Files
biobox/src/multiqc/test_data/a.txt
CI 5fc8f64fcb Build branch update_busco with version update_busco (1ca6dec)
Build pipeline: viash-hub.biobox.update-busco-bsvnf

Source commit: 1ca6dec48e

Source message: Typo
2024-07-01 19:57:00 +00:00

1505 lines
43 KiB
Plaintext

# This file was produced by samtools stats (1.3+htslib-1.3) and can be plotted using plot-bamstats
# This file contains statistics for all reads.
# The command line was: stats mapped/a.bam
# CHK, Checksum [2]Read Names [3]Sequences [4]Qualities
# CHK, CRC32 of reads which passed filtering followed by addition (32bit overflow)
CHK db35d7d5 ec933459 1f587026
# Summary Numbers. Use `grep ^SN | cut -f 2-` to extract this part.
SN raw total sequences: 21838387
SN filtered sequences: 0
SN sequences: 21838387
SN is sorted: 1
SN 1st fragments: 21838387
SN last fragments: 0
SN reads mapped: 21231961
SN reads mapped and paired: 0 # paired-end technology bit set + both mates mapped
SN reads unmapped: 606426
SN reads properly paired: 0 # proper-pair bit set
SN reads paired: 0 # paired-end technology bit set
SN reads duplicated: 3096782 # PCR or optical duplicate bit set
SN reads MQ0: 4882153 # mapped and MQ=0
SN reads QC failed: 0
SN non-primary alignments: 0
SN total length: 1090509989 # ignores clipping
SN bases mapped: 1060219802 # ignores clipping
SN bases mapped (cigar): 1060219787 # more accurate
SN bases trimmed: 0
SN bases duplicated: 154717551
SN mismatches: 6032903 # from NM fields
SN error rate: 5.690238e-03 # mismatches / bases mapped (cigar)
SN average length: 49
SN maximum length: 50
SN average quality: 37.0
SN insert size average: 0.0
SN insert size standard deviation: 0.0
SN inward oriented pairs: 0
SN outward oriented pairs: 0
SN pairs with other orientation: 0
SN pairs on different chromosomes: 0
# First Fragment Qualitites. Use `grep ^FFQ | cut -f 2-` to extract this part.
# Columns correspond to qualities and rows to cycles. First column is the cycle number.
FFQ 1 0 0 51315 0 0 0 0 0 0 0 0 0 0 0 0 382312 0 0 0 0 0 0 178198 0 0 0 0 1338772 0 0 0 0 0 19887790 0 0 0 0 0 0 0 0
FFQ 2 0 0 5115 0 0 0 0 0 0 0 0 0 0 0 0 275192 0 0 0 0 0 0 147400 0 0 0 0 1284560 0 0 0 0 0 20126120 0 0 0 0 0 0 0 0
FFQ 3 0 0 5128 0 0 0 0 0 0 0 0 0 0 0 0 191502 0 0 0 0 0 0 150841 0 0 0 0 1285815 0 0 0 0 0 20205101 0 0 0 0 0 0 0 0
FFQ 4 0 0 5145 0 0 0 0 0 0 0 0 0 0 0 0 146549 0 0 0 0 0 0 39295 0 0 0 0 471059 0 0 0 0 0 1708658 0 0 0 19467681 0 0 0 0
FFQ 5 0 0 5171 0 0 0 0 0 0 0 0 0 0 0 0 182896 0 0 0 0 0 0 41859 0 0 0 0 541845 0 0 0 0 0 1799240 0 0 0 19267376 0 0 0 0
FFQ 6 0 0 5207 0 0 0 4751 0 0 0 0 0 0 0 0 177726 0 0 0 0 0 0 50754 0 0 0 0 533328 0 0 0 0 0 1789862 0 0 0 19276759 0 0 0 0
FFQ 7 0 0 5265 0 0 0 5303 0 0 0 0 0 0 0 0 189482 0 0 0 0 0 0 50374 0 0 0 0 545491 0 0 0 0 0 1801670 0 0 0 19240802 0 0 0 0
FFQ 8 0 0 5321 0 0 0 5251 0 0 0 0 0 0 0 0 189946 0 0 0 0 0 0 50759 0 0 0 0 544729 0 0 0 0 0 1805074 0 0 0 19237307 0 0 0 0
FFQ 9 0 0 5412 0 0 0 5572 0 0 0 0 0 0 0 0 194980 0 0 0 0 0 0 50487 0 0 0 0 546813 0 0 0 0 0 1809993 0 0 0 19225130 0 0 0 0
FFQ 10 0 0 5522 0 0 0 5109 0 0 0 0 0 0 0 0 187331 0 0 0 0 0 0 52119 0 0 0 0 547170 0 0 0 0 0 1806426 0 0 0 19234710 0 0 0 0
FFQ 11 0 0 5659 0 0 0 5437 0 0 0 0 0 0 0 0 188095 0 0 0 0 0 0 53798 0 0 0 0 550305 0 0 0 0 0 1815355 0 0 0 19219738 0 0 0 0
FFQ 12 0 0 5842 0 0 0 5812 0 0 0 0 0 0 0 0 191987 0 0 0 0 0 0 54137 0 0 0 0 551697 0 0 0 0 0 1820134 0 0 0 19208778 0 0 0 0
FFQ 13 0 0 6054 0 0 0 5991 0 0 0 0 0 0 0 0 190425 0 0 0 0 0 0 55749 0 0 0 0 554090 0 0 0 0 0 1824863 0 0 0 19201215 0 0 0 0
FFQ 14 0 0 6305 0 0 0 6562 0 0 0 0 0 0 0 0 194459 0 0 0 0 0 0 56577 0 0 0 0 553776 0 0 0 0 0 1736245 0 0 0 6044499 0 0 13239964 0
FFQ 15 0 0 6575 0 0 0 6948 0 0 0 0 0 0 0 0 200015 0 0 0 0 0 0 58113 0 0 0 0 558164 0 0 0 0 0 1741159 0 0 0 6049860 0 0 13217553 0
FFQ 16 0 0 6884 0 0 0 7121 0 0 0 0 0 0 0 0 201645 0 0 0 0 0 0 59457 0 0 0 0 560449 0 0 0 0 0 1751983 0 0 0 6029168 0 0 13221680 0
FFQ 17 0 0 7255 0 0 0 7367 0 0 0 0 0 0 0 0 199780 0 0 0 0 0 0 63085 0 0 0 0 565569 0 0 0 0 0 1761217 0 0 0 6046012 0 0 13188102 0
FFQ 18 0 0 7720 0 0 0 8336 0 0 0 0 0 0 0 0 200938 0 0 0 0 0 0 65311 0 0 0 0 558465 0 0 0 0 0 1759662 0 0 0 6058023 0 0 13179932 0
