diff --git a/README.md b/README.md index 0cd93c0..d6187bf 100644 --- a/README.md +++ b/README.md @@ -43,7 +43,7 @@ Viash components in craftbox can be run in various ways: ``` mermaid lang="mermaid flowchart TD - A[craftbox v0.2.0] --> B(Viash Hub Launch) + A[craftbox v0.3.0] --> B(Viash Hub Launch) A --> C(Viash CLI) A --> D(Nextflow CLI) A --> E(Seqera Cloud) @@ -53,7 +53,7 @@ flowchart TD ### 1. Via the Viash Hub Launch interface You can run this component directly from the Viash Hub [Launch -interface](https://www.viash-hub.com/launch?package=craftbox&version=v0.2.0&component=concat_rtext&runner=Executable). +interface](https://www.viash-hub.com/launch?package=craftbox&version=v0.3.0&component=concat_rtext&runner=Executable). ![](docs/viash-hub.png) @@ -63,9 +63,9 @@ You can run this component directly from the command line using the Viash CLI. ``` bash -viash run vsh://craftbox@v0.2.0/concat_rtext -- --help +viash run vsh://craftbox@v0.3.0/concat_rtext -- --help -viash run vsh://craftbox@v0.2.0/concat_rtext -- \ +viash run vsh://craftbox@v0.3.0/concat_rtext -- \ --input path/to/input.txt \ --input path/to/compressed.txt.gz \ --output path/to/output.txt @@ -80,7 +80,7 @@ You can run this component as a Nextflow pipeline. ``` bash nextflow run https://packages.viash-hub.com/vsh/craftbox \ - -revision v0.2.0 \ + -revision v0.3.0 \ -main-script target/nextflow/concat_rtext/main.nf \ -latest -resume \ -profile docker \ @@ -109,7 +109,7 @@ component as a dependency: ``` yaml dependencies: - name: concat_rtext - repository: vsh://craftbox@v0.2.0 + repository: vsh://craftbox@v0.3.0 ``` **Tip:** See the [Viash diff --git a/README.qmd b/README.qmd index 58d1fa1..2660346 100644 --- a/README.qmd +++ b/README.qmd @@ -7,7 +7,7 @@ license <- paste0(package$links$repository, "/blob/main/LICENSE") contributing <- paste0(package$links$repository, "/blob/main/CONTRIBUTING.md") pkg <- package$name -ver <- if (!is.null(package$version)) package$version else "v0.2.0" +ver <- if (!is.null(package$version)) package$version else "v0.3.0" comp <- "concat_rtext" ``` # 🪡📦 `r pkg` diff --git a/target/executable/check_disk_space/.config.vsh.yaml b/target/executable/check_disk_space/.config.vsh.yaml index 773b12f..185a939 100644 --- a/target/executable/check_disk_space/.config.vsh.yaml +++ b/target/executable/check_disk_space/.config.vsh.yaml @@ -157,9 +157,9 @@ build_info: output: "target/executable/check_disk_space" executable: "target/executable/check_disk_space/check_disk_space" viash_version: "0.9.4" - git_commit: "952e20a6a88b08cfb46a57bfdb228d82c01e4748" + git_commit: "32cec141fe0eb61ce1b63f36a2e5c3ae2fbf9550" git_remote: "https://github.com/viash-hub/craftbox" - git_tag: "v0.1.0-8-g952e20a" + git_tag: "v0.1.0-9-g32cec14" package_config: name: "craftbox" version: "main" diff --git a/target/executable/check_disk_space/check_disk_space b/target/executable/check_disk_space/check_disk_space index 7636bc7..3b871ea 100755 --- a/target/executable/check_disk_space/check_disk_space +++ b/target/executable/check_disk_space/check_disk_space @@ -446,9 +446,9 @@ function ViashDockerfile { FROM bash:latest ENTRYPOINT [] LABEL org.opencontainers.image.description="Companion container for