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Build pipeline: viash-hub.biobox.main-tr92f
Source commit: 9f81386259
Source message: Fq subsample (#147)
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923 B
Plaintext
20 lines
923 B
Plaintext
```
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fq subsample -h
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```
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Outputs a subset of records
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Usage: fq subsample [OPTIONS] --r1-dst <R1_DST> <--probability <PROBABILITY>|--record-count <RECORD_COUNT>> <R1_SRC> [R2_SRC]
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Arguments:
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<R1_SRC> Read 1 source. Accepts both raw and gzipped FASTQ inputs
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[R2_SRC] Read 2 source. Accepts both raw and gzipped FASTQ inputs
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Options:
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-p, --probability <PROBABILITY> The probability a record is kept, as a percentage (0.0, 1.0). Cannot be used with `record-count`
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-n, --record-count <RECORD_COUNT> The exact number of records to keep. Cannot be used with `probability`
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-s, --seed <SEED> Seed to use for the random number generator
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--r1-dst <R1_DST> Read 1 destination. Output will be gzipped if ends in `.gz`
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--r2-dst <R2_DST> Read 2 destination. Output will be gzipped if ends in `.gz`
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-h, --help Print help
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-V, --version |