CI bca90c9331 Build branch main with version main (619f1bb) ...

Build pipeline: viash-hub.biobox.main-wqbh6

Source commit: 619f1bbb6d

Source message: Rsem-calculate-expression (#93)

* initial commit dedup

* Revert "initial commit dedup"

This reverts commit 38f586bec0ac9e4312b016e29c3aa0bd53f292b2.

* three rsem components initial commit

* update container setup

* Simplified container configuration

* temporarily remove version recording from config

* Complete config file

* add tests and complete config file

* change test dataset

* functional test, adjustements to scripts

* Update changelog

* Simplified test data and help.txt contents

* suggested changes, typos

* simplify, get rid of test_data folder

* Update CHANGELOG.md

* Update CHANGELOG.md

---------

Co-authored-by: Robrecht Cannoodt <rcannood@gmail.com>

2024-09-18 14:13:01 +00:00

..

agat

Build branch main with version main (619f1bb)

2024-09-18 14:13:01 +00:00

arriba

Build branch main with version main (619f1bb)

2024-09-18 14:13:01 +00:00

bcftools

Build branch main with version main (619f1bb)

2024-09-18 14:13:01 +00:00

bcl_convert

Build branch main with version main (619f1bb)

2024-09-18 14:13:01 +00:00

bd_rhapsody

Build branch main with version main (619f1bb)

2024-09-18 14:13:01 +00:00

bedtools

Build branch main with version main (619f1bb)

2024-09-18 14:13:01 +00:00

busco

Build branch main with version main (619f1bb)

2024-09-18 14:13:01 +00:00

cutadapt

Build branch main with version main (619f1bb)

2024-09-18 14:13:01 +00:00

falco

Build branch main with version main (619f1bb)

2024-09-18 14:13:01 +00:00

fastp

Build branch main with version main (619f1bb)

2024-09-18 14:13:01 +00:00

fastqc

Build branch main with version main (619f1bb)

2024-09-18 14:13:01 +00:00

featurecounts

Build branch main with version main (619f1bb)

2024-09-18 14:13:01 +00:00

fq_subsample

Build branch main with version main (619f1bb)

2024-09-18 14:13:01 +00:00

gffread

Build branch main with version main (619f1bb)

2024-09-18 14:13:01 +00:00

kallisto/kallisto_index

Build branch main with version main (619f1bb)

2024-09-18 14:13:01 +00:00

lofreq

Build branch main with version main (619f1bb)

2024-09-18 14:13:01 +00:00

multiqc

Build branch main with version main (619f1bb)

2024-09-18 14:13:01 +00:00

pear

Build branch main with version main (619f1bb)

2024-09-18 14:13:01 +00:00

qualimap/qualimap_rnaseq

Build branch main with version main (619f1bb)

2024-09-18 14:13:01 +00:00

rsem

Build branch main with version main (619f1bb)

2024-09-18 14:13:01 +00:00

salmon

Build branch main with version main (619f1bb)

2024-09-18 14:13:01 +00:00

samtools

Build branch main with version main (619f1bb)

2024-09-18 14:13:01 +00:00

seqtk

Build branch main with version main (619f1bb)

2024-09-18 14:13:01 +00:00

sortmerna

Build branch main with version main (619f1bb)

2024-09-18 14:13:01 +00:00

star

Build branch main with version main (619f1bb)

2024-09-18 14:13:01 +00:00

umi_tools

Build branch main with version main (619f1bb)

2024-09-18 14:13:01 +00:00