running component check_disk_space" -LABEL org.opencontainers.image.created="2025-06-26T14:28:25Z" +LABEL org.opencontainers.image.created="2025-08-28T13:47:24Z" LABEL org.opencontainers.image.source="https://github.com/viash-hub/craftbox" -LABEL org.opencontainers.image.revision="952e20a6a88b08cfb46a57bfdb228d82c01e4748" +LABEL org.opencontainers.image.revision="32cec141fe0eb61ce1b63f36a2e5c3ae2fbf9550" LABEL org.opencontainers.image.version="main" VIASHDOCKER diff --git a/target/executable/concat_text/.config.vsh.yaml b/target/executable/concat_text/.config.vsh.yaml index 47a8482..aa2420a 100644 --- a/target/executable/concat_text/.config.vsh.yaml +++ b/target/executable/concat_text/.config.vsh.yaml @@ -175,9 +175,9 @@ build_info: output: "target/executable/concat_text" executable: "target/executable/concat_text/concat_text" viash_version: "0.9.4" - git_commit: "952e20a6a88b08cfb46a57bfdb228d82c01e4748" + git_commit: "32cec141fe0eb61ce1b63f36a2e5c3ae2fbf9550" git_remote: "https://github.com/viash-hub/craftbox" - git_tag: "v0.1.0-8-g952e20a" + git_tag: "v0.1.0-9-g32cec14" package_config: name: "craftbox" version: "main" diff --git a/target/executable/concat_text/concat_text b/target/executable/concat_text/concat_text index d155407..7c605e4 100755 --- a/target/executable/concat_text/concat_text +++ b/target/executable/concat_text/concat_text @@ -453,9 +453,9 @@ RUN apk add --no-cache bash procps file LABEL org.opencontainers.image.authors="Toni Verbeiren, Dries Schaumont" LABEL org.opencontainers.image.description="Companion container for running component concat_text" -LABEL org.opencontainers.image.created="2025-06-26T14:28:24Z" +LABEL org.opencontainers.image.created="2025-08-28T13:47:24Z" LABEL org.opencontainers.image.source="https://github.com/viash-hub/craftbox" -LABEL org.opencontainers.image.revision="952e20a6a88b08cfb46a57bfdb228d82c01e4748" +LABEL org.opencontainers.image.revision="32cec141fe0eb61ce1b63f36a2e5c3ae2fbf9550" LABEL org.opencontainers.image.version="main" VIASHDOCKER diff --git a/target/executable/csv2fasta/.config.vsh.yaml b/target/executable/csv2fasta/.config.vsh.yaml index 8d5f784..e0c23ab 100644 --- a/target/executable/csv2fasta/.config.vsh.yaml +++ b/target/executable/csv2fasta/.config.vsh.yaml @@ -257,9 +257,9 @@ build_info: output: "target/executable/csv2fasta" executable: "target/executable/csv2fasta/csv2fasta" viash_version: "0.9.4" - git_commit: "952e20a6a88b08cfb46a57bfdb228d82c01e4748" + git_commit: "32cec141fe0eb61ce1b63f36a2e5c3ae2fbf9550" git_remote: "https://github.com/viash-hub/craftbox" - git_tag: "v0.1.0-8-g952e20a" + git_tag: "v0.1.0-9-g32cec14" package_config: name: "craftbox" version: "main" diff --git a/target/executable/csv2fasta/csv2fasta b/target/executable/csv2fasta/csv2fasta index 85abe3a..560ed15 100755 --- a/target/executable/csv2fasta/csv2fasta +++ b/target/executable/csv2fasta/csv2fasta @@ -458,9 +458,9 @@ RUN pip install --upgrade pip && \ LABEL org.opencontainers.image.authors="Dries Schaumont, Robrecht Cannoodt" LABEL org.opencontainers.image.description="Companion container for running component csv2fasta" -LABEL org.opencontainers.image.created="2025-06-26T14:28:24Z" +LABEL