From f014f08cece1c9412d367c148c967dc189e7fb96 Mon Sep 17 00:00:00 2001 From: CI Date: Tue, 23 Jul 2024 12:05:23 +0000 Subject: [PATCH] Build branch concat_text with version concat_text (5b88b9d) Build pipeline: viash-hub.craftbox.concat-text-w7mdh Source commit: https://github.com/viash-hub/craftbox/commit/5b88b9d8e604ea154a1e952c48a93a203547c18c Source message: Update src/concat_text/config.vsh.yaml Co-authored-by: Dries Schaumont <5946712+DriesSchaumont@users.noreply.github.com> --- src/concat_text/config.vsh.yaml | 2 +- target/executable/concat_text/.config.vsh.yaml | 4 ++-- target/executable/concat_text/concat_text | 6 +++--- target/executable/csv2fasta/.config.vsh.yaml | 2 +- target/executable/csv2fasta/csv2fasta | 4 ++-- target/executable/untar/.config.vsh.yaml | 2 +- target/executable/untar/untar | 4 ++-- target/nextflow/concat_text/.config.vsh.yaml | 4 ++-- target/nextflow/concat_text/main.nf | 4 ++-- target/nextflow/concat_text/nextflow.config | 2 +- target/nextflow/concat_text/nextflow_schema.json | 2 +- target/nextflow/csv2fasta/.config.vsh.yaml | 2 +- target/nextflow/csv2fasta/main.nf | 2 +- target/nextflow/untar/.config.vsh.yaml | 2 +- target/nextflow/untar/main.nf | 2 +- 15 files changed, 22 insertions(+), 22 deletions(-) diff --git a/src/concat_text/config.vsh.yaml b/src/concat_text/config.vsh.yaml index a015db9..30bd3e4 100644 --- a/src/concat_text/config.vsh.yaml +++ b/src/concat_text/config.vsh.yaml @@ -1,6 +1,6 @@ name: concat_text description: | - concatenate a number of text files, handle gzipped text files gracefully and + Concatenate a number of text files, handle gzipped text files gracefully and optionally gzip the output text file. This component is useful for concatening fastq files from different lanes, for instance. diff --git a/target/executable/concat_text/.config.vsh.yaml b/target/executable/concat_text/.config.vsh.yaml index 789777a..591c1de 100644 --- a/target/executable/concat_text/.config.vsh.yaml +++ b/target/executable/concat_text/.config.vsh.yaml @@ -38,7 +38,7 @@ resources: - type: "bash_script" path: "script.sh" is_executable: true -description: "concatenate a number of text files, handle gzipped text files gracefully\ +description: "Concatenate a number of text files, handle gzipped text files gracefully\ \ and\noptionally gzip the output text file.\n\nThis component is useful for concatening\ \ fastq files from different lanes, for instance.\n" test_resources: @@ -142,7 +142,7 @@ build_info: output: "target/executable/concat_text" executable: "target/executable/concat_text/concat_text" viash_version: "0.9.0-RC6" - git_commit: "b4f8c24010979890209908968ff870c97d98bfa2" + git_commit: "5b88b9d8e604ea154a1e952c48a93a203547c18c" git_remote: "https://github.com/viash-hub/craftbox" package_config: name: "craftbox" diff --git a/target/executable/concat_text/concat_text b/target/executable/concat_text/concat_text index e00dbaa..dc94a99 100755 --- a/target/executable/concat_text/concat_text +++ b/target/executable/concat_text/concat_text @@ -173,7 +173,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP" function ViashHelp { echo "concat_text concat_text" echo "" - echo "concatenate a number of text files, handle gzipped text files gracefully and" + echo "Concatenate a number of text files, handle gzipped text files gracefully and" echo "optionally gzip the output text file." echo "" echo "This component is useful for concatening fastq files from different lanes, for" @@ -473,9 +473,9 @@ ENTRYPOINT [] RUN apk add --no-cache bash procps file LABEL org.opencontainers.image.description="Companion container for running component concat_text" -LABEL org.opencontainers.image.created="2024-07-23T10:22:01Z" +LABEL org.opencontainers.image.created="2024-07-23T11:57:34Z" LABEL org.opencontainers.image.source="https://github.com/viash-hub/craftbox" -LABEL org.opencontainers.image.revision="b4f8c24010979890209908968ff870c97d98bfa2" +LABEL org.opencontainers.image.revision="5b88b9d8e604ea154a1e952c48a93a203547c18c" LABEL org.opencontainers.image.version="concat_text" VIASHDOCKER diff --git a/target/executable/csv2fasta/.config.vsh.yaml b/target/executable/csv2fasta/.config.vsh.yaml index f31bdfd..ee95479 100644 --- a/target/executable/csv2fasta/.config.vsh.yaml +++ b/target/executable/csv2fasta/.config.vsh.yaml @@ -222,7 +222,7 @@ build_info: output: "target/executable/csv2fasta" executable: "target/executable/csv2fasta/csv2fasta" viash_version: "0.9.0-RC6" - git_commit: "b4f8c24010979890209908968ff870c97d98bfa2" + git_commit: "5b88b9d8e604ea154a1e952c48a93a203547c18c" git_remote: "https://github.com/viash-hub/craftbox" package_config: name: "craftbox" diff --git a/target/executable/csv2fasta/csv2fasta b/target/executable/csv2fasta/csv2fasta index 70a7048..841a2d1 100755 --- a/target/executable/csv2fasta/csv2fasta +++ b/target/executable/csv2fasta/csv2fasta @@ -524,9 +524,9 @@ RUN pip install --upgrade pip && \ pip install --upgrade --no-cache-dir "dnaio" LABEL org.opencontainers.image.description="Companion container for running component csv2fasta" -LABEL org.opencontainers.image.created="2024-07-23T10:22:00Z" +LABEL org.opencontainers.image.created="2024-07-23T11:57:33Z" LABEL org.opencontainers.image.source="https://github.com/viash-hub/craftbox" -LABEL org.opencontainers.image.revision="b4f8c24010979890209908968ff870c97d98bfa2" +LABEL org.opencontainers.image.revision="5b88b9d8e604ea154a1e952c48a93a203547c18c" LABEL org.opencontainers.image.version="concat_text" VIASHDOCKER diff --git a/target/executable/untar/.config.vsh.yaml b/target/executable/untar/.config.vsh.yaml index a946f85..8f03e81 100644 --- a/target/executable/untar/.config.vsh.yaml +++ b/target/executable/untar/.config.vsh.yaml @@ -147,7 +147,7 @@ build_info: output: "target/executable/untar" executable: "target/executable/untar/untar" viash_version: "0.9.0-RC6" - git_commit: "b4f8c24010979890209908968ff870c97d98bfa2" + git_commit: "5b88b9d8e604ea154a1e952c48a93a203547c18c" git_remote: "https://github.com/viash-hub/craftbox" package_config: name: "craftbox" diff --git a/target/executable/untar/untar b/target/executable/untar/untar index 43612e0..cf43dcb 100755 --- a/target/executable/untar/untar +++ b/target/executable/untar/untar @@ -475,9 +475,9 @@ RUN apt-get update && \ rm -rf /var/lib/apt/lists/* LABEL org.opencontainers.image.description="Companion container for running component untar" -LABEL org.opencontainers.image.created="2024-07-23T10:22:01Z" +LABEL org.opencontainers.image.created="2024-07-23T11:57:34Z" LABEL org.opencontainers.image.source="https://github.com/viash-hub/craftbox" -LABEL org.opencontainers.image.revision="b4f8c24010979890209908968ff870c97d98bfa2" +LABEL org.opencontainers.image.revision="5b88b9d8e604ea154a1e952c48a93a203547c18c" LABEL org.opencontainers.image.version="concat_text" VIASHDOCKER diff --git a/target/nextflow/concat_text/.config.vsh.yaml b/target/nextflow/concat_text/.config.vsh.yaml index 1b0e6a7..d8c84a3 100644 --- a/target/nextflow/concat_text/.config.vsh.yaml +++ b/target/nextflow/concat_text/.config.vsh.yaml @@ -38,7 +38,7 @@ resources: - type: "bash_script" path: "script.sh" is_executable: true -description: "concatenate a number of text files, handle gzipped text files gracefully\ +description: "Concatenate a number of text files, handle gzipped text files gracefully\ \ and\noptionally gzip the output text file.\n\nThis component is useful for concatening\ \ fastq files from different lanes, for instance.\n" test_resources: @@ -142,7 +142,7 @@ build_info: output: "target/nextflow/concat_text" executable: "target/nextflow/concat_text/main.nf" viash_version: "0.9.0-RC6" - git_commit: "b4f8c24010979890209908968ff870c97d98bfa2" + git_commit: "5b88b9d8e604ea154a1e952c48a93a203547c18c" git_remote: "https://github.com/viash-hub/craftbox" package_config: name: "craftbox" diff --git a/target/nextflow/concat_text/main.nf b/target/nextflow/concat_text/main.nf index 549f9ae..df56e39 100644 --- a/target/nextflow/concat_text/main.nf +++ b/target/nextflow/concat_text/main.nf @@ -2833,7 +2833,7 @@ meta = [ "is_executable" : true } ], - "description" : "concatenate a number of text files, handle gzipped text files gracefully and\noptionally gzip the output text file.\n\nThis component is useful for concatening fastq files from different lanes, for instance.\n", + "description" : "Concatenate a number of text files, handle gzipped text files gracefully and\noptionally gzip the output text file.