FFQ 19 0 0 8413 0 0 0 8308 0 0 0 0 0 0 0 0 201721 0 0 0 0 0 0 69098 0 0 0 0 563047 0 0 0 0 0 1769492 0 0 0 5699288 0 0 13519020 0
FFQ 20 0 0 8973 0 0 0 9516 0 0 0 0 0 0 0 0 201161 0 0 0 0 0 0 74284 0 0 0 0 562610 0 0 0 0 0 1778241 0 0 0 5767457 0 0 13436145 0
FFQ 21 0 0 9857 0 0 0 10500 0 0 0 0 0 0 0 0 200349 0 0 0 0 0 0 80072 0 0 0 0 557657 0 0 0 0 0 1780395 0 0 0 5847132 0 0 13352425 0
FFQ 22 0 0 11063 0 0 0 12270 0 0 0 0 0 0 0 0 204602 0 0 0 0 0 0 89896 0 0 0 0 558198 0 0 0 0 0 1791483 0 0 0 5932912 0 0 13237963 0
FFQ 23 0 0 12768 0 0 0 14297 0 0 0 0 0 0 0 0 207883 0 0 0 0 0 0 99992 0 0 0 0 556435 0 0 0 0 0 1802873 0 0 0 6033565 0 0 13110574 0
FFQ 24 0 0 14914 0 0 0 16397 0 0 0 0 0 0 0 0 207240 0 0 0 0 0 0 111512 0 0 0 0 545672 0 0 0 0 0 1806750 0 0 0 6007638 0 0 13128264 0
FFQ 25 0 0 17715 0 0 0 20138 0 0 0 0 0 0 0 0 214768 0 0 0 0 0 0 129032 0 0 0 0 540112 0 0 0 0 0 1819460 0 0 0 6047119 0 0 13050043 0
FFQ 26 0 0 21240 0 0 0 34290 0 0 0 0 0 0 0 0 249730 0 0 0 0 0 0 144422 0 0 0 0 520807 0 0 0 0 0 1809886 0 0 0 6058279 0 0 12999733 0
FFQ 27 0 0 24829 0 0 0 43086 0 0 0 0 0 0 0 0 259480 0 0 0 0 0 0 161601 0 0 0 0 518294 0 0 0 0 0 1824722 0 0 0 6047197 0 0 12959178 0
FFQ 28 0 0 28496 0 0 0 52585 0 0 0 0 0 0 0 0 260264 0 0 0 0 0 0 176084 0 0 0 0 509295 0 0 0 0 0 1839906 0 0 0 6068273 0 0 12903484 0
FFQ 29 0 0 32506 0 0 0 62389 0 0 0 0 0 0 0 0 254623 0 0 0 0 0 0 189495 0 0 0 0 499599 0 0 0 0 0 1852205 0 0 0 6080516 0 0 12867054 0
FFQ 30 0 0 36854 0 0 0 73580 0 0 0 0 0 0 0 0 247860 0 0 0 0 0 0 200625 0 0 0 0 495018 0 0 0 0 0 1863132 0 0 0 6112314 0 0 12809004 0
FFQ 31 0 0 41323 0 0 0 87468 0 0 0 0 0 0 0 0 242078 0 0 0 0 0 0 209555 0 0 0 0 491444 0 0 0 0 0 1867737 0 0 0 6132089 0 0 12766610 0
FFQ 32 0 0 46286 0 0 0 98002 0 0 0 0 0 0 0 0 232699 0 0 0 0 0 0 213564 0 0 0 0 491302 0 0 0 0 0 1878843 0 0 0 6142018 0 0 12735496 0
FFQ 33 0 0 51663 0 0 0 106786 0 0 0 0 0 0 0 0 221792 0 0 0 0 0 0 218240 0 0 0 0 491145 0 0 0 0 0 1877911 0 0 0 6158285 0 0 12712271 0
FFQ 34 0 0 57443 0 0 0 119491 0 0 0 0 0 0 0 0 216326 0 0 0 0 0 0 222138 0 0 0 0 487486 0 0 0 0 0 1875659 0 0 0 6153206 0 0 12706214 0
FFQ 35 0 0 63864 0 0 0 122385 0 0 0 0 0 0 0 0 210969 0 0 0 0 0 0 227897 0 0 0 0 488945 0 0 0 0 0 1888985 0 0 0 6136699 0 0 12698075 0
FFQ 36 0 0 70925 0 0 0 127772 0 0 0 0 0 0 0 0 204278 0 0 0 0 0 0 232925 0 0 0 0 489984 0 0 0 0 0 1893912 0 0 0 6147628 0 0 12670239 0
FFQ 37 0 0 78443 0 0 0 130513 0 0 0 0 0 0 0 0 201817 0 0 0 0 0 0 237205 0 0 0 0 489393 0 0 0 0 0 1901072 0 0 0 6157060 0 0 12641982 0
FFQ 38 0 0 86727 0 0 0 134572 0 0 0 0 0 0 0 0 201643 0 0 0 0 0 0 245851 0 0 0 0 493135 0 0 0 0 0 1911564 0 0 0 6168370 0 0 12595418 0
FFQ 39 0 0 96199 0 0 0 136517 0 0 0 0 0 0 0 0 202556 0 0 0 0 0 0 253424 0 0 0 0 496159 0 0 0 0 0 1926927 0 0 0 6191376 0 0 12533859 0
FFQ 40 0 0 106625 0 0 0 141535 0 0 0 0 0 0 0 0 207572 0 0 0 0 0 0 263379 0 0 0 0 494281 0 0 0 0 0 1936713 0 0 0 6212472 0 0 12474092 0
FFQ 41 0 0 118435 0 0 0 134585 0 0 0 0 0 0 0 0 207617 0 0 0 0 0 0 271430 0 0 0 0 497097 0 0 0 0 0 1952887 0 0 0 6236465 0 0 12417628 0
FFQ 42 0 0 132662 0 0 0 134133 0 0 0 0 0 0 0 0 204434 0 0 0 0 0 0 279354 0 0 0 0 498810 0 0 0 0 0 1968372 0 0 0 6267796 0 0 12349794 0
FFQ 43 0 0 147587 0 0 0 131817 0 0 0 0 0 0 0 0 204674 0 0 0 0 0 0 288492 0 0 0 0 497849 0 0 0 0 0 1975284 0 0 0 6290454 0 0 12298484 0
FFQ 44 0 0 166442 0 0 0 128205 0 0 0 0 0 0 0 0 201990 0 0 0 0 0 0 298737 0 0 0 0 496519 0 0 0 0 0 1988815 0 0 0 6294537 0 0 12258940 0
FFQ 45 0 0 190003 0 0 0 124333 0 0 0 0 0 0 0 0 196796 0 0 0 0 0 0 309371 0 0 0 0 499163 0 0 0 0 0 2001867 0 0 0 6259352 0 0 12252716 0
FFQ 46 0 0 220981 0 0 0 116347 0 0 0 0 0 0 0 0 191467 0 0 0 0 0 0 316096 0 0 0 0 498894 0 0 0 0 0 2007430 0 0 0 6270683 0 0 12210477 0
FFQ 47 0 0 258782 0 0 0 106166 0 0 0 0 0 0 0 0 185518 0 0 0 0 0 0 319187 0 0 0 0 496114 0 0 0 0 0 2015168 0 0 0 6276041 0 0 12156632 0
FFQ 48 0 0 310568 0 0 0 93125 0 0 0 0 0 0 0 0 177253 0 0 0 0 0 0 323208 0 0 0 0 501414 0 0 0 0 0 2033190 0 0 0 6270044 0 0 12009645 0
FFQ 49 0 0 374982 0 0 0 66673 0 0 0 0 0 0 0 0 165208 0 0 0 0 0 0 314721 0 0 0 0 492972 0 0 0 0 0 2005393 0 0 0 6174269 0 0 11627542 0
FFQ 50 0 0 468205 0 0 0 30279 0 0 0 0 0 0 0 0 157265 0 0 0 0 0 0 309324 0 0 0 0 497388 0 0 0 0 0 2038361 0 0 0 6218900 0 0 11502038 0
