CI
35f315e911
Build pipeline: viash-hub.biobox.main-xrs9m
Source commit: 52f44f5049
Source message: Add agat sp add introns (#104)
* add help
* add config
* add run script
* add test data and expected output + script to fetch them
* add tests
* update changelog
* Update src/agat/agat_sp_add_introns/config.vsh.yaml
Co-authored-by: Dries Schaumont <5946712+DriesSchaumont@users.noreply.github.com>
* Update src/agat/agat_sp_add_introns/config.vsh.yaml
Co-authored-by: Dries Schaumont <5946712+DriesSchaumont@users.noreply.github.com>
* Update src/agat/agat_sp_add_introns/config.vsh.yaml
Co-authored-by: Dries Schaumont <5946712+DriesSchaumont@users.noreply.github.com>
* # create temporary directory and clean up on exit
* add set -e to test
* fix create temporary directory
* fix create temporary directory
* add set -eo pipefail to test
* add set -eo pipefail to script
* remove file added by mistake
* update --config description
* cleanup changelog
* cleanup changelog
* minor changes to config
* reduce test data size
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Co-authored-by: Robrecht Cannoodt <rcannood@gmail.com>
Co-authored-by: Dries Schaumont <5946712+DriesSchaumont@users.noreply.github.com>
Co-authored-by: Emma Rousseau <emmarou1@icloud.com>