Build branch craftbox/v0.3 with version v0.3.1 to craftbox on branch v0.3 (4acf73e)

Build pipeline: viash-hub.craftbox.v0.3.1-6qf24 Source commit: 4acf73e025 Source message: Bump version to v0.3.1
2025-11-20 15:23:55 +00:00
parent 468e52234c
commit 6c59599998
39 changed files with 488 additions and 313 deletions
--- a/target/executable/check_disk_space/.config.vsh.yaml
+++ b/target/executable/check_disk_space/.config.vsh.yaml
@@ -1,5 +1,5 @@
 name: "check_disk_space"
-version: "v0.3.0"
+version: "v0.3.1"
 argument_groups:
 - name: "Inputs"
  arguments:
@@ -144,7 +144,7 @@ engines:
  id: "docker"
  image: "bash:latest"
  target_registry: "images.viash-hub.com"
-  target_tag: "v0.3.0"
+  target_tag: "v0.3.1"
  namespace_separator: "/"
  entrypoint: []
  cmd: null
@@ -157,12 +157,11 @@ build_info:
  output: "target/executable/check_disk_space"
  executable: "target/executable/check_disk_space/check_disk_space"
  viash_version: "0.9.4"
-  git_commit: "a1801c5139bbcda244e06affa66d16f7abd5e124"
+  git_commit: "4acf73e0255554766186f4016986782c0d25c309"
  git_remote: "https://github.com/viash-hub/craftbox"
-  git_tag: "v0.1.0-11-ga1801c5"
 package_config:
  name: "craftbox"
-  version: "v0.3.0"
+  version: "v0.3.1"
  summary: "A collection of custom-tailored scripts and applied utilities built with\
    \ Viash.\n"
  description: "`craftbox` is a curated collection of custom scripts and utilities\
@@ -185,7 +184,7 @@ package_config:
  - ".requirements.commands := ['ps']\n"
  - ".engines += { type: \"native\" }"
  - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
-  - ".engines[.type == 'docker'].target_tag := 'v0.3.0'"
+  - ".engines[.type == 'docker'].target_tag := 'v0.3.1'"
  keywords:
  - "scripts"
  - "custom"
--- a/target/executable/check_disk_space/check_disk_space
+++ b/target/executable/check_disk_space/check_disk_space
@@ -1,6 +1,6 @@
 #!/usr/bin/env bash

-# check_disk_space v0.3.0
+# check_disk_space v0.3.1
 # 
 # This wrapper script is auto-generated by viash 0.9.4 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -446,10 +446,10 @@ function ViashDockerfile {
 FROM bash:latest
 ENTRYPOINT []
 LABEL org.opencontainers.image.description="Companion container for running component check_disk_space"
-LABEL org.opencontainers.image.created="2025-08-28T13:48:17Z"
+LABEL org.opencontainers.image.created="2025-11-20T15:16:24Z"
 LABEL org.opencontainers.image.source="https://github.com/viash-hub/craftbox"
-LABEL org.opencontainers.image.revision="a1801c5139bbcda244e06affa66d16f7abd5e124"
-LABEL org.opencontainers.image.version="v0.3.0"
+LABEL org.opencontainers.image.revision="4acf73e0255554766186f4016986782c0d25c309"
+LABEL org.opencontainers.image.version="v0.3.1"

 VIASHDOCKER
  fi
@@ -566,7 +566,7 @@ VIASH_DOCKER_RUN_ARGS=(-i --rm)

 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "check_disk_space v0.3.0"
+  echo "check_disk_space v0.3.1"
  echo ""
  echo "Check for available disk space on the system."
  echo ""
@@ -648,7 +648,7 @@ while [[ $# -gt 0 ]]; do
            shift 1
            ;;
        --version)
-            echo "check_disk_space v0.3.0"
+            echo "check_disk_space v0.3.1"
            exit
            ;;
        --tmp_space_required)
@@ -783,7 +783,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then

  # determine docker image id
  if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then
-    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/craftbox/check_disk_space:v0.3.0'
+    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/craftbox/check_disk_space:v0.3.1'
  fi