FFQ 51 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
# Last Fragment Qualitites. Use `grep ^LFQ | cut -f 2-` to extract this part.
# Columns correspond to qualities and rows to cycles. First column is the cycle number.
LFQ 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
LFQ 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
LFQ 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
LFQ 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
LFQ 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
LFQ 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
LFQ 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
LFQ 8 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
LFQ 9 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
LFQ 10 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
LFQ 11 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
LFQ 12 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
LFQ 13 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
LFQ 14 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
LFQ 15 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
LFQ 16 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
LFQ 17 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
LFQ 18 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
LFQ 19 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
LFQ 20 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
LFQ 21 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
LFQ 22 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
LFQ 23 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
LFQ 24 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
LFQ 25 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
LFQ 26 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
LFQ 27 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
LFQ 28 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
LFQ 29 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
LFQ 30 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
LFQ 31 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
LFQ 32 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
LFQ 33 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
LFQ 34 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
LFQ 35 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
LFQ 36 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
LFQ 37 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
LFQ 38 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
LFQ 39 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
LFQ 40 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
LFQ 41 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
LFQ 42 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
LFQ 43 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
LFQ 44 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
LFQ 45 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
LFQ 46 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
LFQ 47 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
LFQ 48 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
LFQ 49 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
LFQ 50 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
LFQ 51 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
# GC Content of first fragments. Use `grep ^GCF | cut -f 2-` to extract this part.
GCF 0.75 865
GCF 1.76 1418
GCF 2.76 1432
GCF 3.77 2552
GCF 4.27 2584
GCF 5.03 2582
GCF 5.78 4188
GCF 6.78 4242
GCF 7.79 6900
GCF 8.79 6990
GCF 9.80 12077
GCF 10.30 12202
GCF 11.06 12248
GCF 11.81 20918
GCF 12.31 21159
GCF 13.07 21223
GCF 13.82 35416
GCF 14.32 35417
GCF 14.82 35899
GCF 15.33 35912
GCF 16.08 58403
GCF 16.83 59262
GCF 17.34 59292
GCF 17.84 92651
GCF 18.34 92652
GCF 18.84 93563
GCF 19.35 93799
GCF 20.10 141217
GCF 20.85 142627
GCF 21.36 143006
GCF 21.86 205422
GCF 22.36 205429
GCF 22.86 207354
GCF 23.37 207906
GCF 23.87 290147
GCF 24.37 290170
GCF 24.87 292864
GCF 25.38 293730
GCF 25.88 405518
GCF 26.38 405534
GCF 26.88 408551
GCF 27.39 408580
GCF 27.89 570253
GCF 28.39 570499
GCF 28.89 570545
GCF 29.40 575537
GCF 29.90 829159
GCF 30.40 829379
GCF 30.90 829405
GCF 31.41 836277
GCF 31.91 1143374
GCF 32.66 1143659
GCF 33.42 1146746
GCF 33.92 1501224
GCF 34.42 1501256
GCF 34.92 1501488
GCF 35.43 1507360
GCF 35.93 1778503
GCF 36.43 1778542
GCF 36.93 1778582
GCF 37.44 1783301
GCF 37.94 1767410
GCF 38.44 1767928
GCF 38.94 1768071
GCF 39.45 1769688
GCF 39.95 1656761
GCF 40.45 1657229
GCF 40.95 1657212
GCF 41.46 1658172
GCF 41.96 1509858
GCF 42.46 1509735
GCF 42.96 1509702
GCF 43.47 1509894
GCF 43.97 1444340
GCF 44.47 1444607
GCF 44.97 1444566
GCF 45.48 1444635
GCF 45.98 1405845
GCF 46.48 1405793
GCF 46.98 1405225
GCF 47.49 1405190
GCF 47.99 1360256
GCF 48.49 1360229
GCF 49.25 1359649
GCF 50.25 1272600
GCF 51.01 1271785
GCF 51.51 1271790
GCF 52.01 1115634
GCF 52.51 1115609
GCF 53.02 1114429
GCF 53.52 1114416
GCF 54.02 921342
GCF 54.52 921028
GCF 55.03 921029
GCF 55.53 919941
GCF 56.03 716231
GCF 56.78 715994
GCF 57.54 715097
GCF 58.04 532571
GCF 58.54 527473
GCF 59.05 527469
GCF 59.55 526587
GCF 60.05 376831
GCF 60.55 372736
GCF 61.06 372536
GCF 61.56 371968
GCF 62.06 252936
GCF 62.56 249647
GCF 63.07 249528
GCF 63.57 249527
GCF 64.07 163481
GCF 64.57 161228
GCF 65.08 161158
GCF 65.58 161154
GCF 66.08 101911
GCF 66.83 100650
GCF 67.59 100609
GCF 68.09 60847
GCF 68.59 59897
GCF 69.10 59890
GCF 69.60 59865
GCF 70.10 36290
GCF 70.60 35728
GCF 71.11 35725
GCF 71.61 35692
GCF 72.36 23067
GCF 73.12 22797
GCF 73.62 22799
GCF 74.12 15342
GCF 74.62 15317
GCF 75.13 15185
GCF 75.63 15186
GCF 76.13 10477
GCF 76.63 10474
GCF 77.14 10363
GCF 77.64 10359
GCF 78.14 7327
GCF 78.64 7313
GCF 79.40 7302
