CI
6f2f840fd9
Build pipeline: viash-hub.biobox.main-zp6tq
Source commit: 7f8bcc2b3e
Source message: BD rhapsody sequence analysis (#96)
* wip
* fix test
* add help
* update 2.2 args
* fix bug
* extend test data
* output separate files
* analyse missing args
* tweaks to test
* fix script
* fix test
* fix test
* move small reference
* wip generate wta test data
* don't forget about umi in r1
* remove unneeded pkg
* load reference in memory just once
* fix random choices
* extend test
* add abc immunediscoverypanel
* wip abc testing code
* fix abc test; need unique instrument, run and flowcell ids for each sample
* add smk data
* add entry to changelog
* remove old test file
* adapt test for missing read
* update description
* add comment
* ensure cwl files are absolute
* Apply suggestions from code review
Co-authored-by: Dries Schaumont <5946712+DriesSchaumont@users.noreply.github.com>
* fix suggestion
* newer pipelines have docker requirements as a hint instead of a strict requirement
* rename str to content
* remove deleted resources
* fix containers
* fix script
* fix suggestion
* fix suggestion...
* fix test
* fix component name
* fix test
* apply suggestions
* fix test
* added note
* fix changelog
* fix changelog again
* splitting hairs here
---------
Co-authored-by: Dries Schaumont <5946712+DriesSchaumont@users.noreply.github.com>
61 lines
2.4 KiB
Plaintext
61 lines
2.4 KiB
Plaintext
>CD11c:B-LY6|ITGAX|AHS0056|pAbO Catalog_940024
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ATGCGTTGCGAGAGATATGCGTAGGTTGCTGATTGG
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>CD14:MPHIP9|CD14|AHS0037|pAbO Catalog_940005
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TGGCCCGTGGTAGCGCAATGTGAGATCGTAATAAGT
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>CXCR5|CXCR5|AHS0039|pAbO Catalog_940042
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AGGAAGGTCGATTGTATAACGCGGCATTGTAACGGC
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>CD19:SJ25C1|CD19|AHS0030|pAbO Catalog_940004
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TAGTAATGTGTTCGTAGCCGGTAATAATCTTCGTGG
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>CD25:2A3|IL2RA|AHS0026|pAbO Catalog_940009
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AGTTGTATGGGTTAGCCGAGAGTAGTGCGTATGATT
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>CD27:M-T271|CD27|AHS0025|pAbO Catalog_940018
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TGTCCGGTTTAGCGAATTGGGTTGAGTCACGTAGGT
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>CD278|ICOS|AHS0012|pAbO Catalog_940043
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ATAGTCCGCCGTAATCGTTGTGTCGCTGAAAGGGTT
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>CD279:EH12-1|PDCD1|AHS0014|pAbO Catalog_940015
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ATGGTAGTATCACGACGTAGTAGGGTAATTGGCAGT
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>CD3:UCHT1|CD3E|AHS0231|pAbO Catalog_940307
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AGCTAGGTGTTATCGGCAAGTTGTACGGTGAAGTCG
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>GITR|TNFRSF18|AHS0104|pAbO Catalog_940096
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TCTGTGTGTCGGGTTGAATCGTAGTGAGTTAGCGTG
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>Tim3|HAVCR2|AHS0016|pAbO Catalog_940066
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TAGGTAGTAGTCCCGTATATCCGATCCGTGTTGTTT
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>CD4:SK3|CD4|AHS0032|pAbO Catalog_940001
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TCGGTGTTATGAGTAGGTCGTCGTGCGGTTTGATGT
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>CD45RA:HI100|PTPRC|AHS0009|pAbO Catalog_940011
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AAGCGATTGCGAAGGGTTAGTCAGTACGTTATGTTG
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>CD56:NCAM16.2|NCAM1|AHS0019|pAbO Catalog_940007
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AGAGGTTGAGTCGTAATAATAATCGGAAGGCGTTGG
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>CD62L:DREG-56|SELL|AHS0049|pAbO Catalog_940041
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ATGGTAAATATGGGCGAATGCGGGTTGTGCTAAAGT
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>CCR7|CCR7|AHS0273|pAbO Catalog_940394
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AATGTGTGATCGGCAAAGGGTTCTCGGGTTAATATG
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>CXCR6|CXCR6|AHS0148|pAbO Catalog_940234
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GTGGTTGGTTATTCGGACGGTTCTATTGTGAGCGCT
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>CD127|IL7R|AHS0028|pAbO Catalog_940012
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AGTTATTAGGCTCGTAGGTATGTTTAGGTTATCGCG
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>CD134:ACT35|TNFRSF4|AHS0013|pAbO Catalog_940060
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GGTGTTGGTAAGACGGACGGAGTAGATATTCGAGGT
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>CD28:L293|CD28|AHS0138|pAbO Catalog_940226
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TTGTTGAGGATACGATGAAGCGGTTTAAGGGTGTGG
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>CD272|BTLA|AHS0052|pAbO Catalog_940105
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GTAGGTTGATAGTCGGCGATAGTGCGGTTGAAAGCT
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>CD8:SK1|CD8A|AHS0228|pAbO Catalog_940305
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AGGACATAGAGTAGGACGAGGTAGGCTTAAATTGCT
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>HLA-DR|CD74|AHS0035|pAbO Catalog_940010
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TGTTGGTTATTCGTTAGTGCATCCGTTTGGGCGTGG
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>CD16:3G8|FCGR3A|AHS0053|pAbO Catalog_940006
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TAAATCTAATCGCGGTAACATAACGGTGGGTAAGGT
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>CD183|CXCR3|AHS0031|pAbO Catalog_940030
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AAAGTGTTGGCGTTATGTGTTCGTTAGCGGTGTGGG
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>CD196|CCR6|AHS0034|pAbO Catalog_940033
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ACGTGTTATGGTGTTGTTCGAATTGTGGTAGTCAGT
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>CD137|TNFRSF9|AHS0003|pAbO Catalog_940055
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TGACAAGCAACGAGCGATACGAAAGGCGAAATTAGT
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>CD161:HP-3G10|KLRB1|AHS0205|pAbO Catalog_940283
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TTTAGGACGATTAGTTGTGCGGCATAGGAGGTGTTC
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>IgM|IGHM|AHS0198|pAbO Catalog_940276
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TTTGGAGGGTAGCTAGTTGCAGTTCGTGGTCGTTTC
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>IgD|IGHD|AHS0058|pAbO Catalog_940026
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TGAGGGATGTATAGCGAGAATTGCGACCGTAGACTT
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