CI
02c1c9ebea
Build pipeline: viash-hub.biobox.main-7dwhr
Source commit: da414e72c6
Source message: Add star solo component (#62)
* add star solo component
* change arguments from camelCase to snake_case
* get rid of multiple_sep
* drop star_solo component and just add arguments to star_align_reads
* Update src/star/star_align_reads/script.py
Co-authored-by: Dries Schaumont <5946712+DriesSchaumont@users.noreply.github.com>
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Co-authored-by: Dries Schaumont <5946712+DriesSchaumont@users.noreply.github.com>
16 lines
345 B
Bash
16 lines
345 B
Bash
#!/bin/bash
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## VIASH START
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## VIASH END
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[[ "$par_tab" == "false" ]] && unset par_tab
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[[ "$par_strand_aware" == "false" ]] && unset par_strand_aware
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seqtk subseq \
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${par_tab:+-t} \
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${par_strand_aware:+-s} \
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${par_sequence_line_length:+-l "$par_sequence_line_length"} \
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"$par_input" \
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"$par_name_list" \
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> "$par_output"
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