diff --git a/CHANGELOG.md b/CHANGELOG.md index 873c100..cfce7f8 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -2,8 +2,8 @@ ## MINOR CHANGES -* `concat_text`: Allow input files to be a mixed bag of gzipped and plain text files (PR #xxx). -* `concat_text`: Stream concatenated files to gzip (PR #xxx). +* `concat_text`: Allow input files to be a mixed bag of gzipped and plain text files (PR #12). +* `concat_text`: Stream concatenated files to gzip (PR #12). # craftbox 0.2.0 diff --git a/target/executable/concat_text/.config.vsh.yaml b/target/executable/concat_text/.config.vsh.yaml index 4f1c7bc..a66b034 100644 --- a/target/executable/concat_text/.config.vsh.yaml +++ b/target/executable/concat_text/.config.vsh.yaml @@ -191,9 +191,9 @@ build_info: output: "target/executable/concat_text" executable: "target/executable/concat_text/concat_text" viash_version: "0.9.4" - git_commit: "b32ca42b4623e490b3b95f84139a0957608f9630" + git_commit: "bc2a5a1d99c9fa2657d8d351c447794107540697" git_remote: "https://github.com/viash-hub/craftbox" - git_tag: "v0.1.0-7-gb32ca42" + git_tag: "v0.1.0-8-gbc2a5a1" package_config: name: "craftbox" version: "update_concat_text" diff --git a/target/executable/concat_text/concat_text b/target/executable/concat_text/concat_text index c3e5a36..48f9d39 100755 --- a/target/executable/concat_text/concat_text +++ b/target/executable/concat_text/concat_text @@ -454,9 +454,9 @@ RUN apk add --no-cache bash procps file LABEL org.opencontainers.image.authors="Toni Verbeiren, Dries Schaumont, Robrecht Cannoodt" LABEL org.opencontainers.image.description="Companion container for running component concat_text" -LABEL org.opencontainers.image.created="2025-06-13T07:18:36Z" +LABEL org.opencontainers.image.created="2025-06-13T07:30:01Z" LABEL org.opencontainers.image.source="https://github.com/viash-hub/craftbox" -LABEL org.opencontainers.image.revision="b32ca42b4623e490b3b95f84139a0957608f9630" +LABEL org.opencontainers.image.revision="bc2a5a1d99c9fa2657d8d351c447794107540697" LABEL org.opencontainers.image.version="update_concat_text" VIASHDOCKER diff --git a/target/executable/csv2fasta/.config.vsh.yaml b/target/executable/csv2fasta/.config.vsh.yaml index 0a6c117..6253edc 100644 --- a/target/executable/csv2fasta/.config.vsh.yaml +++ b/target/executable/csv2fasta/.config.vsh.yaml @@ -257,9 +257,9 @@ build_info: output: "target/executable/csv2fasta" executable: "target/executable/csv2fasta/csv2fasta" viash_version: "0.9.4" - git_commit: "b32ca42b4623e490b3b95f84139a0957608f9630" + git_commit: "bc2a5a1d99c9fa2657d8d351c447794107540697" git_remote: "https://github.com/viash-hub/craftbox" - git_tag: "v0.1.0-7-gb32ca42" + git_tag: "v0.1.0-8-gbc2a5a1" package_config: name: "craftbox" version: "update_concat_text" diff --git a/target/executable/csv2fasta/csv2fasta b/target/executable/csv2fasta/csv2fasta index c9a99ce..decfe11 100755 --- a/target/executable/csv2fasta/csv2fasta +++ b/target/executable/csv2fasta/csv2fasta @@ -458,9 +458,9 @@ RUN pip install --upgrade pip && \ LABEL org.opencontainers.image.authors="Dries Schaumont, Robrecht Cannoodt" LABEL org.opencontainers.image.description="Companion container for running component csv2fasta" -LABEL org.opencontainers.image.created="2025-06-13T07:18:36Z" +LABEL org.opencontainers.image.created="2025-06-13T07:30:01Z" LABEL org.opencontainers.image.source="https://github.com/viash-hub/craftbox" -LABEL org.opencontainers.image.revision="b32ca42b4623e490b3b95f84139a0957608f9630" +LABEL org.opencontainers.image.revision="bc2a5a1d99c9fa2657d8d351c447794107540697" LABEL org.opencontainers.image.version="update_concat_text" VIASHDOCKER diff --git a/target/executable/move_files_to_directory/.config.vsh.yaml b/target/executable/move_files_to_directory/.config.vsh.yaml