  # print dockerfile
--- a/target/executable/concat_text/.config.vsh.yaml
+++ b/target/executable/concat_text/.config.vsh.yaml
@@ -1,5 +1,5 @@
 name: "concat_text"
-version: "v0.3.0"
+version: "v0.3.1"
 authors:
 - name: "Toni Verbeiren"
  roles:
@@ -26,6 +26,22 @@ authors:
    - name: "Data Intuitive"
      href: "https://www.data-intuitive.com"
      role: "Data Scientist"
+- name: "Robrecht Cannoodt"
+  roles:
+  - "contributor"
+  info:
+    links:
+      email: "robrecht@data-intuitive.com"
+      github: "rcannood"
+      orcid: "0000-0003-3641-729X"
+      linkedin: "robrechtcannoodt"
+    organizations:
+    - name: "Data Intuitive"
+      href: "https://www.data-intuitive.com"
+      role: "Data Science Engineer"
+    - name: "Open Problems"
+      href: "https://openproblems.bio"
+      role: "Core Member"
 argument_groups:
 - name: "Input arguments"
  arguments:
@@ -34,7 +50,7 @@ argument_groups:
    description: "A list of (gzipped) text files."
    info: null
    example:
-    - "input?.txt.gz"
+    - "input.txt.gz"
    must_exist: true
    create_parent: true
    required: true
@@ -50,7 +66,7 @@ argument_groups:
    direction: "input"
  - type: "file"
    name: "--output"
-    description: "File to write the output to, optionally gzipped."
+    description: "File to write the output to, potentially gzipped."
    info: null
    example:
    - "output.txt"
@@ -64,7 +80,7 @@ resources:
 - type: "bash_script"
  path: "script.sh"
  is_executable: true
-summary: "Concatenate a number of text files"
+summary: "Concatenate multiple (possibly gzipped) text files"
 description: "Concatenate a number of text files, handle gzipped text files gracefully\
  \ and\noptionally gzip the output text file.\n\nThis component is useful for concatening\
  \ fastq files from different lanes, for instance.\n"
@@ -73,9 +89,8 @@ test_resources:
  path: "test.sh"
  is_executable: true
 info:
-  improvements: "This component could be improved in 2 ways:\n  1. Allow for a mix\
-    \ of zipped and plain input files\n  2. Allow to specify a compression algorithm\
-    \ for the output\n"
+  improvements: "This component could be improved:\n  1. Allow to specify a compression\
+    \ algorithm for the output\n"
 status: "enabled"
 scope:
  image: "public"
@@ -156,7 +171,7 @@ engines:
  id: "docker"
  image: "alpine:latest"
  target_registry: "images.viash-hub.com"
-  target_tag: "v0.3.0"
+  target_tag: "v0.3.1"
  namespace_separator: "/"
  setup:
  - type: "apk"
@@ -175,12 +190,11 @@ build_info:
  output: "target/executable/concat_text"
  executable: "target/executable/concat_text/concat_text"
  viash_version: "0.9.4"
-  git_commit: "a1801c5139bbcda244e06affa66d16f7abd5e124"
+  git_commit: "4acf73e0255554766186f4016986782c0d25c309"
  git_remote: "https://github.com/viash-hub/craftbox"
-  git_tag: "v0.1.0-11-ga1801c5"
 package_config:
  name: "craftbox"
-  version: "v0.3.0"
+  version: "v0.3.1"
  summary: "A collection of custom-tailored scripts and applied utilities built with\
    \ Viash.\n"
  description: "`craftbox` is a curated collection of custom scripts and utilities\
@@ -203,7 +217,7 @@ package_config:
  - ".requirements.commands := ['ps']\n"
  - ".engines += { type: \"native\" }"
  - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
-  - ".engines[.type == 'docker'].target_tag := 'v0.3.0'"
+  - ".engines[.type == 'docker'].target_tag := 'v0.3.1'"
  keywords:
  - "scripts"
  - "custom"
--- a/target/executable/concat_text/concat_text
+++ b/target/executable/concat_text/concat_text
@@ -1,6 +1,6 @@
 #!/usr/bin/env bash

-# concat_text v0.3.0
+# concat_text v0.3.1
 # 
 # This wrapper script is auto-generated by viash 0.9.4 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -14,6 +14,7 @@
 # Component authors:
 #  * Toni Verbeiren (author, maintainer)
 #  * Dries Schaumont (reviewer)
+#  * Robrecht Cannoodt (contributor)

 set -e

@@ -451,12 +452,12 @@ FROM alpine:latest
 ENTRYPOINT []
 RUN apk add --no-cache bash procps file