GCF 80.15 5084
GCF 80.65 5086
GCF 81.16 5049
GCF 81.66 5047
GCF 82.16 3472
GCF 82.66 3470
GCF 83.42 3464
GCF 84.17 2302
GCF 84.67 2303
GCF 85.43 2287
GCF 86.18 1488
GCF 86.68 1487
GCF 87.19 1486
GCF 87.69 1480
GCF 88.44 841
GCF 89.20 842
GCF 89.70 837
GCF 90.70 472
GCF 91.71 471
GCF 92.71 248
GCF 93.72 244
GCF 94.97 126
GCF 96.98 54
GCF 98.99 21
# GC Content of last fragments. Use `grep ^GCL | cut -f 2-` to extract this part.
# ACGT content per cycle. Use `grep ^GCC | cut -f 2-` to extract this part. The columns are: cycle; A,C,G,T base counts as a percentage of all A/C/G/T bases [%]; and N and O counts as a percentage of all A/C/G/T bases [%]
GCC 1 27.19 22.69 22.08 28.04 0.21 0.00
GCC 2 27.70 22.16 21.57 28.57 0.00 0.00
GCC 3 29.07 20.57 19.82 30.54 0.00 0.00
GCC 4 28.81 20.73 20.29 30.17 0.00 0.00
GCC 5 29.23 20.17 19.74 30.86 0.00 0.00
GCC 6 29.00 20.47 19.91 30.62 0.00 0.00
GCC 7 28.88 20.46 19.88 30.78 0.00 0.00
GCC 8 28.85 20.74 20.02 30.39 0.00 0.00
GCC 9 28.51 21.15 20.49 29.85 0.00 0.00
GCC 10 28.05 21.54 20.95 29.46 0.00 0.00
GCC 11 28.15 21.56 20.88 29.41 0.00 0.00
GCC 12 28.32 21.33 20.59 29.77 0.00 0.00
GCC 13 28.46 21.18 20.45 29.91 0.00 0.00
GCC 14 28.36 21.04 20.35 30.25 0.00 0.00
GCC 15 28.47 20.86 20.15 30.51 0.00 0.00
GCC 16 28.29 21.14 20.36 30.21 0.00 0.00
GCC 17 28.23 21.10 20.54 30.12 0.00 0.00
GCC 18 28.35 20.96 20.66 30.02 0.00 0.00
GCC 19 28.06 21.42 21.18 29.34 0.00 0.00
GCC 20 28.15 21.29 21.01 29.55 0.00 0.00
GCC 21 28.09 21.28 21.33 29.31 0.00 0.00
GCC 22 28.07 21.26 21.17 29.51 0.00 0.00
GCC 23 28.22 21.06 20.72 30.01 0.00 0.00
GCC 24 28.13 21.20 20.87 29.80 0.00 0.00
GCC 25 28.32 20.89 20.58 30.21 0.00 0.00
GCC 26 28.13 21.20 20.74 29.92 0.00 0.00
GCC 27 27.96 21.34 20.88 29.81 0.00 0.00
GCC 28 28.06 21.17 20.89 29.88 0.00 0.00
GCC 29 27.79 21.60 21.33 29.29 0.00 0.00
GCC 30 27.84 21.56 21.24 29.35 0.00 0.00
GCC 31 27.84 21.59 21.14 29.43 0.00 0.00
GCC 32 27.82 21.68 21.19 29.31 0.00 0.00
GCC 33 28.14 21.20 20.82 29.84 0.00 0.00
GCC 34 28.00 21.30 20.78 29.92 0.00 0.00
GCC 35 28.14 21.19 20.64 30.03 0.00 0.00
GCC 36 28.22 21.16 20.67 29.95 0.00 0.00
GCC 37 28.12 21.36 20.65 29.87 0.00 0.00
GCC 38 28.15 21.52 20.76 29.58 0.00 0.00
GCC 39 27.94 21.78 21.08 29.19 0.00 0.00
GCC 40 27.79 21.80 21.18 29.23 0.00 0.00
GCC 41 27.65 21.89 21.45 29.01 0.00 0.00
GCC 42 27.94 21.65 21.15 29.26 0.01 0.00
GCC 43 27.90 21.51 20.95 29.65 0.00 0.00
GCC 44 27.87 21.68 21.03 29.42 0.00 0.00
GCC 45 28.27 21.39 20.69 29.66 0.00 0.00
GCC 46 28.12 21.20 20.68 30.00 0.01 0.00
GCC 47 28.06 21.43 21.00 29.51 0.00 0.00
GCC 48 28.08 21.47 20.96 29.48 0.00 0.00
GCC 49 27.53 21.94 21.68 28.85 0.02 0.00
GCC 50 28.35 21.19 20.97 29.49 0.00 0.00
# Insert sizes. Use `grep ^IS | cut -f 2-` to extract this part. The columns are: insert size, pairs total, inward oriented pairs, outward oriented pairs, other pairs
# Read lengths. Use `grep ^RL | cut -f 2-` to extract this part. The columns are: read length, count
RL 30 83
RL 31 94
RL 32 117
RL 33 130
RL 34 144
RL 35 156
RL 36 178
RL 37 205
RL 38 263
RL 39 348
RL 40 525
RL 41 789
RL 42 714
RL 43 456
RL 44 584
RL 45 1226
RL 46 18767
RL 47 95161
RL 48 496687
RL 50 21221760
# Indel distribution. Use `grep ^ID | cut -f 2-` to extract this part. The columns are: length, number of insertions, number of deletions
ID 1 64125 118566
ID 2 11857 15129
ID 3 1458 1538
# Indels per cycle. Use `grep ^IC | cut -f 2-` to extract this part. The columns are: cycle, number of insertions (fwd), .. (rev) , number of deletions (fwd), .. (rev)
IC 1 0 0 0 1
IC 2 0 203 0 212
IC 3 0 552 0 878
IC 4 0 892 0 1911
IC 5 0 1594 0 2256
IC 6 0 1567 0 2393
IC 7 0 1533 0 2675
IC 8 0 1585 0 2765
IC 9 0 1556 0 2857
IC 10 0 1643 0 3115
IC 11 0 1682 0 2944
IC 12 0 1707 0 3030
IC 13 0 1811 0 3124
IC 14 0 1723 0 3116
IC 15 0 1838 0 3290
IC 16 0 1687 0 3202
IC 17 0 1841 0 3250
IC 18 0 1850 0 3390
IC 19 0 1873 0 3484
IC 20 0 1785 0 3497
IC 21 0 1763 0 3457
IC 22 0 1782 0 3406
IC 23 0 1841 0 3383
IC 24 0 1828 0 3277
IC 25 0 1809 0 3322
IC 26 0 1830 0 3369
IC 27 0 1890 0 3294
IC 28 0 1825 0 3385
IC 29 0 1864 0 3340
IC 30 0 1899 0 3649
IC 31 0 1958 0 3771
IC 32 0 2052 0 3555
IC 33 0 2086 0 3636
IC 34 0 1962 0 3649
IC 35 0 1945 0 3550
IC 36 0 1972 0 3423
IC 37 0 1836 0 3536
IC 38 0 1845 0 3515
IC 39 0 1883 0 3451
IC 40 0 1806 0 3300
IC 41 0 1850 0 3304
IC 42 0 1710 0 3148
IC 43 0 1825 0 2849
IC 44 0 1639 0 2612
IC 45 0 1708 0 1439
IC 46 0 1072 0 765
IC 47 0 659 0 340
IC 48 0 288 0 118
IC 49 0 91 0 0
# Coverage distribution. Use `grep ^COV | cut -f 2-` to extract this part.
COV [1-1] 1 609977704
COV [2-2] 2 115063033
COV [3-3] 3 16119927
COV [4-4] 4 2001769
COV [5-5] 5 294243
COV [6-6] 6 82570
COV [7-7] 7 41437
COV [8-8] 8 27141
COV [9-9] 9 19572
COV [10-10] 10 15755
COV [11-11] 11 12467
COV [12-12] 12 10784
COV [13-13] 13 8648
COV [14-14] 14 7758
COV [15-15] 15 6163
COV [16-16] 16 5267
COV [17-17] 17 4349
COV [18-18] 18 3615
COV [19-19] 19 3296
COV [20-20] 20 2835
COV [21-21] 21 2708
COV [22-22] 22 2026
COV [23-23] 23 1585
COV [24-24] 24 1605
COV [25-25] 25 1606
COV [26-26] 26 1387
COV [27-27] 27 1529
COV [28-28] 28 1270
COV [29-29] 29 1185
COV [30-30] 30 1228
COV [31-31] 31 1101
COV [32-32] 32 1125
COV [33-33] 33 1032
COV [34-34] 34 935
COV [35-35] 35 880
COV [36-36] 36 985
COV [37-37] 37 1009
COV [38-38] 38 915
COV [39-39] 39 838
COV [40-40] 40 828
COV [41-41] 41 837
COV [42-42] 42 894
COV [43-43] 43 903
COV [44-44] 44 902
COV [45-45] 45 780
COV [46-46] 46 796
COV [47-47] 47 854
COV [48-48] 48 804
COV [49-49] 49 755
COV [50-50] 50 728
COV [51-51] 51 753
COV [52-52] 52 834
COV [53-53] 53 797
COV [54-54] 54 806
COV [55-55] 55 748
COV [56-56] 56 815
COV [57-57] 57 814
COV [58-58] 58 775
COV [59-59] 59 779
COV [60-60] 60 744
COV [61-61] 61 787