org.opencontainers.image.created="2025-08-28T13:47:24Z" LABEL org.opencontainers.image.source="https://github.com/viash-hub/craftbox" -LABEL org.opencontainers.image.revision="952e20a6a88b08cfb46a57bfdb228d82c01e4748" +LABEL org.opencontainers.image.revision="32cec141fe0eb61ce1b63f36a2e5c3ae2fbf9550" LABEL org.opencontainers.image.version="main" VIASHDOCKER diff --git a/target/executable/move_files_to_directory/.config.vsh.yaml b/target/executable/move_files_to_directory/.config.vsh.yaml index 2bb380c..cb62b7c 100644 --- a/target/executable/move_files_to_directory/.config.vsh.yaml +++ b/target/executable/move_files_to_directory/.config.vsh.yaml @@ -153,9 +153,9 @@ build_info: output: "target/executable/move_files_to_directory" executable: "target/executable/move_files_to_directory/move_files_to_directory" viash_version: "0.9.4" - git_commit: "952e20a6a88b08cfb46a57bfdb228d82c01e4748" + git_commit: "32cec141fe0eb61ce1b63f36a2e5c3ae2fbf9550" git_remote: "https://github.com/viash-hub/craftbox" - git_tag: "v0.1.0-8-g952e20a" + git_tag: "v0.1.0-9-g32cec14" package_config: name: "craftbox" version: "main" diff --git a/target/executable/move_files_to_directory/move_files_to_directory b/target/executable/move_files_to_directory/move_files_to_directory index a846736..eefc968 100755 --- a/target/executable/move_files_to_directory/move_files_to_directory +++ b/target/executable/move_files_to_directory/move_files_to_directory @@ -454,9 +454,9 @@ RUN apt-get update && \ LABEL org.opencontainers.image.authors="Dorien Roosen" LABEL org.opencontainers.image.description="Companion container for running component move_files_to_directory" -LABEL org.opencontainers.image.created="2025-06-26T14:28:25Z" +LABEL org.opencontainers.image.created="2025-08-28T13:47:24Z" LABEL org.opencontainers.image.source="https://github.com/viash-hub/craftbox" -LABEL org.opencontainers.image.revision="952e20a6a88b08cfb46a57bfdb228d82c01e4748" +LABEL org.opencontainers.image.revision="32cec141fe0eb61ce1b63f36a2e5c3ae2fbf9550" LABEL org.opencontainers.image.version="main" VIASHDOCKER diff --git a/target/executable/sync_resources/.config.vsh.yaml b/target/executable/sync_resources/.config.vsh.yaml index b99adda..f9f6fe7 100644 --- a/target/executable/sync_resources/.config.vsh.yaml +++ b/target/executable/sync_resources/.config.vsh.yaml @@ -197,9 +197,9 @@ build_info: output: "target/executable/sync_resources" executable: "target/executable/sync_resources/sync_resources" viash_version: "0.9.4" - git_commit: "952e20a6a88b08cfb46a57bfdb228d82c01e4748" + git_commit: "32cec141fe0eb61ce1b63f36a2e5c3ae2fbf9550" git_remote: "https://github.com/viash-hub/craftbox" - git_tag: "v0.1.0-8-g952e20a" + git_tag: "v0.1.0-9-g32cec14" package_config: name: "craftbox" version: "main" diff --git a/target/executable/sync_resources/sync_resources b/target/executable/sync_resources/sync_resources index cdf5604..8636cfc 100755 --- a/target/executable/sync_resources/sync_resources +++ b/target/executable/sync_resources/sync_resources @@ -455,9 +455,9 @@ RUN rclone config create s3 s3 anonymous=true RUN rclone config create gs gcs anonymous=true LABEL org.opencontainers.image.authors="Robrecht Cannoodt, Dries Schaumont" LABEL org.opencontainers.image.description="Companion