-LABEL org.opencontainers.image.authors="Toni Verbeiren, Dries Schaumont"
+LABEL org.opencontainers.image.authors="Toni Verbeiren, Dries Schaumont, Robrecht Cannoodt"
 LABEL org.opencontainers.image.description="Companion container for running component concat_text"
-LABEL org.opencontainers.image.created="2025-08-28T13:48:17Z"
+LABEL org.opencontainers.image.created="2025-11-20T15:16:24Z"
 LABEL org.opencontainers.image.source="https://github.com/viash-hub/craftbox"
-LABEL org.opencontainers.image.revision="a1801c5139bbcda244e06affa66d16f7abd5e124"
-LABEL org.opencontainers.image.version="v0.3.0"
+LABEL org.opencontainers.image.revision="4acf73e0255554766186f4016986782c0d25c309"
+LABEL org.opencontainers.image.version="v0.3.1"

 VIASHDOCKER
  fi
@@ -573,7 +574,7 @@ VIASH_DOCKER_RUN_ARGS=(-i --rm)

 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "concat_text v0.3.0"
+  echo "concat_text v0.3.1"
  echo ""
  echo "Concatenate a number of text files, handle gzipped text files gracefully and"
  echo "optionally gzip the output text file."
@@ -584,7 +585,7 @@ function ViashHelp {
  echo "Input arguments:"
  echo "    --input"
  echo "        type: file, required parameter, multiple values allowed, file must exist"
-  echo "        example: input?.txt.gz"
+  echo "        example: input.txt.gz"
  echo "        A list of (gzipped) text files."
  echo ""
  echo "Output arguments:"
@@ -595,7 +596,7 @@ function ViashHelp {
  echo "    --output"
  echo "        type: file, output, file must exist"
  echo "        example: output.txt"
-  echo "        File to write the output to, optionally gzipped."
+  echo "        File to write the output to, potentially gzipped."
  echo ""
  echo "Viash built in Computational Requirements:"
  echo "    ---cpus=INT"
@@ -644,7 +645,7 @@ while [[ $# -gt 0 ]]; do
            shift 1
            ;;
        --version)
-            echo "concat_text v0.3.0"
+            echo "concat_text v0.3.1"
            exit
            ;;
        --input)
@@ -768,7 +769,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then

  # determine docker image id
  if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then
-    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/craftbox/concat_text:v0.3.0'
+    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/craftbox/concat_text:v0.3.1'
  fi

  # print dockerfile
@@ -1080,6 +1081,10 @@ function interrupt {
 trap clean_up EXIT
 trap interrupt INT SIGINT
 cat > "\$tempscript" << 'VIASHMAIN'
+#!/usr/bin/env bash
+
+set -eo pipefail
+
 ## VIASH START
 # The following code has been auto-generated by Viash.
 $( if [ ! -z ${VIASH_PAR_INPUT+x} ]; then echo "${VIASH_PAR_INPUT}" | sed "s#'#'\"'\"'#g;s#.*#par_input='&'#" ; else echo "# par_input="; fi )
@@ -1105,40 +1110,62 @@ $( if [ ! -z ${VIASH_META_MEMORY_TIB+x} ]; then echo "${VIASH_META_MEMORY_TIB}"
 $( if [ ! -z ${VIASH_META_MEMORY_PIB+x} ]; then echo "${VIASH_META_MEMORY_PIB}" | sed "s#'#'\"'\"'#g;s#.*#meta_memory_pib='&'#" ; else echo "# meta_memory_pib="; fi )

 ## VIASH END
-#!/usr/bin/env bash

-set -euo pipefail
-
-TMPDIR=\$(mktemp -d "\$meta_temp_dir/concat_text-XXXXXX")
-function clean_up {
-  [[ -d "\$TMPDIR" ]] && rm -r "\$TMPDIR"
+# --- Function to check for GZIP format using the 'file' command ---
+is_gzipped() {
+    # Ensure the file exists and is not empty before checking
+    if [ ! -s "\$1" ]; then
+        return 1
+    fi
+    # Get the MIME type of the file. The '-b' option omits the filename from the output.
+    local mime_type
+    mime_type=\$(file -b --mime-type "\$1")
+    
+    # Check if the MIME type corresponds to gzip.
+    # application/gzip is standard, while application/x-gzip is also commonly seen.
+    if [[ "\$mime_type" == "application/gzip" || "\$mime_type" == "application/x-gzip" ]]; then
+        return 0 # 0 indicates success (true in bash)
+    else
+        return 1 # 1 indicates failure (false in bash)
+    fi
 }
-trap clean_up EXIT

