba1d3d0
Source message: Add more fq components (#179)
* add fq_lint, move fq_subsample, improve unit tests
* update changelog
98 lines
3.0 KiB
JSON
98 lines
3.0 KiB
JSON
{
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"$schema": "https://json-schema.org/draft/2020-12/schema",
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"title": "fq_subsample",
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"description": "fq subsample outputs a subset of records from single or paired FASTQ files.",
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"type": "object",
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"$defs": {
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"input": {
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"title": "Input",
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"type": "object",
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"description": "No description",
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"properties": {
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"input_1": {
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"type": "string",
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"format": "path",
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"exists": true,
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"description": "First input fastq file to subsample",
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"help_text": "Type: `file`, multiple: `False`, required, direction: `input`. "
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},
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"input_2": {
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"type": "string",
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"format": "path",
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"description": "Second input fastq files to subsample",
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"help_text": "Type: `file`, multiple: `False`, direction: `input`. "
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}
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}
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},
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"output": {
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"title": "Output",
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"type": "object",
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"description": "No description",
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"properties": {
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"output_1": {
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"type": "string",
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"format": "path",
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"description": "Sampled read 1 fastq files",
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"help_text": "Type: `file`, multiple: `False`, default: `\"$id.$key.output_1\"`, direction: `output`. ",
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"default": "$id.$key.output_1"
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},
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"output_2": {
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"type": "string",
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"format": "path",
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"description": "Sampled read 2 fastq files",
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"help_text": "Type: `file`, multiple: `False`, default: `\"$id.$key.output_2\"`, direction: `output`. ",
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"default": "$id.$key.output_2"
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}
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}
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},
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"options": {
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"title": "Options",
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"type": "object",
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"description": "No description",
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"properties": {
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"probability": {
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"type": "number",
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"description": "The probability a record is kept, as a percentage (0.0, 1.0)",
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"help_text": "Type: `double`, multiple: `False`. "
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},
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"record_count": {
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"type": "integer",
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"description": "The exact number of records to keep",
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"help_text": "Type: `integer`, multiple: `False`. "
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},
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"seed": {
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"type": "integer",
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"description": "Seed to use for the random number generator",
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"help_text": "Type: `integer`, multiple: `False`. "
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}
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}
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},
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"nextflow input-output arguments": {
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"title": "Nextflow input-output arguments",
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"type": "object",
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"description": "Input/output parameters for Nextflow itself. Please note that both publishDir and publish_dir are supported but at least one has to be configured.",
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"properties": {
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"publish_dir": {
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"type": "string",
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"description": "Path to an output directory.",
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"help_text": "Type: `string`, multiple: `False`, required, example: `\"output/\"`. "
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}
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}
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}
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},
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"allOf": [
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{
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"$ref": "#/$defs/input"
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},
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{
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"$ref": "#/$defs/output"
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},
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{
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"$ref": "#/$defs/options"
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},
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{
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"$ref": "#/$defs/nextflow input-output arguments"
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}
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]
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}
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