Build branch update_concat_text with version update_concat_text (b32ca42)
Build pipeline: viash-hub.craftbox.update-concat-text-7w97n
Source commit: b32ca42b46
Source message: upgrade concat_text
This commit is contained in:
223
target/executable/untar/.config.vsh.yaml
Normal file
223
target/executable/untar/.config.vsh.yaml
Normal file
@@ -0,0 +1,223 @@
|
||||
name: "untar"
|
||||
version: "update_concat_text"
|
||||
authors:
|
||||
- name: "Dries Schaumont"
|
||||
roles:
|
||||
- "author"
|
||||
- "maintainer"
|
||||
info:
|
||||
links:
|
||||
email: "dries@data-intuitive.com"
|
||||
github: "DriesSchaumont"
|
||||
orcid: "0000-0002-4389-0440"
|
||||
linkedin: "dries-schaumont"
|
||||
organizations:
|
||||
- name: "Data Intuitive"
|
||||
href: "https://www.data-intuitive.com"
|
||||
role: "Data Scientist"
|
||||
- name: "Robrecht Cannoodt"
|
||||
roles:
|
||||
- "reviewer"
|
||||
info:
|
||||
links:
|
||||
email: "robrecht@data-intuitive.com"
|
||||
github: "rcannood"
|
||||
orcid: "0000-0003-3641-729X"
|
||||
linkedin: "robrechtcannoodt"
|
||||
organizations:
|
||||
- name: "Data Intuitive"
|
||||
href: "https://www.data-intuitive.com"
|
||||
role: "Data Science Engineer"
|
||||
- name: "Open Problems"
|
||||
href: "https://openproblems.bio"
|
||||
role: "Core Member"
|
||||
argument_groups:
|
||||
- name: "Input arguments"
|
||||
arguments:
|
||||
- type: "file"
|
||||
name: "--input"
|
||||
description: "Tarball file to be unpacked."
|
||||
info: null
|
||||
must_exist: true
|
||||
create_parent: true
|
||||
required: true
|
||||
direction: "input"
|
||||
multiple: false
|
||||
multiple_sep: ";"
|
||||
- name: "Output arguments"
|
||||
arguments:
|
||||
- type: "file"
|
||||
name: "--output"
|
||||
description: "Directory to write the contents of the .tar file to."
|
||||
info: null
|
||||
must_exist: true
|
||||
create_parent: true
|
||||
required: true
|
||||
direction: "output"
|
||||
multiple: false
|
||||
multiple_sep: ";"
|
||||
- name: "Other arguments"
|
||||
arguments:
|
||||
- type: "string"
|
||||
name: "--exclude"
|
||||
alternatives:
|
||||
- "-e"
|
||||
description: "Prevents any file or member whose name matches the shell wildcard\
|
||||
\ (pattern) from being extracted."
|
||||
info: null
|
||||
example:
|
||||
- "docs/figures"
|
||||
required: false
|
||||
direction: "input"
|
||||
multiple: false
|
||||
multiple_sep: ";"
|
||||
resources:
|
||||
- type: "bash_script"
|
||||
path: "script.sh"
|
||||
is_executable: true
|
||||
summary: "Unpack a .tar file"
|
||||
description: "Unpack a .tar file. When the contents of the .tar file is just a single\
|
||||
\ directory,\nput the contents of the directory into the output folder instead of\
|
||||
\ that directory.\n"
|
||||
test_resources:
|
||||
- type: "bash_script"
|
||||
path: "test.sh"
|
||||
is_executable: true
|
||||
info: null
|
||||
status: "enabled"
|
||||
scope:
|
||||
image: "public"
|
||||
target: "public"
|
||||
requirements:
|
||||
commands:
|
||||
- "ps"
|
||||
license: "MIT"
|
||||
links:
|
||||
repository: "https://github.com/viash-hub/craftbox"
|
||||
runners:
|
||||
- type: "executable"
|
||||
id: "executable"
|
||||
docker_setup_strategy: "ifneedbepullelsecachedbuild"
|
||||
- type: "nextflow"
|
||||
id: "nextflow"
|
||||
directives:
|
||||
tag: "$id"
|
||||
auto:
|
||||
simplifyInput: true
|
||||
simplifyOutput: false
|
||||
transcript: false
|
||||
publish: false
|
||||
config:
|
||||
labels:
|
||||
mem1gb: "memory = 1000000000.B"
|
||||
mem2gb: "memory = 2000000000.B"
|
||||
mem5gb: "memory = 5000000000.B"
|
||||
mem10gb: "memory = 10000000000.B"
|
||||
mem20gb: "memory = 20000000000.B"
|
||||
mem50gb: "memory = 50000000000.B"
|
||||
mem100gb: "memory = 100000000000.B"
|
||||
mem200gb: "memory = 200000000000.B"
|
||||
mem500gb: "memory = 500000000000.B"
|
||||
mem1tb: "memory = 1000000000000.B"
|
||||
mem2tb: "memory = 2000000000000.B"
|
||||
mem5tb: "memory = 5000000000000.B"
|
||||
mem10tb: "memory = 10000000000000.B"
|
||||
mem20tb: "memory = 20000000000000.B"
|
||||
mem50tb: "memory = 50000000000000.B"
|
||||
mem100tb: "memory = 100000000000000.B"
|
||||