-par_input="\$(echo "\$par_input" | tr ';' ' ')"
+# Read the ;-separated file paths from the input variable into an array
+IFS=";" read -ra input_files <<< "\$par_input"

-echo -n ">> Check if input is gzipped... "
-set +eo pipefail
-file \$par_input | grep -q 'gzip'
-is_zipped="\$?"
-set -euo pipefail
-[[ "\$is_zipped" == "0" ]] && echo "yes" || echo "no"
+# Process the files if the array contains any paths
+if [ \${#input_files[@]} -gt 0 ] && [ -n "\${input_files[0]}" ]; then

-if [[ "\$is_zipped" == "0" ]]; then
-  echo ">> zcat gzipped files"
-  zcat \$par_input > \$TMPDIR/contents
+    # Ensure the output file is empty before we start
+    > "\$par_output"
+
+    echo "Processing files for -> \$par_output"
+
+    # Create a subshell for the loop to group all cat/zcat output.
+    (
+        for file in "\${input_files[@]}"; do
+            if [ -z "\$file" ]; then continue; fi # Skip empty entries in the array
+
+            if is_gzipped "\$file"; then
+                zcat "\$file"
+            else
+                cat "\$file"
+            fi
+        done
+    ) | if [ "\$par_compress_output" = "true" ]; then
+        # If compression is enabled, pipe the entire stream to gzip
+        gzip -c >> "\$par_output"
+    else
+        # Otherwise, just redirect the stream to the plain text file
+        cat >> "\$par_output"
+    fi
+
+    echo "Finished creating \$par_output."
 else
-  echo ">> cat plain files"
-  cat \$par_input > \$TMPDIR/contents
+    echo "No input files provided in \\\$par_input. Exiting."
 fi

-if [ "\$par_gzip_output" == true ]; then
-  echo ">> Zip output file"
-  gzip \$TMPDIR/contents
-  mv \$TMPDIR/contents.gz \$par_output
-else
-  mv \$TMPDIR/contents \$par_output
-fi
+echo "Script finished successfully."
 VIASHMAIN
 bash "\$tempscript" &
 wait "\$!"
--- a/target/executable/csv2fasta/.config.vsh.yaml
+++ b/target/executable/csv2fasta/.config.vsh.yaml
@@ -1,5 +1,5 @@
 name: "csv2fasta"
-version: "v0.3.0"
+version: "v0.3.1"
 authors:
 - name: "Dries Schaumont"
  roles:
@@ -227,7 +227,7 @@ engines:
  id: "docker"
  image: "python:slim"
  target_registry: "images.viash-hub.com"
-  target_tag: "v0.3.0"
+  target_tag: "v0.3.1"
  namespace_separator: "/"
  setup:
  - type: "apt"
@@ -257,12 +257,11 @@ build_info:
  output: "target/executable/csv2fasta"
  executable: "target/executable/csv2fasta/csv2fasta"
  viash_version: "0.9.4"
-  git_commit: "a1801c5139bbcda244e06affa66d16f7abd5e124"
+  git_commit: "4acf73e0255554766186f4016986782c0d25c309"
  git_remote: "https://github.com/viash-hub/craftbox"
-  git_tag: "v0.1.0-11-ga1801c5"
 package_config:
  name: "craftbox"
-  version: "v0.3.0"
+  version: "v0.3.1"
  summary: "A collection of custom-tailored scripts and applied utilities built with\
    \ Viash.\n"
  description: "`craftbox` is a curated collection of custom scripts and utilities\
@@ -285,7 +284,7 @@ package_config:
  - ".requirements.commands := ['ps']\n"
  - ".engines += { type: \"native\" }"
  - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
-  - ".engines[.type == 'docker'].target_tag := 'v0.3.0'"
+  - ".engines[.type == 'docker'].target_tag := 'v0.3.1'"
  keywords:
  - "scripts"
  - "custom"
--- a/target/executable/csv2fasta/csv2fasta
+++ b/target/executable/csv2fasta/csv2fasta
@@ -1,6 +1,6 @@
 #!/usr/bin/env bash