index 2dbc132..4480af8 100644 --- a/target/executable/move_files_to_directory/.config.vsh.yaml +++ b/target/executable/move_files_to_directory/.config.vsh.yaml @@ -146,9 +146,9 @@ build_info: output: "target/executable/move_files_to_directory" executable: "target/executable/move_files_to_directory/move_files_to_directory" viash_version: "0.9.4" - git_commit: "b32ca42b4623e490b3b95f84139a0957608f9630" + git_commit: "bc2a5a1d99c9fa2657d8d351c447794107540697" git_remote: "https://github.com/viash-hub/craftbox" - git_tag: "v0.1.0-7-gb32ca42" + git_tag: "v0.1.0-8-gbc2a5a1" package_config: name: "craftbox" version: "update_concat_text" diff --git a/target/executable/move_files_to_directory/move_files_to_directory b/target/executable/move_files_to_directory/move_files_to_directory index 5a62459..a471717 100755 --- a/target/executable/move_files_to_directory/move_files_to_directory +++ b/target/executable/move_files_to_directory/move_files_to_directory @@ -454,9 +454,9 @@ RUN apt-get update && \ LABEL org.opencontainers.image.authors="Dorien Roosen" LABEL org.opencontainers.image.description="Companion container for running component move_files_to_directory" -LABEL org.opencontainers.image.created="2025-06-13T07:18:35Z" +LABEL org.opencontainers.image.created="2025-06-13T07:30:01Z" LABEL org.opencontainers.image.source="https://github.com/viash-hub/craftbox" -LABEL org.opencontainers.image.revision="b32ca42b4623e490b3b95f84139a0957608f9630" +LABEL org.opencontainers.image.revision="bc2a5a1d99c9fa2657d8d351c447794107540697" LABEL org.opencontainers.image.version="update_concat_text" VIASHDOCKER diff --git a/target/executable/sync_resources/.config.vsh.yaml b/target/executable/sync_resources/.config.vsh.yaml index 2f24cb0..b5943cc 100644 --- a/target/executable/sync_resources/.config.vsh.yaml +++ b/target/executable/sync_resources/.config.vsh.yaml @@ -197,9 +197,9 @@ build_info: output: "target/executable/sync_resources" executable: "target/executable/sync_resources/sync_resources" viash_version: "0.9.4" - git_commit: "b32ca42b4623e490b3b95f84139a0957608f9630" + git_commit: "bc2a5a1d99c9fa2657d8d351c447794107540697" git_remote: "https://github.com/viash-hub/craftbox" - git_tag: "v0.1.0-7-gb32ca42" + git_tag: "v0.1.0-8-gbc2a5a1" package_config: name: "craftbox" version: "update_concat_text" diff --git a/target/executable/sync_resources/sync_resources b/target/executable/sync_resources/sync_resources index fe26d78..23f7ebc 100755 --- a/target/executable/sync_resources/sync_resources +++ b/target/executable/sync_resources/sync_resources @@ -455,9 +455,9 @@ RUN rclone config create s3 s3 anonymous=true RUN rclone config create gs gcs anonymous=true LABEL org.opencontainers.image.authors="Robrecht Cannoodt, Dries Schaumont" LABEL org.opencontainers.image.description="Companion container for running component sync_resources" -LABEL org.opencontainers.image.created="2025-06-13T07:18:36Z" +LABEL org.opencontainers.image.created="2025-06-13T07:30:01Z" LABEL org.opencontainers.image.source="https://github.com/viash-hub/craftbox" -LABEL org.opencontainers.image.revision="b32ca42b4623e490b3b95f84139a0957608f9630" +LABEL org.opencontainers.image.revision="bc2a5a1d99c9fa2657d8d351c447794107540697" LABEL org.opencontainers.image.version="update_concat_text" VIASHDOCKER diff --git a/target/executable/untar/.config.vsh.yaml b/target/executable/untar/.config.vsh.yaml index 7dbe45d..a355764 100644 --- a/target/executable/untar/.config.vsh.yaml +++ b/target/executable/untar/.config.vsh.yaml @@ -182,9 +182,9 @@ build_info: output: "target/executable/untar" executable: "target/executable/untar/untar" viash_version: "0.9.4" - git_commit: "b32ca42b4623e490b3b95f84139a0957608f9630" + git_commit: "bc2a5a1d99c9fa2657d8d351c447794107540697" git_remote: "https://github.com/viash-hub/craftbox" - git_tag: "v0.1.0-7-gb32ca42" + git_tag: "v0.1.0-8-gbc2a5a1" package_config: name: "craftbox" version: "update_concat_text" diff --git a/target/executable/untar/untar b/target/executable/untar/untar index c663fc7..5393604 100755 --- a/target/executable/untar/untar +++ b/target/executable/untar/untar @@ -455,9 +455,9 @@ RUN apt-get update && \ LABEL org.opencontainers.image.authors="Dries Schaumont, Robrecht Cannoodt" LABEL org.opencontainers.image.description="Companion container for running component untar" -LABEL org.opencontainers.image.created="2025-06-13T07:18:36Z" +LABEL org.opencontainers.image.created="2025-06-13T07:30:01Z" LABEL org.opencontainers.image.source="https://github.com/viash-hub/craftbox" -LABEL org.opencontainers.image.revision="b32ca42b4623e490b3b95f84139a0957608f9630" +LABEL org.opencontainers.image.revision="bc2a5a1d99c9fa2657d8d351c447794107540697" LABEL org.opencontainers.image.version="update_concat_text" VIASHDOCKER diff --git a/target/nextflow/concat_text/.config.vsh.yaml b/target/nextflow/concat_text/.config.vsh.yaml index 1b6707f..d37e305 100644 --- a/target/nextflow/concat_text/.config.vsh.yaml +++ b/target/nextflow/concat_text/.config.vsh.yaml @@ -191,9 +191,9 @@ build_info: output: "target/nextflow/concat_text" executable: "target/nextflow/concat_text/main.nf" viash_version: "0.9.4" - git_commit: "b32ca42b4623e490b3b95f84139a0957608f9630" + git_commit: "bc2a5a1d99c9fa2657d8d351c447794107540697" git_remote: "https://github.com/viash-hub/craftbox" - git_tag: "v0.1.0-7-gb32ca42" + git_tag: "v0.1.0-8-gbc2a5a1" package_config: name: "craftbox" version: "update_concat_text" diff --git a/target/nextflow/concat_text/main.nf b/target/nextflow/concat_text/main.nf index 7a48b8a..07e0e69 100644 --- a/target/nextflow/concat_text/main.nf +++ b/target/nextflow/concat_text/main.nf @@ -3289,9 +3289,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/concat_text", "viash_version" : "0.9.4", - "git_commit" : "b32ca42b4623e490b3b95f84139a0957608f9630", + "git_commit" : "bc2a5a1d99c9fa2657d8d351c447794107540697", "git_remote" : "https://github.com/viash-hub/craftbox", - "git_tag" : "v0.1.0-7-gb32ca42" + "git_tag" : "v0.1.0-8-gbc2a5a1" }, "package_config" : { "name" : "craftbox", diff --git a/target/nextflow/csv2fasta/.config.vsh.yaml b/target/nextflow/csv2fasta/.config.vsh.yaml index 69b5250..6723939 100644 --- a/target/nextflow/csv2fasta/.config.vsh.yaml +++ b/target/nextflow/csv2fasta/.config.vsh.yaml @@ -257,9 +257,9 @@ build_info: output: "target/nextflow/csv2fasta" executable: "target/nextflow/csv2fasta/main.nf" viash_version: "0.9.4" - git_commit: "b32ca42b4623e490b3b95f84139a0957608f9630" + git_commit: "bc2a5a1d99c9fa2657d8d351c447794107540697" git_remote: "https://github.com/viash-hub/craftbox" - git_tag: "v0.1.0-7-gb32ca42" + git_tag: "v0.1.0-8-gbc2a5a1" package_config: name: "craftbox" version: "update_concat_text" diff --git a/target/nextflow/csv2fasta/main.nf b/target/nextflow/csv2fasta/main.nf index 4f60f25..6677888 100644 --- a/target/nextflow/csv2fasta/main.nf +++ b/target/nextflow/csv2fasta/main.nf @@ -3352,9 +3352,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/csv2fasta", "viash_version" : "0.9.4", - "git_commit" : "b32ca42b4623e490b3b95f84139a0957608f9630", + "git_commit" : "bc2a5a1d99c9fa2657d8d351c447794107540697", "git_remote" : "https://github.com/viash-hub/craftbox", - "git_tag" : "v0.1.0-7-gb32ca42" + "git_tag" : "v0.1.0-8-gbc2a5a1" }, "package_config" : { "name" : "craftbox", diff --git a/target/nextflow/move_files_to_directory/.config.vsh.yaml b/target/nextflow/move_files_to_directory/.config.vsh.yaml index fc773e3..d207264 100644 --- a/target/nextflow/move_files_to_directory/.config.vsh.yaml +++ b/target/nextflow/move_files_to_directory/.config.vsh.yaml @@ -146,9 +146,9 @@ build_info: output: "target/nextflow/move_files_to_directory" executable: "target/nextflow/move_files_to_directory/main.nf" viash_version: "0.9.4" - git_commit: "b32ca42b4623e490b3b95f84139a0957608f9630" + git_commit: "bc2a5a1d99c9fa2657d8d351c447794107540697" git_remote: "https://github.com/viash-hub/craftbox" - git_tag: "v0.1.0-7-gb32ca42" + git_tag: "v0.1.0-8-gbc2a5a1" package_config: name: "craftbox" version: "update_concat_text" diff --git a/target/nextflow/move_files_to_directory/main.nf b/target/nextflow/move_files_to_directory/main.nf index f503399..4918667 100644 --- a/target/nextflow/move_files_to_directory/main.nf +++ b/target/nextflow/move_files_to_directory/main.nf @@ -3219,9 +3219,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/move_files_to_directory", "viash_version" : "0.9.4", - "git_commit" : "b32ca42b4623e490b3b95f84139a0957608f9630", + "git_commit" : "bc2a5a1d99c9fa2657d8d351c447794107540697", "git_remote" : "https://github.com/viash-hub/craftbox", - "git_tag" : "v0.1.0-7-gb32ca42" + "git_tag" : "v0.1.0-8-gbc2a5a1" }, "package_config" : { "name" : "craftbox", diff --git a/target/nextflow/sync_resources/.config.vsh.yaml b/target/nextflow/sync_resources/.config.vsh.yaml index af57a95..de5ace8 100644 --- a/target/nextflow/sync_resources/.config.vsh.yaml +++ b/target/nextflow/sync_resources/.config.vsh.yaml @@ -197,9 +197,9 @@ build_info: output: "target/nextflow/sync_resources" executable: "target/nextflow/sync_resources/main.nf" viash_version: "0.9.4" - git_commit: "b32ca42b4623e490b3b95f84139a0957608f9630" + git_commit: "bc2a5a1d99c9fa2657d8d351c447794107540697" git_remote: "https://github.com/viash-hub/craftbox" - git_tag: "v0.1.0-7-gb32ca42" + git_tag: "v0.1.0-8-gbc2a5a1" package_config: name: "craftbox" version: "update_concat_text" diff --git a/target/nextflow/sync_resources/main.nf b/target/nextflow/sync_resources/main.nf index 7d4633a..6192f08 100644 --- a/target/nextflow/sync_resources/main.nf +++ b/target/nextflow/sync_resources/main.nf @@ -3294,9 +3294,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/sync_resources", "viash_version" : "0.9.4", - "git_commit" : "b32ca42b4623e490b3b95f84139a0957608f9630", + "git_commit" : "bc2a5a1d99c9fa2657d8d351c447794107540697", "git_remote" : "https://github.com/viash-hub/craftbox", - "git_tag" : "v0.1.0-7-gb32ca42" + "git_tag" : "v0.1.0-8-gbc2a5a1" }, "package_config" : { "name" : "craftbox", diff --git a/target/nextflow/untar/.config.vsh.yaml b/target/nextflow/untar/.config.vsh.yaml index 3e3c669..ce70dea 100644 --- a/target/nextflow/untar/.config.vsh.yaml +++ b/target/nextflow/untar/.config.vsh.yaml @@ -182,9 +182,9 @@ build_info: output: "target/nextflow/untar" executable: "target/nextflow/untar/main.nf" viash_version: "0.9.4" - git_commit: "b32ca42b4623e490b3b95f84139a0957608f9630" + git_commit: "bc2a5a1d99c9fa2657d8d351c447794107540697" git_remote: "https://github.com/viash-hub/craftbox" - git_tag: "v0.1.0-7-gb32ca42" + git_tag: "v0.1.0-8-gbc2a5a1" package_config: name: "craftbox" version: "update_concat_text" diff --git a/target/nextflow/untar/main.nf b/target/nextflow/untar/main.nf index cb52ded..9060d98 100644 --- a/target/nextflow/untar/main.nf +++ b/target/nextflow/untar/main.nf @@ -3273,9 +3273,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/untar", "viash_version" : "0.9.4", - "git_commit" : "b32ca42b4623e490b3b95f84139a0957608f9630", + "git_commit" : "bc2a5a1d99c9fa2657d8d351c447794107540697", "git_remote" : "https://github.com/viash-hub/craftbox", - "git_tag" : "v0.1.0-7-gb32ca42" + "git_tag" : "v0.1.0-8-gbc2a5a1" }, "package_config" : { "name" : "craftbox",