COV [62-62] 62 809
COV [63-63] 63 788
COV [64-64] 64 748
COV [65-65] 65 712
COV [66-66] 66 614
COV [67-67] 67 631
COV [68-68] 68 717
COV [69-69] 69 660
COV [70-70] 70 591
COV [71-71] 71 559
COV [72-72] 72 666
COV [73-73] 73 535
COV [74-74] 74 565
COV [75-75] 75 526
COV [76-76] 76 514
COV [77-77] 77 504
COV [78-78] 78 493
COV [79-79] 79 452
COV [80-80] 80 422
COV [81-81] 81 511
COV [82-82] 82 494
COV [83-83] 83 445
COV [84-84] 84 495
COV [85-85] 85 412
COV [86-86] 86 495
COV [87-87] 87 447
COV [88-88] 88 469
COV [89-89] 89 451
COV [90-90] 90 522
COV [91-91] 91 471
COV [92-92] 92 464
COV [93-93] 93 476
COV [94-94] 94 520
COV [95-95] 95 497
COV [96-96] 96 445
COV [97-97] 97 494
COV [98-98] 98 502
COV [99-99] 99 490
COV [100-100] 100 461
COV [101-101] 101 527
COV [102-102] 102 533
COV [103-103] 103 515
COV [104-104] 104 611
COV [105-105] 105 471
COV [106-106] 106 492
COV [107-107] 107 445
COV [108-108] 108 467
COV [109-109] 109 455
COV [110-110] 110 393
COV [111-111] 111 394
COV [112-112] 112 370
COV [113-113] 113 344
COV [114-114] 114 324
COV [115-115] 115 308
COV [116-116] 116 332
COV [117-117] 117 272
COV [118-118] 118 248
COV [119-119] 119 220
COV [120-120] 120 308
COV [121-121] 121 281
COV [122-122] 122 313
COV [123-123] 123 259
COV [124-124] 124 222
COV [125-125] 125 189
COV [126-126] 126 219
COV [127-127] 127 194
COV [128-128] 128 188
COV [129-129] 129 181
COV [130-130] 130 223
COV [131-131] 131 200
COV [132-132] 132 180
COV [133-133] 133 167
COV [134-134] 134 168
COV [135-135] 135 153
COV [136-136] 136 179
COV [137-137] 137 183
COV [138-138] 138 175
COV [139-139] 139 177
COV [140-140] 140 168
COV [141-141] 141 180
COV [142-142] 142 197
COV [143-143] 143 194
COV [144-144] 144 170
COV [145-145] 145 172
COV [146-146] 146 149
COV [147-147] 147 173
COV [148-148] 148 184
COV [149-149] 149 172
COV [150-150] 150 168
COV [151-151] 151 187
COV [152-152] 152 187
COV [153-153] 153 174
COV [154-154] 154 134
COV [155-155] 155 179
COV [156-156] 156 153
COV [157-157] 157 160
COV [158-158] 158 160
COV [159-159] 159 171
COV [160-160] 160 163
COV [161-161] 161 168
COV [162-162] 162 183
COV [163-163] 163 175
COV [164-164] 164 183
COV [165-165] 165 194
COV [166-166] 166 180
COV [167-167] 167 174
COV [168-168] 168 155
COV [169-169] 169 173
COV [170-170] 170 169
COV [171-171] 171 199
COV [172-172] 172 190
COV [173-173] 173 231
COV [174-174] 174 221
COV [175-175] 175 235
COV [176-176] 176 216
COV [177-177] 177 215
COV [178-178] 178 210
COV [179-179] 179 226
COV [180-180] 180 207
COV [181-181] 181 232
COV [182-182] 182 232
COV [183-183] 183 214
COV [184-184] 184 210
COV [185-185] 185 231
COV [186-186] 186 191
COV [187-187] 187 216
COV [188-188] 188 210
COV [189-189] 189 218
COV [190-190] 190 260
COV [191-191] 191 240
COV [192-192] 192 239
COV [193-193] 193 252
COV [194-194] 194 268
COV [195-195] 195 237
COV [196-196] 196 256
COV [197-197] 197 254
COV [198-198] 198 266
COV [199-199] 199 297
COV [200-200] 200 255
COV [201-201] 201 285
COV [202-202] 202 259
COV [203-203] 203 249
COV [204-204] 204 238
COV [205-205] 205 247
COV [206-206] 206 261
COV [207-207] 207 244
COV [208-208] 208 241
COV [209-209] 209 237
COV [210-210] 210 271
COV [211-211] 211 245
COV [212-212] 212 234
COV [213-213] 213 252
COV [214-214] 214 241
COV [215-215] 215 215
COV [216-216] 216 227
COV [217-217] 217 212
COV [218-218] 218 230
COV [219-219] 219 184
COV [220-220] 220 213
COV [221-221] 221 225
COV [222-222] 222 188
COV [223-223] 223 214
COV [224-224] 224 198
COV [225-225] 225 195
COV [226-226] 226 192
COV [227-227] 227 191
COV [228-228] 228 184
COV [229-229] 229 182
COV [230-230] 230 177
COV [231-231] 231 169
COV [232-232] 232 174
COV [233-233] 233 152
COV [234-234] 234 154
COV [235-235] 235 132
COV [236-236] 236 130
COV [237-237] 237 146
COV [238-238] 238 130
COV [239-239] 239 103
COV [240-240] 240 161
COV [241-241] 241 120
COV [242-242] 242 117
COV [243-243] 243 132
COV [244-244] 244 134
COV [245-245] 245 140
COV [246-246] 246 123
COV [247-247] 247 126
COV [248-248] 248 126
COV [249-249] 249 99
COV [250-250] 250 87
COV [251-251] 251 103
COV [252-252] 252 109
COV [253-253] 253 101
COV [254-254] 254 91
COV [255-255] 255 72
COV [256-256] 256 64
COV [257-257] 257 88
COV [258-258] 258 86
COV [259-259] 259 87
COV [260-260] 260 79
COV [261-261] 261 67
COV [262-262] 262 76
COV [263-263] 263 89
COV [264-264] 264 64
COV [265-265] 265 52
COV [266-266] 266 64
COV [267-267] 267 69
COV [268-268] 268 64
COV [269-269] 269 60
COV [270-270] 270 55
COV [271-271] 271 44
COV [272-272] 272 58
COV [273-273] 273 63
COV [274-274] 274 63
COV [275-275] 275 75
COV [276-276] 276 81
COV [277-277] 277 81
COV [278-278] 278 74
COV [279-279] 279 44
COV [280-280] 280 78
COV [281-281] 281 78
COV [282-282] 282 81
COV [283-283] 283 75
COV [284-284] 284 100
COV [285-285] 285 50
COV [286-286] 286 57
COV [287-287] 287 52
COV [288-288] 288 54
COV [289-289] 289 65
COV [290-290] 290 67
COV [291-291] 291 58
COV [292-292] 292 56
COV [293-293] 293 48
COV [294-294] 294 61
COV [295-295] 295 51
COV [296-296] 296 55
COV [297-297] 297 60
COV [298-298] 298 50
COV [299-299] 299 47
COV [300-300] 300 62
COV [301-301] 301 56
COV [302-302] 302 62
COV [303-303] 303 49
COV [304-304] 304 66
COV [305-305] 305 64
COV [306-306] 306 61
COV [307-307] 307 53
COV [308-308] 308 51
COV [309-309] 309 68
COV [310-310] 310 53
COV [311-311] 311 60
COV [312-312] 312 73
COV [313-313] 313 61
COV [314-314] 314 70
COV [315-315] 315 47
COV [316-316] 316 44
COV [317-317] 317 51
COV [318-318] 318 52
COV [319-319] 319 56
COV [320-320] 320 60
COV [321-321] 321 56
COV [322-322] 322 55
COV [323-323] 323 51
COV [324-324] 324 60
COV [325-325] 325 60
COV [326-326] 326 65
COV [327-327] 327 75
COV [328-328] 328 52
COV [329-329] 329 63
COV [330-330] 330 59