\n\nThis component is useful for concatening fastq files from different lanes, for instance.\n", "test_resources" : [ { "type" : "bash_script", @@ -2955,7 +2955,7 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/concat_text", "viash_version" : "0.9.0-RC6", - "git_commit" : "b4f8c24010979890209908968ff870c97d98bfa2", + "git_commit" : "5b88b9d8e604ea154a1e952c48a93a203547c18c", "git_remote" : "https://github.com/viash-hub/craftbox" }, "package_config" : { diff --git a/target/nextflow/concat_text/nextflow.config b/target/nextflow/concat_text/nextflow.config index abea649..d9194e2 100644 --- a/target/nextflow/concat_text/nextflow.config +++ b/target/nextflow/concat_text/nextflow.config @@ -3,7 +3,7 @@ manifest { mainScript = 'main.nf' nextflowVersion = '!>=20.12.1-edge' version = 'concat_text' - description = 'concatenate a number of text files, handle gzipped text files gracefully and\noptionally gzip the output text file.\n\nThis component is useful for concatening fastq files from different lanes, for instance.\n' + description = 'Concatenate a number of text files, handle gzipped text files gracefully and\noptionally gzip the output text file.\n\nThis component is useful for concatening fastq files from different lanes, for instance.\n' } process.container = 'nextflow/bash:latest' diff --git a/target/nextflow/concat_text/nextflow_schema.json b/target/nextflow/concat_text/nextflow_schema.json index 0d839c1..067df29 100644 --- a/target/nextflow/concat_text/nextflow_schema.json +++ b/target/nextflow/concat_text/nextflow_schema.json @@ -1,7 +1,7 @@ { "$schema": "http://json-schema.org/draft-07/schema", "title": "concat_text", -"description": "concatenate a number of text files, handle gzipped text files gracefully and\noptionally gzip the output text file.\n\nThis component is useful for concatening fastq files from different lanes, for instance.\n", +"description": "Concatenate a number of text files, handle gzipped text files gracefully and\noptionally gzip the output text file.\n\nThis component is useful for concatening fastq files from different lanes, for instance.\n", "type": "object", "definitions": { diff --git a/target/nextflow/csv2fasta/.config.vsh.yaml b/target/nextflow/csv2fasta/.config.vsh.yaml index 3c0d210..089aa41 100644 --- a/target/nextflow/csv2fasta/.config.vsh.yaml +++ b/target/nextflow/csv2fasta/.config.vsh.yaml @@ -222,7 +222,7 @@ build_info: output: "target/nextflow/csv2fasta" executable: "target/nextflow/csv2fasta/main.nf" viash_version: "0.9.0-RC6" - git_commit: "b4f8c24010979890209908968ff870c97d98bfa2" + git_commit: "5b88b9d8e604ea154a1e952c48a93a203547c18c" git_remote: "https://github.com/viash-hub/craftbox" package_config: name: "craftbox" diff --git a/target/nextflow/csv2fasta/main.nf b/target/nextflow/csv2fasta/main.nf index 2d58045..423ec9d 100644 --- a/target/nextflow/csv2fasta/main.nf +++ b/target/nextflow/csv2fasta/main.nf @@ -3041,7 +3041,7 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/csv2fasta", "viash_version" : "0.9.0-RC6", - "git_commit" : "b4f8c24010979890209908968ff870c97d98bfa2", + "git_commit" : "5b88b9d8e604ea154a1e952c48a93a203547c18c", "git_remote" : "https://github.com/viash-hub/craftbox" }, "package_config" : { diff --git a/target/nextflow/untar/.config.vsh.yaml b/target/nextflow/untar/.config.vsh.yaml index 924b575..ed7e023 100644 --- a/target/nextflow/untar/.config.vsh.yaml +++ b/target/nextflow/untar/.config.vsh.yaml @@ -147,7 +147,7 @@ build_info: output: "target/nextflow/untar" executable: "target/nextflow/untar/main.nf" viash_version: "0.9.0-RC6" - git_commit: "b4f8c24010979890209908968ff870c97d98bfa2" + git_commit: "5b88b9d8e604ea154a1e952c48a93a203547c18c" git_remote: "https://github.com/viash-hub/craftbox" package_config: name: "craftbox" diff --git a/target/nextflow/untar/main.nf b/target/nextflow/untar/main.nf index 0471013..3639c36 100644 --- a/target/nextflow/untar/main.nf +++ b/target/nextflow/untar/main.nf @@ -2962,7 +2962,7 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/untar", "viash_version" : "0.9.0-RC6", - "git_commit" : "b4f8c24010979890209908968ff870c97d98bfa2", + "git_commit" : "5b88b9d8e604ea154a1e952c48a93a203547c18c", "git_remote" : "https://github.com/viash-hub/craftbox" }, "package_config" : {