-# csv2fasta v0.3.0
+# csv2fasta v0.3.1
 # 
 # This wrapper script is auto-generated by viash 0.9.4 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -458,10 +458,10 @@ RUN pip install --upgrade pip && \

 LABEL org.opencontainers.image.authors="Dries Schaumont, Robrecht Cannoodt"
 LABEL org.opencontainers.image.description="Companion container for running component csv2fasta"
-LABEL org.opencontainers.image.created="2025-08-28T13:48:17Z"
+LABEL org.opencontainers.image.created="2025-11-20T15:16:24Z"
 LABEL org.opencontainers.image.source="https://github.com/viash-hub/craftbox"
-LABEL org.opencontainers.image.revision="a1801c5139bbcda244e06affa66d16f7abd5e124"
-LABEL org.opencontainers.image.version="v0.3.0"
+LABEL org.opencontainers.image.revision="4acf73e0255554766186f4016986782c0d25c309"
+LABEL org.opencontainers.image.version="v0.3.1"

 VIASHDOCKER
  fi
@@ -578,7 +578,7 @@ VIASH_DOCKER_RUN_ARGS=(-i --rm)

 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "csv2fasta v0.3.0"
+  echo "csv2fasta v0.3.1"
  echo ""
  echo "Convert two columns from a CSV file to FASTA entries. The CSV file can"
  echo "contain an optional header and each row (other than the header) becomes"
@@ -695,7 +695,7 @@ while [[ $# -gt 0 ]]; do
            shift 1
            ;;
        --version)
-            echo "csv2fasta v0.3.0"
+            echo "csv2fasta v0.3.1"
            exit
            ;;
        --input)
@@ -879,7 +879,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then

  # determine docker image id
  if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then
-    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/craftbox/csv2fasta:v0.3.0'
+    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/craftbox/csv2fasta:v0.3.1'
  fi

  # print dockerfile
--- a/target/executable/move_files_to_directory/.config.vsh.yaml
+++ b/target/executable/move_files_to_directory/.config.vsh.yaml
@@ -1,5 +1,5 @@
 name: "move_files_to_directory"
-version: "v0.3.0"
+version: "v0.3.1"
 authors:
 - name: "Dorien Roosen"
  roles:
@@ -135,7 +135,7 @@ engines:
  id: "docker"
  image: "debian:latest"
  target_registry: "images.viash-hub.com"
-  target_tag: "v0.3.0"
+  target_tag: "v0.3.1"
  namespace_separator: "/"
  setup:
  - type: "apt"
@@ -153,12 +153,11 @@ build_info:
  output: "target/executable/move_files_to_directory"
  executable: "target/executable/move_files_to_directory/move_files_to_directory"
  viash_version: "0.9.4"
-  git_commit: "a1801c5139bbcda244e06affa66d16f7abd5e124"
+  git_commit: "4acf73e0255554766186f4016986782c0d25c309"
  git_remote: "https://github.com/viash-hub/craftbox"
-  git_tag: "v0.1.0-11-ga1801c5"
 package_config:
  name: "craftbox"
-  version: "v0.3.0"
+  version: "v0.3.1"
  summary: "A collection of custom-tailored scripts and applied utilities built with\
    \ Viash.\n"
  description: "`craftbox` is a curated collection of custom scripts and utilities\
@@ -181,7 +180,7 @@ package_config:
  - ".requirements.commands := ['ps']\n"
  - ".engines += { type: \"native\" }"
  - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
-  - ".engines[.type == 'docker'].target_tag := 'v0.3.0'"
+  - ".engines[.type == 'docker'].target_tag := 'v0.3.1'"
  keywords:
  - "scripts"
  - "custom"
--- a/target/executable/move_files_to_directory/move_files_to_directory
+++ b/target/executable/move_files_to_directory/move_files_to_directory
@@ -1,6 +1,6 @@
 #!/usr/bin/env bash

-# move_files_to_directory v0.3.0
+# move_files_to_directory v0.3.1
 # 
 # This wrapper script is auto-generated by viash 0.9.4 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -454,10 +454,10 @@ RUN apt-get update && \