COV [331-331] 331 50
COV [332-332] 332 51
COV [333-333] 333 57
COV [334-334] 334 44
COV [335-335] 335 32
COV [336-336] 336 62
COV [337-337] 337 47
COV [338-338] 338 69
COV [339-339] 339 64
COV [340-340] 340 51
COV [341-341] 341 56
COV [342-342] 342 51
COV [343-343] 343 49
COV [344-344] 344 72
COV [345-345] 345 61
COV [346-346] 346 51
COV [347-347] 347 76
COV [348-348] 348 75
COV [349-349] 349 55
COV [350-350] 350 48
COV [351-351] 351 52
COV [352-352] 352 68
COV [353-353] 353 47
COV [354-354] 354 59
COV [355-355] 355 52
COV [356-356] 356 51
COV [357-357] 357 59
COV [358-358] 358 57
COV [359-359] 359 69
COV [360-360] 360 59
COV [361-361] 361 80
COV [362-362] 362 42
COV [363-363] 363 46
COV [364-364] 364 65
COV [365-365] 365 60
COV [366-366] 366 45
COV [367-367] 367 48
COV [368-368] 368 39
COV [369-369] 369 48
COV [370-370] 370 44
COV [371-371] 371 49
COV [372-372] 372 61
COV [373-373] 373 48
COV [374-374] 374 45
COV [375-375] 375 55
COV [376-376] 376 54
COV [377-377] 377 67
COV [378-378] 378 53
COV [379-379] 379 65
COV [380-380] 380 49
COV [381-381] 381 61
COV [382-382] 382 48
COV [383-383] 383 49
COV [384-384] 384 49
COV [385-385] 385 45
COV [386-386] 386 40
COV [387-387] 387 38
COV [388-388] 388 41
COV [389-389] 389 46
COV [390-390] 390 42
COV [391-391] 391 53
COV [392-392] 392 38
COV [393-393] 393 36
COV [394-394] 394 37
COV [395-395] 395 40
COV [396-396] 396 43
COV [397-397] 397 24
COV [398-398] 398 54
COV [399-399] 399 36
COV [400-400] 400 40
COV [401-401] 401 28
COV [402-402] 402 52
COV [403-403] 403 70
COV [404-404] 404 52
COV [405-405] 405 49
COV [406-406] 406 42
COV [407-407] 407 37
COV [408-408] 408 41
COV [409-409] 409 61
COV [410-410] 410 44
COV [411-411] 411 36
COV [412-412] 412 58
COV [413-413] 413 37
COV [414-414] 414 53
COV [415-415] 415 33
COV [416-416] 416 44
COV [417-417] 417 35
COV [418-418] 418 40
COV [419-419] 419 43
COV [420-420] 420 48
COV [421-421] 421 58
COV [422-422] 422 53
COV [423-423] 423 44
COV [424-424] 424 55
COV [425-425] 425 62
COV [426-426] 426 49
COV [427-427] 427 43
COV [428-428] 428 31
COV [429-429] 429 47
COV [430-430] 430 54
COV [431-431] 431 43
COV [432-432] 432 57
COV [433-433] 433 33
COV [434-434] 434 50
COV [435-435] 435 49
COV [436-436] 436 32
COV [437-437] 437 49
COV [438-438] 438 40
COV [439-439] 439 44
COV [440-440] 440 42
COV [441-441] 441 43
COV [442-442] 442 42
COV [443-443] 443 50
COV [444-444] 444 36
COV [445-445] 445 29
COV [446-446] 446 46
COV [447-447] 447 34
COV [448-448] 448 40
COV [449-449] 449 40
COV [450-450] 450 46
COV [451-451] 451 28
COV [452-452] 452 37
COV [453-453] 453 42
COV [454-454] 454 42
COV [455-455] 455 44
COV [456-456] 456 38
COV [457-457] 457 42
COV [458-458] 458 42
COV [459-459] 459 38
COV [460-460] 460 45
COV [461-461] 461 34
COV [462-462] 462 38
COV [463-463] 463 36
COV [464-464] 464 44
COV [465-465] 465 43
COV [466-466] 466 44
COV [467-467] 467 31
COV [468-468] 468 58
COV [469-469] 469 44
COV [470-470] 470 57
COV [471-471] 471 39
COV [472-472] 472 37
COV [473-473] 473 42
COV [474-474] 474 38
COV [475-475] 475 41
COV [476-476] 476 40
COV [477-477] 477 41
COV [478-478] 478 44
COV [479-479] 479 40
COV [480-480] 480 48
COV [481-481] 481 34
COV [482-482] 482 40
COV [483-483] 483 41
COV [484-484] 484 45
COV [485-485] 485 44
COV [486-486] 486 48
COV [487-487] 487 32
COV [488-488] 488 44
COV [489-489] 489 38
COV [490-490] 490 22
COV [491-491] 491 32
COV [492-492] 492 45
COV [493-493] 493 28
COV [494-494] 494 33
COV [495-495] 495 39
COV [496-496] 496 46
COV [497-497] 497 32
COV [498-498] 498 34
COV [499-499] 499 30
COV [500-500] 500 30
COV [501-501] 501 31
COV [502-502] 502 39
COV [503-503] 503 44
COV [504-504] 504 30
COV [505-505] 505 34
COV [506-506] 506 25
COV [507-507] 507 48
COV [508-508] 508 35
COV [509-509] 509 41
COV [510-510] 510 38
COV [511-511] 511 36
COV [512-512] 512 45
COV [513-513] 513 26
COV [514-514] 514 34
COV [515-515] 515 35
COV [516-516] 516 36
COV [517-517] 517 29
COV [518-518] 518 28
COV [519-519] 519 31
COV [520-520] 520 34
COV [521-521] 521 47
COV [522-522] 522 35
COV [523-523] 523 44
COV [524-524] 524 58
COV [525-525] 525 26
COV [526-526] 526 40
COV [527-527] 527 36
COV [528-528] 528 37
COV [529-529] 529 55
COV [530-530] 530 37
COV [531-531] 531 32
COV [532-532] 532 33
COV [533-533] 533 39
COV [534-534] 534 34
COV [535-535] 535 26
COV [536-536] 536 42
COV [537-537] 537 25
COV [538-538] 538 40
COV [539-539] 539 38
COV [540-540] 540 35
COV [541-541] 541 31
COV [542-542] 542 33
COV [543-543] 543 38
COV [544-544] 544 36
COV [545-545] 545 39
COV [546-546] 546 35
COV [547-547] 547 36
COV [548-548] 548 41
COV [549-549] 549 38
COV [550-550] 550 30
COV [551-551] 551 33
COV [552-552] 552 40
COV [553-553] 553 33
COV [554-554] 554 30
COV [555-555] 555 41
COV [556-556] 556 31
COV [557-557] 557 37
COV [558-558] 558 41
COV [559-559] 559 26
COV [560-560] 560 30
COV [561-561] 561 35
COV [562-562] 562 35
COV [563-563] 563 34
COV [564-564] 564 35
COV [565-565] 565 39
COV [566-566] 566 29
COV [567-567] 567 41
COV [568-568] 568 29
COV [569-569] 569 27
COV [570-570] 570 40
COV [571-571] 571 32
COV [572-572] 572 30
COV [573-573] 573 25
COV [574-574] 574 35
COV [575-575] 575 30
COV [576-576] 576 28
COV [577-577] 577 34
COV [578-578] 578 21
COV [579-579] 579 31
COV [580-580] 580 34
COV [581-581] 581 18
COV [582-582] 582 31
COV [583-583] 583 24
COV [584-584] 584 30
COV [585-585] 585 31
COV [586-586] 586 32
COV [587-587] 587 23
COV [588-588] 588 33
COV [589-589] 589 31
COV [590-590] 590 28
COV [591-591] 591 27
COV [592-592] 592 28
COV [593-593] 593 40
COV [594-594] 594 28
COV [595-595] 595 26
COV [596-596] 596 22
COV [597-597] 597 34
COV [598-598] 598 35
COV [599-599] 599 29
COV [600-600] 600 23
COV [601-601] 601 34
COV [602-602] 602 19
COV [603-603] 603 25
