CI
71f1661df8
Build pipeline: viash-hub.biobox.main-w9wb7
Source commit: 219ba1d3d0
Source message: Add more fq components (#179)
* add fq_lint, move fq_subsample, improve unit tests
* update changelog
23 lines
714 B
Bash
Executable File
23 lines
714 B
Bash
Executable File
#!/bin/bash
|
|
|
|
## VIASH START
|
|
## VIASH END
|
|
|
|
set -eo pipefail
|
|
|
|
# exclusive OR for required arguments $par_probability and $par_record_count
|
|
if { [ -n "$par_probability" ] && [ -n "$par_record_count" ]; } || \
|
|
{ [ -z "$par_probability" ] && [ -z "$par_record_count" ]; }; then
|
|
echo "Error: Please specify either --probability or --record_count, but not both." >&2
|
|
exit 1
|
|
fi
|
|
|
|
fq subsample \
|
|
${par_output_1:+--r1-dst "${par_output_1}"} \
|
|
${par_output_2:+--r2-dst "${par_output_2}"} \
|
|
${par_probability:+--probability "${par_probability}"} \
|
|
${par_record_count:+--record-count "${par_record_count}"} \
|
|
${par_seed:+--seed "${par_seed}"} \
|
|
${par_input_1} \
|
|
${par_input_2:+"$par_input_2"}
|