 LABEL org.opencontainers.image.authors="Dorien Roosen"
 LABEL org.opencontainers.image.description="Companion container for running component move_files_to_directory"
-LABEL org.opencontainers.image.created="2025-08-28T13:48:17Z"
+LABEL org.opencontainers.image.created="2025-11-20T15:16:24Z"
 LABEL org.opencontainers.image.source="https://github.com/viash-hub/craftbox"
-LABEL org.opencontainers.image.revision="a1801c5139bbcda244e06affa66d16f7abd5e124"
-LABEL org.opencontainers.image.version="v0.3.0"
+LABEL org.opencontainers.image.revision="4acf73e0255554766186f4016986782c0d25c309"
+LABEL org.opencontainers.image.version="v0.3.1"

 VIASHDOCKER
  fi
@@ -574,7 +574,7 @@ VIASH_DOCKER_RUN_ARGS=(-i --rm)

 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "move_files_to_directory v0.3.0"
+  echo "move_files_to_directory v0.3.1"
  echo ""
  echo "This component copies one or multiple files to the same destination directory,"
  echo "creating the output directory if it doesn't exist."
@@ -639,7 +639,7 @@ while [[ $# -gt 0 ]]; do
            shift 1
            ;;
        --version)
-            echo "move_files_to_directory v0.3.0"
+            echo "move_files_to_directory v0.3.1"
            exit
            ;;
        --input)
@@ -768,7 +768,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then

  # determine docker image id
  if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then
-    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/craftbox/move_files_to_directory:v0.3.0'
+    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/craftbox/move_files_to_directory:v0.3.1'
  fi

  # print dockerfile
--- a/target/executable/sync_resources/.config.vsh.yaml
+++ b/target/executable/sync_resources/.config.vsh.yaml
@@ -1,5 +1,5 @@
 name: "sync_resources"
-version: "v0.3.0"
+version: "v0.3.1"
 authors:
 - name: "Robrecht Cannoodt"
  roles:
@@ -174,7 +174,7 @@ engines:
  id: "docker"
  image: "alpine:3"
  target_registry: "images.viash-hub.com"
-  target_tag: "v0.3.0"
+  target_tag: "v0.3.1"
  namespace_separator: "/"
  setup:
  - type: "apk"
@@ -197,12 +197,11 @@ build_info:
  output: "target/executable/sync_resources"
  executable: "target/executable/sync_resources/sync_resources"
  viash_version: "0.9.4"
-  git_commit: "a1801c5139bbcda244e06affa66d16f7abd5e124"
+  git_commit: "4acf73e0255554766186f4016986782c0d25c309"
  git_remote: "https://github.com/viash-hub/craftbox"
-  git_tag: "v0.1.0-11-ga1801c5"
 package_config:
  name: "craftbox"
-  version: "v0.3.0"
+  version: "v0.3.1"
  summary: "A collection of custom-tailored scripts and applied utilities built with\
    \ Viash.\n"
  description: "`craftbox` is a curated collection of custom scripts and utilities\
@@ -225,7 +224,7 @@ package_config:
  - ".requirements.commands := ['ps']\n"
  - ".engines += { type: \"native\" }"
  - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
-  - ".engines[.type == 'docker'].target_tag := 'v0.3.0'"
+  - ".engines[.type == 'docker'].target_tag := 'v0.3.1'"
  keywords:
  - "scripts"
  - "custom"
--- a/target/executable/sync_resources/sync_resources
+++ b/target/executable/sync_resources/sync_resources
@@ -1,6 +1,6 @@
 #!/usr/bin/env bash

-# sync_resources v0.3.0
+# sync_resources v0.3.1
 # 
 # This wrapper script is auto-generated by viash 0.9.4 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -455,10 +455,10 @@ RUN rclone config create s3 s3 anonymous=true
 RUN rclone config create gs gcs anonymous=true
 LABEL org.opencontainers.image.authors="Robrecht Cannoodt, Dries Schaumont"
 LABEL org.opencontainers.image.description="Companion container for running component sync_resources"
-LABEL org.opencontainers.image.created="2025-08-28T13:48:16Z"
+LABEL org.opencontainers.image.created="2025-11-20T15:16:24Z"
 LABEL org.opencontainers.image.source="https://github.com/viash-hub/craftbox"
-LABEL org.opencontainers.image.revision="a1801c5139bbcda244e06affa66d16f7abd5e124"
-LABEL org.opencontainers.image.version="v0.3.0"
+LABEL org.opencontainers.image.revision="4acf73e0255554766186f4016986782c0d25c309"
+LABEL org.opencontainers.image.version="v0.3.1"

 VIASHDOCKER
  fi
@@ -575,7 +575,7 @@ VIASH_DOCKER_RUN_ARGS=(-i --rm)