COV [604-604] 604 23
COV [605-605] 605 33
COV [606-606] 606 27
COV [607-607] 607 31
COV [608-608] 608 23
COV [609-609] 609 29
COV [610-610] 610 34
COV [611-611] 611 36
COV [612-612] 612 32
COV [613-613] 613 27
COV [614-614] 614 26
COV [615-615] 615 31
COV [616-616] 616 27
COV [617-617] 617 36
COV [618-618] 618 15
COV [619-619] 619 36
COV [620-620] 620 20
COV [621-621] 621 30
COV [622-622] 622 30
COV [623-623] 623 40
COV [624-624] 624 29
COV [625-625] 625 24
COV [626-626] 626 40
COV [627-627] 627 36
COV [628-628] 628 24
COV [629-629] 629 20
COV [630-630] 630 18
COV [631-631] 631 28
COV [632-632] 632 28
COV [633-633] 633 23
COV [634-634] 634 24
COV [635-635] 635 21
COV [636-636] 636 18
COV [637-637] 637 22
COV [638-638] 638 24
COV [639-639] 639 24
COV [640-640] 640 19
COV [641-641] 641 26
COV [642-642] 642 16
COV [643-643] 643 24
COV [644-644] 644 22
COV [645-645] 645 19
COV [646-646] 646 24
COV [647-647] 647 27
COV [648-648] 648 22
COV [649-649] 649 15
COV [650-650] 650 30
COV [651-651] 651 32
COV [652-652] 652 21
COV [653-653] 653 25
COV [654-654] 654 24
COV [655-655] 655 26
COV [656-656] 656 33
COV [657-657] 657 20
COV [658-658] 658 28
COV [659-659] 659 32
COV [660-660] 660 28
COV [661-661] 661 29
COV [662-662] 662 22
COV [663-663] 663 26
COV [664-664] 664 18
COV [665-665] 665 28
COV [666-666] 666 24
COV [667-667] 667 30
COV [668-668] 668 24
COV [669-669] 669 24
COV [670-670] 670 21
COV [671-671] 671 31
COV [672-672] 672 22
COV [673-673] 673 24
COV [674-674] 674 27
COV [675-675] 675 28
COV [676-676] 676 30
COV [677-677] 677 34
COV [678-678] 678 43
COV [679-679] 679 31
COV [680-680] 680 26
COV [681-681] 681 26
COV [682-682] 682 24
COV [683-683] 683 25
COV [684-684] 684 21
COV [685-685] 685 16
COV [686-686] 686 30
COV [687-687] 687 23
COV [688-688] 688 30
COV [689-689] 689 19
COV [690-690] 690 22
COV [691-691] 691 30
COV [692-692] 692 30
COV [693-693] 693 23
COV [694-694] 694 39
COV [695-695] 695 15
COV [696-696] 696 20
COV [697-697] 697 29
COV [698-698] 698 34
COV [699-699] 699 18
COV [700-700] 700 31
COV [701-701] 701 23
COV [702-702] 702 25
COV [703-703] 703 36
COV [704-704] 704 34
COV [705-705] 705 35
COV [706-706] 706 29
COV [707-707] 707 31
COV [708-708] 708 22
COV [709-709] 709 22
COV [710-710] 710 26
COV [711-711] 711 29
COV [712-712] 712 34
COV [713-713] 713 33
COV [714-714] 714 20
COV [715-715] 715 23
COV [716-716] 716 24
COV [717-717] 717 25
COV [718-718] 718 24
COV [719-719] 719 28
COV [720-720] 720 26
COV [721-721] 721 24
COV [722-722] 722 19
COV [723-723] 723 21
COV [724-724] 724 28
COV [725-725] 725 23
COV [726-726] 726 29
COV [727-727] 727 28
COV [728-728] 728 31
COV [729-729] 729 15
COV [730-730] 730 25
COV [731-731] 731 26
COV [732-732] 732 17
COV [733-733] 733 20
COV [734-734] 734 15
COV [735-735] 735 23
COV [736-736] 736 14
COV [737-737] 737 20
COV [738-738] 738 21
COV [739-739] 739 24
COV [740-740] 740 20
COV [741-741] 741 24
COV [742-742] 742 24
COV [743-743] 743 23
COV [744-744] 744 18
COV [745-745] 745 18
COV [746-746] 746 14
COV [747-747] 747 13
COV [748-748] 748 20
COV [749-749] 749 37
COV [750-750] 750 22
COV [751-751] 751 25
COV [752-752] 752 21
COV [753-753] 753 16
COV [754-754] 754 24
COV [755-755] 755 20
COV [756-756] 756 20
COV [757-757] 757 29
COV [758-758] 758 16
COV [759-759] 759 15
COV [760-760] 760 16
COV [761-761] 761 21
COV [762-762] 762 22
COV [763-763] 763 24
COV [764-764] 764 17
COV [765-765] 765 15
COV [766-766] 766 21
COV [767-767] 767 27
COV [768-768] 768 16
COV [769-769] 769 29
COV [770-770] 770 27
COV [771-771] 771 17
COV [772-772] 772 16
COV [773-773] 773 23
COV [774-774] 774 28
COV [775-775] 775 16
COV [776-776] 776 24
COV [777-777] 777 16
COV [778-778] 778 20
COV [779-779] 779 27
COV [780-780] 780 18
COV [781-781] 781 27
COV [782-782] 782 18
COV [783-783] 783 23
COV [784-784] 784 12
COV [785-785] 785 33
COV [786-786] 786 20
COV [787-787] 787 22
COV [788-788] 788 15
COV [789-789] 789 18
COV [790-790] 790 19
COV [791-791] 791 19
COV [792-792] 792 31
COV [793-793] 793 17
COV [794-794] 794 16
COV [795-795] 795 17
COV [796-796] 796 16
COV [797-797] 797 18
COV [798-798] 798 19
COV [799-799] 799 22
COV [800-800] 800 12
COV [801-801] 801 19
COV [802-802] 802 22
COV [803-803] 803 15
COV [804-804] 804 18
COV [805-805] 805 20
COV [806-806] 806 14
COV [807-807] 807 20
COV [808-808] 808 22
COV [809-809] 809 16
COV [810-810] 810 23
COV [811-811] 811 24
COV [812-812] 812 27
COV [813-813] 813 15
COV [814-814] 814 18
COV [815-815] 815 28
COV [816-816] 816 22
COV [817-817] 817 32
COV [818-818] 818 14
COV [819-819] 819 21
COV [820-820] 820 18
COV [821-821] 821 21
COV [822-822] 822 17
COV [823-823] 823 18
COV [824-824] 824 17
COV [825-825] 825 21
COV [826-826] 826 11
COV [827-827] 827 14
COV [828-828] 828 15
COV [829-829] 829 18
COV [830-830] 830 18
COV [831-831] 831 27
COV [832-832] 832 21
COV [833-833] 833 24
COV [834-834] 834 25
COV [835-835] 835 19
COV [836-836] 836 27
COV [837-837] 837 19
COV [838-838] 838 24
COV [839-839] 839 16
COV [840-840] 840 17
COV [841-841] 841 12
COV [842-842] 842 22
COV [843-843] 843 18
COV [844-844] 844 11
COV [845-845] 845 29
COV [846-846] 846 22
COV [847-847] 847 18
COV [848-848] 848 25
COV [849-849] 849 19
COV [850-850] 850 13
COV [851-851] 851 18
COV [852-852] 852 21
COV [853-853] 853 19
COV [854-854] 854 19
COV [855-855] 855 19
COV [856-856] 856 17
COV [857-857] 857 21
COV [858-858] 858 21
COV [859-859] 859 15
COV [860-860] 860 28
COV [861-861] 861 14
COV [862-862] 862 20
COV [863-863] 863 10
COV [864-864] 864 15
COV [865-865] 865 20
COV [866-866] 866 18
COV [867-867] 867 18
COV [868-868] 868 17
COV [869-869] 869 13
COV [870-870] 870 19
COV [871-871] 871 14
COV [872-872] 872 19
COV [873-873] 873 14
COV [874-874] 874 13
COV [875-875] 875 20
COV [876-876] 876 28