mem200tb: "memory = 200000000000000.B"
|
||||
mem500tb: "memory = 500000000000000.B"
|
||||
mem1gib: "memory = 1073741824.B"
|
||||
mem2gib: "memory = 2147483648.B"
|
||||
mem4gib: "memory = 4294967296.B"
|
||||
mem8gib: "memory = 8589934592.B"
|
||||
mem16gib: "memory = 17179869184.B"
|
||||
mem32gib: "memory = 34359738368.B"
|
||||
mem64gib: "memory = 68719476736.B"
|
||||
mem128gib: "memory = 137438953472.B"
|
||||
mem256gib: "memory = 274877906944.B"
|
||||
mem512gib: "memory = 549755813888.B"
|
||||
mem1tib: "memory = 1099511627776.B"
|
||||
mem2tib: "memory = 2199023255552.B"
|
||||
mem4tib: "memory = 4398046511104.B"
|
||||
mem8tib: "memory = 8796093022208.B"
|
||||
mem16tib: "memory = 17592186044416.B"
|
||||
mem32tib: "memory = 35184372088832.B"
|
||||
mem64tib: "memory = 70368744177664.B"
|
||||
mem128tib: "memory = 140737488355328.B"
|
||||
mem256tib: "memory = 281474976710656.B"
|
||||
mem512tib: "memory = 562949953421312.B"
|
||||
cpu1: "cpus = 1"
|
||||
cpu2: "cpus = 2"
|
||||
cpu5: "cpus = 5"
|
||||
cpu10: "cpus = 10"
|
||||
cpu20: "cpus = 20"
|
||||
cpu50: "cpus = 50"
|
||||
cpu100: "cpus = 100"
|
||||
cpu200: "cpus = 200"
|
||||
cpu500: "cpus = 500"
|
||||
cpu1000: "cpus = 1000"
|
||||
debug: false
|
||||
container: "docker"
|
||||
engines:
|
||||
- type: "docker"
|
||||
id: "docker"
|
||||
image: "debian:stable-slim"
|
||||
target_registry: "images.viash-hub.com"
|
||||
target_tag: "update_concat_text"
|
||||
namespace_separator: "/"
|
||||
setup:
|
||||
- type: "apt"
|
||||
packages:
|
||||
- "procps"
|
||||
interactive: false
|
||||
entrypoint: []
|
||||
cmd: null
|
||||
- type: "native"
|
||||
id: "native"
|
||||
build_info:
|
||||
config: "src/untar/config.vsh.yaml"
|
||||
runner: "executable"
|
||||
engine: "docker|native"
|
||||
output: "target/executable/untar"
|
||||
executable: "target/executable/untar/untar"
|
||||
viash_version: "0.9.4"
|
||||
git_commit: "b32ca42b4623e490b3b95f84139a0957608f9630"
|
||||
git_remote: "https://github.com/viash-hub/craftbox"
|
||||
git_tag: "v0.1.0-7-gb32ca42"
|
||||
package_config:
|
||||
name: "craftbox"
|
||||
version: "update_concat_text"
|
||||
summary: "A collection of custom-tailored scripts and applied utilities built with\
|
||||
\ Viash.\n"
|
||||
description: "`craftbox` is a curated collection of custom scripts and utilities\
|
||||
\ designed to tackle context-specific tasks.\n\nEmphasizing the Viash principles,\
|
||||
\ `craftbox` components aim for **reusability**, **reproducibility**, and adherence\
|
||||
\ to **best practices**. Key features generally include:\n\n* **Standalone & Nextflow\
|
||||
\ Ready:** Components are built to run directly via the command line or be smoothly\
|
||||
\ integrated into Nextflow workflows.\n* **Custom Implementations:** Contains\
|
||||
\ scripts and tools developed for particular tasks that may not be found in broader\
|
||||
\ collections.\n* **High Quality Standards (promoted by Viash):**\n * Clear\
|
||||
\ documentation for components and their parameters.\n * Full exposure of underlying\
|
||||
\ script/tool arguments for fine-grained control.\n * Containerized (Docker)\
|
||||
\ to ensure dependency management and a consistent, reproducible runtime environment.\n\
|
||||
\ * Unit tested where applicable to ensure components function as expected.\n"
|
||||
info: null
|
||||
viash_version: "0.9.4"
|
||||
source: "src"
|
||||
target: "target"
|
||||
config_mods:
|
||||
- ".requirements.commands := ['ps']\n"
|
||||
- ".engines += { type: \"native\" }"
|
||||
- ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
|
||||
- ".engines[.type == 'docker'].target_tag := 'update_concat_text'"
|
||||
keywords:
|
||||
- "scripts"
|
||||
- "custom"
|
||||
- "implementations"
|
||||
- "utilities"
|
||||
license: "MIT"
|
||||
organization: "vsh"
|
||||
links:
|
||||
repository: "https://github.com/viash-hub/craftbox"
|
||||
issue_tracker: "https://github.com/viash-hub/craftbox/issues"
|
||||
1172
target/executable/untar/untar
Executable file
1172
target/executable/untar/untar
Executable file
File diff suppressed because it is too large
Load Diff
Reference in New Issue
Block a user