CI
93f55cc2ee
Build pipeline: viash-hub.biobox.main-dkgvl
Source commit: ad89f43726
Source message: Add authors to package config and update author information (#180)
* Add authors to package config and update author information
* update changelog
* add linkedin
86 lines
2.5 KiB
JSON
86 lines
2.5 KiB
JSON
{
|
|
"$schema": "https://json-schema.org/draft/2020-12/schema",
|
|
"title": "seqtk_sample",
|
|
"description": "Subsamples sequences from FASTA/Q files.",
|
|
"type": "object",
|
|
"$defs": {
|
|
"inputs": {
|
|
"title": "Inputs",
|
|
"type": "object",
|
|
"description": "No description",
|
|
"properties": {
|
|
"input": {
|
|
"type": "string",
|
|
"format": "path",
|
|
"exists": true,
|
|
"description": "The input FASTA/Q file.",
|
|
"help_text": "Type: `file`, multiple: `False`, required, direction: `input`. "
|
|
}
|
|
}
|
|
},
|
|
"outputs": {
|
|
"title": "Outputs",
|
|
"type": "object",
|
|
"description": "No description",
|
|
"properties": {
|
|
"output": {
|
|
"type": "string",
|
|
"format": "path",
|
|
"description": "The output FASTA/Q file.",
|
|
"help_text": "Type: `file`, multiple: `False`, required, default: `\"$id.$key.output\"`, direction: `output`. ",
|
|
"default": "$id.$key.output"
|
|
}
|
|
}
|
|
},
|
|
"options": {
|
|
"title": "Options",
|
|
"type": "object",
|
|
"description": "No description",
|
|
"properties": {
|
|
"seed": {
|
|
"type": "integer",
|
|
"description": "Seed for random generator.",
|
|
"help_text": "Type: `integer`, multiple: `False`, example: `42`. "
|
|
},
|
|
"fraction_number": {
|
|
"type": "number",
|
|
"description": "Fraction or number of sequences to sample.",
|
|
"help_text": "Type: `double`, multiple: `False`, required, example: `0.1`. "
|
|
},
|
|
"two_pass_mode": {
|
|
"type": "boolean",
|
|
"description": "Twice as slow but with much reduced memory",
|
|
"help_text": "Type: `boolean_true`, multiple: `False`, default: `false`. ",
|
|
"default": false
|
|
}
|
|
}
|
|
},
|
|
"nextflow input-output arguments": {
|
|
"title": "Nextflow input-output arguments",
|
|
"type": "object",
|
|
"description": "Input/output parameters for Nextflow itself. Please note that both publishDir and publish_dir are supported but at least one has to be configured.",
|
|
"properties": {
|
|
"publish_dir": {
|
|
"type": "string",
|
|
"description": "Path to an output directory.",
|
|
"help_text": "Type: `string`, multiple: `False`, required, example: `\"output/\"`. "
|
|
}
|
|
}
|
|
}
|
|
},
|
|
"allOf": [
|
|
{
|
|
"$ref": "#/$defs/inputs"
|
|
},
|
|
{
|
|
"$ref": "#/$defs/outputs"
|
|
},
|
|
{
|
|
"$ref": "#/$defs/options"
|
|
},
|
|
{
|
|
"$ref": "#/$defs/nextflow input-output arguments"
|
|
}
|
|
]
|
|
}
|