{ "$schema": "https://json-schema.org/draft/2020-12/schema", "title": "concat_text", "description": "Concatenate a number of text files, handle gzipped text files gracefully and\noptionally gzip the output text file.\n\nThis component is useful for concatening fastq files from different lanes, for instance.\n", "type": "object", "$defs": { "input arguments": { "title": "Input arguments", "type": "object", "description": "No description", "properties": { "input": { "type": "array", "items": { "type": "string" }, "format": "path", "exists": true, "description": "A list of (gzipped) text files.", "help_text": "Type: `file`, multiple: `True`, required, direction: `input`, example: `[\"input?.txt.gz\"]`. " } } }, "output arguments": { "title": "Output arguments", "type": "object", "description": "No description", "properties": { "gzip_output": { "type": "boolean", "description": "Should the output be zipped?", "help_text": "Type: `boolean_true`, multiple: `False`, default: `false`. ", "default": false }, "output": { "type": "string", "format": "path", "description": "File to write the output to, optionally gzipped.", "help_text": "Type: `file`, multiple: `False`, default: `\"$id.$key.output.txt\"`, direction: `output`, example: `\"output.txt\"`. ", "default": "$id.$key.output.txt" } } }, "nextflow input-output arguments": { "title": "Nextflow input-output arguments", "type": "object", "description": "Input/output parameters for Nextflow itself. Please note that both publishDir and publish_dir are supported but at least one has to be configured.", "properties": { "publish_dir": { "type": "string", "description": "Path to an output directory.", "help_text": "Type: `string`, multiple: `False`, required, example: `\"output/\"`. " } } } }, "allOf": [ { "$ref": "#/$defs/input arguments" }, { "$ref": "#/$defs/output arguments" }, { "$ref": "#/$defs/nextflow input-output arguments" } ] }