container for running component sync_resources" -LABEL org.opencontainers.image.created="2025-06-26T14:28:25Z" +LABEL org.opencontainers.image.created="2025-08-28T13:47:24Z" LABEL org.opencontainers.image.source="https://github.com/viash-hub/craftbox" -LABEL org.opencontainers.image.revision="952e20a6a88b08cfb46a57bfdb228d82c01e4748" +LABEL org.opencontainers.image.revision="32cec141fe0eb61ce1b63f36a2e5c3ae2fbf9550" LABEL org.opencontainers.image.version="main" VIASHDOCKER diff --git a/target/executable/untar/.config.vsh.yaml b/target/executable/untar/.config.vsh.yaml index c22a6d2..5e3a3e7 100644 --- a/target/executable/untar/.config.vsh.yaml +++ b/target/executable/untar/.config.vsh.yaml @@ -182,9 +182,9 @@ build_info: output: "target/executable/untar" executable: "target/executable/untar/untar" viash_version: "0.9.4" - git_commit: "952e20a6a88b08cfb46a57bfdb228d82c01e4748" + git_commit: "32cec141fe0eb61ce1b63f36a2e5c3ae2fbf9550" git_remote: "https://github.com/viash-hub/craftbox" - git_tag: "v0.1.0-8-g952e20a" + git_tag: "v0.1.0-9-g32cec14" package_config: name: "craftbox" version: "main" diff --git a/target/executable/untar/untar b/target/executable/untar/untar index 8ece2d1..d977126 100755 --- a/target/executable/untar/untar +++ b/target/executable/untar/untar @@ -455,9 +455,9 @@ RUN apt-get update && \ LABEL org.opencontainers.image.authors="Dries Schaumont, Robrecht Cannoodt" LABEL org.opencontainers.image.description="Companion container for running component untar" -LABEL org.opencontainers.image.created="2025-06-26T14:28:25Z" +LABEL org.opencontainers.image.created="2025-08-28T13:47:24Z" LABEL org.opencontainers.image.source="https://github.com/viash-hub/craftbox" -LABEL org.opencontainers.image.revision="952e20a6a88b08cfb46a57bfdb228d82c01e4748" +LABEL org.opencontainers.image.revision="32cec141fe0eb61ce1b63f36a2e5c3ae2fbf9550" LABEL org.opencontainers.image.version="main" VIASHDOCKER diff --git a/target/nextflow/check_disk_space/.config.vsh.yaml b/target/nextflow/check_disk_space/.config.vsh.yaml index a8cc880..010e6b6 100644 --- a/target/nextflow/check_disk_space/.config.vsh.yaml +++ b/target/nextflow/check_disk_space/.config.vsh.yaml @@ -157,9 +157,9 @@ build_info: output: "target/nextflow/check_disk_space" executable: "target/nextflow/check_disk_space/main.nf" viash_version: "0.9.4" - git_commit: "952e20a6a88b08cfb46a57bfdb228d82c01e4748" + git_commit: "32cec141fe0eb61ce1b63f36a2e5c3ae2fbf9550" git_remote: "https://github.com/viash-hub/craftbox" - git_tag: "v0.1.0-8-g952e20a" + git_tag: "v0.1.0-9-g32cec14" package_config: name: "craftbox" version: "main" diff --git a/target/nextflow/check_disk_space/main.nf b/target/nextflow/check_disk_space/main.nf index 333728e..7230d03 100644 --- a/target/nextflow/check_disk_space/main.nf +++ b/target/nextflow/check_disk_space/main.nf @@ -3216,9 +3216,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/check_disk_space", "viash_version" : "0.9.4", - "git_commit" : "952e20a6a88b08cfb46a57bfdb228d82c01e4748", + "git_commit" : "32cec141fe0eb61ce1b63f36a2e5c3ae2fbf9550", "git_remote" : "https://github.com/viash-hub/craftbox", - "git_tag" : "v0.1.0-8-g952e20a" + "git_tag" : "v0.1.0-9-g32cec14" }, "package_config" : { "name" : "craftbox", diff --git a/target/nextflow/concat_text/.config.vsh.yaml b/target/nextflow/concat_text/.config.vsh.yaml index a961845..d78d0d8 100644 --- a/target/nextflow/concat_text/.config.vsh.yaml +++ b/target/nextflow/concat_text/.config.vsh.yaml @@ -175,9 +175,9 @@ build_info: output: "target/nextflow/concat_text" executable: "target/nextflow/concat_text/main.nf" viash_version: "0.9.4" - git_commit: "952e20a6a88b08cfb46a57bfdb228d82c01e4748" + git_commit: "32cec141fe0eb61ce1b63f36a2e5c3ae2fbf9550" git_remote: "https://github.com/viash-hub/craftbox" - git_tag: "v0.1.0-8-g952e20a" + git_tag: "v0.1.0-9-g32cec14" package_config: name: "craftbox" version: "main" diff --git a/target/nextflow/concat_text/main.nf b/target/nextflow/concat_text/main.nf index e52c93b..0588d22 100644 --- a/target/nextflow/concat_text/main.nf +++ b/target/nextflow/concat_text/main.nf @@ -3262,9 +3262,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/concat_text", "viash_version" : "0.9.4", - "git_commit" : "952e20a6a88b08cfb46a57bfdb228d82c01e4748", + "git_commit" : "32cec141fe0eb61ce1b63f36a2e5c3ae2fbf9550", "git_remote" : "https://github.com/viash-hub/craftbox", - "git_tag" : "v0.1.0-8-g952e20a" + "git_tag" : "v0.1.0-9-g32cec14" }, "package_config" : { "name" : "craftbox", diff --git a/target/nextflow/csv2fasta/.config.vsh.yaml b/target/nextflow/csv2fasta/.config.vsh.yaml index 1b17ba4..900c271 100644 --- a/target/nextflow/csv2fasta/.config.vsh.yaml +++ b/target/nextflow/csv2fasta/.config.vsh.yaml @@ -257,9 +257,9 @@ build_info: output: "target/nextflow/csv2fasta" executable: "target/nextflow/csv2fasta/main.nf" viash_version: "0.9.4" - git_commit: "952e20a6a88b08cfb46a57bfdb228d82c01e4748" + git_commit: "32cec141fe0eb61ce1b63f36a2e5c3ae2fbf9550" git_remote: "https://github.com/viash-hub/craftbox" - git_tag: "v0.1.0-8-g952e20a" + git_tag: "v0.1.0-9-g32cec14" package_config: name: "craftbox" version: "main" diff --git a/target/nextflow/csv2fasta/main.nf b/target/nextflow/csv2fasta/main.nf index f252019..c685624 100644 --- a/target/nextflow/csv2fasta/main.nf +++ b/target/nextflow/csv2fasta/main.nf @@ -3352,9 +3352,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/csv2fasta", "viash_version" : "0.9.4", - "git_commit" : "952e20a6a88b08cfb46a57bfdb228d82c01e4748", + "git_commit" : "32cec141fe0eb61ce1b63f36a2e5c3ae2fbf9550", "git_remote" : "https://github.com/viash-hub/craftbox", - "git_tag" : "v0.1.0-8-g952e20a" + "git_tag" : "v0.1.0-9-g32cec14" }, "package_config" : { "name" : "craftbox", diff --git a/target/nextflow/move_files_to_directory/.config.vsh.yaml b/target/nextflow/move_files_to_directory/.config.vsh.yaml index db4315d..ffa9378 100644 --- a/target/nextflow/move_files_to_directory/.config.vsh.yaml +++ b/target/nextflow/move_files_to_directory/.config.vsh.yaml @@ -153,9 +153,9 @@ build_info: output: "target/nextflow/move_files_to_directory" executable: "target/nextflow/move_files_to_directory/main.nf" viash_version: "0.9.4" - git_commit: "952e20a6a88b08cfb46a57bfdb228d82c01e4748" + git_commit: "32cec141fe0eb61ce1b63f36a2e5c3ae2fbf9550" git_remote: "https://github.com/viash-hub/craftbox" - git_tag: "v0.1.0-8-g952e20a" + git_tag: "v0.1.0-9-g32cec14" package_config: name: "craftbox" version: "main" diff --git a/target/nextflow/move_files_to_directory/main.nf b/target/nextflow/move_files_to_directory/main.nf index 0aef2d7..12a08af 100644 --- a/target/nextflow/move_files_to_directory/main.nf +++ b/target/nextflow/move_files_to_directory/main.nf @@ -3228,9 +3228,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/move_files_to_directory", "viash_version" : "0.9.4", - "git_commit" : "952e20a6a88b08cfb46a57bfdb228d82c01e4748", + "git_commit" : "32cec141fe0eb61ce1b63f36a2e5c3ae2fbf9550", "git_remote" : "https://github.com/viash-hub/craftbox", - "git_tag" : "v0.1.0-8-g952e20a" + "git_tag" : "v0.1.0-9-g32cec14" }, "package_config" : { "name" : "craftbox", diff --git a/target/nextflow/sync_resources/.config.vsh.yaml b/target/nextflow/sync_resources/.config.vsh.yaml index cabe08f..977534d 100644 --- a/target/nextflow/sync_resources/.config.vsh.yaml +++ b/target/nextflow/sync_resources/.config.vsh.yaml @@ -197,9 +197,9 @@ build_info: output: "target/nextflow/sync_resources" executable: "target/nextflow/sync_resources/main.nf" viash_version: "0.9.4" - git_commit: "952e20a6a88b08cfb46a57bfdb228d82c01e4748" + git_commit: "32cec141fe0eb61ce1b63f36a2e5c3ae2fbf9550" git_remote: "https://github.com/viash-hub/craftbox" - git_tag: "v0.1.0-8-g952e20a" + git_tag: "v0.1.0-9-g32cec14" package_config: name: "craftbox" version: "main" diff --git a/target/nextflow/sync_resources/main.nf b/target/nextflow/sync_resources/main.nf index 3ad404e..80c0a72 100644 --- a/target/nextflow/sync_resources/main.nf +++ b/target/nextflow/sync_resources/main.nf @@ -3294,9 +3294,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/sync_resources", "viash_version" : "0.9.4", - "git_commit" : "952e20a6a88b08cfb46a57bfdb228d82c01e4748", + "git_commit" : "32cec141fe0eb61ce1b63f36a2e5c3ae2fbf9550", "git_remote" : "https://github.com/viash-hub/craftbox", - "git_tag" : "v0.1.0-8-g952e20a" + "git_tag" : "v0.1.0-9-g32cec14" }, "package_config" : { "name" : "craftbox", diff --git a/target/nextflow/untar/.config.vsh.yaml b/target/nextflow/untar/.config.vsh.yaml index 46ebe7c..1728fcd 100644 --- a/target/nextflow/untar/.config.vsh.yaml +++ b/target/nextflow/untar/.config.vsh.yaml @@ -182,9 +182,9 @@ build_info: output: "target/nextflow/untar" executable: "target/nextflow/untar/main.nf" viash_version: "0.9.4" - git_commit: "952e20a6a88b08cfb46a57bfdb228d82c01e4748" + git_commit: "32cec141fe0eb61ce1b63f36a2e5c3ae2fbf9550" git_remote: "https://github.com/viash-hub/craftbox" - git_tag: "v0.1.0-8-g952e20a" + git_tag: "v0.1.0-9-g32cec14" package_config: name: "craftbox" version: "main" diff --git a/target/nextflow/untar/main.nf b/target/nextflow/untar/main.nf index b373852..2db3ba9 100644 --- a/target/nextflow/untar/main.nf +++ b/target/nextflow/untar/main.nf @@ -3273,9 +3273,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/untar", "viash_version" : "0.9.4", - "git_commit" : "952e20a6a88b08cfb46a57bfdb228d82c01e4748", + "git_commit" : "32cec141fe0eb61ce1b63f36a2e5c3ae2fbf9550", "git_remote" : "https://github.com/viash-hub/craftbox", - "git_tag" : "v0.1.0-8-g952e20a" + "git_tag" : "v0.1.0-9-g32cec14" }, "package_config" : { "name" : "craftbox",