 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "sync_resources v0.3.0"
+  echo "sync_resources v0.3.1"
  echo ""
  echo "Sync a Viash package's test resources to the local filesystem based on the"
  echo "the \`.info.test_resources\` field in the \`_viash.yaml\` file. This is useful for"
@@ -654,7 +654,7 @@ while [[ $# -gt 0 ]]; do
            shift 1
            ;;
        --version)
-            echo "sync_resources v0.3.0"
+            echo "sync_resources v0.3.1"
            exit
            ;;
        --input)
@@ -801,7 +801,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then

  # determine docker image id
  if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then
-    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/craftbox/sync_resources:v0.3.0'
+    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/craftbox/sync_resources:v0.3.1'
  fi

  # print dockerfile
--- a/target/executable/untar/.config.vsh.yaml
+++ b/target/executable/untar/.config.vsh.yaml
@@ -1,5 +1,5 @@
 name: "untar"
-version: "v0.3.0"
+version: "v0.3.1"
 authors:
 - name: "Dries Schaumont"
  roles:
@@ -164,7 +164,7 @@ engines:
  id: "docker"
  image: "debian:stable-slim"
  target_registry: "images.viash-hub.com"
-  target_tag: "v0.3.0"
+  target_tag: "v0.3.1"
  namespace_separator: "/"
  setup:
  - type: "apt"
@@ -182,12 +182,11 @@ build_info:
  output: "target/executable/untar"
  executable: "target/executable/untar/untar"
  viash_version: "0.9.4"
-  git_commit: "a1801c5139bbcda244e06affa66d16f7abd5e124"
+  git_commit: "4acf73e0255554766186f4016986782c0d25c309"
  git_remote: "https://github.com/viash-hub/craftbox"
-  git_tag: "v0.1.0-11-ga1801c5"
 package_config:
  name: "craftbox"
-  version: "v0.3.0"
+  version: "v0.3.1"
  summary: "A collection of custom-tailored scripts and applied utilities built with\
    \ Viash.\n"
  description: "`craftbox` is a curated collection of custom scripts and utilities\
@@ -210,7 +209,7 @@ package_config:
  - ".requirements.commands := ['ps']\n"
  - ".engines += { type: \"native\" }"
  - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
-  - ".engines[.type == 'docker'].target_tag := 'v0.3.0'"
+  - ".engines[.type == 'docker'].target_tag := 'v0.3.1'"
  keywords:
  - "scripts"
  - "custom"
--- a/target/executable/untar/untar
+++ b/target/executable/untar/untar
@@ -1,6 +1,6 @@
 #!/usr/bin/env bash

-# untar v0.3.0
+# untar v0.3.1
 # 
 # This wrapper script is auto-generated by viash 0.9.4 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -455,10 +455,10 @@ RUN apt-get update && \

 LABEL org.opencontainers.image.authors="Dries Schaumont, Robrecht Cannoodt"
 LABEL org.opencontainers.image.description="Companion container for running component untar"
-LABEL org.opencontainers.image.created="2025-08-28T13:48:16Z"
+LABEL org.opencontainers.image.created="2025-11-20T15:16:24Z"
 LABEL org.opencontainers.image.source="https://github.com/viash-hub/craftbox"
-LABEL org.opencontainers.image.revision="a1801c5139bbcda244e06affa66d16f7abd5e124"
-LABEL org.opencontainers.image.version="v0.3.0"
+LABEL org.opencontainers.image.revision="4acf73e0255554766186f4016986782c0d25c309"
+LABEL org.opencontainers.image.version="v0.3.1"

 VIASHDOCKER
  fi
@@ -575,7 +575,7 @@ VIASH_DOCKER_RUN_ARGS=(-i --rm)

 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "untar v0.3.0"
+  echo "untar v0.3.1"
  echo ""
  echo "Unpack a .tar file. When the contents of the .tar file is just a single"
  echo "directory,"
@@ -646,7 +646,7 @@ while [[ $# -gt 0 ]]; do
            shift 1
            ;;
        --version)
-            echo "untar v0.3.0"
+            echo "untar v0.3.1"
            exit
            ;;
        --input)
@@ -776,7 +776,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then

  # determine docker image id
  if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then
-    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/craftbox/untar:v0.3.0'
+    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/craftbox/untar:v0.3.1'
  fi

  # print dockerfile