COV [877-877] 877 21
COV [878-878] 878 14
COV [879-879] 879 21
COV [880-880] 880 22
COV [881-881] 881 16
COV [882-882] 882 18
COV [883-883] 883 24
COV [884-884] 884 22
COV [885-885] 885 22
COV [886-886] 886 23
COV [887-887] 887 19
COV [888-888] 888 16
COV [889-889] 889 11
COV [890-890] 890 18
COV [891-891] 891 18
COV [892-892] 892 16
COV [893-893] 893 20
COV [894-894] 894 18
COV [895-895] 895 13
COV [896-896] 896 25
COV [897-897] 897 15
COV [898-898] 898 22
COV [899-899] 899 21
COV [900-900] 900 13
COV [901-901] 901 16
COV [902-902] 902 16
COV [903-903] 903 22
COV [904-904] 904 19
COV [905-905] 905 24
COV [906-906] 906 26
COV [907-907] 907 20
COV [908-908] 908 14
COV [909-909] 909 15
COV [910-910] 910 19
COV [911-911] 911 19
COV [912-912] 912 19
COV [913-913] 913 17
COV [914-914] 914 21
COV [915-915] 915 24
COV [916-916] 916 6
COV [917-917] 917 21
COV [918-918] 918 10
COV [919-919] 919 13
COV [920-920] 920 25
COV [921-921] 921 12
COV [922-922] 922 12
COV [923-923] 923 13
COV [924-924] 924 21
COV [925-925] 925 13
COV [926-926] 926 24
COV [927-927] 927 13
COV [928-928] 928 9
COV [929-929] 929 17
COV [930-930] 930 7
COV [931-931] 931 9
COV [932-932] 932 19
COV [933-933] 933 16
COV [934-934] 934 21
COV [935-935] 935 17
COV [936-936] 936 14
COV [937-937] 937 13
COV [938-938] 938 17
COV [939-939] 939 14
COV [940-940] 940 10
COV [941-941] 941 20
COV [942-942] 942 19
COV [943-943] 943 17
COV [944-944] 944 16
COV [945-945] 945 13
COV [946-946] 946 14
COV [947-947] 947 17
COV [948-948] 948 11
COV [949-949] 949 12
COV [950-950] 950 14
COV [951-951] 951 11
COV [952-952] 952 14
COV [953-953] 953 11
COV [954-954] 954 14
COV [955-955] 955 18
COV [956-956] 956 18
COV [957-957] 957 17
COV [958-958] 958 13
COV [959-959] 959 17
COV [960-960] 960 19
COV [961-961] 961 14
COV [962-962] 962 19
COV [963-963] 963 7
COV [964-964] 964 12
COV [965-965] 965 13
COV [966-966] 966 13
COV [967-967] 967 15
COV [968-968] 968 21
COV [969-969] 969 16
COV [970-970] 970 18
COV [971-971] 971 4
COV [972-972] 972 18
COV [973-973] 973 14
COV [974-974] 974 17
COV [975-975] 975 17
COV [976-976] 976 10
COV [977-977] 977 11
COV [978-978] 978 16
COV [979-979] 979 13
COV [980-980] 980 14
COV [981-981] 981 27
COV [982-982] 982 18
COV [983-983] 983 20
COV [984-984] 984 15
COV [985-985] 985 18
COV [986-986] 986 14
COV [987-987] 987 15
COV [988-988] 988 19
COV [989-989] 989 22
COV [990-990] 990 12
COV [991-991] 991 11
COV [992-992] 992 14
COV [993-993] 993 20
COV [994-994] 994 11
COV [995-995] 995 11
COV [996-996] 996 15
COV [997-997] 997 17
COV [998-998] 998 6
COV [999-999] 999 11
COV [1000-1000] 1000 16
COV [1000<] 1000 29066
# GC-depth. Use `grep ^GCD | cut -f 2-` to extract this part. The columns are: GC%, unique sequence percentiles, 10th, 25th, 50th, 75th and 90th depth percentile
GCD 0.0 0.006 0.000 0.002 0.002 0.005 0.005
GCD 1.0 0.007 0.007 0.007 0.007 0.007 0.007
GCD 2.0 0.012 0.002 0.002 0.002 0.005 0.007
GCD 3.0 0.014 0.005 0.005 0.007 0.020 0.020
GCD 4.0 0.016 0.002 0.002 0.002 0.002 0.002
GCD 6.0 0.020 0.002 0.002 0.002 0.002 0.002
GCD 8.0 0.022 0.002 0.002 0.002 0.002 0.002
GCD 10.0 0.024 0.002 0.002 0.002 0.007 0.007
GCD 11.0 0.025 0.005 0.005 0.005 0.005 0.005
GCD 11.6 0.025 0.047 0.047 0.047 0.047 0.047
GCD 12.0 0.031 0.002 0.002 0.002 0.005 0.007
GCD 13.0 0.032 0.005 0.005 0.005 0.005 0.005
GCD 14.0 0.033 0.002 0.002 0.002 0.005 0.005
GCD 15.0 0.035 0.010 0.010 0.010 0.017 0.017
GCD 16.0 0.039 0.002 0.002 0.005 0.005 0.005
GCD 17.0 0.041 0.007 0.007 0.007 0.007 0.007
GCD 18.0 0.045 0.002 0.002 0.005 0.010 0.010
GCD 19.0 0.048 0.002 0.002 0.002 0.005 0.012
GCD 20.0 0.052 0.002 0.002 0.002 0.002 0.007
GCD 21.0 0.054 0.002 0.002 0.005 0.007 0.007
GCD 22.0 0.062 0.002 0.002 0.005 0.007 0.010
GCD 23.0 0.068 0.002 0.005 0.005 0.007 0.017
GCD 24.0 0.080 0.002 0.002 0.002 0.002 0.005
GCD 25.0 0.089 0.002 0.005 0.007 0.010 0.012
GCD 26.0 0.105 0.002 0.002 0.002 0.005 0.007
GCD 27.0 0.112 0.007 0.007 0.007 0.419 0.691
GCD 28.0 0.124 0.002 0.002 0.007 0.020 0.093
GCD 29.0 0.134 0.005 0.005 0.007 0.010 0.012
GCD 30.0 0.149 0.002 0.002 0.005 0.012 0.022
GCD 31.0 0.171 0.005 0.005 0.010 0.120 0.255
GCD 32.0 0.225 0.002 0.005 0.120 0.228 0.262
GCD 33.0 0.344 0.012 0.142 0.225 0.262 0.292
GCD 34.0 0.721 0.022 0.194 0.240 0.272 0.296
GCD 35.0 1.791 0.167 0.223 0.255 0.282 0.304
GCD 36.0 4.174 0.194 0.235 0.265 0.292 0.316
GCD 37.0 8.546 0.208 0.245 0.277 0.304 0.331
GCD 38.0 15.513 0.218 0.255 0.287 0.316 0.345
GCD 39.0 24.259 0.228 0.267 0.299 0.328 0.358
GCD 40.0 34.137 0.238 0.277 0.311 0.343 0.372
GCD 41.0 44.039 0.247 0.289 0.323 0.355 0.387
GCD 42.0 53.383 0.260 0.299 0.336 0.368 0.402
GCD 43.0 61.865 0.274 0.314 0.348 0.382 0.417
GCD 44.0 69.571 0.289 0.326 0.363 0.394 0.431
GCD 45.0 76.519 0.304 0.341 0.375 0.409 0.446
GCD 46.0 82.424 0.316 0.353 0.387 0.424 0.468
GCD 47.0 87.213 0.326 0.365 0.402 0.441 0.488
GCD 48.0 90.973 0.338 0.375 0.409 0.451 0.505
GCD 49.0 93.667 0.353 0.390 0.424 0.463 0.517
GCD 50.0 95.910 0.345 0.392 0.429 0.470 0.524
GCD 51.0 97.447 0.365 0.404 0.439 0.480 0.537
GCD 52.0 98.546 0.365 0.402 0.441 0.483 0.537
GCD 53.0 99.252 0.370 0.412 0.446 0.485 0.539
GCD 54.0 99.662 0.365 0.412 0.448 0.492 0.561
GCD 55.0 99.840 0.387 0.426 0.461 0.502 0.573
GCD 56.0 99.930 0.020 0.402 0.446 0.485 0.554
GCD 57.0 99.966 0.279 0.387 0.426 0.492 0.581
GCD 58.0 99.982 0.002 0.005 0.470 0.980 1.063
GCD 59.0 99.988 0.397 0.461 0.475 0.987 1.333
GCD 60.0 99.989 0.002 0.002 0.002 0.211 0.211
GCD 61.0 99.992 0.005 0.005 0.485 0.502 0.527
GCD 62.0 99.995 0.002 0.002 0.002 0.434 0.434
GCD 63.0 99.997 0.892 0.892 1.105 2.472 2.472
GCD 64.0 99.998 1.034 1.034 1.034 1.098 1.098
GCD 65.0 99.999 12.870 12.870 12.870 12.870 12.870
GCD 66.0 100.000 0.002 0.002 0.002 0.002 0.002