CI 35f315e911 Build branch main with version main (52f44f5) ...

Build pipeline: viash-hub.biobox.main-xrs9m

Source commit: 52f44f5049

Source message: Add agat sp add introns (#104)

* add help

* add config

* add run script

* add test data and expected output + script to fetch them

* add tests

* update changelog

* Update src/agat/agat_sp_add_introns/config.vsh.yaml

Co-authored-by: Dries Schaumont <5946712+DriesSchaumont@users.noreply.github.com>

* Update src/agat/agat_sp_add_introns/config.vsh.yaml

Co-authored-by: Dries Schaumont <5946712+DriesSchaumont@users.noreply.github.com>

* Update src/agat/agat_sp_add_introns/config.vsh.yaml

Co-authored-by: Dries Schaumont <5946712+DriesSchaumont@users.noreply.github.com>

* # create temporary directory and clean up on exit

* add set -e to test

* fix create temporary directory

* fix create temporary directory

* add set -eo pipefail to test

* add set -eo pipefail to script

* remove file added by mistake

* update --config description

* cleanup changelog

* cleanup changelog

* minor changes to config

* reduce test data size

---------

Co-authored-by: Robrecht Cannoodt <rcannood@gmail.com>
Co-authored-by: Dries Schaumont <5946712+DriesSchaumont@users.noreply.github.com>
Co-authored-by: Emma Rousseau <emmarou1@icloud.com>

2024-10-26 13:31:11 +00:00

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agat

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