diff --git a/CHANGELOG.md b/CHANGELOG.md index 3378d7e..b3598e5 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -4,6 +4,10 @@ * `sync_resources`: Sync a Viash package's test resources to the local filesystem (PR #7). +## BUG FIXES + +* `untar`: Fix usage of a deprecated environment variable (PR #8). + # craftbox 0.1.0 ## NEW FEATURES diff --git a/src/untar/script.sh b/src/untar/script.sh index 253ff47..d2cf252 100644 --- a/src/untar/script.sh +++ b/src/untar/script.sh @@ -4,7 +4,7 @@ set -eo pipefail extra_args=() -TMPDIR=$(mktemp -d "$meta_temp_dir/$meta_functionality_name-XXXXXX") +TMPDIR=$(mktemp -d "$meta_temp_dir/$meta_name-XXXXXX") function clean_up { [[ -d "$TMPDIR" ]] && rm -r "$TMPDIR" } diff --git a/src/untar/test.sh b/src/untar/test.sh index def7ebd..cea4b10 100644 --- a/src/untar/test.sh +++ b/src/untar/test.sh @@ -4,7 +4,7 @@ set -eo pipefail # create tempdir echo ">>> Creating temporary test directory." -TMPDIR=$(mktemp -d "$meta_temp_dir/$meta_functionality_name-XXXXXX") +TMPDIR=$(mktemp -d "$meta_temp_dir/$meta_name-XXXXXX") function clean_up { [[ -d "$TMPDIR" ]] && rm -r "$TMPDIR" } diff --git a/target/executable/concat_text/.config.vsh.yaml b/target/executable/concat_text/.config.vsh.yaml index dfba955..3a5ced8 100644 --- a/target/executable/concat_text/.config.vsh.yaml +++ b/target/executable/concat_text/.config.vsh.yaml @@ -171,9 +171,9 @@ build_info: output: "target/executable/concat_text" executable: "target/executable/concat_text/concat_text" viash_version: "0.9.0" - git_commit: "60ef248919e5cd76b6541c2850af662b5b3b29fd" + git_commit: "3c8413009764e3a6839e3e8b038857caf7047593" git_remote: "https://github.com/viash-hub/craftbox" - git_tag: "v0.1.0-2-g60ef248" + git_tag: "v0.1.0-3-g3c84130" package_config: name: "craftbox" version: "main" diff --git a/target/executable/concat_text/concat_text b/target/executable/concat_text/concat_text index d309a8c..4123046 100755 --- a/target/executable/concat_text/concat_text +++ b/target/executable/concat_text/concat_text @@ -479,9 +479,9 @@ RUN apk add --no-cache bash procps file LABEL org.opencontainers.image.authors="Toni Verbeiren, Dries Schaumont" LABEL org.opencontainers.image.description="Companion container for running component concat_text" -LABEL org.opencontainers.image.created="2025-04-08T07:02:16Z" +LABEL org.opencontainers.image.created="2025-04-08T07:25:22Z" LABEL org.opencontainers.image.source="https://github.com/viash-hub/craftbox" -LABEL org.opencontainers.image.revision="60ef248919e5cd76b6541c2850af662b5b3b29fd" +LABEL org.opencontainers.image.revision="3c8413009764e3a6839e3e8b038857caf7047593" LABEL org.opencontainers.image.version="main" VIASHDOCKER diff --git a/target/executable/csv2fasta/.config.vsh.yaml b/target/executable/csv2fasta/.config.vsh.yaml index 6c76bde..c5adb34 100644 --- a/target/executable/csv2fasta/.config.vsh.yaml +++ b/target/executable/csv2fasta/.config.vsh.yaml @@ -222,9 +222,9 @@ build_info: output: "target/executable/csv2fasta" executable: "target/executable/csv2fasta/csv2fasta" viash_version: "0.9.0" - git_commit: "60ef248919e5cd76b6541c2850af662b5b3b29fd" + git_commit: "3c8413009764e3a6839e3e8b038857caf7047593" git_remote: "https://github.com/viash-hub/craftbox" - git_tag: "v0.1.0-2-g60ef248" + git_tag: "v0.1.0-3-g3c84130" package_config: name: "craftbox" version: "main" diff --git a/target/executable/csv2fasta/csv2fasta b/target/executable/csv2fasta/csv2fasta index 8712b96..ea485d5 100755 --- a/target/executable/csv2fasta/csv2fasta +++ b/target/executable/csv2fasta/csv2fasta @@ -525,9 +525,9 @@ RUN pip install --upgrade pip && \ pip install --upgrade --no-cache-dir "dnaio" LABEL org.opencontainers.image.description="Companion container for running component csv2fasta" -LABEL org.opencontainers.image.created="2025-04-08T07:02:16Z" +LABEL org.opencontainers.image.created="2025-04-08T07:25:22Z" LABEL org.opencontainers.image.source="https://github.com/viash-hub/craftbox" -LABEL org.opencontainers.image.revision="60ef248919e5cd76b6541c2850af662b5b3b29fd" +LABEL org.opencontainers.image.revision="3c8413009764e3a6839e3e8b038857caf7047593" LABEL org.opencontainers.image.version="main" VIASHDOCKER diff --git a/target/executable/sync_resources/.config.vsh.yaml b/target/executable/sync_resources/.config.vsh.yaml index 192c4ae..72f6dc3 100644 --- a/target/executable/sync_resources/.config.vsh.yaml +++ b/target/executable/sync_resources/.config.vsh.yaml @@ -160,9 +160,9 @@ build_info: output: "target/executable/sync_resources" executable: "target/executable/sync_resources/sync_resources" viash_version: "0.9.0" - git_commit: "60ef248919e5cd76b6541c2850af662b5b3b29fd" + git_commit: "3c8413009764e3a6839e3e8b038857caf7047593" git_remote: "https://github.com/viash-hub/craftbox" - git_tag: "v0.1.0-2-g60ef248" + git_tag: "v0.1.0-3-g3c84130" package_config: name: "craftbox" version: "main" diff --git a/target/executable/sync_resources/sync_resources b/target/executable/sync_resources/sync_resources index 69aeaec..efa91a4 100755 --- a/target/executable/sync_resources/sync_resources +++ b/target/executable/sync_resources/sync_resources @@ -482,9 +482,9 @@ RUN apk add --no-cache bash rclone yq RUN rclone config create s3 s3 anonymous=true RUN rclone config create gs gcs anonymous=true LABEL org.opencontainers.image.description="Companion container for running component sync_resources" -LABEL org.opencontainers.image.created="2025-04-08T07:02:16Z" +LABEL org.opencontainers.image.created="2025-04-08T07:25:22Z" LABEL org.opencontainers.image.source="https://github.com/viash-hub/craftbox" -LABEL org.opencontainers.image.revision="60ef248919e5cd76b6541c2850af662b5b3b29fd" +LABEL org.opencontainers.image.revision="3c8413009764e3a6839e3e8b038857caf7047593" LABEL org.opencontainers.image.version="main" VIASHDOCKER diff --git a/target/executable/untar/.config.vsh.yaml b/target/executable/untar/.config.vsh.yaml index 2125a9d..40493c7 100644 --- a/target/executable/untar/.config.vsh.yaml +++ b/target/executable/untar/.config.vsh.yaml @@ -147,9 +147,9 @@ build_info: output: "target/executable/untar" executable: "target/executable/untar/untar" viash_version: "0.9.0" - git_commit: "60ef248919e5cd76b6541c2850af662b5b3b29fd" + git_commit: "3c8413009764e3a6839e3e8b038857caf7047593" git_remote: "https://github.com/viash-hub/craftbox" - git_tag: "v0.1.0-2-g60ef248" + git_tag: "v0.1.0-3-g3c84130" package_config: name: "craftbox" version: "main" diff --git a/target/executable/untar/untar b/target/executable/untar/untar index 012ed8d..c5f2684 100755 --- a/target/executable/untar/untar +++ b/target/executable/untar/untar @@ -476,9 +476,9 @@ RUN apt-get update && \ rm -rf /var/lib/apt/lists/* LABEL org.opencontainers.image.description="Companion container for running component untar" -LABEL org.opencontainers.image.created="2025-04-08T07:02:16Z" +LABEL org.opencontainers.image.created="2025-04-08T07:25:22Z" LABEL org.opencontainers.image.source="https://github.com/viash-hub/craftbox" -LABEL org.opencontainers.image.revision="60ef248919e5cd76b6541c2850af662b5b3b29fd" +LABEL org.opencontainers.image.revision="3c8413009764e3a6839e3e8b038857caf7047593" LABEL org.opencontainers.image.version="main" VIASHDOCKER @@ -1066,7 +1066,7 @@ set -eo pipefail extra_args=() -TMPDIR=\$(mktemp -d "\$meta_temp_dir/\$meta_functionality_name-XXXXXX") +TMPDIR=\$(mktemp -d "\$meta_temp_dir/\$meta_name-XXXXXX") function clean_up { [[ -d "\$TMPDIR" ]] && rm -r "\$TMPDIR" } diff --git a/target/nextflow/concat_text/.config.vsh.yaml b/target/nextflow/concat_text/.config.vsh.yaml index c41b071..1bf5f60 100644 --- a/target/nextflow/concat_text/.config.vsh.yaml +++ b/target/nextflow/concat_text/.config.vsh.yaml @@ -171,9 +171,9 @@ build_info: output: "target/nextflow/concat_text" executable: "target/nextflow/concat_text/main.nf" viash_version: "0.9.0" - git_commit: "60ef248919e5cd76b6541c2850af662b5b3b29fd" + git_commit: "3c8413009764e3a6839e3e8b038857caf7047593" git_remote: "https://github.com/viash-hub/craftbox" - git_tag: "v0.1.0-2-g60ef248" + git_tag: "v0.1.0-3-g3c84130" package_config: name: "craftbox" version: "main" diff --git a/target/nextflow/concat_text/main.nf b/target/nextflow/concat_text/main.nf index 63bef23..e3319d6 100644 --- a/target/nextflow/concat_text/main.nf +++ b/target/nextflow/concat_text/main.nf @@ -3031,9 +3031,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/concat_text", "viash_version" : "0.9.0", - "git_commit" : "60ef248919e5cd76b6541c2850af662b5b3b29fd", + "git_commit" : "3c8413009764e3a6839e3e8b038857caf7047593", "git_remote" : "https://github.com/viash-hub/craftbox", - "git_tag" : "v0.1.0-2-g60ef248" + "git_tag" : "v0.1.0-3-g3c84130" }, "package_config" : { "name" : "craftbox", diff --git a/target/nextflow/csv2fasta/.config.vsh.yaml b/target/nextflow/csv2fasta/.config.vsh.yaml index 9125913..8c5d1a2 100644 --- a/target/nextflow/csv2fasta/.config.vsh.yaml +++ b/target/nextflow/csv2fasta/.config.vsh.yaml @@ -222,9 +222,9 @@ build_info: output: "target/nextflow/csv2fasta" executable: "target/nextflow/csv2fasta/main.nf" viash_version: "0.9.0" - git_commit: "60ef248919e5cd76b6541c2850af662b5b3b29fd" + git_commit: "3c8413009764e3a6839e3e8b038857caf7047593" git_remote: "https://github.com/viash-hub/craftbox" - git_tag: "v0.1.0-2-g60ef248" + git_tag: "v0.1.0-3-g3c84130" package_config: name: "craftbox" version: "main" diff --git a/target/nextflow/csv2fasta/main.nf b/target/nextflow/csv2fasta/main.nf index 48cfa1d..f77f8c1 100644 --- a/target/nextflow/csv2fasta/main.nf +++ b/target/nextflow/csv2fasta/main.nf @@ -3067,9 +3067,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/csv2fasta", "viash_version" : "0.9.0", - "git_commit" : "60ef248919e5cd76b6541c2850af662b5b3b29fd", + "git_commit" : "3c8413009764e3a6839e3e8b038857caf7047593", "git_remote" : "https://github.com/viash-hub/craftbox", - "git_tag" : "v0.1.0-2-g60ef248" + "git_tag" : "v0.1.0-3-g3c84130" }, "package_config" : { "name" : "craftbox", diff --git a/target/nextflow/sync_resources/.config.vsh.yaml b/target/nextflow/sync_resources/.config.vsh.yaml index a959533..d71d0b3 100644 --- a/target/nextflow/sync_resources/.config.vsh.yaml +++ b/target/nextflow/sync_resources/.config.vsh.yaml @@ -160,9 +160,9 @@ build_info: output: "target/nextflow/sync_resources" executable: "target/nextflow/sync_resources/main.nf" viash_version: "0.9.0" - git_commit: "60ef248919e5cd76b6541c2850af662b5b3b29fd" + git_commit: "3c8413009764e3a6839e3e8b038857caf7047593" git_remote: "https://github.com/viash-hub/craftbox" - git_tag: "v0.1.0-2-g60ef248" + git_tag: "v0.1.0-3-g3c84130" package_config: name: "craftbox" version: "main" diff --git a/target/nextflow/sync_resources/main.nf b/target/nextflow/sync_resources/main.nf index 231fe33..95e0db9 100644 --- a/target/nextflow/sync_resources/main.nf +++ b/target/nextflow/sync_resources/main.nf @@ -3009,9 +3009,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/sync_resources", "viash_version" : "0.9.0", - "git_commit" : "60ef248919e5cd76b6541c2850af662b5b3b29fd", + "git_commit" : "3c8413009764e3a6839e3e8b038857caf7047593", "git_remote" : "https://github.com/viash-hub/craftbox", - "git_tag" : "v0.1.0-2-g60ef248" + "git_tag" : "v0.1.0-3-g3c84130" }, "package_config" : { "name" : "craftbox", diff --git a/target/nextflow/untar/.config.vsh.yaml b/target/nextflow/untar/.config.vsh.yaml index 6d99957..23ac15f 100644 --- a/target/nextflow/untar/.config.vsh.yaml +++ b/target/nextflow/untar/.config.vsh.yaml @@ -147,9 +147,9 @@ build_info: output: "target/nextflow/untar" executable: "target/nextflow/untar/main.nf" viash_version: "0.9.0" - git_commit: "60ef248919e5cd76b6541c2850af662b5b3b29fd" + git_commit: "3c8413009764e3a6839e3e8b038857caf7047593" git_remote: "https://github.com/viash-hub/craftbox" - git_tag: "v0.1.0-2-g60ef248" + git_tag: "v0.1.0-3-g3c84130" package_config: name: "craftbox" version: "main" diff --git a/target/nextflow/untar/main.nf b/target/nextflow/untar/main.nf index 1928215..415c3d4 100644 --- a/target/nextflow/untar/main.nf +++ b/target/nextflow/untar/main.nf @@ -2988,9 +2988,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/untar", "viash_version" : "0.9.0", - "git_commit" : "60ef248919e5cd76b6541c2850af662b5b3b29fd", + "git_commit" : "3c8413009764e3a6839e3e8b038857caf7047593", "git_remote" : "https://github.com/viash-hub/craftbox", - "git_tag" : "v0.1.0-2-g60ef248" + "git_tag" : "v0.1.0-3-g3c84130" }, "package_config" : { "name" : "craftbox", @@ -3060,7 +3060,7 @@ set -eo pipefail extra_args=() -TMPDIR=\\$(mktemp -d "\\$meta_temp_dir/\\$meta_functionality_name-XXXXXX") +TMPDIR=\\$(mktemp -d "\\$meta_temp_dir/\\$meta_name-XXXXXX") function clean_up { [[ -d "\\$TMPDIR" ]] && rm -r "\\$TMPDIR" }